Citrus Sinensis ID: 004737

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730--
Protein Sequence
MQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccEEEEccccccccccEEccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccEEEccccccEEEcccccccEEEccccccccccccccEEEEEccccccccccccccccccccccccccEEEcccccccEEEEEEccccEEEEEcccccEEccccccccEEccEEEEEEEcccccccccccEEEEEcccccccccEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEcccccccccEEEEEEcccccEEEEEcccccEEEccccccccEEcccccccccEEEEEEcccccEEEEEccccccEEEEEcccccEEEEEEEcccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHHHcccccHHHHHHHHccccccccEEEcccccHHHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHEccccccccccccccccccEcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEccccccEEEEcccccccEEEcccEEEEcccccEEEEEEcccccEccccccEcccccccEEEEEEcccccEEEEcccccccccEEEEEEcccccccEEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
MQVQQLLLQRHAQQQQQQQRRDSTqhlndtgddlrpgfAKAFTTKMYEDRlkklpfqrdslddatikprlsdnmtqlldpNHATLLKAaaigsqpsgqtlhgthgvsqqvqsrsqqpplstqevktemnptmnpraagsegsligvhgsnqgagnvtlkgwpltgldqfRSGLLQQQKSLTQPYNQLQLQQLMLQAQQnlaspsandlesRKLRMLHnsrnmglardgssnsvgDLVSTVGSAmqiispglprgdndLLIKIQQQQQQLqhyshhplssqqsqnsnpllQQQDkilaggsmtmdgsmsntfqgndqasknqigrkrkqavsssgpanssgtantpgptpsspsspsthtpgdvisrptlqhngassksllmfgsdgmgsltsapnqltdmdrfvddgslddnvesflspddadprdrvgrsaevgkgftftefqlipastskveschfspdgkllatgghdkkAVLWCTESFTVKSTLEEHTQWitdvrfspslsrlatssadrtvrvwdtenpdyslrtftghsttvmsldfhpskedllcscdnnseirywsinngscagvfkcqsgatqmrfqPRLGRILAAAIENYISILDVETQVCRLKLqghknqvhsvcwntsgeYLASVSDELVRVWsigsgskgecihelsctgnkfhscvfhptfpsllVIGCYETLELWnmtenktltLSAHDKLVSSLAASTVNGMVAsashdkcvkiwk
Flexible Loop (DISEMBL)
MQVQQLLLQRHAQQQQQQQRRDSTqhlndtgddlrpGFAKAFTTKMYedrlkklpfqrdslddatikPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQqvqsrsqqpplstQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRnmglardgssnsVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQavsssgpanssgtantpgptpsspsspSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVEsflspddadprdrVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTqwitdvrfspslsrlatssadrtvrvwdtenpdyslrtftGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNgmvasashdkcvkiwk
Low Complexity Region (SEG)
MqvqqlllqrhaqqqqqqqrrDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGvsqqvqsrsqqPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYnqlqlqqlmlqaqqnlaSPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIqqqqqqlqhyshhplssqqsqnsnpllqqqDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANssgtantpgptpsspsspsthtpgDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered region (IsUnstruct)
********************************************************************************************************************************************************AGNVTLKGWPLTGLDQFRSGLL************************************************************************************LI******************************************************************************************************************************************************************************GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA*****KCVK***
Disordered Region (DISOPRED)
***************************************KAFTTKMYE*****************************LDPNHAT**********************************************************************NVTLKGWPLTGLDQ*********************************************RMLHN***************GDLV****************************************************************TMDGSMSNTFQGNDQASKNQIGRK*****SSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQ*NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered Region (DISEMBL)
**************************LNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPS*******************************MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKI*************************LLQQQDKILAGGSMTMDGSMSNTFQG***********************************************GDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered Region (DISPRO)
MQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF*TKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQ*****HGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLA**SANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQL**************************LAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	732	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	yes	no	0.965	0.759	0.583	0.0
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.383	0.184	0.340	1e-32
Q00808	1356	Vegetative incompatibilit	yes	no	0.418	0.225	0.303	3e-30
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.366	0.213	0.302	5e-25
P0CS42	433	Nuclear distribution prot	yes	no	0.368	0.623	0.269	1e-23
P0CS43	433	Nuclear distribution prot	N/A	no	0.368	0.623	0.269	1e-23
C4Q0P6	417	Lissencephaly-1 homolog O	N/A	no	0.366	0.642	0.281	7e-23
P49695	742	Probable serine/threonine	no	no	0.370	0.365	0.303	6e-22
O22212	554	U4/U6 small nuclear ribon	no	no	0.368	0.487	0.284	3e-21
C3XVT5	406	Lissencephaly-1 homolog O	yes	no	0.326	0.588	0.264	9e-21

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/753 (58%), Positives = 559/753 (74%), Gaps = 46/753 (6%)

Query: 20  RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 68
           RRD +   N + + L            PG   +  +K YE+R+K +P QR+SLD+A +K 
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242

Query: 69  RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 127
           R  DN+ QLLDP+HA++LK+AA   QP+GQ LH T G +S QVQ+R+QQ P S  ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302

Query: 128 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 185
           +NP + PR A  EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK    +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362

Query: 186 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 239
           QL +      QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG  +SVGD++  
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420

Query: 240 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 280
           VGS++Q     LPRGD D+L+K++    Q Q  +                      L++ 
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480

Query: 281 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 340
           Q Q+SN  + QQ+K+  GGS+TMDGS+SN+F+GN+Q  KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540

Query: 341 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 399
           TANT GP+PSS  S  + HTPGDVIS P L H+G SSKS++MFG++G G+LTS  NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600

Query: 400 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 459
           MDRFV+DGSLDDNVESFLS +D D RD V R  +V KGFTFTE   + AST+KV  CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660

Query: 460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 519
            DGK+LA+ GHDKKAVLW T++   K+TLEEHT  ITD+RFSPS  RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720

Query: 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 579
           D +N  YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC  V+K   G
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYK--GG 778

Query: 580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD 639
           +TQ+RFQPR+G+ LAA+  N +++LDVETQ  R  LQGH N ++SVCW+ SG++LASVS+
Sbjct: 779 STQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSE 838

Query: 640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 699
           ++V+VW++G+GS+GEC+HELSC GNKF SCVFHP +PSLLVIGCY++LELWNM+ENKT+T
Sbjct: 839 DMVKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMT 898

Query: 700 LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
           L AH+ L++SLA ST  G+VASASHDK VK+WK
Sbjct: 899 LPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 151/291 (51%), Gaps = 10/291 (3%)

Query: 445  LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504
            ++   TS V S  F+PDG  LA+G  D+   LW   S     T + HT W+  V F+P  
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254

Query: 505  SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564
            S LA+ S+D+TVR+WD  +    L TF GH+  V S+ F+P    +L S   +  +R W 
Sbjct: 1255 SMLASGSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDGS-MLASGSGDQTVRLWE 1312

Query: 565  INNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 623
            I++  C   F+   S  + + F P    + + + +  + +  + +  C     GH N V 
Sbjct: 1313 ISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVG 1372

Query: 624  SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 682
            SV ++  G  LAS S D+ VR+WSI   S G+C++ L    N   S VF P   +LL  G
Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASG 1428

Query: 683  CYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
              + T+ LWN++  + L TL  H   V S+A S+   ++AS S D+ +K+W
Sbjct: 1429 SDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  134 bits (337), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 17/323 (5%)

Query: 417  LSPDDADPRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 471
             SPD    R+RV      ++ ++    + T  Q +     +V+S  FSPDG+ +A+G  D
Sbjct: 891  FSPD----RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDD 946

Query: 472  KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 531
                +W   S T   TLE H   +  V FSP   R+A+ S D+T+++WDT +   + +T 
Sbjct: 947  HTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCT-QTL 1005

Query: 532  TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLG 590
             GH  +V S+ F P  + +    D+ + I+ W   +G+C    +   G  Q + F P   
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKT-IKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064

Query: 591  RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 649
            R+ + + ++ I I D  +  C   L+GH + V SV ++  G+ +AS S D  +++W   S
Sbjct: 1065 RVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAAS 1124

Query: 650  GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVS 708
            G+   C   L   G   HS  F P    +       T+++W+      T TL  H   V 
Sbjct: 1125 GT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQ 1181

Query: 709  SLAASTVNGMVASASHDKCVKIW 731
            S+A S     VAS S DK +KIW
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIW 1204

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 143/278 (51%), Gaps = 10/278 (3%)

Query: 458  FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517
            FSPD ++LA+G +DK   LW  ++    S+LE HT +I  + FSP    LA++S D +VR
Sbjct: 944  FSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVR 1003

Query: 518  VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577
            +W+        +    H+  V ++ FHP  + ++ +   +  ++ W+I+ G C       
Sbjct: 1004 LWNISTGQ-CFQILLEHTDWVYAVVFHPQGK-IIATGSADCTVKLWNISTGQCLKTLSEH 1061

Query: 578  SGATQ-MRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 635
            S     M + P  G++LA A+ +  + + D  T  C   L+GH N+V+S  ++ +GE +A
Sbjct: 1062 SDKILGMAWSPD-GQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIA 1120

Query: 636  SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 694
            + S D+ V++W      +G+C+  L+   N      F P    L      +T+ +W++  
Sbjct: 1121 TCSTDQTVKIW---DWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNT 1177

Query: 695  NKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 731
             K   +   H  LVSS+A S    +VAS S D+ V+IW
Sbjct: 1178 GKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIW 1215

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)

Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 578 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 627
           +   +       GR L +A  +  S I D  T   +++L+GH++ V    +         
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291

Query: 628 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670
                            + G Y A+ S D+ +++W   S   G+C+  L    N   + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348

Query: 671 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 717
           FHP+   LL     +T+++W++   + T T+ AH   V+S+              VNG  
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408

Query: 718 ---------MVASASHDKCVKIW 731
                    ++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 146/323 (45%), Gaps = 53/323 (16%)

Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 578 SGATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 627
           +   +       GR L +A  +  S I D  T   +++L+GH++ V    +         
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291

Query: 628 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670
                            + G Y A+ S D+ +++W   S   G+C+  L    N   + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348

Query: 671 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 717
           FHP+   LL     +T+++W++   + T T+ AH   V+S+              VNG  
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408

Query: 718 ---------MVASASHDKCVKIW 731
                    ++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1

 Score =  109 bits (273), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 133/291 (45%), Gaps = 23/291 (7%)

Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517
           F P   +  +   D    +W  E+   + TL+ HT  + DV F PS   LA+ SAD  V+
Sbjct: 130 FHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVK 189

Query: 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577
           +WD       ++T TGH   V S+ F PS  D L S   +  I+ W ++ G C   F   
Sbjct: 190 LWDFTIYQ-CIKTLTGHDHNVSSVAFLPSG-DFLVSASRDKTIKMWEVSTGYCTKTFIGH 247

Query: 578 SGATQ-MRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCW-------- 627
           +   + +R  P  G +LA+   ++ I I  VE++ C++ L+GH++ V  + W        
Sbjct: 248 TEWIRSVRPSPE-GNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIAWASHPQNLN 306

Query: 628 ------NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 681
                 N+S   ++   D  +R W +  G    C+  L    N     VFHP    LL  
Sbjct: 307 SLPSSMNSSLLLVSGSRDRTIRFWDVNIGI---CLFVLIGHDNWVRQLVFHPHGRLLLSA 363

Query: 682 GCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
              +T+ +W++   +   TL+AH   V+SL  + +     + S D+ + IW
Sbjct: 364 SDDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGSVDQTIHIW 414

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Schistosoma mansoni (taxid: 6183)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 128/280 (45%), Gaps = 9/280 (3%)

Query: 455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 514
           +  FSP G LLA G  DK   +W   S     TLE HT W+  V FSP  + LA+ S D 
Sbjct: 464 AVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDA 523

Query: 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574
           TVR+WD    +     F GH+  V+ + F P    ++ S   +   R W++  G+   V 
Sbjct: 524 TVRLWDVAAAE-ERAVFEGHTHYVLDIAFSPDGS-MVASGSRDGTARLWNVATGTEHAVL 581

Query: 575 KCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 633
           K  +     + F P    + + + +  I + DV T   R  LQ     V S+ ++  G  
Sbjct: 582 KGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSM 641

Query: 634 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 692
           L   SD  V +W + S   GE +H      +   +  F P   +LL  G  + T+ LW++
Sbjct: 642 LVHGSDSTVHLWDVAS---GEALHTFEGHTDWVRAVAFSPDG-ALLASGSDDRTIRLWDV 697

Query: 693 -TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
             + +  TL  H + V S+A       +ASAS D  ++IW
Sbjct: 698 AAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIW 737

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 514
           C FS DGK+LAT        LW     T   + L++H +  TDV FSP    LAT+SADR
Sbjct: 261 CSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADR 320

Query: 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574
           T ++W T+     L+TF GH   +  + FHPS +  L +   +   R W IN G+   + 
Sbjct: 321 TAKLWKTDGT--LLQTFEGHLDRLARVAFHPSGK-YLGTTSYDKTWRLWDINTGAELLLQ 377

Query: 575 KCQSGATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 633
           +  S +   + FQ       +  +++   + D+ T    L  QGH   V SV ++ +G +
Sbjct: 378 EGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYH 437

Query: 634 LAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWN 691
           LAS   D   R+W +      + ++ +    N      + P     L    Y+  + +W+
Sbjct: 438 LASGGEDNQCRIWDL---RMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWS 494

Query: 692 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
             +   + +L+ H+  V+SL  +  +  +A+ SHD+ +K+W
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLW 535

Arabidopsis thaliana (taxid: 3702)

>sp|C3XVT5|LIS1_BRAFL Lissencephaly-1 homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_59218 PE=3 SV=1

 Score =  102 bits (255), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 123/268 (45%), Gaps = 29/268 (10%)

Query: 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505
           +   T  V+   F   GKLLA+   D    LW  ++F    T+  H   ++ V F P+  
Sbjct: 144 LKGHTDAVQDVSFDQQGKLLASCSADMTIKLWDFQTFENIKTMHGHDHNVSSVHFMPNGD 203

Query: 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565
            L ++S D+T+++W+     Y ++TFTGH   V ++  +     LL SC N+  +R W +
Sbjct: 204 FLISASRDKTIKMWELAT-GYCVKTFTGHREWVRTVRVNQDG-SLLASCSNDQTVRVWVV 261

Query: 566 NNGSCAGVFK---------------CQSGATQMRFQPRLGR----ILAAAIENYISILDV 606
            N  C    +               C    +++    + GR    +L+ + +  I + D+
Sbjct: 262 ANKECKAELREHEHVVECIAWAPESCNGHVSEVMGAEKKGRSGPFLLSGSRDKTIKMWDI 321

Query: 607 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECI--HELSCTG 663
            T VC + L GH N V  V W+  G+Y+ S SD+  +RVW   +    + +  H+  CT 
Sbjct: 322 STGVCIMTLVGHDNWVRGVVWHPGGKYIISASDDKTIRVWDYKNKRCQKTLEAHQHFCT- 380

Query: 664 NKFHSCVFHPTFPSLLVIGCYETLELWN 691
               S  FH + P ++     +T+++W 
Sbjct: 381 ----SIDFHRSAPYVITGSVDQTVKVWE 404

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Branchiostoma floridae (taxid: 7739)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	732
280967728	905	LisH-SSDP-WD40 [Malus x domestica]	0.960	0.776	0.705	0.0
297738887	871	unnamed protein product [Vitis vinifera]	0.961	0.808	0.695	0.0
225445366	878	PREDICTED: transcriptional corepressor L	0.961	0.801	0.689	0.0
359484630	883	PREDICTED: transcriptional corepressor L	0.957	0.793	0.681	0.0
356507764	903	PREDICTED: transcriptional corepressor L	0.965	0.782	0.655	0.0
356552537	893	PREDICTED: transcriptional corepressor L	0.960	0.787	0.650	0.0
356515484	892	PREDICTED: transcriptional corepressor L	0.965	0.792	0.649	0.0
356507762	912	PREDICTED: transcriptional corepressor L	0.965	0.775	0.647	0.0
356552535	902	PREDICTED: transcriptional corepressor L	0.960	0.779	0.642	0.0
356563834	903	PREDICTED: transcriptional corepressor L	0.960	0.778	0.644	0.0

>gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica]

 Score =  967 bits (2499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/731 (70%), Positives = 593/731 (81%), Gaps = 28/731 (3%)

Query: 22  DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQL 77
           D TQ  N T +D  LR  P  A +  TKMYE+RLK LP QRD++DDA IK RL DNM+QL
Sbjct: 135 DGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAIKQRLGDNMSQL 193

Query: 78  LDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQEVKTEMNPTMN 133
           LDPNH +++KAA  G QP GQ LHGT G      QQ  SRSQQ P S+Q++K+E+   MN
Sbjct: 194 LDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQDIKSEV---MN 250

Query: 134 PRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ---PYNQLQLQ 190
           PRA   EGSLIG HGSNQG  N+TLKGWPLTG D+ RSG+LQQQ SL Q   PYNQL  Q
Sbjct: 251 PRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQSPQPYNQLLQQ 310

Query: 191 QLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPG 250
           Q ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG  +SV   V  VGS  Q+  P 
Sbjct: 311 QQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPNVGSPAQVGCPV 368

Query: 251 LPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSM 301
           LPRGD D+L+K         +Q   QQ Q YS HPLS Q SQNS+  LQQ +KI+  GSM
Sbjct: 369 LPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQQHEKIMGSGSM 428

Query: 302 TMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPG 361
             DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PSSPS+PSTHT G
Sbjct: 429 APDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPSSPSTPSTHTAG 488

Query: 362 DVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD 421
           DV+S PTL HNG SSKSLLMFGSDG+GS  SAPN+LTD+DRFVDDGSL+DNVESFLS DD
Sbjct: 489 DVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLEDNVESFLSHDD 548

Query: 422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 481
           ADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGHD+KAVLWCTE+
Sbjct: 549 ADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGHDRKAVLWCTET 608

Query: 482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 541
           ++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRTFTGHS+TVMS+
Sbjct: 609 YSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRTFTGHSSTVMSV 668

Query: 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 601
           DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK   GA+Q+RFQP  GR LAAA +N++
Sbjct: 669 DFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFK--GGASQVRFQPCFGRNLAAAADNFV 726

Query: 602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 661
           SILDVETQVCRLKLQGHK+ VHSVCW+ SG+YLASVSD+LVRVW+IGS  KGE IHELSC
Sbjct: 727 SILDVETQVCRLKLQGHKSAVHSVCWDPSGDYLASVSDDLVRVWTIGSSCKGEFIHELSC 786

Query: 662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 721
           +GNKF++CVFHPT+P+LLVIGCYETLELWNMTENKT+TL AHDKLVSSLA S+  G+VAS
Sbjct: 787 SGNKFNTCVFHPTYPALLVIGCYETLELWNMTENKTMTLHAHDKLVSSLAVSSATGLVAS 846

Query: 722 ASHDKCVKIWK 732
           ASHDKCVK+WK
Sbjct: 847 ASHDKCVKLWK 857

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera]

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/736 (69%), Positives = 582/736 (79%), Gaps = 32/736 (4%)

Query: 22  DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSD 72
           D TQ LN +G+ L          P  A    TKMYE+RLK LP QRD LDDA +K R  D
Sbjct: 143 DGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGD 201

Query: 73  NMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEM 128
           NM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S   QQVQSR+QQ  +S+ ++K+EM
Sbjct: 202 NMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGNLQQVQSRNQQLQVSS-DIKSEM 259

Query: 129 NPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----Y 184
           NP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGLDQ RSG+LQQ KSL QP    +
Sbjct: 260 NPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFH 319

Query: 185 NQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAM 244
                QQL+LQAQQNLASPSA+DLE RKLRML NSRN  L +DG  N+VGD+V+ VGS M
Sbjct: 320 QLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPM 378

Query: 245 QIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPLSSQQSQNSNP-LLQQQDKILAG 298
           Q+  P LPRGD D+LIK+QQQQ Q  +        HPLSSQQSQ+SN  LL QQDK++  
Sbjct: 379 QVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGS 438

Query: 299 GSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST- 357
           GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS  S  + 
Sbjct: 439 GSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPST 498

Query: 358 HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFL 417
           HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPNQL D+DRFVDDGSLDDNVESFL
Sbjct: 499 HTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPNQLADVDRFVDDGSLDDNVESFL 558

Query: 418 SPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 477
           + DD DPRD VGRS +  KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKAVLW
Sbjct: 559 AHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLW 618

Query: 478 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 537
           CTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST 
Sbjct: 619 CTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTN 678

Query: 538 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 597
           V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK   G   MRFQPR GR LAAA 
Sbjct: 679 VTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK--GGTNHMRFQPRHGRYLAAAA 736

Query: 598 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-GECI 656
           E  +SILDVETQ CR KLQGHKN V SVCW++SG YLA+VS++LV+VW++GSG K  ECI
Sbjct: 737 EGVVSILDVETQACRQKLQGHKNHV-SVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECI 795

Query: 657 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 716
           HEL  +GNKF+SC FHPT+ SLLVIGCY++LELWNMTENKT+TL AHDKL+SSLA S V 
Sbjct: 796 HELHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVT 855

Query: 717 GMVASASHDKCVKIWK 732
           G+VASASHD CVK+WK
Sbjct: 856 GLVASASHDNCVKLWK 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera]

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/743 (68%), Positives = 581/743 (78%), Gaps = 39/743 (5%)

Query: 22  DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSD 72
           D TQ LN +G+ L          P  A    TKMYE+RLK LP QRD LDDA +K R  D
Sbjct: 143 DGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMK-RFGD 200

Query: 73  NMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQ-EVKTE 127
           NM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S   QQVQSR+QQ  +S+  ++K+E
Sbjct: 201 NMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGNLQQVQSRNQQLQVSSACDIKSE 259

Query: 128 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP---- 183
           MNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGLDQ RSG+LQQ KSL QP    
Sbjct: 260 MNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPF 319

Query: 184 YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSA 243
           +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN  L +DG  N+VGD+V+ VGS 
Sbjct: 320 HQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSP 378

Query: 244 MQIISPGLPRGDNDLLIK-----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQ 291
           MQ+  P LPRGD D+LIK           +Q   QQ Q Y  HPLSSQQSQ+SN  LL Q
Sbjct: 379 MQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQ 438

Query: 292 QDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSS 351
           QDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS
Sbjct: 439 QDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSS 498

Query: 352 PSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 410
             S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPNQL D+DRFVDDGSLD
Sbjct: 499 APSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPNQLADVDRFVDDGSLD 558

Query: 411 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 470
           DNVESFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE CHFS DGKLLATGG 
Sbjct: 559 DNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQ 618

Query: 471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 530
           DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +NP YSLRT
Sbjct: 619 DKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDNPVYSLRT 678

Query: 531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 590
           FTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK   G   MRFQPR G
Sbjct: 679 FTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK--GGTNHMRFQPRHG 736

Query: 591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 650
           R LAAA E  +SILDVETQ CR KLQGHKN V SVCW++SG YLA+VS++LV+VW++GSG
Sbjct: 737 RYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWDSSGSYLATVSEDLVKVWTVGSG 795

Query: 651 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS 709
            K  ECIHEL  +GNKF+SC FHPT+ SLLVIGCY++LELWNMTENKT+TL AHDKL+SS
Sbjct: 796 GKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTENKTMTLPAHDKLISS 855

Query: 710 LAASTVNGMVASASHDKCVKIWK 732
           LA S V G+VASASHD CVK+WK
Sbjct: 856 LAVSNVTGLVASASHDNCVKLWK 878

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/751 (68%), Positives = 579/751 (77%), Gaps = 50/751 (6%)

Query: 22  DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSD 72
           D TQ LN +G+ L          P  A    TKMYE+RLK LP QRD LDDA +K R  D
Sbjct: 143 DGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGD 201

Query: 73  NMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEM 128
           NM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S   QQVQSR+QQ     Q++K+EM
Sbjct: 202 NMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGNLQQVQSRNQQ----LQDIKSEM 256

Query: 129 NPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----Y 184
           NP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGLDQ RSG+LQQ KSL QP    +
Sbjct: 257 NPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFH 316

Query: 185 NQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAM 244
                QQL+LQAQQNLASPSA+DLE RKLRML NSRN  L +DG  N+VGD+V+ VGS M
Sbjct: 317 QLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPM 375

Query: 245 QIISPGLPRGDNDLLIK-----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQ 292
           Q+  P LPRGD D+LIK           +Q   QQ Q Y  HPLSSQQSQ+SN  LL QQ
Sbjct: 376 QVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQ 435

Query: 293 DKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSP 352
           DK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS 
Sbjct: 436 DKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSA 495

Query: 353 SSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDR 402
            S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPNQL          D+DR
Sbjct: 496 PSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPNQLWNNRYNNLQADVDR 555

Query: 403 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG 462
           FVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE CHFS DG
Sbjct: 556 FVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDG 615

Query: 463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522
           KLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +
Sbjct: 616 KLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVD 675

Query: 523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 582
           NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK   G   
Sbjct: 676 NPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK--GGTNH 733

Query: 583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELV 642
           MRFQPR GR LAAA E  +SILDVETQ CR KLQGHKN V SVCW++SG YLA+VS++LV
Sbjct: 734 MRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWDSSGSYLATVSEDLV 792

Query: 643 RVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS 701
           +VW++GSG K  ECIHEL  +GNKF+SC FHPT+ SLLVIGCY++LELWNMTENKT+TL 
Sbjct: 793 KVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTENKTMTLP 852

Query: 702 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
           AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 853 AHDKLISSLAVSNVTGLVASASHDNCVKLWK 883

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507764|ref|XP_003522634.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max]

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/737 (65%), Positives = 573/737 (77%), Gaps = 30/737 (4%)

Query: 21  RDSTQHLNDTGDDL--RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLL 78
           RD    LN + + L   PG A A  TKMYE+RLK LP QRD LDDA +K R  +NM QLL
Sbjct: 172 RDRAHLLNGSANGLVGNPGTANALATKMYEERLK-LPLQRDPLDDAAMKQRFGENMGQLL 230

Query: 79  DPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAA 137
           DPNHA++LK+AA   QPSGQ LHG  G +S QVQ+R+QQ P ST ++K E++P +NPRAA
Sbjct: 231 DPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAA 290

Query: 138 GSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ---PYNQLQL----- 189
           G EGSL+G+ GSNQG+ N+TLKGWPLTGL+Q RSGLLQQQK   Q   P++QLQ+     
Sbjct: 291 GPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQH 350

Query: 190 -QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIIS 248
            QQLML AQQNLASPSA++ ESR+LRML N+RN+GL +D  SN VGD+VS VGS +Q   
Sbjct: 351 QQQLML-AQQNLASPSASE-ESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGG 408

Query: 249 PGLPRGDNDLLIKIQQQQQQLQHYSH-----------HPLSSQQSQNSNPLLQQQDKILA 297
           P  PRGD D+L+K++  Q Q Q               H LS+QQSQ SN  + QQDK+  
Sbjct: 409 PPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQLQQHVLSNQQSQTSNHSMHQQDKVGG 468

Query: 298 GG-SMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPS 356
           GG S+T+DGSMSN+F+GNDQ SKNQI RKRKQ  SSSGPANSSGTANT GP+PSS  S  
Sbjct: 469 GGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTP 528

Query: 357 T-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVES 415
           + HTPGDVIS P L H+G+SSK L+MF +DG G+LTS  NQL D+DRFV+DGSLD+NVES
Sbjct: 529 STHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVES 588

Query: 416 FLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 475
           FLS DD DPRD VGR  +V KGFTF++   + ASTSKV  CHFS DGKLLA+GGHDK+ V
Sbjct: 589 FLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKRVV 648

Query: 476 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 535
           LW T+S   K+TLEEH+  ITDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHS
Sbjct: 649 LWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHS 708

Query: 536 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 595
           T+VMSLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K   G TQMRFQPRLGR LAA
Sbjct: 709 TSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSK--GGTTQMRFQPRLGRYLAA 766

Query: 596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 655
           A EN +SI DVETQ CR  L+GH   V  VCW+ SGE LASVS++ VRVW++GSGS+GEC
Sbjct: 767 AAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWTLGSGSEGEC 826

Query: 656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 715
           +HELSC GNKFH+ VFHPT+PSLLVIGCY++LELWNM+ENKT+TLSAHD L++SLA STV
Sbjct: 827 VHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTV 886

Query: 716 NGMVASASHDKCVKIWK 732
           NG+VASASHDK +K+WK
Sbjct: 887 NGLVASASHDKFLKLWK 903

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552537|ref|XP_003544623.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Glycine max]

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/736 (65%), Positives = 571/736 (77%), Gaps = 33/736 (4%)

Query: 21  RDSTQHLNDTGDDL--RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLL 78
           RD    LN   + L   PG A A  TKMYE+RLK LP QRDSL+DA +K R  D   QLL
Sbjct: 167 RDRAHLLNGGTNGLVGNPGTANALATKMYEERLK-LPLQRDSLEDAAMKQRYGD---QLL 222

Query: 79  DPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAA 137
           DPNHA++LK++A   QPSGQ LHG  G +S QVQ+RSQQ P ST ++K+E+NP +NPRAA
Sbjct: 223 DPNHASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPVLNPRAA 282

Query: 138 GSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQK----SLTQPYNQLQL---- 189
             EGSLI + GSNQG+ N+TLKGWPLTGL+Q RSGLLQQQK       QP++QL +    
Sbjct: 283 APEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQ 342

Query: 190 --QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQII 247
             QQLML AQQNLASPSA+D ++R+LRML N+RN+G+ +DG SN VGD+VS +GS +Q  
Sbjct: 343 HQQQLML-AQQNLASPSASD-DNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAG 400

Query: 248 SPGLPRGDNDLLIKIQQQQ---------QQLQHYSHHPLSSQQSQNSNPLLQQQDKILAG 298
            P  PR D D+L+K++  Q          Q Q    H LS+QQSQ SN  + QQDK+  G
Sbjct: 401 GPAFPRSDTDMLMKLKLAQLQHQQQNANPQQQQLQQHTLSNQQSQTSNHSMHQQDKMGGG 460

Query: 299 G-SMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST 357
           G S+ +DGSMSN+F+GNDQ SKNQ GRKRKQ  +SSGPANSSGTANT GP+PSS  S  +
Sbjct: 461 GGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPS 519

Query: 358 -HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESF 416
            HTPGDV+S P L H+G+SSK L+MF +DG G+LTS  NQL D+DRFV+DGSLDDNVESF
Sbjct: 520 THTPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLADVDRFVEDGSLDDNVESF 579

Query: 417 LSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 476
           LS DD DPRD VGR  +V KGFTF+E   + AST+KV  CHFS DGKLLA+GGHDKKAVL
Sbjct: 580 LSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGGHDKKAVL 639

Query: 477 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 536
           W T+S   K+TLEEH   ITDVRFSPS+ RLATSS D+TVRVWD ENP YSLRTFTGHS+
Sbjct: 640 WFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLRTFTGHSS 699

Query: 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 596
           +VMSLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K   G  QMRFQPRLGR LAAA
Sbjct: 700 SVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSK--GGTAQMRFQPRLGRYLAAA 757

Query: 597 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI 656
            EN +SILDVETQ CR  L+GH   +HSVCW+ SGE+LASVS++ VRVW++GSGS+GEC+
Sbjct: 758 AENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECV 817

Query: 657 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 716
           HELSC GNKFHSCVFHPT+ SLLV+GCY++LELWNMTENKT+TLSAH+ L+++LA STVN
Sbjct: 818 HELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVSTVN 877

Query: 717 GMVASASHDKCVKIWK 732
           G+VASASHDK VK+WK
Sbjct: 878 GLVASASHDKFVKLWK 893

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/748 (64%), Positives = 571/748 (76%), Gaps = 41/748 (5%)

Query: 21  RDSTQHLNDTGDDL--RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLL 78
           RD    LN + + L   PG A A  TKMYE+RLK LP QRDSLDDA  K R  +NM QLL
Sbjct: 150 RDRPHLLNGSANGLVGNPGTANALATKMYEERLK-LPLQRDSLDDAATKQRFGENMGQLL 208

Query: 79  DPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAA 137
           DPNHA +LK+AA   QPSGQ LHG  G +S QVQ+R+QQ P ST ++K E++P +NPRA 
Sbjct: 209 DPNHAPILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAV 268

Query: 138 GSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ---PYNQLQL----- 189
           G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q RSGLLQQQK   Q   P++QLQ+     
Sbjct: 269 GPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQH 328

Query: 190 -QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIIS 248
            QQLML AQQNLASPSA++ ESR+LRML N+RN+GL +DG SN VGD+VS VGS +Q   
Sbjct: 329 QQQLML-AQQNLASPSASE-ESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPLQGGG 386

Query: 249 PGLPRGDNDLLIKIQQQQQQLQHYSH------------HPLSSQQSQNSNPLLQQQDKIL 296
           P  PRGD D+L+K++  Q Q Q                H LS+QQSQ SN  + QQDK+ 
Sbjct: 387 PPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQDKVG 446

Query: 297 AGG--SMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSS 354
            GG  S+T+DGSMSN+F+GNDQ SKNQIGRKRKQ  SSSGPANSSGTANT GP+PSS  S
Sbjct: 447 GGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPS 506

Query: 355 PST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFV 404
             + HTPGDVIS P L H+G+SSK L+MF +DG G+LTS  NQL          D+DRFV
Sbjct: 507 TPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFV 566

Query: 405 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL 464
           +DGSLD+NVESFLS DD DPRD VGR  +V KGFTF++   + ASTSKV  CHFS DGKL
Sbjct: 567 EDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKL 626

Query: 465 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 524
           LA+GGHDKK VLW T+S   K+TLEEH+  ITDVRFSPS+ RLATSS D+TVRVWD +NP
Sbjct: 627 LASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNP 686

Query: 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR 584
            YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K   G TQMR
Sbjct: 687 GYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSK--GGTTQMR 744

Query: 585 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 644
           FQPRLGR LAAA EN +SI DVETQVCR  L+GH   V  VCW+ SGE LASVS++ VRV
Sbjct: 745 FQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSVRV 804

Query: 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD 704
           W++GSGS GEC+HELSC GNKFH  VFHPT+PSLLVIGCY++LELWNM+ENKT+TLSAHD
Sbjct: 805 WTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHD 864

Query: 705 KLVSSLAASTVNGMVASASHDKCVKIWK 732
            L++SLA STVNG+VASASHDK +K+WK
Sbjct: 865 GLITSLAVSTVNGLVASASHDKFLKLWK 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507762|ref|XP_003522633.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/746 (64%), Positives = 573/746 (76%), Gaps = 39/746 (5%)

Query: 21  RDSTQHLNDTGDDL--RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLL 78
           RD    LN + + L   PG A A  TKMYE+RLK LP QRD LDDA +K R  +NM QLL
Sbjct: 172 RDRAHLLNGSANGLVGNPGTANALATKMYEERLK-LPLQRDPLDDAAMKQRFGENMGQLL 230

Query: 79  DPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAA 137
           DPNHA++LK+AA   QPSGQ LHG  G +S QVQ+R+QQ P ST ++K E++P +NPRAA
Sbjct: 231 DPNHASILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAA 290

Query: 138 GSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ---PYNQLQL----- 189
           G EGSL+G+ GSNQG+ N+TLKGWPLTGL+Q RSGLLQQQK   Q   P++QLQ+     
Sbjct: 291 GPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQH 350

Query: 190 -QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIIS 248
            QQLML AQQNLASPSA++ ESR+LRML N+RN+GL +D  SN VGD+VS VGS +Q   
Sbjct: 351 QQQLML-AQQNLASPSASE-ESRRLRMLLNNRNIGLNKDSLSNPVGDVVSNVGSPLQGGG 408

Query: 249 PGLPRGDNDLLIKIQQQQQQLQHYSH-----------HPLSSQQSQNSNPLLQQQDKILA 297
           P  PRGD D+L+K++  Q Q Q               H LS+QQSQ SN  + QQDK+  
Sbjct: 409 PPFPRGDTDMLMKLKLAQLQQQQQQSSTNAQQQQLQQHVLSNQQSQTSNHSMHQQDKVGG 468

Query: 298 GG-SMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPS 356
           GG S+T+DGSMSN+F+GNDQ SKNQI RKRKQ  SSSGPANSSGTANT GP+PSS  S  
Sbjct: 469 GGGSVTVDGSMSNSFRGNDQVSKNQIVRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTP 528

Query: 357 T-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDD 406
           + HTPGDVIS P L H+G+SSK L+MF +DG G+LTS  NQL          D+DRFV+D
Sbjct: 529 STHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVED 588

Query: 407 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 466
           GSLD+NVESFLS DD DPRD VGR  +V KGFTF++   + ASTSKV  CHFS DGKLLA
Sbjct: 589 GSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLA 648

Query: 467 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 526
           +GGHDK+ VLW T+S   K+TLEEH+  ITDVRFSPS+ RLATSS D+TVRVWD +NP Y
Sbjct: 649 SGGHDKRVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGY 708

Query: 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 586
           SLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K   G TQMRFQ
Sbjct: 709 SLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSK--GGTTQMRFQ 766

Query: 587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWS 646
           PRLGR LAAA EN +SI DVETQ CR  L+GH   V  VCW+ SGE LASVS++ VRVW+
Sbjct: 767 PRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVDCVCWDPSGELLASVSEDSVRVWT 826

Query: 647 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 706
           +GSGS+GEC+HELSC GNKFH+ VFHPT+PSLLVIGCY++LELWNM+ENKT+TLSAHD L
Sbjct: 827 LGSGSEGECVHELSCNGNKFHASVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGL 886

Query: 707 VSSLAASTVNGMVASASHDKCVKIWK 732
           ++SLA STVNG+VASASHDK +K+WK
Sbjct: 887 ITSLAVSTVNGLVASASHDKFLKLWK 912

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552535|ref|XP_003544622.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max]

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/745 (64%), Positives = 571/745 (76%), Gaps = 42/745 (5%)

Query: 21  RDSTQHLNDTGDDL--RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLL 78
           RD    LN   + L   PG A A  TKMYE+RLK LP QRDSL+DA +K R  D   QLL
Sbjct: 167 RDRAHLLNGGTNGLVGNPGTANALATKMYEERLK-LPLQRDSLEDAAMKQRYGD---QLL 222

Query: 79  DPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAA 137
           DPNHA++LK++A   QPSGQ LHG  G +S QVQ+RSQQ P ST ++K+E+NP +NPRAA
Sbjct: 223 DPNHASILKSSAATGQPSGQVLHGAAGAMSSQVQARSQQLPGSTPDIKSEINPVLNPRAA 282

Query: 138 GSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQK----SLTQPYNQLQL---- 189
             EGSLI + GSNQG+ N+TLKGWPLTGL+Q RSGLLQQQK       QP++QL +    
Sbjct: 283 APEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQ 342

Query: 190 --QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQII 247
             QQLML AQQNLASPSA+D ++R+LRML N+RN+G+ +DG SN VGD+VS +GS +Q  
Sbjct: 343 HQQQLML-AQQNLASPSASD-DNRRLRMLLNNRNIGVTKDGLSNPVGDIVSNLGSPLQAG 400

Query: 248 SPGLPRGDNDLLIKIQQQQ---------QQLQHYSHHPLSSQQSQNSNPLLQQQDKILAG 298
            P  PR D D+L+K++  Q          Q Q    H LS+QQSQ SN  + QQDK+  G
Sbjct: 401 GPAFPRSDTDMLMKLKLAQLQHQQQNANPQQQQLQQHTLSNQQSQTSNHSMHQQDKMGGG 460

Query: 299 G-SMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST 357
           G S+ +DGSMSN+F+GNDQ SKNQ GRKRKQ  +SSGPANSSGTANT GP+PSS  S  +
Sbjct: 461 GGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPSTPS 519

Query: 358 -HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDDG 407
            HTPGDV+S P L H+G+SSK L+MF +DG G+LTS  NQL          D+DRFV+DG
Sbjct: 520 THTPGDVMSMPALPHSGSSSKPLMMFSADGSGTLTSPSNQLWDDKDLELQADVDRFVEDG 579

Query: 408 SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 467
           SLDDNVESFLS DD DPRD VGR  +V KGFTF+E   + AST+KV  CHFS DGKLLA+
Sbjct: 580 SLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLAS 639

Query: 468 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 527
           GGHDKKAVLW T+S   K+TLEEH   ITDVRFSPS+ RLATSS D+TVRVWD ENP YS
Sbjct: 640 GGHDKKAVLWFTDSLKQKATLEEHAYLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYS 699

Query: 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP 587
           LRTFTGHS++VMSLDFHP+K+DL+CSCD + EIRYWSINNGSCA V K   G  QMRFQP
Sbjct: 700 LRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSK--GGTAQMRFQP 757

Query: 588 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 647
           RLGR LAAA EN +SILDVETQ CR  L+GH   +HSVCW+ SGE+LASVS++ VRVW++
Sbjct: 758 RLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTL 817

Query: 648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV 707
           GSGS+GEC+HELSC GNKFHSCVFHPT+ SLLV+GCY++LELWNMTENKT+TLSAH+ L+
Sbjct: 818 GSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLI 877

Query: 708 SSLAASTVNGMVASASHDKCVKIWK 732
           ++LA STVNG+VASASHDK VK+WK
Sbjct: 878 AALAVSTVNGLVASASHDKFVKLWK 902

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563834|ref|XP_003550163.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/738 (64%), Positives = 567/738 (76%), Gaps = 35/738 (4%)

Query: 21  RDSTQHLNDTGDDL--RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLL 78
           RD    LN   + L   P  A A  TKMYE+RLK LP QRDSL+DA +K R  D   Q+L
Sbjct: 175 RDRAHLLNGGTNGLVGNPSTANALATKMYEERLK-LPLQRDSLEDAAMKQRFGD---QIL 230

Query: 79  DPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAA 137
           DPNHA++LK++A   QPSGQ LHG  G +S QVQ+RSQQ P ST ++K+E+NP +NPRAA
Sbjct: 231 DPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAA 290

Query: 138 GSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQK----SLTQPYNQLQL---- 189
           G EGSLI + GSNQG+ N+TLKGWPLTGL+Q RSGLLQQQK       Q ++QL +    
Sbjct: 291 GPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQQFHQLPMLTPQ 350

Query: 190 --QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQII 247
             QQLML AQQNLASPSA+D +SR++RML N+RNMG+ +DG SN VGD+VS VGS +Q  
Sbjct: 351 HQQQLML-AQQNLASPSASD-DSRRIRMLLNNRNMGVTKDGLSNPVGDIVSNVGSPLQAG 408

Query: 248 SPGLPRGDNDLLIKIQQQQQQLQHYS----------HHPLSSQQSQNSNPLLQQQDKILA 297
            P  PR D D+L+K++  Q Q Q              H LS+QQSQ SN  + QQDK+  
Sbjct: 409 GPAFPRSDTDMLMKLKLAQLQHQQQQNANPPQQQLQQHTLSNQQSQTSNHSMHQQDKMGG 468

Query: 298 GGS--MTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSP 355
           GG   + +DGSMSN+F+GNDQ SKNQ GRKRKQ  +SSGPANSSGTANT GP+PSS  S 
Sbjct: 469 GGGSSVNVDGSMSNSFRGNDQVSKNQTGRKRKQP-ASSGPANSSGTANTAGPSPSSAPST 527

Query: 356 ST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVE 414
            + HTPGDV+S P L H+G+SSK L+MF +DG G+LTS  NQL D+DRFV+DGSLDDNVE
Sbjct: 528 PSTHTPGDVMSMPVLPHSGSSSKPLMMFSADGAGTLTSPSNQLADVDRFVEDGSLDDNVE 587

Query: 415 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 474
           SFLSPDD D RD VGR  +V KGFTF+E   + AST+KV  CHFS DGKLLA+GGHDKKA
Sbjct: 588 SFLSPDDTDLRDTVGRCMDVSKGFTFSEINSVRASTTKVGCCHFSSDGKLLASGGHDKKA 647

Query: 475 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 534
           VLW T+S   K+TLEEH   ITDVRFSPS+ RLATSS D+TVRVWD ENP YSLRTFTGH
Sbjct: 648 VLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSHDKTVRVWDVENPGYSLRTFTGH 707

Query: 535 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA 594
           S+ VMSLDFHP+K+DL+CSCD + EIRYWSINNG+CA V K   GA QMRFQPRLGR LA
Sbjct: 708 SSPVMSLDFHPNKDDLICSCDADGEIRYWSINNGNCARVSK--GGAVQMRFQPRLGRYLA 765

Query: 595 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE 654
           AA EN +SILDVETQ  R  L+GH   + SVCW+ SGE+LASVS++ VRVW++GSGS+GE
Sbjct: 766 AAAENVVSILDVETQASRYSLKGHTKSIRSVCWDPSGEFLASVSEDSVRVWTLGSGSEGE 825

Query: 655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 714
           C+HELSC GNKFHSCVFHPT+ SLLV+GCY++LELWNMTENKT+TLSAH+ L+++LA ST
Sbjct: 826 CVHELSCNGNKFHSCVFHPTYSSLLVVGCYQSLELWNMTENKTMTLSAHEGLIAALAVST 885

Query: 715 VNGMVASASHDKCVKIWK 732
           VNG+VASASHDK VK+WK
Sbjct: 886 VNGLVASASHDKFVKLWK 903

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	732
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.403	0.883	0.277	2.9e-26
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.374	0.817	0.274	6.2e-26
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.367	0.619	0.326	8.5e-26
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.377	0.896	0.282	5.9e-25
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.377	0.826	0.282	5.9e-25
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.377	0.826	0.282	5.9e-25
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.377	0.826	0.282	5.9e-25
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.377	0.826	0.282	5.9e-25
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.377	0.826	0.282	5.9e-25
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.387	0.208	0.285	6.4e-25

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 304 (112.1 bits), Expect = 2.9e-26, P = 2.9e-26
 Identities = 87/313 (27%), Positives = 149/313 (47%)

Query:   430 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 489
             + A V   +T  +F L    T  V S  FSP+G+ LA+   DK   +W       + T+ 
Sbjct:    27 KPAPVKPNYTL-KFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 84

Query:   490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 549
              H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P + +
Sbjct:    85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSN 142

Query:   550 LLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET 608
             L+ S   +  +R W +  G C       S   + + F      I++++ +    I D  +
Sbjct:   143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

Query:   609 QVCRLKLQGHKNQ-VHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKF 666
               C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +C  N+ 
Sbjct:   203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEK 259

Query:   667 HSCVF---HPTFPSLLVIGCYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVAS 721
             + C+F     T    +V G  + L  +WN+ T+     L  H  +V S A      ++AS
Sbjct:   260 Y-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIAS 318

Query:   722 AS--HDKCVKIWK 732
             A+  +DK +K+WK
Sbjct:   319 AALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 301 (111.0 bits), Expect = 6.2e-26, P = 6.2e-26
 Identities = 80/291 (27%), Positives = 142/291 (48%)

Query:   453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 512
             + S  FSPDGK LA+   DK   +W       + TLE H + I+D+ +S     + ++S 
Sbjct:    49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108

Query:   513 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 572
             D+T+++WD E+    ++T  GH   V  + F+P + +L+ S   +  +R W +N G C  
Sbjct:   109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTK 166

Query:   573 VFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTS 630
             +    S   T + F      +++ + +  + I D  T Q+          +V  V ++ +
Sbjct:   167 MISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPN 226

Query:   631 GEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHP---TFPSLLVIGCYE 685
             G++ LA   D  +R+WS  +  K  C+   + TG+K    C+F     T    +V G  +
Sbjct:   227 GKFVLAGTLDNTLRLWSYNNNKK--CLK--TYTGHKNEKYCIFSTFSVTCGKWIVTGSED 282

Query:   686 TL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
              L  ++N+ T     TL+ H+ +V ++A      ++AS +   D+ VKIWK
Sbjct:   283 NLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 310 (114.2 bits), Expect = 8.5e-26, P = 8.5e-26
 Identities = 97/297 (32%), Positives = 145/297 (48%)

Query:   442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501
             E Q +   +  +E+  FSPDG+LLA+G +D    LW   S  +K TLE H+  +  V FS
Sbjct:    33 ELQTLEGHSDWIETVTFSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFS 92

Query:   502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561
             P+   LA+ S+D T+++W++ + D    T  GHS  V S+ F P           N ++ 
Sbjct:    93 PNGQLLASGSSDTTIKLWNSAS-DSLKHTMEGHSDRVESVAFSP-----------NGQL- 139

Query:   562 YWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAA-AIENYISILDVETQVCRLK--LQG 617
              W+   GS     +  S     + F P  G++LA+ + E  I + D  T  C LK  L G
Sbjct:   140 -WNPAIGSLKHTIEGHSDWVLSVAFSPD-GQLLASGSAEKTIKLWDSAT--CGLKHTLGG 195

Query:   618 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 676
             H N V  + ++  G  LAS S D  +++W   SGS     H L    NK  S  F P   
Sbjct:   196 HSNWVLPLVFSPDGRLLASGSNDATIKLWDPPSGSLK---HTLEGHSNKIESLAFSPN-G 251

Query:   677 SLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
              LL  G  + T++LW+  T +   TL  H  +V S+  S  + ++ S S D  +K+W
Sbjct:   252 QLLASGSSDATIKLWDTATGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 83/294 (28%), Positives = 141/294 (47%)

Query:   450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78

Query:   510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:    79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136

Query:   570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 627
             C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196

Query:   628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 682
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   197 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 251

Query:   683 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 83/294 (28%), Positives = 141/294 (47%)

Query:   450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 627
             C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 682
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   683 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 83/294 (28%), Positives = 141/294 (47%)

Query:   450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 627
             C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 682
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   683 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 292 (107.8 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 83/294 (28%), Positives = 141/294 (47%)

Query:   450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 627
             C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 682
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   683 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 83/294 (28%), Positives = 141/294 (47%)

Query:   450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 627
             C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 682
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   683 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 83/294 (28%), Positives = 141/294 (47%)

Query:   450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 627
             C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 682
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   683 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 319 (117.4 bits), Expect = 6.4e-25, P = 6.4e-25
 Identities = 84/294 (28%), Positives = 142/294 (48%)

Query:   442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501
             E Q +      VES  FSPDGK L +G +D    +W   +  +  TL+ H+  +  + FS
Sbjct:   742 EQQTLENHLGPVESVVFSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFS 801

Query:   502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561
             P    LA+ S D T+ +WD+   +  L+TF GH  ++ S+ F P  ++L  S  ++S I+
Sbjct:   802 PDGKLLASGSYDNTIDLWDSATGEL-LQTFEGHPHSIWSVAFAPDGKEL-ASASDDSTIK 859

Query:   562 YWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK 619
              W +  G         S + + + F P  G++LA++ +++ I + +  T   +  L+G  
Sbjct:   860 IWDLATGELQQTLDSHSQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRS 918

Query:   620 NQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 678
               V SV ++  G+ LAS S++  V++W+  +G   E +  L        S  F P    L
Sbjct:   919 GWVKSVAFSPDGKKLASGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQL 975

Query:   679 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
                    T++LWN T  +   T   HD  + ++A S     + S S D  +K+W
Sbjct:   976 ASSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FUY2	LEUNG_ARATH	No assigned EC number	0.5830	0.9658	0.7593	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016815001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (897 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	732
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-62
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-15
smart00320	40	smart00320, WD40, WD40 repeats	2e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  209 bits (534), Expect = 3e-62
 Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 12/292 (4%)

Query: 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 505
           +   T  V    FSPDGKLLATG  D    +W  E+  +  TL+ HT  + DV  S   +
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565
            LA+ S+D+T+R+WD E  +  +RT TGH++ V S+ F P    +L S   +  I+ W +
Sbjct: 65  YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 566 NNGSCAGVFKCQSGATQM-RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 624
             G C    +  +       F P    + +++ +  I + D+ T  C   L GH  +V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 625 VCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 683
           V ++  GE  L+S SD  +++W +   S G+C+  L    N  +S  F P     L+   
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLASG 237

Query: 684 YE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
            E  T+ +W++   + + TLS H   V+SLA S     +AS S D  ++IW 
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  147 bits (373), Expect = 1e-39
 Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 14/253 (5%)

Query: 485 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 544
           + TL+ HT  +T V FSP    LAT S D T++VWD E  +  LRT  GH+  V  +   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60

Query: 545 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY-IS 602
                L     + + IR W +  G C        S  + + F P  GRIL+++  +  I 
Sbjct: 61  ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIK 118

Query: 603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 661
           + DVET  C   L+GH + V+SV ++  G ++AS S D  +++W + +G    C+  L  
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---CVATL-- 173

Query: 662 TGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 718
           TG+    +S  F P    LL      T++LW+++  K L TL  H+  V+S+A S    +
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233

Query: 719 VASASHDKCVKIW 731
           +AS S D  +++W
Sbjct: 234 LASGSEDGTIRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  124 bits (310), Expect = 4e-30
 Identities = 90/354 (25%), Positives = 142/354 (40%), Gaps = 22/354 (6%)

Query: 392 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 451
           S   + +++   ++  SL     S               S                    
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66

Query: 452 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 508
            + S  FSPDG+LL +G  D    LW        +KS    H   ++ +   SP  + + 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 509 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566
              SS D TV++WD   P   +RT  GHS +V SL F P  + L      +  I+ W + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 567 NGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE-NYISILDVET-QVCRLKLQGHKNQVH 623
            G         +   + + F P  G ++A+      I + D+ T ++ R  L GH + V 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 624 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 682
           S  ++  G  LAS S D  +R+W + S S    +  LS   +   S  F P    L    
Sbjct: 247 S-SFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 683 CYETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 732
              T+ LW++   K   +LTL  H+  VSSL+ S    ++ S  S D  +++W 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  112 bits (280), Expect = 3e-26
 Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 3/193 (1%)

Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 516
           FSPDG LLA+G  D    LW   S +    TL  H+  +  V FSP    LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 517 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 575
           R+WD E     S  T  GH   V SL F P    L+    ++  IR W +  G      +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 635
             S    + F P    + + + +  + + D+ T      L GH ++V S+ ++  G+ LA
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428

Query: 636 SVS-DELVRVWSI 647
           S S D  +R+W +
Sbjct: 429 SGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  107 bits (268), Expect = 1e-25
 Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 9/209 (4%)

Query: 527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRF 585
             RT  GH+  V  + F P    LL +   +  I+ W +  G      K  +G    +  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 644
                 + + + +  I + D+ET  C   L GH + V SV ++  G  L+S S D+ ++V
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSA 702
           W +     G+C+  L    +  +S  F P   + +     + T++LW++   K + TL+ 
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175

Query: 703 HDKLVSSLAASTVNGMVASASHDKCVKIW 731
           H   V+S+A S     + S+S D  +K+W
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 97.1 bits (240), Expect = 3e-21
 Identities = 78/299 (26%), Positives = 123/299 (41%), Gaps = 50/299 (16%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 496
           T      +   T  V S  FSPDG  L+A+G  D    LW  +    ++STL  H+  + 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 556
              FSP  S LA+ S+D T+R+WD  +    LRT +GHS++V+S+ F P    LL S  +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304

Query: 557 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 616
           +  +R W +  G                                         +  L L+
Sbjct: 305 DGTVRLWDLETGKL---------------------------------------LSSLTLK 325

Query: 617 GHKNQVHSVCWNTSGEYLAS--VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674
           GH+  V S+ ++  G  L S    D  +R+W + +G   + +       +   S  F P 
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----GHSNVLSVSFSPD 381

Query: 675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
              +       T+ LW+++    L  L  H   V+SL  S     +AS S D  +++W 
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 31/82 (37%), Positives = 42/82 (51%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 498
           T      +    + V S  FSPDG LLA+G  D    +W   +     TL  HT  +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267

Query: 499 RFSPSLSRLATSSADRTVRVWD 520
            +SP   RLA+ SAD T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 481 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520
           S  +  TL+ HT  +T V FSP    LA+ S D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520
             +  TL+ HT  +T V FSP  + LA+ S D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 510
           S V S  FSPDG+++++G  D    LW   + ++   L+ HT  +T + FSP    LA+ 
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Query: 511 SADRTVRVWDTENPDYSL 528
           S+D T+R+WD +    S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 488 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 539
           L+ HT  I D++F+P  S  LA+ S D T+RVW+  + D S++          GH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 540 SLDFHPSKEDLLCSCDNNSEIRYWSINN 567
            +D++P    ++CS   +S +  W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 50.5 bits (120), Expect = 3e-06
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 27/223 (12%)

Query: 449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------------W 494
           S++ V +  F  DG+  AT G +KK  ++  ES  +K   + H                W
Sbjct: 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICW 540

Query: 495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 554
            + ++     S++A+S+ +  V+VWD       +     H   V S+D+  +   LL S 
Sbjct: 541 NSYIK-----SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASG 594

Query: 555 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN----YISILDVETQV 610
            ++  ++ WSIN G   G  K ++    ++F    GR LA    +    Y  + + +  +
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 611 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 653
           C   + GH   V  V +  S   ++S +D  +++W +     G
Sbjct: 655 C--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646
           +      L+GH   V SV ++  G+YLAS S D  +++W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 610 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646
                L+GH   V SV ++  G  LAS S D  VRVW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 495 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 547
           I DV F+P    +L T+S D T+  W       T+N    +    GH+  V  + FHPS 
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 548 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 578
            ++L S   +  +  W +  G    V KC S
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHS 168

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 477
           +    + +   T  V S  FSPDGK LA+G  D    LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 694 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
                TL  H   V+S+A S    ++AS S D  V++W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 477
           +   T  V S  FSPDG LLA+G  D    +W
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 693 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
           +     TL  H   V+S+A S     +AS S D  +K+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564
           LRT  GH+  V S+ F P   +LL S  ++  +R W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 59/309 (19%), Positives = 78/309 (25%), Gaps = 38/309 (12%)

Query: 88  AAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGS----- 142
           +     QP GQ        S Q QS+        Q         MN    G  G      
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195

Query: 143 ----LIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLT-----------QPYNQL 187
                +   G           G       Q +  L  QQ+              Q   Q 
Sbjct: 196 MGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQ 255

Query: 188 QLQQLMLQAQQNLAS--------PSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 239
           Q Q  M   Q             P     +  +L ML N   M     G     G  +  
Sbjct: 256 QGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQ--MQQMPGGGQGGPGQPMGP 313

Query: 240 VGSAMQIISPGLPRGDNDLL------IKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQD 293
                  +  G       ++      +K  + +             QQ  N     QQQ 
Sbjct: 314 PPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQM 373

Query: 294 KILAGGSMTMDGSMSNTFQGN-DQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSP 352
               G    M        QGN      N + + +   +SS  P     T  +  P P  P
Sbjct: 374 NQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSM-PQPPQP 432

Query: 353 SSPSTHTPG 361
           S PS   PG
Sbjct: 433 SVPSPGGPG 441

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 699 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
           TL  H   V+ +A S    ++A+ S D  +K+W 
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD 37

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564
           L+T  GH+  V S+ F P     L S  ++  I+ W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	732
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
PTZ00421	493	coronin; Provisional	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.87
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
PRK11028	330	6-phosphogluconolactonase; Provisional	99.81
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG1273	405	consensus WD40 repeat protein [General function pr	99.81
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG4227	609	consensus WD40 repeat protein [General function pr	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.74
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.74
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.74
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG1963	792	consensus WD40 repeat protein [General function pr	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.69
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.68
PRK03629	429	tolB translocation protein TolB; Provisional	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG2139	445	consensus WD40 repeat protein [General function pr	99.65
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.64
PRK04922	433	tolB translocation protein TolB; Provisional	99.64
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.64
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.63
KOG4227	609	consensus WD40 repeat protein [General function pr	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.59
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.58
KOG2315	566	consensus Predicted translation initiation factor	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.56
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.52
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.51
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.5
KOG2139	445	consensus WD40 repeat protein [General function pr	99.5
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
PRK04792	448	tolB translocation protein TolB; Provisional	99.49
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.49
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.48
KOG1310	758	consensus WD40 repeat protein [General function pr	99.48
PRK00178	430	tolB translocation protein TolB; Provisional	99.47
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.43
KOG1334	559	consensus WD40 repeat protein [General function pr	99.43
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.41
PRK01029	428	tolB translocation protein TolB; Provisional	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.36
KOG4547	541	consensus WD40 repeat-containing protein [General	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
KOG2315	566	consensus Predicted translation initiation factor	99.31
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.27
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.26
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.24
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.21
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.19
PRK04043	419	tolB translocation protein TolB; Provisional	99.18
KOG4547	541	consensus WD40 repeat-containing protein [General	99.18
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.17
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.15
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.15
COG4946	668	Uncharacterized protein related to the periplasmic	99.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.14
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.11
KOG2314	698	consensus Translation initiation factor 3, subunit	99.1
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.08
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
COG4946	668	Uncharacterized protein related to the periplasmic	99.07
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.07
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.02
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.02
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.01
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.99
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.87
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.86
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.84
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.84
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.8
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.8
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.71
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.68
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.66
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.62
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.61
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.58
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.57
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.54
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.53
PRK02888	635	nitrous-oxide reductase; Validated	98.51
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.51
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.49
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.47
COG3391	381	Uncharacterized conserved protein [Function unknow	98.46
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.44
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.41
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.38
KOG2695	425	consensus WD40 repeat protein [General function pr	98.36
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.36
KOG2695	425	consensus WD40 repeat protein [General function pr	98.34
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.32
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.32
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.3
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.29
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.29
KOG3621	726	consensus WD40 repeat-containing protein [General	98.29
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.27
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.24
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.23
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.19
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.19
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.18
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.17
PRK02888	635	nitrous-oxide reductase; Validated	98.16
COG3391	381	Uncharacterized conserved protein [Function unknow	98.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.13
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.1
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.09
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.04
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.0
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.0
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.0
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.97
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.92
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.9
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.9
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.83
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.82
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.71
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.7
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.69
PRK10115	686	protease 2; Provisional	97.68
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.63
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.6
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.53
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.45
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.44
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.41
PRK13616	591	lipoprotein LpqB; Provisional	97.41
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.35
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.35
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.34
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.26
COG5276	370	Uncharacterized conserved protein [Function unknow	97.26
KOG3621	726	consensus WD40 repeat-containing protein [General	97.21
PRK13616	591	lipoprotein LpqB; Provisional	97.19
PRK10115	686	protease 2; Provisional	97.15
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.13
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.1
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.1
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.07
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.06
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.02
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.01
PHA02713	557	hypothetical protein; Provisional	96.99
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.98
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.92
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.87
KOG2395	644	consensus Protein involved in vacuole import and d	96.85
PRK13684	334	Ycf48-like protein; Provisional	96.84
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.81
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.8
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.79
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.78
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.76
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.74
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.7
KOG2395	644	consensus Protein involved in vacuole import and d	96.67
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.62
PHA02713	557	hypothetical protein; Provisional	96.51
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.51
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.5
KOG2444	238	consensus WD40 repeat protein [General function pr	96.47
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.4
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.27
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.2
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.18
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.17
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.11
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.07
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.82
PHA03098	534	kelch-like protein; Provisional	95.8
COG5276	370	Uncharacterized conserved protein [Function unknow	95.69
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.6
PLN02153	341	epithiospecifier protein	95.55
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.41
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.38
KOG2444	238	consensus WD40 repeat protein [General function pr	95.34
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.34
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.21
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.14
PRK13684	334	Ycf48-like protein; Provisional	95.12
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.06
PHA03098	534	kelch-like protein; Provisional	95.04
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.0
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.97
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.75
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.6
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.51
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.36
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.19
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.14
PHA02790	480	Kelch-like protein; Provisional	94.07
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	93.9
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.89
PHA02790	480	Kelch-like protein; Provisional	93.75
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.69
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.6
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.53
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.5
COG1520	370	FOG: WD40-like repeat [Function unknown]	93.48
KOG3598	2220	consensus Thyroid hormone receptor-associated prot	93.48
KOG2247	615	consensus WD40 repeat-containing protein [General	93.46
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.43
PLN02193	470	nitrile-specifier protein	93.26
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.25
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.2
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.18
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.97
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.9
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.8
PLN02153	341	epithiospecifier protein	92.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.65
COG3292	671	Predicted periplasmic ligand-binding sensor domain	92.47
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.43
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.41
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.35
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.3
COG5167	776	VID27 Protein involved in vacuole import and degra	92.29
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.97
COG1770	682	PtrB Protease II [Amino acid transport and metabol	91.95
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.91
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.74
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	91.67
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	91.4
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.95
PLN02193	470	nitrile-specifier protein	90.93
COG5167	776	VID27 Protein involved in vacuole import and degra	90.9
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	90.58
PRK05560	805	DNA gyrase subunit A; Validated	90.57
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.56
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.55
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	90.51
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.26
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.14
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	89.97
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	89.91
KOG2247	615	consensus WD40 repeat-containing protein [General	89.41
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	89.39
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	89.39
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.34
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.22
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.19
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	88.8
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.69
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	88.64
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.64
PRK05560	805	DNA gyrase subunit A; Validated	88.43
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.05
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.92
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	87.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.7
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	87.69
TIGR01063	800	gyrA DNA gyrase, A subunit. This model describes t	87.22
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.95
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	86.33

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-44  Score=369.54  Aligned_cols=302  Identities=24%  Similarity=0.395  Sum_probs=274.5

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-EEeccCCCceEEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRF  500 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~V~~l~f  500 (732)
                      ..+.|.++|+||..+.-   +..+.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..+.+|...|++++|
T Consensus       132 tGsGD~TvR~WD~~TeT---p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Law  208 (480)
T KOG0271|consen  132 TGSGDTTVRLWDLDTET---PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAW  208 (480)
T ss_pred             ecCCCceEEeeccCCCC---cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEee
Confidence            56778999999988874   56778999999999999999999999999999999999988765 778999999999999


Q ss_pred             cC-----CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737          501 SP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  575 (732)
Q Consensus       501 sp-----dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~  575 (732)
                      .|     ..++||+++.||+|+|||+..+. ++..+.+|+.+|+|+.|-  |..++++++.|++|++|+...|.+.+.++
T Consensus       209 ep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lk  285 (480)
T KOG0271|consen  209 EPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELK  285 (480)
T ss_pred             cccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhc
Confidence            76     57799999999999999999765 688999999999999998  45699999999999999999999999888


Q ss_pred             ccCC-eeEEEEe-----------CCCC-------------------------EEEEEEcCCeEEEEECCCC-eEEEEEcC
Q 004737          576 CQSG-ATQMRFQ-----------PRLG-------------------------RILAAAIENYISILDVETQ-VCRLKLQG  617 (732)
Q Consensus       576 ~~~~-i~~v~~s-----------p~g~-------------------------~ll~~s~dg~I~IwDl~t~-~~i~~l~~  617 (732)
                      .+.. |+.++++           |.+.                         .+++++.|.++.+|+.... +++..+.+
T Consensus       286 GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  286 GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence            6654 6666554           3333                         4899999999999998654 58888999


Q ss_pred             CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          618 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       618 h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                      |..-|+.+.|+||++||++++ |..|++||-+++   +.+..+.+|-..|+.++|+.|.+.|++++.|.++++||+++.+
T Consensus       366 Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             hhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence            999999999999999999999 999999999999   8888999999999999999999999999999999999999999


Q ss_pred             EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          697 TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       697 ~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +. .+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus       443 l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  443 LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            88 7889999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-43  Score=360.11  Aligned_cols=289  Identities=24%  Similarity=0.381  Sum_probs=266.4

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      +.-..+.||.++|.|+.|+|+|+.||+|+.|.++++||+.+....+++++|..+|.||+|+|||+.||+|+.||+|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            34456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCC----CCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEE
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAA  595 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspd----g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~  595 (732)
                      ..++....+.+.+|...|++++|.|-    ...++++++.||.|+|||+..+.++..+..+ ..|+|++|--+ ++++++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg  264 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG  264 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence            99999888999999999999999873    2458889999999999999999999888754 56999999866 789999


Q ss_pred             EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe-----------CCCC-------------------------EEEEEe-
Q 004737          596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS-  638 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s-----------pdg~-------------------------~Lasgs-  638 (732)
                      +.|++|++|+...+.+...+++|...|+.++.+           |.++                         .|++|+ 
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            999999999999999999999999999999876           3333                         489999 


Q ss_pred             CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC
Q 004737          639 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG  717 (732)
Q Consensus       639 Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~  717 (732)
                      |.++.+|+....+  +++..+.+|..-|+.+.|+||++++++++.|..|++||..+|+.+ .+.+|-+.|..++|+.|.+
T Consensus       345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR  422 (480)
T ss_pred             CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence            7799999976543  678888999999999999999999999999999999999999999 8889999999999999999


Q ss_pred             EEEEEECCCeEEEeC
Q 004737          718 MVASASHDKCVKIWK  732 (732)
Q Consensus       718 ~LaSgs~DG~I~IWD  732 (732)
                      +|++|+.|.+++|||
T Consensus       423 LlVS~SkDsTLKvw~  437 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWD  437 (480)
T ss_pred             EEEEcCCCceEEEEE
Confidence            999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.5e-41  Score=349.31  Aligned_cols=283  Identities=27%  Similarity=0.437  Sum_probs=264.8

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEEEecC
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~  522 (732)
                      .--+-+.+|..|.|+.|++.||||+.+|.++||+..++..+.+|.+|...|.++.|+|.  +..+|||+.||+|++|+++
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            33467789999999999999999999999999999999999999999999999999996  6689999999999999999


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      +.. ++..+.+|...|..++|+|+|. +|++++.|.+-++||++++..+...++ ..+|.+++|.++|..+++|+.|..-
T Consensus       250 ~e~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  250 QET-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG  327 (459)
T ss_pred             CCc-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence            754 6889999999999999999975 556999999999999999887766664 4569999999999999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC-CCCEEE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLL  679 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~  679 (732)
                      +|||+++++++..+.+|..+|.+|+|+|+|..|++|+ |++++|||++..   .++..+..|.+-|+.+.|+| .|.+|+
T Consensus       328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~fL~  404 (459)
T KOG0272|consen  328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYFLV  404 (459)
T ss_pred             heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeEEE
Confidence            9999999999999999999999999999999999999 999999999987   66899999999999999998 789999


Q ss_pred             EEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          680 VIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.+||+|.
T Consensus       405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  405 TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999988 8889999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.2e-39  Score=318.07  Aligned_cols=291  Identities=18%  Similarity=0.327  Sum_probs=263.8

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  518 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I  518 (732)
                      .++..+++++|.++|.++.|++|.++|++++.||.+.|||.-+...++.++-...+|..++|+|.|+++|+|+-|+.+.|
T Consensus        44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi  123 (343)
T KOG0286|consen   44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI  123 (343)
T ss_pred             eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence            44566899999999999999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             EecCCCC-----ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeC-CCCE
Q 004737          519 WDTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQP-RLGR  591 (732)
Q Consensus       519 WDl~s~~-----~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp-~g~~  591 (732)
                      |++.+..     ...+.+.+|.+.+.|+.|.+| ..+ ++++.|.++.+||+++++.+..|..+ +.|.++.++| +++.
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~i-lT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHI-LTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCC-Cce-EecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            9998542     235679999999999999986 344 48999999999999999999999865 4599999999 8999


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~  670 (732)
                      +++|+.|+..++||++.+.++..|.+|+..|++|+|.|+|.-|++|+ |++.++||++.... ..+..-.....+|++++
T Consensus       202 FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~  280 (343)
T KOG0286|consen  202 FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVA  280 (343)
T ss_pred             EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEE
Confidence            99999999999999999999999999999999999999999999999 88999999998732 22233334457899999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          671 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       671 fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ||..|++|++|..|.++.+||.-.++.+ .+.+|++.|+++..+|||..|+||+.|..|+||.
T Consensus       281 FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  281 FSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999999999999999888877 8889999999999999999999999999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-36  Score=304.03  Aligned_cols=288  Identities=23%  Similarity=0.434  Sum_probs=264.2

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ++-.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+....+++|.+.|..+.|.+|++.|++++.|++|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            445678999999999999999999999999999999954 5666788899999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      +++++ ..+.+++|...|+.++-+.-|..++++++.|+++++||+++.++++++...-.++++.|...+..+++|+-|+.
T Consensus       119 ~~tG~-~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  119 AETGK-RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             cccce-eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            99987 58899999999999997777889999999999999999999999999987788999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc-eeEEEeecCC----CceEEEEEeCC
Q 004737          601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHPT  674 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~-~~i~~~~~~~----~~I~sl~fspd  674 (732)
                      |++||++.......+.+|...|+.+..+++|.++.+-+ |.++++||++..... .++..+.++.    .....|+|+|+
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            99999999999999999999999999999999999988 999999999876443 4466666553    33578899999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      +.++.+++.|..+++||......+ .+.+|.+.|+++.|+|...+|.+++.|.+|++
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            999999999999999999987666 88999999999999999999999999999976

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.9e-37  Score=320.29  Aligned_cols=258  Identities=26%  Similarity=0.368  Sum_probs=238.8

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      +...++|.+...   ..+.+|.+|+..|.++.|+|.  +..||+|+.||+|++|++++...+..+.+|...|..++|+|+
T Consensus       196 sG~~kvW~~~~~---~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPs  272 (459)
T KOG0272|consen  196 SGLVKVWSVPQC---NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPS  272 (459)
T ss_pred             CCceeEeecCCc---ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCC
Confidence            344555665555   467889999999999999996  668999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeE
Q 004737          504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQ  582 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~  582 (732)
                      |++|+|+|.|.+-++||++++. .+....||...|.+|+|++|| .++++|+.|..-+|||++++.++..+..+ ..|..
T Consensus       273 G~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~  350 (459)
T KOG0272|consen  273 GKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILS  350 (459)
T ss_pred             Cceeeecccccchhhcccccch-hhHhhcccccccceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceee
Confidence            9999999999999999999876 467788999999999999997 68889999999999999999999998855 56999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      ++|+|+|..+++|+.|++++|||++...++..+.+|.+-|+.|+|+| .|.+|++++ |++++||..++.   .++..+.
T Consensus       351 V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLa  427 (459)
T KOG0272|consen  351 VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLA  427 (459)
T ss_pred             EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhc
Confidence            99999999999999999999999999999999999999999999999 688999999 999999999988   8899999


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      +|.+.|.++.+++++.++++++.|.++++|.
T Consensus       428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999999999999999999999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.7e-34  Score=297.20  Aligned_cols=284  Identities=32%  Similarity=0.539  Sum_probs=254.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      ..+.+|.+.|++++|+|++++|++++.|+.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45779999999999999999999999999999999999888888889999999999999999999999999999999997


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .. ....+..|...|.++.|+++ ..++++++.++.|++||+++++....+. +...+.+++|+|++..+++++.++.|+
T Consensus        83 ~~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          83 GE-CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             cc-ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            64 46677889989999999998 4677778789999999999888888777 445699999999977777777799999


Q ss_pred             EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737          603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg  681 (732)
                      +||+++++.+..+..|...|.+++|+|+++.+++++ |+.|++||++..   ..+..+..+...+.++.|++++.+++++
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence            999999988888888999999999999998888888 999999999876   5666666778899999999998877777


Q ss_pred             EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            77999999999987776 6668889999999999999999999999999997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-35  Score=288.54  Aligned_cols=283  Identities=21%  Similarity=0.365  Sum_probs=244.4

Q ss_pred             EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcC-----CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737          442 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  515 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~  515 (732)
                      ...++++|++.|+.++..+. -..+++++.|.++.+|++.     .|..++.+++|...|..+..++||++.++++.|++
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            45678999999999999986 4578999999999999875     46778999999999999999999999999999999


Q ss_pred             EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc---CCeeEEEEeCC--CC
Q 004737          516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPR--LG  590 (732)
Q Consensus       516 I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~--g~  590 (732)
                      +++||+.+++ ..+.|.+|...|.+++|++|. .-+++|+.|.+|++|++. +.|..++...   +=|.|++|+|.  ..
T Consensus        87 lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   87 LRLWDLATGE-STRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             EEEEEecCCc-EEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            9999999985 688999999999999999995 556699999999999998 4555544433   34999999998  67


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737          591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  669 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl  669 (732)
                      .|+.++.|++|++||+++.+....+.+|.+.++.++++|||.+.++|+ ||.+.+||++.+   +++..+. +...|.++
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl  239 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL  239 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence            899999999999999999999999999999999999999999999999 999999999987   5555554 67889999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE----ccC-----CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~----~~h-----~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|+|+..+|+.+. +..|+|||++++.++ .+    .+.     .....+++|++||..|++|..|+.|++|.
T Consensus       240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            9999987655554 446999999998876 11    122     23456789999999999999999999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3e-34  Score=323.65  Aligned_cols=286  Identities=30%  Similarity=0.533  Sum_probs=256.9

Q ss_pred             EEEecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          443 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       443 v~~l~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +..+.+ |...|+|+.|+++|+++++++.|+.+++|+..+.+  ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            444544 48899999999999999999999999999998877  777788999999999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcC
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~d  598 (732)
                      |+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+. .|++++|++++..|++++.|
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            9966666789999999999999999998 888899999999999999999999998654 69999999999999999999


Q ss_pred             CeEEEEECCCCe--EEEEEcCCCCC--EEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEEE
Q 004737          599 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV  670 (732)
Q Consensus       599 g~I~IwDl~t~~--~i~~l~~h~~~--V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl~  670 (732)
                      +.|+|||+.++.  +...+..+...  +++++|+|++.||+++. |+.+++||+..+   .+...+..|...   +.+..
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence            999999999998  56777776665  99999999999999999 789999999987   666666666653   44556


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEE--CCCeEEEeC
Q 004737          671 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK  732 (732)
Q Consensus       671 fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs--~DG~I~IWD  732 (732)
                      +++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++  .|+.|++|+
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            6889999999999999999999987776 77889 89999999999999999998  799999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.8e-35  Score=285.09  Aligned_cols=268  Identities=19%  Similarity=0.387  Sum_probs=243.6

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-eeEEeecCCcceEEE
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL  541 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-~~~~l~~h~~~V~sl  541 (732)
                      -+||++++|.+|++|...+|.+..++....+.|..+.+.||++.||+++. -.||+||+.+... ++.++.+|...|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence            47999999999999999999999999877889999999999999999875 4799999998765 789999999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CCC
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN  620 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~~  620 (732)
                      .|..+| ..+++|++||+++|||++...+-+.+.+..+|+++..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus        90 gF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            999997 556699999999999999999999999999999999999999999999999999999998877666543 456


Q ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC---ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 004737          621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-  695 (732)
Q Consensus       621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~---~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~-  695 (732)
                      .|.++...|||.+++.+. .|..++|++-....   ..++..+..|...+..|.+||++++|++++.|.+++||++++. 
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            899999999999999988 88999999976432   4567778899999999999999999999999999999999988 


Q ss_pred             eEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          696 KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       696 ~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.. .+.+|...++.++||.|+.||+||+.|+.+++||
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence            222 7779999999999999999999999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-36  Score=305.46  Aligned_cols=288  Identities=26%  Similarity=0.476  Sum_probs=269.6

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      .+...+.+|...|+.+-|.|+-..+++++.|++|++||..+++....+++|.+.|.+|+|+..|++||+++.|-.+++||
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD  178 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCC
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg  599 (732)
                      ..+...+++...+|...|.+++|-|.| ..+++|+.|.+|+.|++.++.|+.++..+.. +..++...||..+++++.|.
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dq  257 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQ  257 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCc
Confidence            998666788899999999999999997 5555999999999999999999999987655 78889999999999999999


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCC---------------CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spd---------------g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                      +|++|-+.++.+...+..|+.+|.|++|.|.               +.++.+++ |++|++||+.++   .|+.++.+|.
T Consensus       258 tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~ghd  334 (406)
T KOG0295|consen  258 TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGHD  334 (406)
T ss_pred             eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEeccc
Confidence            9999999999999999999999999999772               24888888 999999999998   9999999999


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          664 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       664 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.|..++|+|.|+||+++..|+++++||+.++.++ ++..|...|+++.|+.+..+++||+-|..+++|.
T Consensus       335 nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  335 NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            99999999999999999999999999999999998 7789999999999999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.3e-34  Score=279.06  Aligned_cols=283  Identities=23%  Similarity=0.322  Sum_probs=247.2

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVR  499 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~  499 (732)
                      ..+.|.++|+|...+|..   .++++...+.|+.+.+.||+++||+++. -.|++||+.+++  .+.++++|+..|+.|.
T Consensus        15 sA~YDhTIRfWqa~tG~C---~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg   90 (311)
T KOG0315|consen   15 SAGYDHTIRFWQALTGIC---SRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG   90 (311)
T ss_pred             eccCcceeeeeehhcCeE---EEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence            456789999999999964   5667777788999999999999999885 689999999765  5789999999999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--c
Q 004737          500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q  577 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~  577 (732)
                      |..+|+++++|++||+++|||++...  ......|..+|+++..+|+...+| +|+.+|.|++||+.+..+...+..  .
T Consensus        91 F~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   91 FQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             EeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCC
Confidence            99999999999999999999999844  344455889999999999965555 999999999999998877665543  3


Q ss_pred             CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737          578 SGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      ..+.++.+.|+|..++++...|..++|++-+.      +++..++.|.+.+..+.++||++||++++ |.+++||+.++.
T Consensus       168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence            45899999999999999999999999998753      45667889999999999999999999999 999999999876


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEe
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS  713 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~s  713 (732)
                        .+....+.+|...+..|+||.|+.||++++.|+.+++||+..++.+ .+.+|.....|++..
T Consensus       248 --~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  248 --FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             --eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence              3555677888999999999999999999999999999999999988 677888888887764

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.9e-35  Score=295.74  Aligned_cols=287  Identities=21%  Similarity=0.391  Sum_probs=262.6

Q ss_pred             eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +...+++.+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.+|...|..+++++-..|+++++.|+.|+.|
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw  220 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW  220 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence            44567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      |++..+ .++.+.||-..|.|++.+|.- .+|++|+.|.++++||+++...+..+. +...|..+.+.|-...+++++.|
T Consensus       221 DLe~nk-vIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  221 DLEYNK-VIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             echhhh-hHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            999876 589999999999999999984 677799999999999999999999998 45679999999988999999999


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      ++|++||++.++....+..|+..|.+++.+|....+++++-+.|+-|++..+   ..+..+.+|..-|++++...|+ ++
T Consensus       299 ~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~-v~  374 (460)
T KOG0285|consen  299 STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG-VL  374 (460)
T ss_pred             ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-eE
Confidence            9999999999999999999999999999999999999999777999999887   6667788899999999998887 48


Q ss_pred             EEEEcCCeEEEEECCCCeEEEE----c-----cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          679 LVIGCYETLELWNMTENKTLTL----S-----AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~~~~~~----~-----~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++|+.+|.+.+||.+++.....    .     ..+..|.+.+|...+..|+||..|.+|++|+
T Consensus       375 ~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  375 VSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             EEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence            8899999999999999876511    1     2356799999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-33  Score=296.20  Aligned_cols=304  Identities=21%  Similarity=0.379  Sum_probs=260.0

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      .++++++++++-+++|....   .+.||...|++|+|-|... .+++|++|++|.+|+-..++...+++.|...|.|++|
T Consensus       122 GEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy  198 (603)
T KOG0318|consen  122 GEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY  198 (603)
T ss_pred             ecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence            57788899988888886544   4789999999999999776 4899999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ  577 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~  577 (732)
                      +|||.+|++++.||+|.|||-.++++ +..+.   +|.+.|.++.|+||+..++ +++.|.+++|||+.+.+++.++...
T Consensus       199 sPDG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~  276 (603)
T KOG0318|consen  199 SPDGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMG  276 (603)
T ss_pred             CCCCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecC
Confidence            99999999999999999999998875 55565   8999999999999986665 8899999999999999999999865


Q ss_pred             CCe----eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          578 SGA----TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       578 ~~i----~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      ..+    ..+.|.  ...|++.+.+|.|.+++.....+...+.+|...|+++..++++++|++|+ ||.|.-||..++..
T Consensus       277 ~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  277 STVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             CchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence            553    334454  57899999999999999999999999999999999999999999999999 99999999765421


Q ss_pred             cee--------EE-------------------------------------------------------------------
Q 004737          653 GEC--------IH-------------------------------------------------------------------  657 (732)
Q Consensus       653 ~~~--------i~-------------------------------------------------------------------  657 (732)
                      .+.        +.                                                                   
T Consensus       355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~  434 (603)
T KOG0318|consen  355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ  434 (603)
T ss_pred             cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence            100        00                                                                   


Q ss_pred             -----------------------------------------------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          658 -----------------------------------------------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       658 -----------------------------------------------~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                                                                     ....|..+|++++|+||+.+|+++...+.+.+|
T Consensus       435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y  514 (603)
T KOG0318|consen  435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY  514 (603)
T ss_pred             CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence                                                           011234567778888888888888888888888


Q ss_pred             ECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          691 NMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       691 Dl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |+.+.+..  .+.-|.+.|.+++|+|++.++|||+-|-+|.||+
T Consensus       515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  515 DVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence            88777665  4556999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.6e-33  Score=294.71  Aligned_cols=303  Identities=20%  Similarity=0.321  Sum_probs=254.7

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec---cCCCceEEEE
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR  499 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~V~~l~  499 (732)
                      .+.|..+.+++   |.+|+...+++.|..-|.|+.|+|||+++|+++.||+|.|||-.+++.+..+.   +|.+.|.+++
T Consensus       166 ~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfals  242 (603)
T KOG0318|consen  166 GSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALS  242 (603)
T ss_pred             ccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEE
Confidence            34455555554   88888889999999999999999999999999999999999999999999997   8999999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCCCCc------------------------------------------eeEEeecCCcc
Q 004737          500 FSPSLSRLATSSADRTVRVWDTENPDY------------------------------------------SLRTFTGHSTT  537 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s~~~------------------------------------------~~~~l~~h~~~  537 (732)
                      |+||+..|+|++.|.+++|||+.+.+.                                          +...+.+|...
T Consensus       243 WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~  322 (603)
T KOG0318|consen  243 WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS  322 (603)
T ss_pred             ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence            999999999999999999999985431                                          23345689999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-------------------------------EE------------
Q 004737          538 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-------------------------------VF------------  574 (732)
Q Consensus       538 V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-------------------------------~~------------  574 (732)
                      |+++..++++ ..|++|+.||.|.-||+.++..-+                               .+            
T Consensus       323 ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~  401 (603)
T KOG0318|consen  323 ITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV  401 (603)
T ss_pred             eeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence            9999999998 556699999999999986543110                               00            


Q ss_pred             ------------------------------e---------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEE
Q 004737          575 ------------------------------K---------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRL  613 (732)
Q Consensus       575 ------------------------------~---------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~  613 (732)
                                                    .         ..-...+++++|++..+++|+.|+.|+||.+....  ...
T Consensus       402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~  481 (603)
T KOG0318|consen  402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEA  481 (603)
T ss_pred             eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccccee
Confidence                                          0         00113567889999999999999999999998754  334


Q ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          614 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       614 ~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      .+..|.++|++|+++||+.||+++. .+.+.+||+.+...  ....+..|..+|.+++|+|+..++++|+-|-.|.||++
T Consensus       482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv  559 (603)
T KOG0318|consen  482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV  559 (603)
T ss_pred             eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence            5667999999999999999999999 99999999998743  44456668999999999999999999999999999999


Q ss_pred             CCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          693 TENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       693 ~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.....  ...+|...|+.+.|- +...|++.+.|..||+|.
T Consensus       560 ~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  560 KKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN  600 (603)
T ss_pred             cChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence            765433  445898889999996 566899999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-33  Score=279.87  Aligned_cols=267  Identities=15%  Similarity=0.263  Sum_probs=228.8

Q ss_pred             CCCCCceeeeeecCCC--ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEE
Q 004737          422 ADPRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR  499 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g--~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~  499 (732)
                      ...+|+.+-+|+....  ..-..++.+.||+..|..+..++||.+.++++.|+++++||+.+++....|.+|...|.+++
T Consensus        33 sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva  112 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVA  112 (315)
T ss_pred             EcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEE
Confidence            4566777777776443  22235788999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec-CCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737          500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQ  577 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~-h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~  577 (732)
                      |++|.+.|++|+.|++|++|++.... ....... +.+.|.|+.|+|+. +.+|++++.|++|++||+++.+....+..+
T Consensus       113 ~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh  191 (315)
T KOG0279|consen  113 FSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH  191 (315)
T ss_pred             ecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence            99999999999999999999998643 2333222 37899999999985 678889999999999999998888777654


Q ss_pred             -CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeE
Q 004737          578 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI  656 (732)
Q Consensus       578 -~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i  656 (732)
                       +.++.++++|||..+++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+.+..|+|||+.+.   .++
T Consensus       192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v  267 (315)
T KOG0279|consen  192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVV  267 (315)
T ss_pred             cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccch---hhh
Confidence             458999999999999999999999999999999988876 889999999999998888888888999999987   444


Q ss_pred             EEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          657 HELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       657 ~~~~~---------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      .++..         ......+++|+++|..|+++-.|+.|++|.+.
T Consensus       268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            43322         13345778999999999999999999999874

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3e-35  Score=303.99  Aligned_cols=277  Identities=21%  Similarity=0.438  Sum_probs=248.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      +..|..|.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-..  ++
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk  173 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK  173 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence            4569999999999999999999999999998777777788999999999999999999999999999999987543  44


Q ss_pred             Eeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          530 TFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVE  607 (732)
Q Consensus       530 ~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~  607 (732)
                      .+.. |...|.+++|+|++ ..|++|++||+|+|||....+..+.+..++ .+.+++|+|.-+.|++++.|+.|++||.+
T Consensus       174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            4444 45999999999974 566699999999999999888887777554 59999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 004737          608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE  685 (732)
Q Consensus       608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg  685 (732)
                      ++.|+.++.+|+..|..+.|.+++.+|++++ |..+++||+++.   +.+..+.+|...++++.|+|-. ..|.+++.|+
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence            9999999999999999999999999999999 999999999965   6777888999999999999966 5567788999


Q ss_pred             eEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          686 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       686 ~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|..|.+...+.+  .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            9999999855555  3348999999999999999999999999999993

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.9e-33  Score=295.04  Aligned_cols=282  Identities=25%  Similarity=0.453  Sum_probs=249.5

Q ss_pred             EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCC--Ce--EEEEec----------cCCCceEEEEEcCCCCeE
Q 004737          443 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FT--VKSTLE----------EHTQWITDVRFSPSLSRL  507 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t--~~--~~~~l~----------~h~~~V~~l~fspdg~~L  507 (732)
                      ++.++ |+.+|.+++|+|-.. .+++|+.|-+.++|++..  ..  ....|+          ..+..|++++|+.+|..|
T Consensus       172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L  250 (524)
T KOG0273|consen  172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL  250 (524)
T ss_pred             eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence            44555 999999999999655 899999999999999874  11  111111          124579999999999999


Q ss_pred             EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-eEEEEe
Q 004737          508 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ  586 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-~~v~~s  586 (732)
                      |+|+.||.++||+....  .+.++..|.++|.++.|+.+|.+++ +++.|+++.+||..++.....+..+... ..+.|.
T Consensus       251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            99999999999999853  3788999999999999999975554 9999999999999999999988877666 778998


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737          587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  665 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~  665 (732)
                      .+ ..|++.+.|+.|+|+-+....++.++.+|.++|.+|.|+|.+.+|++++ |++++||+....   .+++.+..|...
T Consensus       328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske  403 (524)
T KOG0273|consen  328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE  403 (524)
T ss_pred             cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence            76 7799999999999999999999999999999999999999999999999 899999998776   788889999999


Q ss_pred             eEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          666 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       666 I~sl~fspdg~---------~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |+.+.|+|++.         .+++++.|++|++||+..+.++ .+..|..+|.+++|+|+++|||+|+.||.|.||+
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            99999999763         5899999999999999999998 7779999999999999999999999999999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.8e-33  Score=292.86  Aligned_cols=275  Identities=20%  Similarity=0.330  Sum_probs=252.0

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      ..|++++|+.+|.+||+|+.||.++||+. ++..+.++..|.++|.++.|+.+|.||++++.|+++.+||..++. ....
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~  313 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQ  313 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-EEEe
Confidence            57999999999999999999999999995 567888999999999999999999999999999999999998876 4667


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQ  609 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~  609 (732)
                      +..|..+...+.|-.+  .-|++++.|+.|+|+.+....++.++. +++.|.++.|+|.+..|++++.|++++||.....
T Consensus       314 f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~  391 (524)
T KOG0273|consen  314 FEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS  391 (524)
T ss_pred             eeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence            7778888788999855  456789999999999999888888776 4577999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCCEEEEEEeCCC---------CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737          610 VCRLKLQGHKNQVHSVCWNTSG---------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       610 ~~i~~l~~h~~~V~sla~spdg---------~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~  679 (732)
                      .+...+.+|...|..+.|+|+|         ..+++++ |++|++||+..+   .+++.+..|..+|++++|+|++++++
T Consensus       392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylA  468 (524)
T KOG0273|consen  392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLA  468 (524)
T ss_pred             cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEE
Confidence            9999999999999999999965         3567776 999999999988   89999999999999999999999999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          680 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|+.|+.|.+|++++++++......+.|..++|+.+|.+|..+-.|+.|++-|
T Consensus       469 sGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  469 SGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLD  521 (524)
T ss_pred             ecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence            99999999999999999998878888899999999999999999999998754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=2.1e-34  Score=303.50  Aligned_cols=290  Identities=20%  Similarity=0.340  Sum_probs=252.7

Q ss_pred             EEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737          441 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  518 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I  518 (732)
                      ..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            35778999999999999999 899999999999999999986 8999999999999999999999999999999999999


Q ss_pred             EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEc
Q 004737          519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~  597 (732)
                      ||++++.+ +..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+..+ +.+..+.|.+++.++++++.
T Consensus       285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            99999885 43333 34568999999999889999999999999999999988887654 56999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC--CceEEEEEeC
Q 004737          598 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP  673 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~--~~I~sl~fsp  673 (732)
                      |+.++||+.+....+..+.. +.....||..+|++.++++-+ |+.|.+|.+...........+.+|.  +.-..|.|||
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            99999999998866554332 334567899999999999988 9999999976554333334445543  4456789999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737          674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD  732 (732)
                      ||.+|++|..||.+++||.++.+++ .+.+|+..+..+.|+|.. ..+|||+.||.|+|||
T Consensus       443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999999999988 888999999999999975 5899999999999997

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.7e-34  Score=293.00  Aligned_cols=290  Identities=20%  Similarity=0.331  Sum_probs=244.3

Q ss_pred             CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC---CeEEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737          437 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  513 (732)
Q Consensus       437 g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D  513 (732)
                      ..++.+.+++..|++.|.-+.||++|+|||+++.|.+..||.+..   .+..+++.+|..+|..+.|+||.++|++|+.|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            456678889999999999999999999999999999999998753   45678999999999999999999999999999


Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCeeEEEEeCCCCE
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR  591 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~~v~~sp~g~~  591 (732)
                      ..+++||+.++......-.+|...+.+++|.||+..+ ++|+.|+.|..||+. |......+.  ...+.++++.+||++
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE
Confidence            9999999999885433444556889999999998665 499999999999997 444444332  135889999999999


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc--eEE
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHS  668 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~--I~s  668 (732)
                      +++.+.|..|++|+.++...+..+. ...+|++++.+.+++++++.- +..|++||+...   ..+..+.+|...  +..
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr  444 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR  444 (519)
T ss_pred             EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence            9999999999999999876665444 457899999999999988877 889999999865   555555555432  333


Q ss_pred             EEEeC-CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737          669 CVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  732 (732)
Q Consensus       669 l~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD  732 (732)
                      -||-- +..++++|++|+.|+||+..+++++ .+.+|...|++++|+|.. .++|+|++||+|+||.
T Consensus       445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            44543 4588999999999999999999999 888999999999999976 4899999999999994

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.5e-32  Score=324.71  Aligned_cols=284  Identities=18%  Similarity=0.283  Sum_probs=242.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----e----EEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeE
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV  516 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I  516 (732)
                      +..|.+.|++++|+|+|++||+|+.|+.|+|||....    .    ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            5569999999999999999999999999999997542    1    122333 346799999987 47899999999999


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEe-CCCCEEEEE
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA  595 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~s-p~g~~ll~~  595 (732)
                      +|||+.++. .+..+.+|...|++++|+|.+..+|++|+.|+.|++||++++.++..+.....+.++.|. +++..++++
T Consensus       558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence            999999765 577888999999999999865678889999999999999999999888877789999995 468899999


Q ss_pred             EcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC---CceeEEEeecCCCceEEEE
Q 004737          596 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       596 s~dg~I~IwDl~t~~-~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~---~~~~i~~~~~~~~~I~sl~  670 (732)
                      +.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|++||++...   ...++..+.+|...+.+++
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            999999999998765 567788899999999997 677888888 9999999997532   2356778889999999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEE--------------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          671 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       671 fspdg~~L~sgs~dg~I~IwDl~t~~~~--------------~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |++++.+|++++.|+.|++|+......+              ....|...|.+++|++++.+|++|+.||.|+|||
T Consensus       716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            9999999999999999999998655322              1123556799999999999999999999999997

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=264.87  Aligned_cols=283  Identities=24%  Similarity=0.452  Sum_probs=240.1

Q ss_pred             eEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCC---CeEEEEe-ccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737          440 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR  514 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t---~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg  514 (732)
                      +..++.+.+|++.|..++|+|- |..||+|+.|+.|+||+...   ..+...+ .+|+..|..++|+|.|++|+++++|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            3467889999999999999998 88999999999999999884   4455555 47999999999999999999999999


Q ss_pred             eEEEEecCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEec-cCCeeEEEEeCCC
Q 004737          515 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQMRFQPRL  589 (732)
Q Consensus       515 ~I~IWDl~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~---~~i~~~~~-~~~i~~v~~sp~g  589 (732)
                      ++.||.-..+.+ ++.++.||..+|.|++|+++| .+||+|+.|+.|.||.+..+   +|...+.. ...|..+.|+|..
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            999998775543 467899999999999999996 67889999999999999743   45666653 3458999999999


Q ss_pred             CEEEEEEcCCeEEEEECC---CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737          590 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  665 (732)
Q Consensus       590 ~~ll~~s~dg~I~IwDl~---t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~  665 (732)
                      ..|++++.|++|++|+-.   ...++.++.+|...|.+++|++.|..|++++ |++|+||...+.       .-..|...
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~  235 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA  235 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence            999999999999999876   3478999999999999999999999999999 899999986532       12235678


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEECCCC------eEE--EEccCCCCeeEEEEeCC-CCEEEEEECCCeEEEeC
Q 004737          666 FHSCVFHPTFPSLLVIGCYETLELWNMTEN------KTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK  732 (732)
Q Consensus       666 I~sl~fspdg~~L~sgs~dg~I~IwDl~t~------~~~--~~~~h~~~V~sla~spd-g~~LaSgs~DG~I~IWD  732 (732)
                      ++.+.|. + ..|++++.|+.|++|.....      +.+  ....|...|+++.|.|. .++|++|++||.|++|.
T Consensus       236 ~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  236 LYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             eEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            8999998 4 45999999999999976543      111  33478999999999995 67999999999999994

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9.7e-32  Score=275.01  Aligned_cols=301  Identities=15%  Similarity=0.199  Sum_probs=262.0

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      ..+.|....+|+..+|.   ....+.+|++.|+|+.|+.||.|||||+.+|.|+||...++.....+...-..|.-+.|+
T Consensus        81 TGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH  157 (399)
T KOG0296|consen   81 TGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH  157 (399)
T ss_pred             ecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec
Confidence            45567778899999987   456689999999999999999999999999999999999999988887666779999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCC
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSG  579 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~  579 (732)
                      |.+.+|+.|+.||.|..|.+.+.. ..+.+.+|..++++=.|.|+|++++ ++..||+|++||+.++..+..+..  +..
T Consensus       158 p~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~  235 (399)
T KOG0296|consen  158 PRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLE  235 (399)
T ss_pred             ccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCc
Confidence            999999999999999999999864 5789999999999999999986655 899999999999999999888773  344


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------CCCCCEEEEEEe---CCCCEEEEEe-CCeEEEEEC
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSVCWN---TSGEYLASVS-DELVRVWSI  647 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--------~h~~~V~sla~s---pdg~~Lasgs-Dg~I~IWDl  647 (732)
                      ..++.++..+..++.+..++.+++....+++.+....        .+...+.||.+.   ..-.+.++|+ ||+|.|||+
T Consensus       236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~  315 (399)
T KOG0296|consen  236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL  315 (399)
T ss_pred             CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence            7888999998999999999999999999998887766        344445555554   4556777888 999999999


Q ss_pred             CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      ...    .++..-.|...|..+.|.+ ..+|++++.+|.|+.||.++|.++ ++.+|...|.+++++|+.++++|++.|+
T Consensus       316 a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  316 AAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             ccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence            875    3334445778899999999 788999999999999999999988 8889999999999999999999999999


Q ss_pred             eEEEeC
Q 004737          727 CVKIWK  732 (732)
Q Consensus       727 ~I~IWD  732 (732)
                      +.+||+
T Consensus       391 ~a~VF~  396 (399)
T KOG0296|consen  391 TALVFE  396 (399)
T ss_pred             eEEEEe
Confidence            999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2e-32  Score=303.69  Aligned_cols=273  Identities=23%  Similarity=0.392  Sum_probs=238.2

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-------------------------------eEEEEeccCCC
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEEHTQ  493 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-------------------------------~~~~~l~~h~~  493 (732)
                      ++..-...|+|+.|++|++.||.|-.|..|++|.+...                               ....++.+|.+
T Consensus       373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G  452 (707)
T KOG0263|consen  373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG  452 (707)
T ss_pred             EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence            34344456999999999999999999999999987621                               12244678999


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  573 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~  573 (732)
                      +|..+.|+|+.++|++++.|++||+|.+++.. .+..+.+|..+|+++.|+|.| +++++++.|++.++|.......++.
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhh
Confidence            99999999999999999999999999999866 578889999999999999996 7888999999999999999888888


Q ss_pred             Eecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC
Q 004737          574 FKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS  651 (732)
Q Consensus       574 ~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~  651 (732)
                      +.++ ..+.|+.|+|+..++++|+.|.+|++||+.++..++.|.+|.++|.+++|+|+|++|++|+ |+.|++||+.++ 
T Consensus       531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~-  609 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG-  609 (707)
T ss_pred             hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC-
Confidence            8755 5699999999999999999999999999999999999999999999999999999999999 999999999998 


Q ss_pred             CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------------------------E-EEccCCCC
Q 004737          652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT------------------------L-TLSAHDKL  706 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~------------------------~-~~~~h~~~  706 (732)
                        ..+..+..|.+.|.++.|+.+|..|++++.|.+|++||+..-..                        + .+..-..+
T Consensus       610 --~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tp  687 (707)
T KOG0263|consen  610 --SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTP  687 (707)
T ss_pred             --cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCce
Confidence              77888888999999999999999999999999999999853221                        1 33344457


Q ss_pred             eeEEEEeCCCCEEEEE
Q 004737          707 VSSLAASTVNGMVASA  722 (732)
Q Consensus       707 V~sla~spdg~~LaSg  722 (732)
                      |.++.|...+-.|++|
T Consensus       688 v~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  688 VVGLHFTRRNLLLAVG  703 (707)
T ss_pred             EEEEEEeccceeEEec
Confidence            8888887766445544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-31  Score=293.75  Aligned_cols=288  Identities=22%  Similarity=0.337  Sum_probs=251.3

Q ss_pred             eEEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737          440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  518 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D-g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I  518 (732)
                      +..++.+.-...+|..++|+..|.+||.|+.. |.+.||+..+...+....+|...+++++++|||.++|||+.||.|+|
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            34556666666789999999999999998765 89999999998888888999999999999999999999999999999


Q ss_pred             EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 004737          519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA  596 (732)
Q Consensus       519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s  596 (732)
                      ||..++- ++.+|..|+..|+.+.|+..++ .+++.+-||+|+.||+...++.+++..+.+  ..|++..|.|..+++|+
T Consensus       377 Wn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~  454 (893)
T KOG0291|consen  377 WNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA  454 (893)
T ss_pred             EeccCce-EEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence            9999865 6899999999999999999874 555889999999999999999999998776  56788888888888888


Q ss_pred             cCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          597 IEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       597 ~dg-~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      .|. .|.+|++.+|+.+-.+.+|+++|.+++|+|++..|++++ |.+|++||+-...   -..+.-.....+..++|+|+
T Consensus       455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~---~~vEtl~i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS---GTVETLEIRSDVLAVSFRPD  531 (893)
T ss_pred             cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC---ceeeeEeeccceeEEEEcCC
Confidence            875 799999999999999999999999999999999999999 9999999997652   22222335677999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE-E----------------Ec----cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL-T----------------LS----AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~-~----------------~~----~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |+.|++++-||.|.+||++.+..+ .                +.    .....++.+++++||.+|++|+....|+||+
T Consensus       532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence            999999999999999999776544 1                11    1235789999999999999999999999985

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.1e-31  Score=292.45  Aligned_cols=288  Identities=21%  Similarity=0.323  Sum_probs=259.5

Q ss_pred             EEEEEecCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          441 TEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafS-pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      ..+..+-|..+.|.+|+|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|.+|+||+.|.++++|
T Consensus       314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW  392 (775)
T KOG0319|consen  314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW  392 (775)
T ss_pred             EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence            4556678888999999885 57789999999999999998887766 889999999999966678899999999999999


Q ss_pred             ecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEE-------eccCCeeEEEEe
Q 004737          520 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ  586 (732)
Q Consensus       520 Dl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i---~~~-------~~~~~i~~v~~s  586 (732)
                      .++++.   .++....+|...|.+++++..+..+|++++.|++|++|++...+..   ..+       .+...|++++++
T Consensus       393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia  472 (775)
T KOG0319|consen  393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA  472 (775)
T ss_pred             EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence            885433   2345678999999999999999999999999999999999762211   111       255679999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737          587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  665 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~  665 (732)
                      |+...+++|+.|.+.+||+++......++.+|+..|.|+.|++....+++++ |.+|+||.+.+.   .|+.++.+|...
T Consensus       473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a  549 (775)
T KOG0319|consen  473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA  549 (775)
T ss_pred             CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence            9999999999999999999999999999999999999999999999999999 999999999988   899999999999


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          666 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       666 I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |..+.|-.+++.|++++.||-|++|+++++.++ ++..|++.|++++.++...+++||+.||.|.+|+
T Consensus       550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            999999999999999999999999999999998 8899999999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.7e-30  Score=259.09  Aligned_cols=260  Identities=24%  Similarity=0.372  Sum_probs=231.5

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC------eEEEEeccCCCceEE
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITD  497 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~  497 (732)
                      +-|..+-+||..+..   .++.++-....|..|+|+|.|+++|+|+-|+...||++.+.      ...+.+.+|++.+.|
T Consensus        74 SqDGklIvWDs~Ttn---K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylSc  150 (343)
T KOG0286|consen   74 SQDGKLIVWDSFTTN---KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSC  150 (343)
T ss_pred             ccCCeEEEEEccccc---ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEE
Confidence            345666778866653   46667788899999999999999999999999999999865      455778999999999


Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737          498 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ  577 (732)
Q Consensus       498 l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~  577 (732)
                      +.|-+| ..|+|++.|.++.+||++++. .+..|.+|.+.|.++++.|...+.+++|+.|+..++||++.+.++..|..+
T Consensus       151 C~f~dD-~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh  228 (343)
T KOG0286|consen  151 CRFLDD-NHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH  228 (343)
T ss_pred             EEEcCC-CceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence            999885 579999999999999999987 488999999999999999955677779999999999999999999999854


Q ss_pred             -CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737          578 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG  653 (732)
Q Consensus       578 -~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~  653 (732)
                       ..|..++|.|+|.-|++|+.|++.++||++....+..+..  ...+|++++|+..|++|++|. |..+.+||.-.+   
T Consensus       229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---  305 (343)
T KOG0286|consen  229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---  305 (343)
T ss_pred             ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---
Confidence             5699999999999999999999999999999887777763  345899999999999999988 889999999877   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      +.+..+.+|++.|.++..+|||.-+++++.|..|+||.
T Consensus       306 e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  306 ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            77888899999999999999999999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.4e-31  Score=297.11  Aligned_cols=243  Identities=25%  Similarity=0.431  Sum_probs=223.1

Q ss_pred             EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC------------------------------ceeEEeecCC
Q 004737          486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------------YSLRTFTGHS  535 (732)
Q Consensus       486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~------------------------------~~~~~l~~h~  535 (732)
                      .++......++|..|++|+++||.|..|..|++|.+...+                              ...+++.+|.
T Consensus       372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~  451 (707)
T KOG0263|consen  372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS  451 (707)
T ss_pred             EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence            3444455679999999999999999999999999887311                              1245688999


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737          536 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  614 (732)
Q Consensus       536 ~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~  614 (732)
                      ++|..+.|+|+. .+|++|+.|++||+|.+.+..++..++.+ .+|..+.|+|.|-+|++++.|++-++|......+.+.
T Consensus       452 GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  452 GPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             Cceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence            999999999995 56669999999999999999999888854 5689999999999999999999999999999999999


Q ss_pred             EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          615 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       615 l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      +.+|-+.|.|+.|+|+..|+++|+ |.+|++||+.++   ..++.+.+|..+|.+++|+|+|++|++|+.|+.|.+||+.
T Consensus       531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             hcccccccceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            999999999999999999999999 999999999998   7899999999999999999999999999999999999999


Q ss_pred             CCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          694 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       694 t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++.+ .+.+|++.|.++.|+.||.+||+|+.|..|++||
T Consensus       608 ~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  608 NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            99888 8889999999999999999999999999999997

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-29  Score=278.08  Aligned_cols=281  Identities=21%  Similarity=0.326  Sum_probs=253.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC-CeEEEEecCCCC
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPD  525 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~I~IWDl~s~~  525 (732)
                      ......|+|++|++..+.||+|-..|...+|.+....+++.+.-....|..++|+..|.+||.|+.. |.+-||++.+..
T Consensus       262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs  341 (893)
T KOG0291|consen  262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES  341 (893)
T ss_pred             cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence            3344789999999999999999999999999999999999998888899999999999999998765 899999999876


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL  604 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw  604 (732)
                      + +....+|...+++++++||| .++++|+.||.|+|||...+-|..+|. +...++.+.|+..++.+++.+.||+|+.|
T Consensus       342 Y-VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw  419 (893)
T KOG0291|consen  342 Y-VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW  419 (893)
T ss_pred             e-eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence            5 56678899999999999997 677799999999999999999999997 45679999999999999999999999999


Q ss_pred             ECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737          605 DVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       605 Dl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg  681 (732)
                      |+...+..+++... .....|++..|.|.++++|+ |. .|+||++.++   +.+..+.+|+++|.+++|+|++..|+++
T Consensus       420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~  496 (893)
T KOG0291|consen  420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASG  496 (893)
T ss_pred             eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEec
Confidence            99999999988753 33567889999999999999 66 8999999999   8888999999999999999999999999


Q ss_pred             EcCCeEEEEECCCCe-EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          682 GCYETLELWNMTENK-TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       682 s~dg~I~IwDl~t~~-~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.|.+|++||+-... .+....+...+.+++|+|+|+-|+++.-||.|.+||
T Consensus       497 SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d  548 (893)
T KOG0291|consen  497 SWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFD  548 (893)
T ss_pred             cccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence            999999999996653 334456778899999999999999999999999997

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.1e-31  Score=288.87  Aligned_cols=304  Identities=21%  Similarity=0.320  Sum_probs=246.2

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      ...+...+++|.+.+|.   .++.++. |+++|.-++|+|.+.+|++|+.|+.|+|||+..+.+.+.|++|.+.|..+.|
T Consensus        79 ~a~rs~llrv~~L~tgk---~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F  155 (775)
T KOG0319|consen   79 TASRSQLLRVWSLPTGK---LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLF  155 (775)
T ss_pred             EeeccceEEEEEcccch---HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEe
Confidence            35567788999999993   5666777 9999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC--eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737          501 SPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS  578 (732)
Q Consensus       501 spdg~--~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~  578 (732)
                      +|+-.  .|++|..|+.|++||+.+...++.....|.+.|++++|.+|+..++ +++.|..|.+||+.+.++.+++....
T Consensus       156 ~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~~~~~~l~~lp~ye  234 (775)
T KOG0319|consen  156 HPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDLVQYKKLKTLPLYE  234 (775)
T ss_pred             CCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEE-EeccCcEEEEeehhhhhhhheechhh
Confidence            99644  5899999999999999976666788899999999999999976665 88899999999986544332221110


Q ss_pred             CeeE----------------------------------------------------------------------------
Q 004737          579 GATQ----------------------------------------------------------------------------  582 (732)
Q Consensus       579 ~i~~----------------------------------------------------------------------------  582 (732)
                      .+.+                                                                            
T Consensus       235 ~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~  314 (775)
T KOG0319|consen  235 SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT  314 (775)
T ss_pred             heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence            0000                                                                            


Q ss_pred             --------------EEEe------------------------------------------CCCCEEEEEEcCCeEEEEEC
Q 004737          583 --------------MRFQ------------------------------------------PRLGRILAAAIENYISILDV  606 (732)
Q Consensus       583 --------------v~~s------------------------------------------p~g~~ll~~s~dg~I~IwDl  606 (732)
                                    ++|-                                          ..|..|++++.|..+++|.+
T Consensus       315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~  394 (775)
T KOG0319|consen  315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRL  394 (775)
T ss_pred             EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEe
Confidence                          0000                                          11113444445555555533


Q ss_pred             -----------------------------------------------CCCeE-----EE----EEcCCCCCEEEEEEeCC
Q 004737          607 -----------------------------------------------ETQVC-----RL----KLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       607 -----------------------------------------------~t~~~-----i~----~l~~h~~~V~sla~spd  630 (732)
                                                                     ...+.     +.    ....|...|+|++++|+
T Consensus       395 ~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n  474 (775)
T KOG0319|consen  395 NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN  474 (775)
T ss_pred             cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC
Confidence                                                           22000     00    11247788899999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCee
Q 004737          631 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS  708 (732)
Q Consensus       631 g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~  708 (732)
                      .++|++|+ |.+.+||++...   .....+.+|...|.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|.
T Consensus       475 dkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl  551 (775)
T KOG0319|consen  475 DKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL  551 (775)
T ss_pred             CceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence            99999999 899999999855   788899999999999999999999999999999999999999999 8889999999


Q ss_pred             EEEEeCCCCEEEEEECCCeEEEeC
Q 004737          709 SLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       709 sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+.|-.+++.|++|+.||.||||+
T Consensus       552 ra~F~~~~~qliS~~adGliKlWn  575 (775)
T KOG0319|consen  552 RASFIRNGKQLISAGADGLIKLWN  575 (775)
T ss_pred             eeeeeeCCcEEEeccCCCcEEEEe
Confidence            999999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.2e-30  Score=253.14  Aligned_cols=281  Identities=18%  Similarity=0.349  Sum_probs=242.7

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      .+...+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEEe-ccCCeeEEEEeCCCCEEEEEEc
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~--~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~  597 (732)
                      +.+++ ..+.+.+|.+.|+.+.|+.+ ..++++|+.|..+++||.+..  +++..+. ....|.++.+..  ..|++|+.
T Consensus        88 V~TGk-v~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~  163 (307)
T KOG0316|consen   88 VNTGK-VDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSV  163 (307)
T ss_pred             cccCe-eeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeecc
Confidence            99987 58999999999999999987 578889999999999999764  4555554 235677777754  67999999


Q ss_pred             CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce--EEEEEeCC
Q 004737          598 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPT  674 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I--~sl~fspd  674 (732)
                      ||+++.||++.+.......+  .+|+|++|++++...++++ |++|++.|-.++   +.+..+++|.+.-  ..|++...
T Consensus       164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs  238 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS  238 (307)
T ss_pred             CCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence            99999999999987776654  4899999999999999988 999999999998   6677777776543  45678888


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCC-eeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~-V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ..+++.|++||.|++||+.+...+ .+..|... |.+++++|.-..|+++... .+..|
T Consensus       239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW  296 (307)
T ss_pred             ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence            889999999999999999999888 55566665 8999999988777777544 35555

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=2.1e-30  Score=284.47  Aligned_cols=281  Identities=20%  Similarity=0.387  Sum_probs=255.8

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      ..+.||...|.+++||.|...+++|+ .+.|+||+..+.++++++...  .+.+..|.|.++++++|...|.+.|||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            34679999999999999988888776 579999999999999999644  899999999999999999999999999998


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Cee--------eeEEeccCCeeEEEEeCCCC
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG  590 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-----~~~--------i~~~~~~~~i~~v~~sp~g~  590 (732)
                      .. .+.+...|.+.|++++..||+..++ +++.|.+|++||..-     +..        .++++....+.|+.++|+++
T Consensus       444 ~~-l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  444 AS-LVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             hh-hhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence            66 3677789999999999999986665 999999999999742     111        14555678899999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737          591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  669 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl  669 (732)
                      +++++--|++++||-+++.+....+.+|.-+|.|+..+||++++++|+ |..|+||-+.-+   .|-+.+-.|...|.++
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV  598 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence            999999999999999999999999999999999999999999999999 999999999877   7888899999999999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|.|....+++++.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.++++++.|.+|++|.
T Consensus       599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            99999999999999999999999888877 8899999999999999999999999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=6.5e-32  Score=273.62  Aligned_cols=266  Identities=22%  Similarity=0.402  Sum_probs=232.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  527 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~  527 (732)
                      .....|+|+.+  |...+++|..|++|+|||..+..+...+.+|++.|.|+.|.  .+.|++|+.|.+|+|||+.+++ +
T Consensus       195 e~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge-~  269 (499)
T KOG0281|consen  195 ENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE-P  269 (499)
T ss_pred             ccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-h
Confidence            35567999998  45689999999999999999999999999999999999994  5699999999999999999987 6


Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i---~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      +.++.+|...|..+.|+   +.++++|+.|.+|.+||+.....+   +.+. +...|..+.|+.  +++++++.|.+|++
T Consensus       270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikv  344 (499)
T KOG0281|consen  270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKV  344 (499)
T ss_pred             hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEE
Confidence            89999999999999998   468889999999999999765422   2333 234577777765  59999999999999


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      |++.++++++++.+|...|-|+.+  .++++++|+ |.+|++||+..+   .|+..+.+|+.-|.++.|.  .+.+++|+
T Consensus       345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~krIVSGa  417 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKRIVSGA  417 (499)
T ss_pred             Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cceeeecc
Confidence            999999999999999999988875  688999999 999999999998   8999999999999999995  45699999


Q ss_pred             cCCeEEEEECCCCeE----------EEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          683 CYETLELWNMTENKT----------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       683 ~dg~I~IwDl~t~~~----------~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .||+|+|||+..+.-          ..+..|.+.|..+.|.  ...|++++.|.+|.|||
T Consensus       418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD  475 (499)
T ss_pred             ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence            999999999976532          1556799999999985  66799999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.7e-31  Score=268.68  Aligned_cols=262  Identities=25%  Similarity=0.455  Sum_probs=239.8

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEc
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fs  501 (732)
                      ...|.++++||..+|..   ...++||++.|.+++|+..|++||+++.|-.+.+||..+ .++++.+.+|...|.+++|-
T Consensus       126 as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~  202 (406)
T KOG0295|consen  126 ASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL  202 (406)
T ss_pred             ecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEE
Confidence            34577889999888864   678999999999999999999999999999999999987 67778888999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCe
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA  580 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i  580 (732)
                      |.|.+|++++.|.+|+.|++.++. ++.++.+|...|..+..+.|| .++++|+.|.+|++|-+.++.|...+.. +..+
T Consensus       203 P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v  280 (406)
T KOG0295|consen  203 PLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPV  280 (406)
T ss_pred             ecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence            999999999999999999999875 699999999999999999986 7889999999999999999988877764 4457


Q ss_pred             eEEEEeCC---------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEE
Q 004737          581 TQMRFQPR---------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV  644 (732)
Q Consensus       581 ~~v~~sp~---------------g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~I  644 (732)
                      .+++|.|.               +.++++++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++. |+++++
T Consensus       281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV  360 (406)
T ss_pred             EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence            88888763               13788899999999999999999999999999999999999999999999 889999


Q ss_pred             EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ||+.+.   .|.+.+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus       361 wdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  361 WDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999988   899999999999999999999999999999999999975

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=1.1e-31  Score=277.53  Aligned_cols=250  Identities=24%  Similarity=0.451  Sum_probs=218.4

Q ss_pred             CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCe
Q 004737          437 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRT  515 (732)
Q Consensus       437 g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~  515 (732)
                      |..|.....+.+|..+|+++.|+++|.++++|+.+|.|++|+..- ..+..+.. |...|++++|+|+...|++|+.||+
T Consensus       125 g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~  203 (464)
T KOG0284|consen  125 GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT  203 (464)
T ss_pred             CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCe
Confidence            445555667889999999999999999999999999999999754 34444544 4589999999999999999999999


Q ss_pred             EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEE
Q 004737          516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA  594 (732)
Q Consensus       516 I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~  594 (732)
                      |+|||....+ ..+.+.+|.-.|.+++|+|. .-++++++.|..|++||.+++.|+.++..+ ..|..+.|++++++|++
T Consensus       204 ikiWdf~~~k-ee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt  281 (464)
T KOG0284|consen  204 IKIWDFRMPK-EERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT  281 (464)
T ss_pred             EEEEeccCCc-hhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE
Confidence            9999999766 46778999999999999998 578889999999999999999999887654 55999999999999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEE-EeecCCCceEEEEE
Q 004737          595 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIH-ELSCTGNKFHSCVF  671 (732)
Q Consensus       595 ~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~-~~~~~~~~I~sl~f  671 (732)
                      ++.|..+++||+++.+.++.+++|+..|+++.|+|-. .+|++++ ||.|..|.+...   +.+. .-..|...|++++|
T Consensus       282 ~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~---~p~~~i~~AHd~~iwsl~~  358 (464)
T KOG0284|consen  282 GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE---EPLGEIPPAHDGEIWSLAY  358 (464)
T ss_pred             ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccc---ccccCCCcccccceeeeec
Confidence            9999999999999999999999999999999999954 4666666 999999999743   2332 33468899999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEEC
Q 004737          672 HPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       672 spdg~~L~sgs~dg~I~IwDl  692 (732)
                      +|-|..|++|+.|.++++|.-
T Consensus       359 hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  359 HPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cccceeEeecCCCcceeeecc
Confidence            999999999999999999965

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.1e-29  Score=278.73  Aligned_cols=303  Identities=20%  Similarity=0.257  Sum_probs=257.6

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      .-.|..+++|+...+   ....++.+|+..|+++.|...|..||+|+.|+.|.|||+-...-...+++|++.|+..-|..
T Consensus        83 GYaDGsVqif~~~s~---~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~  159 (888)
T KOG0306|consen   83 GYADGSVQIFSLESE---EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN  159 (888)
T ss_pred             EecCceEEeeccCCC---ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence            445788999998876   45678999999999999999999999999999999999988888888999999998888888


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCC---------------------------------------------------------
Q 004737          503 SLSRLATSSADRTVRVWDTENPD---------------------------------------------------------  525 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~---------------------------------------------------------  525 (732)
                      +.+++++++.|+.|++||+++..                                                         
T Consensus       160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            77888888888888888877100                                                         


Q ss_pred             --------------------------------------------------------------------------------
Q 004737          526 --------------------------------------------------------------------------------  525 (732)
Q Consensus       526 --------------------------------------------------------------------------------  525 (732)
                                                                                                      
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence                                                                                            


Q ss_pred             --------------ce------------------------------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737          526 --------------YS------------------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       526 --------------~~------------------------------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~  561 (732)
                                    ..                              ...+.+|...|.+++++.+ +.++++++ .+.|+
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~Sik  397 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-SILLASGA-GESIK  397 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-ceeeeecC-CCcEE
Confidence                          00                              0123457788888998876 35554554 77899


Q ss_pred             EEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC
Q 004737          562 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE  640 (732)
Q Consensus       562 iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg  640 (732)
                      +|+..+.+|++++.+. -+.+..|.|.+.++++|...|.+.+||+.+...+.++..|.+.|++++.+||++.+++++ |.
T Consensus       398 iWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk  476 (888)
T KOG0306|consen  398 IWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK  476 (888)
T ss_pred             EEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence            9999999999999875 788999999999999999999999999999999889999999999999999999999999 99


Q ss_pred             eEEEEECCCCCC-----ceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEE
Q 004737          641 LVRVWSIGSGSK-----GECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSL  710 (732)
Q Consensus       641 ~I~IWDl~t~~~-----~~~i~----~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sl  710 (732)
                      +|++||+.-...     .+.+.    ..-.....|.|+.+|||+++|+++--|.+|+||-+.+-+.. .+.+|.-+|.||
T Consensus       477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm  556 (888)
T KOG0306|consen  477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM  556 (888)
T ss_pred             EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEE
Confidence            999999853211     01110    11123577999999999999999999999999999999877 899999999999


Q ss_pred             EEeCCCCEEEEEECCCeEEEe
Q 004737          711 AASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       711 a~spdg~~LaSgs~DG~I~IW  731 (732)
                      .++||++.++||+.|.+|+||
T Consensus       557 DIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  557 DISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             eccCCcCeEEeccCCCceEEe
Confidence            999999999999999999999

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-30  Score=277.43  Aligned_cols=282  Identities=22%  Similarity=0.412  Sum_probs=256.4

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      +.+..|+..|.|+.|+|...+++++-.+|.|.|||.++...++.+....-+|.+..|-...+++++|+.|..|+||+..+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            34566899999999999999999999999999999999999999998999999999999999999999999999999999


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCC-eeEEEEeCC-CCEEEEEEcCCe
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSG-ATQMRFQPR-LGRILAAAIENY  600 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~-i~~v~~sp~-g~~ll~~s~dg~  600 (732)
                      .. .+..|..|.+.|.|++.+|....+| ++++|-.|++||.+. ..|..++..+.. |.+++|.|. .+.+++++-|++
T Consensus        87 ~e-kV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   87 GE-KVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ce-eeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            87 4899999999999999999965555 999999999999976 467788886665 899999995 567999999999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCEEEEEEeCCC--CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg--~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      |+||.+....+..++++|...|+|+++-+-|  .||++|+ |.+|+|||..+.   .|+.++.+|...|..++|+|.-+.
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi  241 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI  241 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence            9999999999999999999999999998754  6999999 779999999887   899999999999999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          678 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      +++|++||+++||+..+.+.. ++.-.-..|+|++-.+.++.++.|.+.|.|.|
T Consensus       242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            999999999999999988877 55566789999999999999999999888754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.6e-31  Score=265.97  Aligned_cols=280  Identities=23%  Similarity=0.362  Sum_probs=246.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec--------cCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +.+..+.|..|||||.||++|+.||.|.|||..+|+..+.++        -+..+|.|+.|+.|...||+|+.||.|+||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            445668999999999999999999999999999998765543        478899999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcC
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~d  598 (732)
                      .+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|.++++--+++|++++.++.+.. |+...|.++|.++++++.|
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            99999864444458999999999999987777 899999999999999999999986654 8899999999999999999


Q ss_pred             CeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEee---cCCCceEEEEE
Q 004737          599 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVF  671 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~---~~~~~I~sl~f  671 (732)
                      |+|++|+..+.+|+.+++.  ...+|+++-.-|.+ ..+++|. .++|+|.++..    ..++.+.   -.++.+.+++.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l  445 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL  445 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence            9999999999999988875  44578888877754 5677777 88999999865    4555544   34577889999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          672 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       672 spdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|.|.++++.+.|+.++.|.+.+|++. ++..|+..|..++-+|..+.|++-++||.+++|+
T Consensus       446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999999999988 7779999999999999999999999999999996

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=3.3e-29  Score=247.16  Aligned_cols=281  Identities=19%  Similarity=0.247  Sum_probs=239.7

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      .+.||..+|+-+.|+.+|.+|++|+.|.++.||-..+|+.+-++.+|.+.|+|+..+.+.++++||+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEe----CCCcEEEEECC-------CCeeeeEEe-ccCCeeEEEEeCCCCEE
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFK-CQSGATQMRFQPRLGRI  592 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs----~Dg~I~iWDl~-------t~~~i~~~~-~~~~i~~v~~sp~g~~l  592 (732)
                      +. +..++ ...+|..+.|+++|+.++++..    ..+.|.++|++       ..++...+. ....++.+.|.|.+..|
T Consensus        85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            84 54444 5678999999999877776553    34689999998       344444444 45679999999999999


Q ss_pred             EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737          593 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~  670 (732)
                      ++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++ |.+-++||+++.   .+++++. ...+|++.+
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aa  238 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAA  238 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEee-eccccccee
Confidence            99999999999999998 45555677999999999999999999999 999999999987   6777766 467899999


Q ss_pred             EeCCCCEEEEEEcCCe--EEEEECCCCe------------EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          671 FHPTFPSLLVIGCYET--LELWNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       671 fspdg~~L~sgs~dg~--I~IwDl~t~~------------~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ++|-..+++.++....  |.--+.+.++            .+ .+.+|-++|++++|+|+|+..++|++||.|+|.
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            9999888888876553  3222333332            22 667999999999999999999999999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.7e-28  Score=252.48  Aligned_cols=258  Identities=31%  Similarity=0.539  Sum_probs=229.5

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      +..+++|+..++.   ....+..|...|.++.|++++++|++++.|+.|++||+.+++....+..|...|.++.|++++.
T Consensus        30 ~g~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  106 (289)
T cd00200          30 DGTIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR  106 (289)
T ss_pred             CcEEEEEEeeCCC---cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCC
Confidence            5677788877664   3556778999999999999999999999999999999999888888989999999999999988


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMR  584 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~  584 (732)
                      ++++++.|+.|++||+.+.. ....+..|...|.+++|+|+ ..++++++.|+.|++||+++++.+..+..+. .+.++.
T Consensus       107 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  184 (289)
T cd00200         107 ILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA  184 (289)
T ss_pred             EEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEecCccccceEE
Confidence            89888889999999999655 46677789999999999998 4667677779999999999888887777554 799999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737          585 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                      |++++..+++++.++.|++||+++++.+..+..|...|.+++|++++.++++++ |+.|++||+.+.   ..+..+..+.
T Consensus       185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~  261 (289)
T cd00200         185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHT  261 (289)
T ss_pred             ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccC
Confidence            999999999999999999999999988888878999999999999999999998 999999999876   6666777888


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          664 NKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       664 ~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      ..+.+++|++++.++++++.|+.|++|+
T Consensus       262 ~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         262 NSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            8999999999999999999999999996

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.5e-29  Score=247.39  Aligned_cols=282  Identities=18%  Similarity=0.261  Sum_probs=249.6

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE--eccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEe
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  520 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWD  520 (732)
                      +.+++|...|.+++|+.+|..|++|+.|++++||+++..+....  .++|.+.|-.++|+| ....|++++.|++|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            45778999999999999999999999999999999987755543  468999999999988 567899999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      ++..++...+..  ...-.-+.|+|+|+++ +.++.|..|.+.|.++.+.....+....+..++|+.++..++.....|.
T Consensus        94 ~r~~k~~~~i~~--~~eni~i~wsp~g~~~-~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKCTARIET--KGENINITWSPDGEYI-AVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcEEEEeec--cCcceEEEEcCCCCEE-EEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            999875444322  3344568899997655 4788899999999999999888888788999999988788888888899


Q ss_pred             EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737          601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~  679 (732)
                      |.|......+++..++.|.....||.|+|+|+||++|+ |-.+.+||+...   .|++.+.-+.-+|..+.|+.+|++|+
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence            99999999999999999999999999999999999999 999999999876   78888888999999999999999999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC---------CeEEEe
Q 004737          680 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW  731 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D---------G~I~IW  731 (732)
                      ++++|..|-|=++++|..+.-..++++...++|+|...+||.+++|         |.||||
T Consensus       248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF  308 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF  308 (313)
T ss_pred             ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence            9999999999999999999888999999999999999999988765         567765

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=2.1e-30  Score=253.16  Aligned_cols=280  Identities=21%  Similarity=0.270  Sum_probs=248.1

Q ss_pred             EecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          445 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       445 ~l~~H~~~V~~lafSp---dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      +..+|+.+|..++|||   +|-+|++++.|+.-.+-+-++|.-+-+|.+|.+.|+...++.+....|+++.|-+-+|||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            4579999999999986   8889999999999999999999999999999999999999999889999999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEE-eccCCeeEEEEeCCCCEEEEEEcCC
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      -++.. +..+. |..-|..++|+.|.++++ +|+.+..+||||++..+. ...+ .+.+.|..+.|......|++++.|+
T Consensus        89 ~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   89 VTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            98874 55554 888999999999965555 999999999999976542 2333 3557799999999999999999999


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~  679 (732)
                      .|++||.++++.+.++. ...+|+++.++++|++|.++..+.|++||..+.   ..++.+. ....|.+..++|+...++
T Consensus       166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFV  240 (334)
T ss_pred             ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEE
Confidence            99999999999999987 678999999999999999988889999999876   4555444 356788999999999999


Q ss_pred             EEEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          680 VIGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|+.|..++.||..+++.+..  .+|.++|.|+.|+|+|...++|+.||+|+||-
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            999999999999999998833  69999999999999999999999999999993

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=3.6e-29  Score=256.20  Aligned_cols=285  Identities=19%  Similarity=0.244  Sum_probs=246.3

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      .+.+|..|++.|.+|+.+|+.+++|||+.|....||++.+++....+.+|++.|+++.|+.||.+||||.-+|.|+||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      .++.. ...+...-..|.-+.|+|.+ .+|++|+.||.|.+|.+.++...+.+.. ..++++-.|.|+|++++++..||+
T Consensus       136 stg~~-~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  136 STGGE-QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ccCce-EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            98774 44554556778999999975 6777999999999999998766666664 456889999999999999999999


Q ss_pred             EEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee--------cCCCc---eE
Q 004737          601 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTGNK---FH  667 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~--------~~~~~---I~  667 (732)
                      |++||..++.++..+.. ......++.++..+..++.|+ ++.+++-+..++   +.+....        .+...   |.
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence            99999999999988874 334677889988999999888 889998888777   4443333        22333   44


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          668 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+.|+..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence            44555566788999999999999999999988889999999999998 78999999999999997

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=3.3e-29  Score=282.68  Aligned_cols=265  Identities=28%  Similarity=0.444  Sum_probs=229.7

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEeccCCCceEEEEEc
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      ...+..+++|....+.. .....+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++++.+|...|++++|+
T Consensus       177 ~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~  255 (456)
T KOG0266|consen  177 ASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS  255 (456)
T ss_pred             ccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEec
Confidence            34466777777744442 355667899999999999999999999999999999999 5668999999999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEeccC-
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQS-  578 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~~~~-  578 (732)
                      |+++++++|+.|++|+|||+++++ +.+.+.+|.+.|++++|++++. ++++++.|+.|++||+.++.  +...+.... 
T Consensus       256 p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~  333 (456)
T KOG0266|consen  256 PDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGAEN  333 (456)
T ss_pred             CCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCCCC
Confidence            999999999999999999999855 6899999999999999999975 55577889999999999999  555555332 


Q ss_pred             --CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE---EEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          579 --GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV---HSVCWNTSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       579 --~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V---~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                        .+.++.|+|++.++++++.|+.+++||+..+.+...+.+|...+   .+..+++.+.++++++ |+.|++||+.++  
T Consensus       334 ~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~--  411 (456)
T KOG0266|consen  334 SAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG--  411 (456)
T ss_pred             CCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc--
Confidence              46999999999999999999999999999999999999988753   3445577899999999 999999999986  


Q ss_pred             ceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 004737          653 GECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT  693 (732)
Q Consensus       653 ~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~  693 (732)
                       ..+..+..| ...+..+.+++...++++.+  .|+.|++|...
T Consensus       412 -~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  412 -GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             -chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence             666777778 88899999999999999998  67789999754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=6.1e-29  Score=253.29  Aligned_cols=291  Identities=18%  Similarity=0.291  Sum_probs=248.5

Q ss_pred             CCcccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 004737          394 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  473 (732)
Q Consensus       394 ~~~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~  473 (732)
                      .+.+.+|..|+.+..+|.--+.|.    ..+.|+++++||+.+|.   ...++.||...|..+++|+...||++++.|+.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~----tgs~DrtikIwDlatg~---LkltltGhi~~vr~vavS~rHpYlFs~gedk~  216 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFA----TGSADRTIKIWDLATGQ---LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ  216 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEE----ecCCCceeEEEEcccCe---EEEeecchhheeeeeeecccCceEEEecCCCe
Confidence            345578888888888877644443    45668999999999995   45678999999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEE
Q 004737          474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  553 (732)
Q Consensus       474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaS  553 (732)
                      |+.||++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.+++|||+++.. .+..+.||..+|..+.+.|.+..++ +
T Consensus       217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvi-t  294 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVI-T  294 (460)
T ss_pred             eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceE-E
Confidence            9999999999999999999999999999999999999999999999999865 6899999999999999999866555 9


Q ss_pred             EeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCC
Q 004737          554 CDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE  632 (732)
Q Consensus       554 gs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~  632 (732)
                      |+.|++|++||++.++....+.++ ..+.+++.+|....|++++ ...|+-|++..+..+..+.+|...|++++...|+-
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v  373 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV  373 (460)
T ss_pred             ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-CccceeccCCccchhhccccccceeeeeeeccCce
Confidence            999999999999999988777654 5589999999865555554 45789999999999999999999999999988876


Q ss_pred             EEEEEeCCeEEEEECCCCCCceeEEEeec-----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          633 YLASVSDELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       633 ~LasgsDg~I~IWDl~t~~~~~~i~~~~~-----~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      +++.+.+|.+.+||.+++...........     .+..|++.+|...+..|+++..|.+|++|.-.+
T Consensus       374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            55545588999999999865444433322     246689999999999999999999999997543

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=3e-28  Score=241.01  Aligned_cols=264  Identities=23%  Similarity=0.381  Sum_probs=219.1

Q ss_pred             CCCCceeeeeecCCCceeEEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEE
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVR  499 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l-~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~  499 (732)
                      .+.|+.+|+|+...+..+.....+ .+|+..|++++|+|.|+|||+|+.|.++.||.-.  +++++.++++|...|.|++
T Consensus        33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Va  112 (312)
T KOG0645|consen   33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVA  112 (312)
T ss_pred             ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEE
Confidence            455788888888877667777666 4799999999999999999999999999999766  4578899999999999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEE
Q 004737          500 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVF  574 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~---t~~~i~~~  574 (732)
                      |+++|.+||+++.|+.|-||.+....  .+...+.+|...|..+.|+|. ..+|++++.|.+|++|+-.   ..+++..+
T Consensus       113 ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~dddW~c~~tl  191 (312)
T KOG0645|consen  113 WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDDWECVQTL  191 (312)
T ss_pred             EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCCeeEEEEe
Confidence            99999999999999999999998443  345688999999999999998 5788899999999999876   34577777


Q ss_pred             ecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          575 KCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       575 ~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      ..+ ..+.+++|++.|.++++++.|++++||-..+.-.    ..|...++.+.|.  ...|++++ |+.|++|.-.....
T Consensus       192 ~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d  265 (312)
T KOG0645|consen  192 DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPD  265 (312)
T ss_pred             cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCC
Confidence            754 4799999999999999999999999998663211    1277899999998  44677776 99999998764311


Q ss_pred             ---ce-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 004737          653 ---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       653 ---~~-~i~~~~~~~~~I~sl~fspd-g~~L~sgs~dg~I~IwDl~  693 (732)
                         .. .......|+..|+++.|.|. ...|++++.||.|++|.+.
T Consensus       266 ~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  266 EPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence               11 12234568889999999995 6779999999999999874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.2e-29  Score=276.15  Aligned_cols=282  Identities=21%  Similarity=0.370  Sum_probs=249.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      +...+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...+|++|+.|..|+||+..+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            44566779999999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISIL  604 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg~I~Iw  604 (732)
                       ++.++.||-+.|..+.|++.-..++ ++++|-+|+||+..+++|+..+.++.. |.|..|+|....+++++-|-+|+||
T Consensus        85 -clftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   85 -CLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             -ehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence             5889999999999999999865555 999999999999999999999997766 8999999998999999999999999


Q ss_pred             ECCCC-----------------------------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737          605 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  654 (732)
Q Consensus       605 Dl~t~-----------------------------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~  654 (732)
                      |+..-                             -....+++|...|+.++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W  241 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W  241 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence            97521                             12345779999999999999999999999 77999999976432 3


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .+.+..+|.+.|.++.|+|....+++.++|++|+|||+.....+ ++....+..+.++.+|..+++++|.+.| +.||
T Consensus       242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~VF  318 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIVF  318 (1202)
T ss_pred             eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEEE
Confidence            45667789999999999999999999999999999999998888 6666678899999999999887765555 5454

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-28  Score=264.87  Aligned_cols=257  Identities=21%  Similarity=0.284  Sum_probs=230.7

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      ...+.+|+..+.   ..++.+.-..-+|+++.|-...+++++|+.|..|+||+..+++.++.|+.|.+.|.||+.+|.-.
T Consensus        34 nG~V~IWnyetq---tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P  110 (794)
T KOG0276|consen   34 NGDVQIWNYETQ---TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP  110 (794)
T ss_pred             cCeeEEEecccc---eeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCC
Confidence            344566776655   35666777788999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  584 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~  584 (732)
                      +++|+|.|-+|++||.+..-.+..++.||...|++++|+|.+.+-+++++-|++|+||.+....+..+++. ..+|.|++
T Consensus       111 ~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd  190 (794)
T KOG0276|consen  111 YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD  190 (794)
T ss_pred             eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence            99999999999999999988888999999999999999999999999999999999999999998888885 46799999


Q ss_pred             EeCCC--CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737          585 FQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC  661 (732)
Q Consensus       585 ~sp~g--~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~  661 (732)
                      |-+.+  .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-.+|++|+ ||+++||+..+-   +...++..
T Consensus       191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~  267 (794)
T KOG0276|consen  191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNY  267 (794)
T ss_pred             eccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhc
Confidence            98864  4899999999999999999999999999999999999999999999999 999999998876   55556666


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYETLE  688 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg~I~  688 (732)
                      ...+++|++-.+.+..+++|..+|.|.
T Consensus       268 gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  268 GLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             CCceEEEEeecCCCCeEEEeccCCcEE
Confidence            678899999988888888887777554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=9.9e-30  Score=263.62  Aligned_cols=282  Identities=20%  Similarity=0.341  Sum_probs=246.0

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ...+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|+.+.|.++++++++++.|+.+++|+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            34577899999999999998999999999999999987665  6778888899999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      ++... ...++.+|.+.|+++.|.-.... +++|+.|.+|++||+....|.+++-..+.+..++..  ...++++..|+.
T Consensus       248 vd~~r-~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  248 VDSLR-LRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK  323 (459)
T ss_pred             ccchh-hhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence            99866 47899999999999999876444 779999999999999999999888766777777776  356788888999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC----CCceEEEEEeCCC
Q 004737          601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF  675 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~----~~~I~sl~fspdg  675 (732)
                      |++||.++..++.....+. .|+++..++++..|.+++ |+++.++|+++.   ...+.+...    ....+.++|||++
T Consensus       324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence            9999999999999988664 999999999999999989 999999999987   444444332    2448899999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEE-EEc-cCC-CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          676 PSLLVIGCYETLELWNMTENKTL-TLS-AHD-KLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~-~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|+++|+.||.|+||++.++++. .+. .+. ..|++++|+|.|..|++++.++.+.+|.
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999999988 333 233 3699999999999999999999999994

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=3.8e-30  Score=260.88  Aligned_cols=261  Identities=20%  Similarity=0.394  Sum_probs=224.8

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      +..+|.++++||..+.+   ....+.||++.|.|+.|.  .+.|++|+.|.+|+|||+.+++++.++-.|...|..+.|+
T Consensus       212 SGlrDnTikiWD~n~~~---c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~  286 (499)
T KOG0281|consen  212 SGLRDNTIKIWDKNSLE---CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS  286 (499)
T ss_pred             cccccCceEEeccccHH---HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe
Confidence            57789999999987764   456789999999999995  5699999999999999999999999999999999999997


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-C
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S  578 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~  578 (732)
                      .  .++++++.|.+|.|||+..+..  ..+.+.||...|+.+.|+   ..++++++.|.+|++|++.++++++++..+ .
T Consensus       287 n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkR  361 (499)
T KOG0281|consen  287 N--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR  361 (499)
T ss_pred             C--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccc
Confidence            4  5999999999999999987652  235788999999999998   358889999999999999999999998854 4


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc----
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG----  653 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~----  653 (732)
                      +|.|+.+  .++.+++|+.|.+|++||++.|.+++.+++|+.-|.||.|.  .+.|++|. ||+|+|||+..+...    
T Consensus       362 GIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~  437 (499)
T KOG0281|consen  362 GIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPA  437 (499)
T ss_pred             cceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccc
Confidence            5666655  45788899999999999999999999999999999999995  56688888 999999999876432    


Q ss_pred             --eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          654 --ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       654 --~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                        .|+..+..|.+.|..+.|..  ..+++++.|.+|.|||..++..-
T Consensus       438 ~~~Cl~~lv~hsgRVFrLQFD~--fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  438 STLCLRTLVEHSGRVFRLQFDE--FQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cchHHHhhhhccceeEEEeecc--eEEEeccCCCeEEEEEcCCCCcc
Confidence              25666777888999999954  45899999999999999877544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-27  Score=240.18  Aligned_cols=283  Identities=22%  Similarity=0.301  Sum_probs=237.4

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC--CCeEEE
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV  518 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~I~I  518 (732)
                      +..+.++.-.+.|+++.|+++|.+|++++.|.+++|||..+++.++++..++..|..++|......++.++.  |.+|+.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            344556667788999999999999999999999999999999999999988889999999887777777766  889999


Q ss_pred             EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737          519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      .++.++++ ++.+.||...|.+|+.+|.+ ..+++++.|++|++||++..+|...+.. .+-..++|+|.|-.++++...
T Consensus        85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEeecCce-EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCC
Confidence            99998774 99999999999999999997 5555999999999999998888877765 344568999998888888888


Q ss_pred             CeEEEEECCCC--eEEEEEc---CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEE
Q 004737          599 NYISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSC  669 (732)
Q Consensus       599 g~I~IwDl~t~--~~i~~l~---~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl  669 (732)
                      +.|++||++.-  .+..++.   +.....+.|.|+|||++|+.+. .+.+++.|.-++.   ....+..+...   -..+
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a  238 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSA  238 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeE
Confidence            89999999863  3333332   3466889999999999999888 7799999998884   45554444322   3688


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      +|+||++++++++.||+|.+|++++++.+ .+.+ +..++.++.|+|.-.++++++  ..+.+|
T Consensus       239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw  300 (311)
T KOG1446|consen  239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW  300 (311)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence            99999999999999999999999999988 5555 789999999999887777764  467676

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=4.6e-28  Score=242.71  Aligned_cols=291  Identities=20%  Similarity=0.308  Sum_probs=242.5

Q ss_pred             ccccCCcccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 004737          390 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  469 (732)
Q Consensus       390 ~~~~~~~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs  469 (732)
                      +..+...+.++...+.+..|...-.+|.    ..+.|+.+-+|++....  +.+-.+.+|+++|..+.|.+|++.|++++
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P~gs~~a----SgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s~i~S~g  109 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHPDGSCFA----SGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGSHILSCG  109 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECCCCCeEe----ecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCCEEEEec
Confidence            3344445566666777666666555554    56678888888865542  35567789999999999999999999999


Q ss_pred             CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737          470 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       470 ~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~  548 (732)
                      .|++|+.||+++|+.++.+++|...|..+.-+.-| .++.+++.|++++|||+++.. .++++. ....++++.|...+.
T Consensus       110 tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~  187 (338)
T KOG0265|consen  110 TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSD  187 (338)
T ss_pred             CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEeccccc
Confidence            99999999999999999999999999998844433 467788999999999999755 355543 456899999998876


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCC----CeEEEEEcCCC----
Q 004737          549 DLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHK----  619 (732)
Q Consensus       549 ~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t----~~~i~~l~~h~----  619 (732)
                      .++ +|+-|+.|++||++......++..+ ..|+.+..+++|.++++-+.|.++++||++-    .+++..+.+|.    
T Consensus       188 qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe  266 (338)
T KOG0265|consen  188 QVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE  266 (338)
T ss_pred             cee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence            666 8999999999999999999999864 5699999999999999999999999999985    35677777653    


Q ss_pred             CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      .....++|+|++.++.+++ |..+++||....   .++..+.+|.+.|+++.|+|...+|.+++.|++|++=++
T Consensus       267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             hhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence            3456789999999999999 999999999876   789999999999999999999999999999999987543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=1e-28  Score=247.55  Aligned_cols=287  Identities=25%  Similarity=0.386  Sum_probs=240.3

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------------------CeEEEEeccCCCceEEEEEcCC
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      +-..+..|+.++.+.+|++||.++|+|+.|..|+|.|++.                  .-.++++..|.+.|+++.|+|.
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            3456788999999999999999999999999999999871                  1356788899999999999999


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccC
Q 004737          504 LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQS  578 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~  578 (732)
                      ..+|++++.|++|++||+...... .........+|.+|.|+|.|+.++ .|....++++||+++.+|...-.    +.+
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence            999999999999999999864321 112222457899999999986655 77878899999999988876543    446


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CC-CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC  655 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~-~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~  655 (732)
                      .|+++.+++.++.+++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..+++|.+.++   .+
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~  339 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM  339 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence            799999999999999999999999999999999988764 54 4789999999999999988 999999999998   77


Q ss_pred             EEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737          656 IHELSCTGN-----KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC  727 (732)
Q Consensus       656 i~~~~~~~~-----~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~  727 (732)
                      +.++.+.+.     --+...|.....|++.-.+. +.+.-||.++...+  .-.+|.+.+..+.-+|.+.-++||+.|-.
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r  419 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR  419 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence            777766532     12445677777777766554 48999999998776  33489999999999999999999999999


Q ss_pred             EEEeC
Q 004737          728 VKIWK  732 (732)
Q Consensus       728 I~IWD  732 (732)
                      +++|.
T Consensus       420 aRFWy  424 (430)
T KOG0640|consen  420 ARFWY  424 (430)
T ss_pred             eeeee
Confidence            99993

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=9.7e-28  Score=246.70  Aligned_cols=278  Identities=21%  Similarity=0.328  Sum_probs=236.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC---CCeEEEEeCCCeEEEEecCCC
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      -|.+.|.++...  +++|++|++||.++|||. .|+....+.+|.++|.+++|.-.   ...|++++.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            488889888887  779999999999999996 57889999999999999988543   236999999999999999876


Q ss_pred             Ccee---EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-------------------------eeeeEEe-
Q 004737          525 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK-  575 (732)
Q Consensus       525 ~~~~---~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-------------------------~~i~~~~-  575 (732)
                      ....   ....||...|.++...+++ ..+++|+.|..|.||+..+.                         .++..+. 
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            5432   3345999999999999996 56669999999999993211                         1122222 


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737          576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  654 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~  654 (732)
                      +...|.++.|++ ...+++++.|.+|++||+.++.++.++. ....++|+..+|..++|++|+ |..|++||.+++....
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence            335688899988 6889999999999999999999988887 457899999999999999999 9999999999987777


Q ss_pred             eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe-EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~t~~-~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|...|.++.|. ++.+|++|+.|..|+|+
T Consensus       337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence            88899999999999999998755 6678889999999999877 44 888999999999996 57799999999999997


Q ss_pred             C
Q 004737          732 K  732 (732)
Q Consensus       732 D  732 (732)
                      +
T Consensus       416 ~  416 (423)
T KOG0313|consen  416 K  416 (423)
T ss_pred             c
Confidence            4

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.9e-28  Score=271.83  Aligned_cols=246  Identities=21%  Similarity=0.320  Sum_probs=205.1

Q ss_pred             EEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--------------------------------C------
Q 004737          442 EFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--------------------------------F------  482 (732)
Q Consensus       442 ~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--------------------------------~------  482 (732)
                      ..+.+. +|.+.|+|+.||+||+|||+||.|+.|+||.+..                                .      
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344566 8999999999999999999999999999997644                                0      


Q ss_pred             ----------------------eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737          483 ----------------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  540 (732)
Q Consensus       483 ----------------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s  540 (732)
                                            +++..+.+|.+.|.+|.|+.+ .+|++++.|++|++|++.... +++.|. |.+.|+|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeEE
Confidence                                  111224589999999999976 589999999999999999755 577776 9999999


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--C
Q 004737          541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H  618 (732)
Q Consensus       541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h  618 (732)
                      |+|+|.++++|++|+-||.|+||+|...+.+.-...+.-|++++|.|+|...++|+.+|.+++|+....+....+.-  |
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence            99999999999999999999999999999888888888899999999999999999999999999998766544321  1


Q ss_pred             ------CCCEEEEEEeCCC--CEEEEEeCCeEEEEECCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeEE
Q 004737          619 ------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETLE  688 (732)
Q Consensus       619 ------~~~V~sla~spdg--~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~--~~I~sl~fspdg~~L~sgs~dg~I~  688 (732)
                            ...|+.+.|.|..  ++|++..|..|+|||.++.   ..+..+++..  ..-....|+.||++|++++.|..||
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY  571 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY  571 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence                  2279999998754  3666666999999999776   4444444332  3346678999999999999999999


Q ss_pred             EEECC
Q 004737          689 LWNMT  693 (732)
Q Consensus       689 IwDl~  693 (732)
                      ||++.
T Consensus       572 iW~~~  576 (712)
T KOG0283|consen  572 IWKND  576 (712)
T ss_pred             EEeCC
Confidence            99974

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4e-28  Score=238.02  Aligned_cols=276  Identities=21%  Similarity=0.354  Sum_probs=229.9

Q ss_pred             EEEEEcC--CCCEEEEEE-------CCCcEEEEEcCCCeEEEEe--ccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEec
Q 004737          454 ESCHFSP--DGKLLATGG-------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDT  521 (732)
Q Consensus       454 ~~lafSp--dg~~Lasgs-------~Dg~I~VWd~~t~~~~~~l--~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl  521 (732)
                      +++.|||  ++ +||++.       ..|++.|.++...+-+..+  ..-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus        12 ysvqfSPf~~n-rLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVEN-RLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccc-hhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            5688999  44 443332       3689999998644444333  235678999999995 567889999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCC-CCEEEEEEcCC
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR-LGRILAAAIEN  599 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~-g~~ll~~s~dg  599 (732)
                      .....++..++.|..+|.+++|++..+..+++++.|++|++|+......+.++..+. .|....|+|. .+.+++++.|+
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~  170 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG  170 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence            888889999999999999999999888888899999999999999999999988654 4888999995 46677888999


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-C
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-P  676 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~  676 (732)
                      .+++||++.......+..|...|.|+.|+... ..|++++ |+.|++||+++-.  .++.++.+|+-.|..+.|||.. .
T Consensus       171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~  248 (311)
T KOG0277|consen  171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS  248 (311)
T ss_pred             eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence            99999999765555588899999999999854 5666777 9999999999865  5688889999999999999976 5


Q ss_pred             EEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCC-CCEEEEEECCCeEEEeC
Q 004737          677 SLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK  732 (732)
Q Consensus       677 ~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spd-g~~LaSgs~DG~I~IWD  732 (732)
                      .|++++.|-+++|||.......  +...|...|..+.|++- ..++|+++.|+.++||+
T Consensus       249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            6778888889999999865544  66688999999999874 56999999999999996

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.5e-26  Score=262.72  Aligned_cols=250  Identities=16%  Similarity=0.202  Sum_probs=204.7

Q ss_pred             EECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCc-------eeEEeecCCcceE
Q 004737          468 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM  539 (732)
Q Consensus       468 gs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~-------~~~~l~~h~~~V~  539 (732)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.+...       ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999999888888899999999999999996 78999999999999999976431       2346788999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 004737          540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK  619 (732)
Q Consensus       540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~  619 (732)
                      +++|+|++..++++++.|+.|++||+++++.+..+.+...+.+++|+++|..|++++.|+.|+|||+++++.+..+.+|.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            99999998888889999999999999999888777777789999999999999999999999999999999999999998


Q ss_pred             CCEEEE-----EEeCCCCEEEEEe-CC----eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          620 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       620 ~~V~sl-----a~spdg~~Lasgs-Dg----~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                      +.+.+.     .|++++.+|++++ |+    .|+|||++..........+..+.+.+......+++.++++|..|+.|++
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence            765433     3458888888877 54    7999999964322222333333444444555667888999999999999


Q ss_pred             EECCCCeEEEE--ccCCCCeeEEEEeCCCC
Q 004737          690 WNMTENKTLTL--SAHDKLVSSLAASTVNG  717 (732)
Q Consensus       690 wDl~t~~~~~~--~~h~~~V~sla~spdg~  717 (732)
                      |++..+....+  ..+..++.+++|.|+..
T Consensus       290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEccCCcEEeecccccCCCccceEEccccc
Confidence            99988765432  34667889999999753

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=5.4e-28  Score=256.04  Aligned_cols=288  Identities=17%  Similarity=0.261  Sum_probs=233.6

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE----EEEe-ccCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTV  516 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~I  516 (732)
                      ....+.+|+..|.++++.|.|-.|++|+.|.+|++||......    .+.+ ......|.++.|++.+..|++.+....+
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            3456889999999999999999999999999999999875322    2222 2334569999999999999999999999


Q ss_pred             EEEecCCCCce-----------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEecc------C
Q 004737          517 RVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ------S  578 (732)
Q Consensus       517 ~IWDl~s~~~~-----------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~------~  578 (732)
                      +|+|-+.....           ....+||...++|.+|+|+....+++|+.||++++||++..+ ...+++..      -
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            99997743311           123568999999999999999999999999999999997643 34444421      2


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE---EEEEcCCCC--CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h~~--~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      .++.++|++++..|++|+.||.|.+||......   ...-..|..  .|+||.|++||++|++-+ |+++++||++..+ 
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-  397 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-  397 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-
Confidence            378999999999999999999999999865422   233345776  899999999999999988 9999999999876 


Q ss_pred             ceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          653 GECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       653 ~~~i~~~~~--~~~~I~sl~fspdg~~L~sgs~------dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                       +++....+  ...+-+.|+|||+.+.|++|..      .+.+++||..+...+ .+.-....|..+.|+|.-+.|+.++
T Consensus       398 -kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs  476 (641)
T KOG0772|consen  398 -KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS  476 (641)
T ss_pred             -cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence             44444433  3455688999999999998864      458999999998877 6666688899999999999999999


Q ss_pred             CCCeEEEe
Q 004737          724 HDKCVKIW  731 (732)
Q Consensus       724 ~DG~I~IW  731 (732)
                      .||.++||
T Consensus       477 gdG~~~vy  484 (641)
T KOG0772|consen  477 GDGTAHVY  484 (641)
T ss_pred             CCCceEEE
Confidence            99999986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=3.7e-27  Score=266.81  Aligned_cols=270  Identities=24%  Similarity=0.420  Sum_probs=241.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  526 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~  526 (732)
                      .|...|.|..|.  ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++. 
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-  282 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-  282 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence            467788999998  55899999999999999999999888 99999999999998878899999999999999998877 


Q ss_pred             eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD  605 (732)
Q Consensus       527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD  605 (732)
                      +...+.+|.+.|.++...   ..++++|+.|.+|++|++.++.++..+. +...|.++.+.  +..+++|+.|+.|.+||
T Consensus       283 C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             EEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence            588999999999999987   4577789999999999999999999999 77789999988  68999999999999999


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      +.+++++..+.+|...|+++.+... .++++|+ |++|++||+++..  +|+..+..|..-+..+.+  .+++|++++.|
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD  432 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD  432 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence            9999999999999999999988765 7888888 9999999998864  688889888888855544  56789999999


Q ss_pred             CeEEEEECCCCeEE-EEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          685 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       685 g~I~IwDl~t~~~~-~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.|++||.++++++ .+.+ |...|+++++.  ...+++++.||.+++||
T Consensus       433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99999999999988 5555 66889988876  46788999999999997

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=3.2e-26  Score=275.96  Aligned_cols=266  Identities=15%  Similarity=0.207  Sum_probs=212.8

Q ss_pred             CCCCceeeeeecCCC----cee-EEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceE
Q 004737          423 DPRDRVGRSAEVGKG----FTF-TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT  496 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g----~~~-~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~  496 (732)
                      .+.|..+++|+....    ... ..+..+. +...|.+++|++ ++.+||+++.|++|+|||+.+++.+..+.+|.+.|+
T Consensus       501 gg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~  579 (793)
T PLN00181        501 AGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW  579 (793)
T ss_pred             EeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE
Confidence            345666777775431    110 1122233 346799999987 578999999999999999999999999999999999


Q ss_pred             EEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEE
Q 004737          497 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF  574 (732)
Q Consensus       497 ~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~  574 (732)
                      +++|+| ++.+|++|+.|++|++||+.++. .+..+..+ ..|.++.|++....++++|+.|+.|++||+++.. .+..+
T Consensus       580 ~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~  657 (793)
T PLN00181        580 SIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM  657 (793)
T ss_pred             EEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence            999997 78999999999999999998765 35556544 6799999976656788899999999999998765 34444


Q ss_pred             e-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Q 004737          575 K-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS  646 (732)
Q Consensus       575 ~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWD  646 (732)
                      . +...|.++.|. ++..+++++.|+.|++||++.      ..++..+.+|...+.+++|++++.+|++|+ |+.|++|+
T Consensus       658 ~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~  736 (793)
T PLN00181        658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH  736 (793)
T ss_pred             cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence            4 44578999997 678999999999999999974      356788999999999999999999999999 99999999


Q ss_pred             CCCCCCcee--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          647 IGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       647 l~t~~~~~~--------i--~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      .........        +  .....+...|.+++|++++..|++++.+|.|+||++
T Consensus       737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            865421100        0  011234566999999999999999999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=1.3e-28  Score=260.00  Aligned_cols=247  Identities=18%  Similarity=0.305  Sum_probs=219.7

Q ss_pred             eEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737          483 TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~  561 (732)
                      +.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.....++++|.+|..+|..++|+.+|..+| +++.|+.|+
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~lK  283 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFLK  283 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceeee
Confidence            55678889999999999999 8899999999999999999987778999999999999999999987777 889999999


Q ss_pred             EEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C
Q 004737          562 YWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D  639 (732)
Q Consensus       562 iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D  639 (732)
                      +||+++|+++..+.....+.|+.|.|++ +.+++|+.|+.|+.||+++++.+..+..|-+.|..|.|-++|+.+++.+ |
T Consensus       284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            9999999999999999999999999998 7889999999999999999999999988999999999999999999999 8


Q ss_pred             CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEccCC--CCeeEEEEe
Q 004737          640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAAS  713 (732)
Q Consensus       640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~----~~~~h~--~~V~sla~s  713 (732)
                      +.++||+.+.+...+.+..  .+.....+|..+|.++++++-+.|..|.+|.+...-.+    .+.+|.  +.-..+.||
T Consensus       364 ks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS  441 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS  441 (503)
T ss_pred             ccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence            8999999988743333332  23445678999999999999999999999987654333    566774  566788999


Q ss_pred             CCCCEEEEEECCCeEEEeC
Q 004737          714 TVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       714 pdg~~LaSgs~DG~I~IWD  732 (732)
                      |||++|++|+.||.|.+||
T Consensus       442 pDG~~l~SGdsdG~v~~wd  460 (503)
T KOG0282|consen  442 PDGRTLCSGDSDGKVNFWD  460 (503)
T ss_pred             CCCCeEEeecCCccEEEee
Confidence            9999999999999999997

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-27  Score=229.75  Aligned_cols=258  Identities=23%  Similarity=0.310  Sum_probs=226.9

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      .-+.|+++|+|+..+|.   .++++.+|...|..++.+.|...|++|+.|..|.+||+++|+..+.+.+|.+.|+.++|+
T Consensus        34 tcGsdrtvrLWNp~rg~---liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN  110 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLRGA---LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN  110 (307)
T ss_pred             EcCCCceEEeecccccc---eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence            45678999999999885   567899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe
Q 004737          502 PSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA  580 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i  580 (732)
                      .+...+++|+.|.++++||.++.. .++..+....+.|.++...   +..|++|+.||+++.||++.|.....+- ..+|
T Consensus       111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~-g~pi  186 (307)
T KOG0316|consen  111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYF-GHPI  186 (307)
T ss_pred             CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhc-CCcc
Confidence            999999999999999999998654 3567788888999999998   5677799999999999999988765543 3789


Q ss_pred             eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEE--EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~--sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                      ++++|+++++..++++.|+.|++.|-++++.+..+++|...-.  ..+++.....+++|+ ||.|++||+...   ..+.
T Consensus       187 t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~s  263 (307)
T KOG0316|consen  187 TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQIS  263 (307)
T ss_pred             eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeee
Confidence            9999999999999999999999999999999999999977543  456777788899999 999999999887   6777


Q ss_pred             EeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          658 ELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       658 ~~~~~~~~-I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      .+..+... +..+.++|.-..++++...+ +.+|
T Consensus       264 k~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~  296 (307)
T KOG0316|consen  264 KLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFW  296 (307)
T ss_pred             eeccCCceeEEeeecccCccceeEecCCc-eece
Confidence            77777777 89999999988777776554 4455

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=4.2e-26  Score=257.56  Aligned_cols=265  Identities=15%  Similarity=0.228  Sum_probs=211.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-------------EEeccCCCceEEEEEcC-CCCeEEEEeCCCe
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRT  515 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~  515 (732)
                      -..|....+++|+..+++++.+..+..|+...+..+             ..+.+|.+.|++++|+| ++.+|++|+.|++
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt   99 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT   99 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence            344666677777666777777777777775443322             23678999999999999 8899999999999


Q ss_pred             EEEEecCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCC
Q 004737          516 VRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR  588 (732)
Q Consensus       516 I~IWDl~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~  588 (732)
                      |+|||+.+..      ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+.. ...|.+++|+|+
T Consensus       100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd  179 (493)
T PTZ00421        100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD  179 (493)
T ss_pred             EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence            9999997643      246678899999999999998778899999999999999999998888764 456999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEeCCCCEEEEEe-----CCeEEEEECCCCCCceeEEEeec-
Q 004737          589 LGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-  661 (732)
Q Consensus       589 g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-V~sla~spdg~~Lasgs-----Dg~I~IWDl~t~~~~~~i~~~~~-  661 (732)
                      +..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..|++++     |+.|++||+++...  .+..... 
T Consensus       180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d  257 (493)
T PTZ00421        180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLD  257 (493)
T ss_pred             CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccC
Confidence            999999999999999999999999899888765 45678898877777643     67999999987542  3333322 


Q ss_pred             CCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCC
Q 004737          662 TGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN  716 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg  716 (732)
                      ....+....|++++.+|++++ .|+.|++||+.+++.+..  ..+..++..++|.|..
T Consensus       258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            234566678999999999888 499999999999887732  2455678888888854

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.2e-28  Score=249.89  Aligned_cols=279  Identities=17%  Similarity=0.317  Sum_probs=235.5

Q ss_pred             EEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          443 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      +..+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++..  ..+++++.|++|+.|.+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            56679999999999999977 6899999999999999999999999999999999999976  67899999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEE-EEcCC
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA-AAIEN  599 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~-~s~dg  599 (732)
                      +.+  +++++.+ ...+..|+-+.. ...+++|+.  .|.|||..-..++..+... ..+.++.|+|-...|++ ++.|+
T Consensus       137 ~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDr  210 (433)
T KOG0268|consen  137 DGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDR  210 (433)
T ss_pred             cCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCC
Confidence            863  4666664 445777776654 467778864  5999999888888888753 55899999997666554 55899


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      .|.+||++...++..+. -.-.-+.|||+|....+++++ |..++.||++...  ..+.....|.+.|..+.|+|.|.-+
T Consensus       211 sIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  211 SIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             ceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchh
Confidence            99999999998876654 344567899999777777777 8899999998765  5677788899999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          679 LVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~~~~~~~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++|+.|.+|+||.+..+....+.  .--..|.|+.||.|.+||++|++|+.|++|+
T Consensus       288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            99999999999999888766322  2345799999999999999999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.2e-27  Score=248.28  Aligned_cols=277  Identities=19%  Similarity=0.274  Sum_probs=240.9

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce
Q 004737          449 STSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  527 (732)
Q Consensus       449 H~~~V~~lafSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~  527 (732)
                      -.+.|.+++|+|...+ +|+.+ .-.|.||+..+.....++......|++++|..||++||+|...|.|+|||+.+ ...
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~i  102 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVI  102 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHH
Confidence            3457999999996654 44433 36899999999888888888889999999999999999999999999999654 456


Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC-EEEEEEcCCeEEEEE
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILD  605 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~-~ll~~s~dg~I~IwD  605 (732)
                      ++.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+. +...|.|.+|+|... .+++|+.||.|++||
T Consensus       103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D  182 (487)
T KOG0310|consen  103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD  182 (487)
T ss_pred             HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence            889999999999999999999999999999999999999888654444 445699999999766 577889999999999


Q ss_pred             CCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          606 VETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       606 l~t~-~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      ++.. ..+.++. |..+|..+.+-|.|..|++++...|+|||+.++.  +.+.....|...|+|+++..++..|++++-|
T Consensus       183 tR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD  259 (487)
T KOG0310|consen  183 TRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLD  259 (487)
T ss_pred             eccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeecccc
Confidence            9987 6666665 9999999999999999999999999999999764  4455555588999999999999999999999


Q ss_pred             CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          685 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       685 g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      +.|++||+.+.+.+.--.-.++|.+|+.+|++..++.|-.||.+.+
T Consensus       260 ~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  260 RHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             cceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            9999999988888866678899999999999999999999998754

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=9.7e-27  Score=266.34  Aligned_cols=281  Identities=20%  Similarity=0.293  Sum_probs=237.6

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEEcCC------------CeEEEEeccCCCceEEEEEcCCCCeEEEEeC
Q 004737          447 PASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA  512 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs--~Dg~I~VWd~~t------------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~  512 (732)
                      ..+...|.+++.+|||..+|+|+  .|+.++||+.+.            .+.+.....|.+.|+|+.|++||.+||+|+.
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            34456699999999999999999  999999998652            2334566789999999999999999999999


Q ss_pred             CCeEEEEecCC----CC-------------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737          513 DRTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  575 (732)
Q Consensus       513 Dg~I~IWDl~s----~~-------------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~  575 (732)
                      |+.|.||+...    ..             ..+..+.+|...|..++|+|++ .++++++.|++|.+||..+.+++.+++
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeee
Confidence            99999999872    11             2456789999999999999985 788899999999999999999999888


Q ss_pred             c-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEEEEeCCCCEEEEEe--CC---eEE
Q 004737          576 C-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVR  643 (732)
Q Consensus       576 ~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------~~V~sla~spdg~~Lasgs--Dg---~I~  643 (732)
                      . .+.|..+.|+|-|++|++-+.|++|+||++.+......+.++.      ..+..+.|+|||.||++..  .+   ++.
T Consensus       169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            5 4569999999999999999999999999988876666665543      3578899999999999976  33   788


Q ss_pred             EEECCCCCCceeEEEeecCCCceEEEEEeCC-------------C----CEEEEEEcCCeEEEEECCCCeEEEE--ccCC
Q 004737          644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPT-------------F----PSLLVIGCYETLELWNMTENKTLTL--SAHD  704 (732)
Q Consensus       644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd-------------g----~~L~sgs~dg~I~IwDl~t~~~~~~--~~h~  704 (732)
                      |.+-.+.   ++-..+.+|..++.++.|+|.             .    ..+++|+.|++|.||.....+++..  .-..
T Consensus       249 IieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~  325 (942)
T KOG0973|consen  249 IIERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN  325 (942)
T ss_pred             EEecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence            8887665   667788899999999999873             1    1578889999999999988877733  2346


Q ss_pred             CCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          705 KLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       705 ~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ..|.+++|+|||..|+.|+.||+|.+.
T Consensus       326 ~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  326 KSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            789999999999999999999999875

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=4.8e-28  Score=236.68  Aligned_cols=250  Identities=19%  Similarity=0.239  Sum_probs=225.9

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      =+.++.+|++.|+.+++..+....|+++.|-+.+|||.-+|..++.|. |..-|..++|+.|.++|++|+.++.++|||+
T Consensus        51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl  129 (334)
T KOG0278|consen   51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL  129 (334)
T ss_pred             cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence            367899999999999999999999999999999999999999999985 8889999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      ...+.+...+.+|.+.|..+.|+..+..+| +++.|++||+||.+++..+..+....+++++.++++|. +++....+.|
T Consensus       130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV  207 (334)
T KOG0278|consen  130 NRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSV  207 (334)
T ss_pred             cCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCcee
Confidence            999888899999999999999998766666 66889999999999999999999999999999999955 5666777899


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE-eecCCCceEEEEEeCCCCEEE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~-~~~~~~~I~sl~fspdg~~L~  679 (732)
                      .+||..+...+..++ -...|.+...+|+..++++|+ |..++.||+.++   ..+.. .++|.++|.|+.|+|+|...+
T Consensus       208 ~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~yA  283 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELYA  283 (334)
T ss_pred             EEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCceee
Confidence            999999988887776 567799999999998888888 899999999998   44444 478999999999999999999


Q ss_pred             EEEcCCeEEEEECCCCeEE
Q 004737          680 VIGCYETLELWNMTENKTL  698 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~~~~  698 (732)
                      +|+.||+|++|.+..++..
T Consensus       284 sGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  284 SGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ccCCCceEEEEEecCCCch
Confidence            9999999999998766544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.4e-27  Score=244.29  Aligned_cols=267  Identities=19%  Similarity=0.276  Sum_probs=230.2

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRF  500 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~f  500 (732)
                      ....|.+.-+|.+.....+..+.++.+|..+|..+.||||.+||++|+.|..+++||+.+|+..+.+. +|...+.+++|
T Consensus       241 saSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W  320 (519)
T KOG0293|consen  241 SASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAW  320 (519)
T ss_pred             eccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEE
Confidence            34556777788877777788899999999999999999999999999999999999999999988774 34678999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG  579 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~  579 (732)
                      .|||..+++|+.|++|..||++...  .....+- ...|.+++..+||+.+++++ .|..|++|+.++......+..+.+
T Consensus       321 ~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~  397 (519)
T KOG0293|consen  321 CPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQP  397 (519)
T ss_pred             ccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCc
Confidence            9999999999999999999998643  3333332 25699999999998888555 699999999998888878888899


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGEC  655 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~--~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~  655 (732)
                      ++++.++.+++++++.-.+..|.+||++..+.+..+.+|+-  .|..-||.- +..++++|+ |+.|+||+..++   +.
T Consensus       398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kl  474 (519)
T KOG0293|consen  398 ITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KL  474 (519)
T ss_pred             eeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ce
Confidence            99999999999999999999999999998888888888865  344456654 458999999 999999999988   89


Q ss_pred             EEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCC
Q 004737          656 IHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       656 i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t  694 (732)
                      +.++.+|...|++++|+|.. ..+|+++.||+|+||....
T Consensus       475 l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  475 LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            99999999999999999976 5578888999999997654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.4e-26  Score=241.46  Aligned_cols=276  Identities=24%  Similarity=0.366  Sum_probs=242.7

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      ..|+++...+....+++|+.|..+.++|..+...+.++++|...|+.+.|+++...+++++.|..|+||...... ....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence            458888888887899999999999999999999999999999999999999999999999999999999998765 4667


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc---CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVE  607 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~  607 (732)
                      ...|..+|+.+..+|.|++++ +++.|++..+.|++++.++......   -.+++.+|+|||..|.+|..|+.|+|||+.
T Consensus       299 ~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             cccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence            788999999999999986666 8899999999999999998877764   348999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 004737          608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE  685 (732)
Q Consensus       608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg  685 (732)
                      ....+..|.+|.++|..|+|+.+|.||++++ |+.|++||++..+   .+.++.. ....+.++.|.+.|.+|++++.+=
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l  454 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL  454 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeeccee
Confidence            9999999999999999999999999999999 7789999999874   3333332 234699999999999999998877


Q ss_pred             eEEEEECCCCe--EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          686 TLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       686 ~I~IwDl~t~~--~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .|++++-.+..  .+ .+..|.+..+++.|.....++++++.|..++|+
T Consensus       455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            77777755443  33 566788899999999999999999999998886

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=1.5e-26  Score=237.91  Aligned_cols=262  Identities=21%  Similarity=0.344  Sum_probs=223.5

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEEcCCCeEE----EEeccCCCce
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLWCTESFTVK----STLEEHTQWI  495 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~---~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V  495 (732)
                      ...|..+|+|+...    .....+.||.++|.+++|.....   .|++++.|.++++|-++.++..    ....+|...|
T Consensus       121 gsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V  196 (423)
T KOG0313|consen  121 GSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV  196 (423)
T ss_pred             eecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence            44577788887544    35778999999999888865333   5999999999999998876543    3345999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEecCCC------------------------CceeEEeecCCcceEEEEEcCCCCcEE
Q 004737          496 TDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLL  551 (732)
Q Consensus       496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~------------------------~~~~~~l~~h~~~V~sl~fspdg~~ll  551 (732)
                      -+|+..+++..+++|+.|.+|+||+..+.                        +.++.++.+|..+|.++.|++  ...+
T Consensus       197 ~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~  274 (423)
T KOG0313|consen  197 DSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVI  274 (423)
T ss_pred             eEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCce
Confidence            99999999999999999999999993311                        124567889999999999998  4678


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEe
Q 004737          552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWN  628 (732)
Q Consensus       552 aSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~s  628 (732)
                      ++++.|.+|+.||+.++.++..+.......++.++|....|++|+.|..|++||.+++   .....+.+|.+.|.++.|+
T Consensus       275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws  354 (423)
T KOG0313|consen  275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS  354 (423)
T ss_pred             EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence            8999999999999999999999999999999999999999999999999999999986   4567788999999999999


Q ss_pred             CCCCE-EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          629 TSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       629 pdg~~-Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      |...+ |++++ |+++++||+++..  ..+..+..|...|.++.|... ..|++|+.|.+|+|+...
T Consensus       355 p~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  355 PTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEeccCcceEEEeccc
Confidence            98765 55566 9999999999873  478899999999999999855 469999999999998643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-26  Score=256.92  Aligned_cols=259  Identities=23%  Similarity=0.409  Sum_probs=221.6

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      ..++++||..-+.   .+..|..|.++|..++|+|.+.++++|+.|.+|+||+.++.+++.++.+|-+.|..+.|++.-.
T Consensus        30 sG~IQlWDYRM~t---li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP  106 (1202)
T KOG0292|consen   30 SGVIQLWDYRMGT---LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP  106 (1202)
T ss_pred             Cceeeeehhhhhh---HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc
Confidence            4567788765553   4556889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe----------------
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----------------  569 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~----------------  569 (732)
                      +|+++|.|-+|+||+..+.+ ++..+.||...|+|..|+|. +.++++++-|-+|||||+..-+                
T Consensus       107 WIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~  184 (1202)
T KOG0292|consen  107 WILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ  184 (1202)
T ss_pred             eEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence            99999999999999999876 69999999999999999997 4788899999999999985210                


Q ss_pred             -----------ee--eEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEeCCCCE
Q 004737          570 -----------CA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEY  633 (732)
Q Consensus       570 -----------~i--~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~V~sla~spdg~~  633 (732)
                                 ++  ..+. +..+|..++|+|.-..|++|+.|..|++|.....+  .+-+..+|.+.|.++-|+|...+
T Consensus       185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence                       11  1222 34568999999998999999999999999987543  45567899999999999999999


Q ss_pred             EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          634 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      |++.+ |++|+|||+...   ..+..+......++.++.+|..+. ++++.|+.+.||.++
T Consensus       265 IlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNL-fAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  265 ILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNL-FAAGHDSGMIVFKLE  321 (1202)
T ss_pred             eEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcce-eeeecCCceEEEEEc
Confidence            99988 999999999877   788888888899999999999984 445555555555554

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.3e-26  Score=252.02  Aligned_cols=268  Identities=22%  Similarity=0.385  Sum_probs=231.2

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec-
Q 004737          455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-  533 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~-  533 (732)
                      -+.|+. ...||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+ 
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~  258 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS  258 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence            367773 44667665 46899999999987766666689999999999999999999999999999998664 677777 


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737          534 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC  611 (732)
Q Consensus       534 h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~  611 (732)
                      |...|-+++|.   ..++.+|+.|+.|.++|++..+.... +. +...|..+.|++++.++++|+.|+.+.|||.....+
T Consensus       259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            99999999999   46788999999999999998765544 44 445699999999999999999999999999988899


Q ss_pred             EEEEcCCCCCEEEEEEeCC-CCEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 004737          612 RLKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE  685 (732)
Q Consensus       612 i~~l~~h~~~V~sla~spd-g~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~--dg  685 (732)
                      ...+..|...|.+++|+|- ..+||+|+   |++|++||..++   ..+..+. .+..|.++.|++..+-|+++..  ++
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence            9999999999999999995 56777766   899999999987   5555443 4788999999999987777654  44


Q ss_pred             eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          686 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       686 ~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|.||++.+.+.+ .+.+|...|..++++||+..|++|+.|.++++|+
T Consensus       412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            8999999998777 7889999999999999999999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.6e-27  Score=261.10  Aligned_cols=246  Identities=19%  Similarity=0.319  Sum_probs=202.9

Q ss_pred             EEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC--------------------------------CC-----
Q 004737          484 VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD-----  525 (732)
Q Consensus       484 ~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s--------------------------------~~-----  525 (732)
                      ....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+..                                ..     
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            334455 8999999999999999999999999999998764                                00     


Q ss_pred             ----------------------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEE
Q 004737          526 ----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM  583 (732)
Q Consensus       526 ----------------------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v  583 (732)
                                            .++..|.||.+.|..|.|+.+  ++|++++.|.+|++|++...+|+.+|.|..-|+|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV  415 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV  415 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence                                  124457789999999999976  56779999999999999999999999999999999


Q ss_pred             EEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-
Q 004737          584 RFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-  660 (732)
Q Consensus       584 ~~sp-~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-  660 (732)
                      +|+| |.++|++|+-|+.|+||++...+.+.-.. -..-|+++||.|||++.++|+ +|.+++|+....+.....+... 
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~  494 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH  494 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence            9999 66889999999999999998877665444 447899999999999999999 9999999998763211111111 


Q ss_pred             ----cCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEE-EEccCC--CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          661 ----CTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHD--KLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       661 ----~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~~~~-~~~~h~--~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                          .....|+.+.|.|... .+++.+.|..|+|||.++..++ .+.++.  ..-....|+.||++|+++++|..|+||+
T Consensus       495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~  574 (712)
T KOG0283|consen  495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK  574 (712)
T ss_pred             cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence                1123799999998654 5999999999999999888777 555443  2345668899999999999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=4e-26  Score=228.94  Aligned_cols=270  Identities=18%  Similarity=0.298  Sum_probs=222.5

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCC-CeEE-EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          448 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       448 ~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      ...+.|.+|+||| ...+++.++.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            4567799999999 555677899999999999986 3333 445679999999999999999999999999999999997


Q ss_pred             CceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      .  ...+..|.++|.++.|-+.. ..+|++|+.|++|++||.+....+..+..++.+.++..-.  ..++++..+..|.+
T Consensus       105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~v  180 (347)
T KOG0647|consen  105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAV  180 (347)
T ss_pred             C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEE
Confidence            5  67788899999999998753 3478899999999999999999999999888888776644  46888899999999


Q ss_pred             EECCCCeEEEE-Ec-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC---------CceEEEEE
Q 004737          604 LDVETQVCRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCVF  671 (732)
Q Consensus       604 wDl~t~~~i~~-l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~---------~~I~sl~f  671 (732)
                      |+++.+..... +. .-+-.++||+...|....+.|+ +|.+.|..+..+.. ..-..+++|.         ..|++++|
T Consensus       181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~F  259 (347)
T KOG0647|consen  181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAF  259 (347)
T ss_pred             EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEe
Confidence            99987643222 21 1234688999999888888888 99999999887533 3344555554         24788999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737          672 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       672 spdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      +|....|++++.||++.+||-.....+ ....|..+|++++|+.+|.++|-+
T Consensus       260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            999999999999999999998776555 667899999999999999987755

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=231.00  Aligned_cols=289  Identities=19%  Similarity=0.312  Sum_probs=245.5

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  518 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I  518 (732)
                      .+..++.+.||++.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            55677889999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             EecC------C---------------------------------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737          519 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  559 (732)
Q Consensus       519 WDl~------s---------------------------------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~  559 (732)
                      |...      .                                 -..++..+.+|...|.+..|...+..+ ++++.|.+
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~-vTaSWDRT  295 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM-VTASWDRT  295 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee-eeeecccc
Confidence            9621      0                                 012345688999999999999876555 49999999


Q ss_pred             EEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 004737          560 IRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasg  637 (732)
                      ..+||+++++.+..+..+. ..+.++-+|..+.+++.+.|.++++||++.. ..+..|.+|...|+++.|..+.+ ++++
T Consensus       296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg  374 (481)
T KOG0300|consen  296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG  374 (481)
T ss_pred             ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence            9999999999999888554 4777888898888999999999999999864 56778999999999999987765 4556


Q ss_pred             e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-----EccCCCCeeEEE
Q 004737          638 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-----LSAHDKLVSSLA  711 (732)
Q Consensus       638 s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~-----~~~h~~~V~sla  711 (732)
                      + |.+|+|||+++..  ..+.++. ...+++.++++..++.|+.--.+..|++||+...++..     -.+|...|+|++
T Consensus       375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A  451 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA  451 (481)
T ss_pred             CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence            6 8899999999864  3444444 46788999999999988888888899999999887663     348999999999


Q ss_pred             EeCCC--CEEEEEECCCeEEEeC
Q 004737          712 ASTVN--GMVASASHDKCVKIWK  732 (732)
Q Consensus       712 ~spdg--~~LaSgs~DG~I~IWD  732 (732)
                      |..+.  .-|++|+.|..+.-|+
T Consensus       452 W~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  452 WLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             ccccCcccccccccccceeeeeE
Confidence            98654  3688999999998885

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=254.94  Aligned_cols=260  Identities=22%  Similarity=0.423  Sum_probs=228.0

Q ss_pred             CCCCCceeeeeecCCCceeEEEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~-l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      ....+.++++|+...+..   +.. +.||.+.|.+++|..-+.+|++|+.|.+++|||+.++++...+.+|.+.|.++..
T Consensus       223 ~~s~~~tl~~~~~~~~~~---i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~  299 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYL---ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI  299 (537)
T ss_pred             ecCCCceeEEeecccceE---EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence            345567778898877753   444 9999999999999887889999999999999999999999999999999999988


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CC
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG  579 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~  579 (732)
                      .+  .++++|+.|.+|+||++.++. .+..+.+|.++|.++.++   ..++++|+.|++|++||+.++++++.+..+ ..
T Consensus       300 ~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~  373 (537)
T KOG0274|consen  300 DP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR  373 (537)
T ss_pred             cC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence            54  478889999999999999876 588888899999999998   467889999999999999999999999864 45


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                      |.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-|.++.+  .+++|++++ |++|++||..++   .++.
T Consensus       374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~  447 (537)
T KOG0274|consen  374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLR  447 (537)
T ss_pred             EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceee
Confidence            888877766 89999999999999999999 999999999998866654  567888888 999999999988   7888


Q ss_pred             Eeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          658 ELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       658 ~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      .+.. +...|..+++.  ...+++++.++.+++||++++...
T Consensus       448 ~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  448 TLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             eeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence            8877 56778877776  466999999999999999999877

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.6e-27  Score=253.03  Aligned_cols=270  Identities=23%  Similarity=0.421  Sum_probs=234.4

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCe------EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEee
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFT  532 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~  532 (732)
                      |.++||++||.||.|++|++....      ....++.|.++|.++....+++.|+++|.|-+|++|+..... .+..++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            367789999999999999986422      356778999999999999999999999999999999998764 5678899


Q ss_pred             cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEe----------ccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~----------~~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      .|.+.|.|+++-...+.++++|+-|+.|.+||++++.  .+..+.          ....+.+++.++.+..|+.|+.++.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            9999999999954457899999999999999999873  222221          2345889999999988999999999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737          601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~  679 (732)
                      |++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+...   +|+.++..|...|+++..+|+-.+++
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY  271 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY  271 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence            99999999999999999999999999999999999988 999999999877   89999999999999999999999999


Q ss_pred             EEEcCCeEEEEECCCC-eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          680 VIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~-~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|+.|+.|+.-|+.+. +...+...+.+|..+..+....-+.+++.|+.|+-|.
T Consensus       272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            9999999999999984 3445556777888888876655567788899999884

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.4e-26  Score=240.06  Aligned_cols=243  Identities=19%  Similarity=0.258  Sum_probs=212.5

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCC
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      ++....+.|++++|..||++||+|+..|.|+|||..+...+..+.+|..+|..+.|+| ++..|++|+.|+.+++||+.+
T Consensus        63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~  142 (487)
T KOG0310|consen   63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST  142 (487)
T ss_pred             hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence            3445567899999999999999999999999999777667788899999999999999 566788999999999999998


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .. ....+.+|++.|.|.+|+|....++++|+.||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++ .+.|+
T Consensus       143 a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vk  220 (487)
T KOG0310|consen  143 AY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVK  220 (487)
T ss_pred             cE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence            66 466889999999999999998899999999999999999987 7888899999999999999977776654 47899


Q ss_pred             EEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          603 ILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       603 IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      |||+-+| +.+..+..|...|+|+++..++..|++++ |+.|++||+.+.   +.++.+. ..++|.+++.+|++..+++
T Consensus       221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~vi  296 (487)
T KOG0310|consen  221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVI  296 (487)
T ss_pred             EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEE
Confidence            9999966 55555556999999999999999999999 999999998765   6677665 4688999999999999999


Q ss_pred             EEcCCeEEEEECC
Q 004737          681 IGCYETLELWNMT  693 (732)
Q Consensus       681 gs~dg~I~IwDl~  693 (732)
                      |..+|.+.+-+..
T Consensus       297 GmsnGlv~~rr~~  309 (487)
T KOG0310|consen  297 GMSNGLVSIRRRE  309 (487)
T ss_pred             ecccceeeeehhh
Confidence            9999987776443

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=4.1e-26  Score=224.77  Aligned_cols=241  Identities=24%  Similarity=0.363  Sum_probs=216.2

Q ss_pred             EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737          486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD  564 (732)
                      +.+.+|...|.+|+|+.+|..|++|+.|+++.||+++...... ..+.+|.+.|..++|+|....++++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4456899999999999999999999999999999998764322 256789999999999999999999999999999999


Q ss_pred             CCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737          565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR  643 (732)
Q Consensus       565 l~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~  643 (732)
                      ++.+++...+....+-..+.|+|+|.+++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++... .|+|.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence            9999999999988888899999999999999999999999999988776655 456788899987777666655 79999


Q ss_pred             EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737          644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      |......   +.+..+..|.....|+.|+|+|+++++|+.|..+.+||+.+.-++ .+..++-+|..+.|+.||++||+|
T Consensus       173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence            9998866   788899999999999999999999999999999999999998777 666899999999999999999999


Q ss_pred             ECCCeEEE
Q 004737          723 SHDKCVKI  730 (732)
Q Consensus       723 s~DG~I~I  730 (732)
                      ++|..|-|
T Consensus       250 SEDh~IDI  257 (313)
T KOG1407|consen  250 SEDHFIDI  257 (313)
T ss_pred             CccceEEe
Confidence            99998865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=240.62  Aligned_cols=259  Identities=22%  Similarity=0.350  Sum_probs=221.6

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      .+.|+.+.+|++..+. ...+.++.+..+.|+++.|.++++++++++.|+.+++|++.......++.+|.+.|+++.|.-
T Consensus       193 gg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~  271 (459)
T KOG0288|consen  193 GGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL  271 (459)
T ss_pred             cchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc
Confidence            4456666777765543 556788999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeE
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ  582 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~  582 (732)
                      ....+++|+.|.+|++||+....+ .+++. ....+..|+..   ...+++|-.|+.|++||++...+.......+.|++
T Consensus       272 ~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtS  346 (459)
T KOG0288|consen  272 SHSRVVSGSADRTIKLWDLQKAYC-SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTS  346 (459)
T ss_pred             cccceeeccccchhhhhhhhhhhe-ecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceee
Confidence            777799999999999999998553 44333 23446666665   34667999999999999999999999999999999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC----CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h----~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                      +..++++..+++++.|..+.++|+++......+...    ....+.++|+|++.|+++|+ ||.|+||++.++   ++..
T Consensus       347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~  423 (459)
T KOG0288|consen  347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEK  423 (459)
T ss_pred             EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEE
Confidence            999999999999999999999999998877766532    23578899999999999999 999999999998   5555


Q ss_pred             EeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          658 ELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       658 ~~~~~~~--~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      .+.....  .|++++|+|.|..+++++.++.+.+|
T Consensus       424 ~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  424 VLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             EeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            5544443  59999999999999999999999999

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.9e-26  Score=221.60  Aligned_cols=256  Identities=20%  Similarity=0.302  Sum_probs=210.0

Q ss_pred             eecCCCceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcC-CCeEEEEeccCCCceEEEEEcC-CCCeEE
Q 004737          432 AEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLA  508 (732)
Q Consensus       432 wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~V~~l~fsp-dg~~La  508 (732)
                      .+...+..+.+...+.- .+.+..++|++.. ..+++++.||+++|||+. ...++..+++|..+|.++.|++ ++..++
T Consensus        43 le~~~~~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l  121 (311)
T KOG0277|consen   43 LEVTDPKGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFL  121 (311)
T ss_pred             EecCCCCCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEE
Confidence            33333444445555543 3458999999954 578889999999999965 3467788999999999999998 566788


Q ss_pred             EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEec-cCCeeEEEEe
Q 004737          509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQ  586 (732)
Q Consensus       509 sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~-~~~i~~v~~s  586 (732)
                      +++.|++|++|+...+. .+.++.+|...|....|+|...+++++++.|+++++||++.. +.+. +.. ...+.++.|+
T Consensus       122 tsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~  199 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWS  199 (311)
T ss_pred             eeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeeccc
Confidence            99999999999998766 588999999999999999999999999999999999999864 4444 554 4589999998


Q ss_pred             CC-CCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737          587 PR-LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCT  662 (732)
Q Consensus       587 p~-g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~  662 (732)
                      .- ...+++++.|+.|++||++.- .++..+.+|.-.|+.|+|+|.. .+|++++ |=+++|||.....  .++.+...|
T Consensus       200 ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~H  277 (311)
T KOG0277|consen  200 KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHH  277 (311)
T ss_pred             ccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhcc
Confidence            74 456778888999999999975 6788899999999999999974 5778888 9999999998553  456666677


Q ss_pred             CCceEEEEEeC-CCCEEEEEEcCCeEEEEEC
Q 004737          663 GNKFHSCVFHP-TFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       663 ~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl  692 (732)
                      ..-+..+.|++ +..+++.++-|+.++||+-
T Consensus       278 tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  278 TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ceEEeccccccccCceeeecccccceeeecc
Confidence            88888888887 4567999999999999983

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.6e-24  Score=242.98  Aligned_cols=227  Identities=18%  Similarity=0.276  Sum_probs=184.1

Q ss_pred             EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCceEEEEEcCCC-CeEEEEeCCC
Q 004737          444 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR  514 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg  514 (732)
                      ..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+.       +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            45789999999999999 8899999999999999999764       3467788999999999999975 6999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEE
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI  592 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~l  592 (732)
                      +|+|||+.++. .+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+..+..  ...+.|.+++..+
T Consensus       149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEEEECCCCe-EEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            99999999875 467788899999999999996 5677999999999999999998888775543  4567888988888


Q ss_pred             EEEE----cCCeEEEEECCCCe-EEEEEcCC-CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec-CC
Q 004737          593 LAAA----IENYISILDVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG  663 (732)
Q Consensus       593 l~~s----~dg~I~IwDl~t~~-~i~~l~~h-~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~-~~  663 (732)
                      ++++    .|+.|++||+++.. ++.....+ ...+....|++++.+|++++  |+.|++||+.++.   .+..... ..
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~  303 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV  303 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence            8765    37899999998754 33333323 34566678899999888776  8999999999873   3333322 34


Q ss_pred             CceEEEEEeCCC
Q 004737          664 NKFHSCVFHPTF  675 (732)
Q Consensus       664 ~~I~sl~fspdg  675 (732)
                      .++..++|.|..
T Consensus       304 ~~~~g~~~~pk~  315 (493)
T PTZ00421        304 EPHKGLCMMPKW  315 (493)
T ss_pred             CCCcceEecccc
Confidence            567788888854

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=8.3e-24  Score=223.37  Aligned_cols=264  Identities=13%  Similarity=0.111  Sum_probs=207.8

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  540 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s  540 (732)
                      ++.+++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.++.. ...+..+. .+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence            35788999999999999999998888876544 6789999999876 5667889999999998663 44444443 3578


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCC
Q 004737          541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK  619 (732)
Q Consensus       541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~  619 (732)
                      ++|+|+++.++++++.++.|++||+.+.+.+..+.....+..++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~  156 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD  156 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence            89999988777777788999999999988888777656678899999999999888765 57788999887766554 23


Q ss_pred             CCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 004737          620 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL  689 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~-------~~~I~sl~fspdg~~L~sg-s~dg~I~I  689 (732)
                      ..+.+++|++++.+|++++  ++.|++||+.++   +++..+..+       ......++|+|++++++++ +.++.|.+
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence            4567899999999886554  889999999987   343333211       1123568899999986665 45668999


Q ss_pred             EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE-ECCCeEEEeC
Q 004737          690 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK  732 (732)
Q Consensus       690 wDl~t~~~~~~~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWD  732 (732)
                      ||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus       234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            999998887544556689999999999999886 4689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7.1e-25  Score=221.12  Aligned_cols=267  Identities=19%  Similarity=0.304  Sum_probs=222.4

Q ss_pred             ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC--eEEEEeCCCe
Q 004737          438 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT  515 (732)
Q Consensus       438 ~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~  515 (732)
                      ..+.....+..|.+.|+|++.+  +.|+|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-.  .|++|+.||.
T Consensus        31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCc
Confidence            4556677789999999999995  89999999999999999999999989999999999999998765  8999999999


Q ss_pred             EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737          516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       516 I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~  595 (732)
                      |.+|+...- ..+..+++|.+.|+.++++|.+ .+..+.+.|+.++.||+-.|+...........+.+.|+|.|.+|+++
T Consensus       109 i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  109 IIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             EEEEEcCCe-EEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence            999999975 4688999999999999999996 55667788999999999999988888877777889999999988777


Q ss_pred             EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEE--eC
Q 004737          596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--HP  673 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f--sp  673 (732)
                      .. ..|-||.+++......+. ....+.|+.|...+.+++.+.|+.|++||..+.   .+...+..|..+|-.+.+  .|
T Consensus       187 ~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~  261 (362)
T KOG0294|consen  187 GR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNP  261 (362)
T ss_pred             ec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecC
Confidence            65 568899988876665554 335678888875554444444889999999885   788899999999999884  46


Q ss_pred             CCCEEEEEEcCCeEEEEECCCC-----eEEEEccCCCCeeEEEEe
Q 004737          674 TFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS  713 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~-----~~~~~~~h~~~V~sla~s  713 (732)
                      ++.+|+++++||.|+|||++..     +.+........++|+...
T Consensus       262 ~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~  306 (362)
T KOG0294|consen  262 EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK  306 (362)
T ss_pred             CceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence            7889999999999999999876     333333446677777653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8.4e-25  Score=220.37  Aligned_cols=285  Identities=19%  Similarity=0.273  Sum_probs=214.3

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEec--cCCCceEEEEEcCCCCeEEEE-eCCCeEE
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE--EHTQWITDVRFSPSLSRLATS-SADRTVR  517 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~--~h~~~V~~l~fspdg~~Lasg-s~Dg~I~  517 (732)
                      +..+++|.+.|+|++|+.||++||+++.|++|+||++++++..  +.++  -.-+..+.++|.||-+-++.. -...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4568999999999999999999999999999999999875332  1111  112356889999997755544 4556899


Q ss_pred             EEecCCCC---cee--------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEE
Q 004737          518 VWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRF  585 (732)
Q Consensus       518 IWDl~s~~---~~~--------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~  585 (732)
                      +|.+...+   ...        .....|.-.|..+-.... ..+|++++.|..|.+|+++ |+.+..+... ......+.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            99875321   111        122335556666665544 5778899999999999999 8888777643 34667899


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCC---C-----eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC----CC
Q 004737          586 QPRLGRILAAAIENYISILDVET---Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK  652 (732)
Q Consensus       586 sp~g~~ll~~s~dg~I~IwDl~t---~-----~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~----~~  652 (732)
                      +|+|+++++++..-.|++|++--   |     ..+..+++|...|..++|+++.+.+++.+ ||+++|||+.-.    ..
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            99999999999999999998642   2     34567899999999999999999999999 999999997532    11


Q ss_pred             ceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E-EccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          653 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       653 ~~~i~~~----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~-~~~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      .+.+++.    ...+..-..+.++|.+..|++. ....|.+|..++++.. . ...|...|.+|+|+++|++++||+ |.
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr  394 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR  394 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence            1222222    2223444589999999965554 4557999999998877 3 347999999999999999999987 55


Q ss_pred             eEEEe
Q 004737          727 CVKIW  731 (732)
Q Consensus       727 ~I~IW  731 (732)
                      .+++.
T Consensus       395 ~vrv~  399 (420)
T KOG2096|consen  395 YVRVI  399 (420)
T ss_pred             eeeee
Confidence            66664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=6.1e-24  Score=236.41  Aligned_cols=304  Identities=16%  Similarity=0.267  Sum_probs=245.4

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      .......+|++.++.   .+.++.++...|+++.=+|-=..+|.|..+|+|.|++++..+.+.+|+...+.|+.++|..|
T Consensus       179 s~~G~lql~Nvrt~K---~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtD  255 (910)
T KOG1539|consen  179 SSQGRLQLWNVRTGK---VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTD  255 (910)
T ss_pred             ecCCcEEEEEeccCc---EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccC
Confidence            445566899999885   57788999999999999998889999999999999999999999999855699999999999


Q ss_pred             CCe-EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--------------
Q 004737          504 LSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--------------  568 (732)
Q Consensus       504 g~~-Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~--------------  568 (732)
                      |.. +|+|+..|.+.+||++..+........|.+.|..+.|.|. ..++++++.|..+++|=.+++              
T Consensus       256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~-epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs  334 (910)
T KOG1539|consen  256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG-EPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS  334 (910)
T ss_pred             CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC-CceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence            875 5667777999999999766544444566666666666665 345556665665555422100              


Q ss_pred             --------------------------------------------------------------------------------
Q 004737          569 --------------------------------------------------------------------------------  568 (732)
Q Consensus       569 --------------------------------------------------------------------------------  568 (732)
                                                                                                      
T Consensus       335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv  414 (910)
T KOG1539|consen  335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV  414 (910)
T ss_pred             CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence                                                                                            


Q ss_pred             ------------------ee-eeEEecc------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCC
Q 004737          569 ------------------SC-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKN  620 (732)
Q Consensus       569 ------------------~~-i~~~~~~------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~  620 (732)
                                        .. ...+...      ..+++++.+++|++.+.|...|.|.+|++.+|.....+   ..|.+
T Consensus       415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~  494 (910)
T KOG1539|consen  415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG  494 (910)
T ss_pred             eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence                              00 0011111      23678899999999999999999999999999888888   47999


Q ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc--------------------------------------eeEEEeec
Q 004737          621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG--------------------------------------ECIHELSC  661 (732)
Q Consensus       621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~--------------------------------------~~i~~~~~  661 (732)
                      +|++++.+.-++.+++++ +|.+++||+......                                      +.++.+.+
T Consensus       495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g  574 (910)
T KOG1539|consen  495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG  574 (910)
T ss_pred             ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence            999999998898899888 999999999765310                                      01123557


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC-CeEEEe
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW  731 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW  731 (732)
                      |.+.|+.++|||||++|++++.|++|++||+.++.++-...-+.+++++.|+|+|.+|||+..| .-|++|
T Consensus       575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW  645 (910)
T KOG1539|consen  575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW  645 (910)
T ss_pred             cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence            8899999999999999999999999999999999999777788899999999999999999988 579998

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.9e-23  Score=201.64  Aligned_cols=289  Identities=19%  Similarity=0.263  Sum_probs=235.9

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------C---------eEEEEeccCCCceEEEEEcCC
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------~---------~~~~~l~~h~~~V~~l~fspd  503 (732)
                      .|..+.++. .+..|.+++|.|.|.+.|+|+..++++|.-...      +         -..+.-+.|.+.|+|.+|+|+
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            344444444 456799999999999999999999998874321      1         011233568999999999999


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCce----eEEeecCCcceEEEEEcCC---CCcEEEEEe-CCCcEEEEECCCCeeeeEEe
Q 004737          504 LSRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVFK  575 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~----~~~l~~h~~~V~sl~fspd---g~~llaSgs-~Dg~I~iWDl~t~~~i~~~~  575 (732)
                      |.+|++|+.|++|++..+....+.    -..+.-|.+.|..++|..+   +..++++++ .|..|++-|...+.....+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            999999999999999877643321    2357779999999999753   455666654 57788888999998888887


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--C-----CCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737          576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWSI  647 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h-----~~~V~sla~spdg~~Lasgs-Dg~I~IWDl  647 (732)
                      .+.+-.-.-++-++-.+++++.|.+|++||++-..++.++..  |     ...|.+++..|.|++|++|. |....+||+
T Consensus       181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence            655533344566677889999999999999999988887653  2     25789999999999999999 889999999


Q ss_pred             CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-----EEEEccCCCCeeEEEEeCCCCEEEEE
Q 004737          648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~-----~~~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      +.+   ..+..+..|...|.++.|+|...|+++++.|..|++-|+...-     .+....|...+..+.|+|..-.+++.
T Consensus       261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS  337 (350)
T ss_pred             eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence            998   8899999999999999999999999999999999999986532     33666899999999999999899999


Q ss_pred             ECCCeEEEe
Q 004737          723 SHDKCVKIW  731 (732)
Q Consensus       723 s~DG~I~IW  731 (732)
                      +.|.++.+|
T Consensus       338 sadkt~tlw  346 (350)
T KOG0641|consen  338 SADKTATLW  346 (350)
T ss_pred             cCcceEEEe
Confidence            999999999

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=8.9e-25  Score=239.09  Aligned_cols=274  Identities=16%  Similarity=0.266  Sum_probs=231.3

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEeccCCCceEE-EEEcC-CCCeEEEEeCCCeEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTVR  517 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~V~~-l~fsp-dg~~Lasgs~Dg~I~  517 (732)
                      .-+.+.+|+..|..|++.++. .+++++.||+++||+-...+.+  +.+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|.
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~   84 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII   84 (745)
T ss_pred             eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence            456789999999999987554 8999999999999997655443  456788888888 88886 555699999999999


Q ss_pred             EEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEE
Q 004737          518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       518 IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      +|...... ++.++.+|...|.|++...++.  +++|+.|.++++|.+.  ++...+. |...|..+..-|++ .+++|+
T Consensus        85 v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgs  158 (745)
T KOG0301|consen   85 VFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGS  158 (745)
T ss_pred             EEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEecc
Confidence            99999765 7899999999999999887753  6699999999999874  4555455 44568889988886 899999


Q ss_pred             cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737          597 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       597 ~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                      .|..|++|.-  ++++.+|.+|...|+.+++-+++.++.++.||.|++|++. +   .++.++.+|.+-++++....++.
T Consensus       159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g---e~l~~~~ghtn~vYsis~~~~~~  232 (745)
T KOG0301|consen  159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G---EVLLEMHGHTNFVYSISMALSDG  232 (745)
T ss_pred             CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C---ceeeeeeccceEEEEEEecCCCC
Confidence            9999999976  6788899999999999999998877766669999999994 4   79999999999999999888888


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEccCCC-CeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          677 SLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       677 ~L~sgs~dg~I~IwDl~t~~~~~~~~h~~-~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .++++++|++++||+..  ++.....|.. .|+++.+-++|. |++|++||.|+||
T Consensus       233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence            89999999999999977  5554444544 899999887775 6778899999998

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.3e-24  Score=237.03  Aligned_cols=307  Identities=15%  Similarity=0.200  Sum_probs=247.9

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC-----------CCEEEEEECCCcEEEEEcCCCeEEEEe-----
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFTVKSTL-----  488 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd-----------g~~Lasgs~Dg~I~VWd~~t~~~~~~l-----  488 (732)
                      .|..+-+||+.+-........+-.|..-|+.+.--|-           ...+++++.|++|++||++.+..-.++     
T Consensus       344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil  423 (1080)
T KOG1408|consen  344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL  423 (1080)
T ss_pred             cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence            4677788888887777778888889988888876661           125899999999999998753211110     


Q ss_pred             --------------------------------ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCc
Q 004737          489 --------------------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  536 (732)
Q Consensus       489 --------------------------------~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~  536 (732)
                                                      .+..-.|.+++.+|++.+||+|..-|+++||++.+-.+ ......|..
T Consensus       424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHes  502 (1080)
T KOG1408|consen  424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHES  502 (1080)
T ss_pred             hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccc
Confidence                                            01234599999999999999999999999999997654 567788999


Q ss_pred             ceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-CeeeeEEec-cCCeeEEEEeCCC--CEEEEEEcCCeEEEEECCCCe
Q 004737          537 TVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQV  610 (732)
Q Consensus       537 ~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~-~~~i~~v~~sp~g--~~ll~~s~dg~I~IwDl~t~~  610 (732)
                      +|.|+.|+.-  +..+|++++.|..|.|||+.. ...+.++.. ...|+++.|...|  ...++++.|..|.+--..+..
T Consensus       503 EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~  582 (1080)
T KOG1408|consen  503 EILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS  582 (1080)
T ss_pred             eeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc
Confidence            9999999842  467899999999999999964 344555554 4669999998877  678888888887654433222


Q ss_pred             EEEEEcC-----CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          611 CRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       611 ~i~~l~~-----h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      ....+..     ....++.++..|..+++++++ |..|+|||+.+++..+.++.-..+++....+...|.|.||++.+.|
T Consensus       583 ~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  583 SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence            1222221     235788999999999999999 9999999999996655555556677889999999999999999999


Q ss_pred             CeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          685 ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       685 g~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++.+||..+++++ ...+|...|+.+.|.+|.+.|++.+.||.|.||+
T Consensus       663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  663 KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             CceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            99999999999999 8889999999999999999999999999999995

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=1.2e-24  Score=249.30  Aligned_cols=252  Identities=21%  Similarity=0.331  Sum_probs=214.3

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------------------CeEEEEeccCCCceEEEEEcC
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      ..+.+...|.+.|+|+.|++||+|||+|++|+.|.||....                  .+.+..+.+|...|.+++|+|
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            45677889999999999999999999999999999998662                  246778899999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-----
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----  577 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-----  577 (732)
                      ++.+||+++.|++|.|||..+. ..++.+.+|.+.|..+.|.|-| .+||+-++|++|+||++.+..+.+.+..+     
T Consensus       140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~  217 (942)
T KOG0973|consen  140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP  217 (942)
T ss_pred             CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence            9999999999999999999998 5689999999999999999997 56779999999999998877777666532     


Q ss_pred             --CCeeEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC-----CC------------EE
Q 004737          578 --SGATQMRFQPRLGRILAAAI----ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GE------------YL  634 (732)
Q Consensus       578 --~~i~~v~~sp~g~~ll~~s~----dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd-----g~------------~L  634 (732)
                        .....+.|+|||.+|++...    ...+.|.+..+.+.-..+-+|..++.++.|+|.     ..            .+
T Consensus       218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~  297 (942)
T KOG0973|consen  218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA  297 (942)
T ss_pred             CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence              23678999999999988765    247999999999999999999999999999981     11            45


Q ss_pred             EEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          635 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       635 asgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                      ++|+ |++|.||........-.+  .......|..++|+|||..|++++.||+|.++.+++.+
T Consensus       298 AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  298 AVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             EEecCCccEEEEecCCCCchhhh--hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            6677 999999998665332222  23346789999999999999999999999999987654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.1e-25  Score=226.55  Aligned_cols=275  Identities=20%  Similarity=0.325  Sum_probs=227.2

Q ss_pred             cCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc
Q 004737          400 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  479 (732)
Q Consensus       400 ~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~  479 (732)
                      ...|+.+|+.|+-++.|....+....           ...+..--.+--|..+|.|++||.|...||+|+.||.|+||.+
T Consensus       224 DgqyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  224 DGQYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI  292 (508)
T ss_pred             CCceEeeccccceeeeehhccchhhh-----------hhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence            33677777765555555322222111           1122222345568899999999999999999999999999999


Q ss_pred             CCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737          480 ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  558 (732)
Q Consensus       480 ~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg  558 (732)
                      ++|.+++.|. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+++ +++.+.+|...|+...|.++|..++ +++.||
T Consensus       293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDg  370 (508)
T KOG0275|consen  293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTDDGHHII-SASSDG  370 (508)
T ss_pred             ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcCCCCeEE-EecCCc
Confidence            9999999996 899999999999999999999999999999999987 5899999999999999999986665 999999


Q ss_pred             cEEEEECCCCeeeeEEecc---CCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEeCCC
Q 004737          559 EIRYWSINNGSCAGVFKCQ---SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSG  631 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~V~sla~spdg  631 (732)
                      +|++|+.++.+|+.+++..   -.|..+...|.. ..++++...++|+|.++. +..++.+..   ..+...+.+.+|.|
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence            9999999999999988743   347777777754 568888888999999986 455555543   34567788899999


Q ss_pred             CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          632 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       632 ~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      .++++.+ |+.++.|.+.++   ...+++..|+..+..++-+|..+.+++-+.||.+++|.
T Consensus       450 ewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            9999988 999999999988   67778888999999999999999999999999999994

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=3e-24  Score=216.45  Aligned_cols=269  Identities=19%  Similarity=0.268  Sum_probs=220.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      ..+.|..+.|+|.+..|++++.||++++||+........+ .|..++.+++|.+ ...+++|+.||.|+.+|+.++.  .
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--E   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--c
Confidence            3567999999999899999999999999999987665555 4899999999987 4679999999999999999865  4


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  608 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t  608 (732)
                      ..+..|...|.||.+++.. ..+++|+.|++|++||.+.......+.....|.++...  ++.|++|+.+..|.+||+++
T Consensus        88 ~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            6677799999999999874 56669999999999999987777777766777777664  57899999999999999998


Q ss_pred             CeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCC---------CceEEEEEeCCC
Q 004737          609 QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTG---------NKFHSCVFHPTF  675 (732)
Q Consensus       609 ~~~i~~l~--~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~---------~~I~sl~fspdg  675 (732)
                      ........  .-+-.++||++.|++.-+++++ ||.|.+=.+..... ......+++|.         .+|++++|+|-.
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            75544222  2345789999999887777777 99887766655411 12233455553         468999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737          676 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH  724 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~  724 (732)
                      ..|++|+.||.|.+||+.+.+.+ .+...+..|..++|+.+|..||+++.
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999998877 56566778999999999999999873

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.7e-23  Score=237.82  Aligned_cols=245  Identities=17%  Similarity=0.198  Sum_probs=188.3

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCe--------EEEEeccCCC
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQ  493 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~--------~~~~l~~h~~  493 (732)
                      .+.+..+++|+..+.   ..+..+.+|.+.|.+|+|+|+ +.+||+|+.|++|+|||+.++.        .+..+.+|..
T Consensus        50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK  126 (568)
T ss_pred             CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence            445678889987765   356788999999999999996 7899999999999999997542        3446788999


Q ss_pred             ceEEEEEcCCCCe-EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737          494 WITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  572 (732)
Q Consensus       494 ~V~~l~fspdg~~-Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~  572 (732)
                      .|.+++|+|++.. |++++.|++|+|||++++.. ...+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+.
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence            9999999998875 57899999999999998764 44444 567899999999975 56678889999999999999988


Q ss_pred             EEeccCC-ee-----EEEEeCCCCEEEEEEcCC----eEEEEECCC-CeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe-
Q 004737          573 VFKCQSG-AT-----QMRFQPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       573 ~~~~~~~-i~-----~v~~sp~g~~ll~~s~dg----~I~IwDl~t-~~~i~~l~--~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      .+..+.. +.     ...|+++++++++++.++    .|+|||++. ..++..+.  .+.+.+......+++.++++|+ 
T Consensus       204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            8876543 22     223458889999988774    799999995 45554443  2333444444455688888887 


Q ss_pred             CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737          639 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       639 Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg  675 (732)
                      |+.|++|++..+. ...+..+. +..++.+++|.|..
T Consensus       284 D~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        284 DGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             CCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence            9999999998752 22333333 55778889999975

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.7e-24  Score=215.20  Aligned_cols=259  Identities=18%  Similarity=0.310  Sum_probs=207.5

Q ss_pred             EEEEECCCcEEEEEcC------------CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737          465 LATGGHDKKAVLWCTE------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~~------------t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      |++|++...|.-+++.            +...+..+..|.++|++++.  ++.++|+|+.|-+|+|||+.... .+..+.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~-qlg~ll   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK-QLGILL   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchh-hhccee
Confidence            4555555555555433            12235567889999999999  58899999999999999999755 477788


Q ss_pred             cCCcceEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          533 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV  610 (732)
Q Consensus       533 ~h~~~V~sl~fspdg~-~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~  610 (732)
                      .|.+.|+++.|.+.-. .-|++|+.||.|.+|+....+++..++.+ +.|+.++++|.++..++.+.|+.++.||+-+++
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            8999999999998643 23449999999999999999999999854 459999999999999999999999999999887


Q ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          611 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       611 ~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      .-+.+.- ...-+.|.|+|.|.+++.+....|-||.+.+.   ..+.++. ....+.++.|.. +..+++|+.|+.|.+|
T Consensus       161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~-~~~r~l~~~~l~-~~~L~vG~d~~~i~~~  234 (362)
T KOG0294|consen  161 VAFVLNL-KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIE-NPKRILCATFLD-GSELLVGGDNEWISLK  234 (362)
T ss_pred             cceeecc-CCcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhh-ccccceeeeecC-CceEEEecCCceEEEe
Confidence            6655542 22334599999999999999888999999875   2222222 224566666654 4569999999999999


Q ss_pred             ECCCCeEE-EEccCCCCeeEEEE--eCCCCEEEEEECCCeEEEeC
Q 004737          691 NMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       691 Dl~t~~~~-~~~~h~~~V~sla~--spdg~~LaSgs~DG~I~IWD  732 (732)
                      |..+..+. .+.+|.+.|-++.+  .|++.+|+|++.||.|+|||
T Consensus       235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            99987777 77799999999985  45678999999999999997

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5e-24  Score=224.21  Aligned_cols=273  Identities=20%  Similarity=0.286  Sum_probs=223.9

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-E---E-------------e-ccCCCceEEEEEcCCC
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-S---T-------------L-EEHTQWITDVRFSPSL  504 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~---~-------------l-~~h~~~V~~l~fspdg  504 (732)
                      +..+..|.-.|+||+++||.+++++++.|++|.=|++.+++.. .   +             - +.|...|.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            6778899999999999999999999999999999999887643 1   1             0 2688899999999999


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEE
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM  583 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v  583 (732)
                      +|||+|+.|..|.||+.++.. .+..+.+|.+.|.+++|-.. ..-+++++.|..|++|++.....+.++. ++..|..+
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~g-t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKG-TSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-hhhcccccccceeeeeeecC-ccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            999999999999999999876 57889999999999999865 4555688999999999998877665544 56778888


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-c
Q 004737          584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C  661 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~  661 (732)
                      ........+-+++.|.++++|++.. .....+.++.+.+-|++|-.+.. +++|+ +|.|.+|++...   +++.... .
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KK---kplf~~~~A  367 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKK---KPLFTSRLA  367 (479)
T ss_pred             chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeeccc---CceeEeecc
Confidence            8887777777777999999999944 33445677899999999986655 55566 999999999876   3333221 1


Q ss_pred             C-----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe----EEEEccCCCCeeEEEEeCCCCEEEEE
Q 004737          662 T-----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       662 ~-----------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~----~~~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      |           ..+|++++..|....+++|+.+|.|++|-+.++-    ++.-..-.+.|++++|+++|+.|++|
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            1           1389999999999999999999999999998882    22333567899999999999966655

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=5.2e-24  Score=233.58  Aligned_cols=259  Identities=20%  Similarity=0.286  Sum_probs=221.7

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCC
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLS  505 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~  505 (732)
                      ..+-+|+..++... .+  ...+.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|.  +.
T Consensus       197 ~~vylW~~~s~~v~-~l--~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~  271 (484)
T KOG0305|consen  197 QSVYLWSASSGSVT-EL--CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS  271 (484)
T ss_pred             ceEEEEecCCCceE-Ee--EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--Cc
Confidence            45567777777532 22  223388999999999999999999999999999999999999988 99999999997  67


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMR  584 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~  584 (732)
                      .+.+|+.|+.|.++|++.......++.+|...|..+.|++|+ ..+++|+.|+.|.|||....+....+. +...|..++
T Consensus       272 ~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a  350 (484)
T KOG0305|consen  272 VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA  350 (484)
T ss_pred             eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence            899999999999999998776556688999999999999996 677799999999999997666655554 567799999


Q ss_pred             EeCCCC-EEEEEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEE
Q 004737          585 FQPRLG-RILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       585 ~sp~g~-~ll~~s--~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~  658 (732)
                      |+|-.. .|++|+  .|+.|++||+.++..+..+. ....|.+|.|++..+-|+++.   ++.|.||++.+.   ..+..
T Consensus       351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~  426 (484)
T KOG0305|consen  351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAE  426 (484)
T ss_pred             eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeee
Confidence            999654 455543  48999999999999888776 567899999999987666654   779999999886   78889


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +.+|...|..++++|||..+++++.|.++++|++-+.
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999999999998764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.5e-25  Score=238.51  Aligned_cols=307  Identities=16%  Similarity=0.212  Sum_probs=250.0

Q ss_pred             CCCCCceeeeeecCCCcee--E-EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEeccCCCceE
Q 004737          422 ADPRDRVGRSAEVGKGFTF--T-EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWIT  496 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~--~-~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~V~  496 (732)
                      ..++|..++.|+.......  . .+..+..|.+.|+.++...+++.|++++.|-+|++|+....  -+..++..|.+.|.
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk  121 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK  121 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence            5677888888887654332  2 36678999999999999999999999999999999999877  56788899999999


Q ss_pred             EEEE-cCCCCeEEEEeCCCeEEEEecCCCCc---------eeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 004737          497 DVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  565 (732)
Q Consensus       497 ~l~f-spdg~~Lasgs~Dg~I~IWDl~s~~~---------~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl  565 (732)
                      |+++ .++...+|+|+.|+.|.|||+.++..         ....+. ++..+|++++.++.+ .++++|+..+.|++||.
T Consensus       122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp  200 (735)
T KOG0308|consen  122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP  200 (735)
T ss_pred             eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence            9999 88889999999999999999996521         122333 889999999999986 78889999999999999


Q ss_pred             CCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737          566 NNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR  643 (732)
Q Consensus       566 ~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~  643 (732)
                      ++++.+..+.. ...|.++..+.+|..+++++.||+|++||+...+|+.++..|...|+++..+|+-.++++|+ |+.|.
T Consensus       201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~  280 (735)
T KOG0308|consen  201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY  280 (735)
T ss_pred             ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence            99888877764 45699999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--------EE---------------
Q 004737          644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------TL---------------  700 (732)
Q Consensus       644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--------~~---------------  700 (732)
                      .=|+++......+.   ....+|..+..+.+..-+.+++.|+.|+-|..+-...+        ..               
T Consensus       281 ~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~  357 (735)
T KOG0308|consen  281 RTDLRNPAKSTLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD  357 (735)
T ss_pred             ecccCCchhheEee---cCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence            99999863322222   24567777777766655688888999999966432211        00               


Q ss_pred             --ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          701 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       701 --~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                        ......|...+.-.|.++++|-..+|.+.+||
T Consensus       358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD  391 (735)
T KOG0308|consen  358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD  391 (735)
T ss_pred             eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence              01112334444556778999999999999997

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.1e-24  Score=225.72  Aligned_cols=240  Identities=22%  Similarity=0.322  Sum_probs=201.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  526 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~  526 (732)
                      ++|...|.|++.|+||+|||+|+.|..|.||+..+++.+..+.+|.+.|.+++|-.....|++++.|++|++|+++...+
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            48999999999999999999999999999999999999999999999999999998888999999999999999997664


Q ss_pred             eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV  606 (732)
Q Consensus       527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl  606 (732)
                       +.++.+|.+.|..|....- ..++.+|+.|+++++|++.....+....+.+.+.|++|..+ .++++|+.+|.|.+|++
T Consensus       279 -vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  279 -VETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL  355 (479)
T ss_pred             -HHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence             7889999999999998765 46777888999999999954443333334457889998876 88999999999999999


Q ss_pred             CCCeEEEEEcC-C-----------CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEe
Q 004737          607 ETQVCRLKLQG-H-----------KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFH  672 (732)
Q Consensus       607 ~t~~~i~~l~~-h-----------~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fs  672 (732)
                      -+.+++++... |           ..+|++++..|...++++|+ +|.|++|-+..+.. ...+..+. ..+.|++++|+
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~  434 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS  434 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence            99988876542 2           23899999999999999999 99999999988732 24455554 56789999999


Q ss_pred             CCCCEEEEEEc-CCeEEEE
Q 004737          673 PTFPSLLVIGC-YETLELW  690 (732)
Q Consensus       673 pdg~~L~sgs~-dg~I~Iw  690 (732)
                      ++|++++++.. ...+--|
T Consensus       435 ~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  435 NSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             cCCCEEEEeccccccccee
Confidence            99997776643 3344334

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.8e-24  Score=214.16  Aligned_cols=277  Identities=20%  Similarity=0.312  Sum_probs=220.7

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      -.||.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|++.|..|.+||+..+. ++..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence            7899999999999999999999999999999888999999999999999999999999999999999999987 455554


Q ss_pred             cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-c----cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C----QSGATQMRFQPRLGRILAAAIENYISILDVE  607 (732)
Q Consensus       533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~----~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~  607 (732)
                       ...+|+.+.|+|...+.++++-.+..-.+.++..++....-. .    .....+..|.+.|+++++|...|.+.+||.+
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence             578999999999877777666555555566655422111111 1    1123345689999999999999999999999


Q ss_pred             CCeEEEEEcCCC-CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC------ceeEEEee--cCCCceEEEEEeCCCCE
Q 004737          608 TQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GECIHELS--CTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       608 t~~~i~~l~~h~-~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~------~~~i~~~~--~~~~~I~sl~fspdg~~  677 (732)
                      +.+++..++-.. ..|..|.|+..|++|+.-+ |..|+.|++..-..      .+..+.+.  .....-.+|+|+.+|.|
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY  263 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY  263 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence            999998887655 6899999999999999877 99999999874211      11111111  12344678999999999


Q ss_pred             EEEEEcCC-eEEEEECCCCeEE-EEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          678 LLVIGCYE-TLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       678 L~sgs~dg-~I~IwDl~t~~~~-~~~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++++... .+|||....|.++ .+.+.+ .....+.|+|-...|++- ..|.|+||.
T Consensus       264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            98887544 8999999999988 444555 567889999999888887 778999993

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=9.6e-23  Score=196.79  Aligned_cols=290  Identities=18%  Similarity=0.275  Sum_probs=226.9

Q ss_pred             cccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 004737          396 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  475 (732)
Q Consensus       396 ~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~  475 (732)
                      .+.+-..+.+.|+...+++....++-.+.+-..    +..+..+....+.-+.|.+.|+|.+|+|+|.+||+|+.|++|+
T Consensus        39 ~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik  114 (350)
T KOG0641|consen   39 AFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK  114 (350)
T ss_pred             EecCCCceEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence            334444566777777766665444443332211    1122223334456678999999999999999999999999999


Q ss_pred             EEEcC--CCeE---EEEeccCCCceEEEEEcCC----CCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEE-Ec
Q 004737          476 LWCTE--SFTV---KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FH  544 (732)
Q Consensus       476 VWd~~--t~~~---~~~l~~h~~~V~~l~fspd----g~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~-fs  544 (732)
                      +.-..  +...   ...+.-|.+.|.+++|..+    +.+|++++ .|..|++-|...+. .+..+.+|++.|.++- |+
T Consensus       115 ~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghilalyswn  193 (350)
T KOG0641|consen  115 VLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHILALYSWN  193 (350)
T ss_pred             EEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEEEEEEec
Confidence            97543  3222   2345669999999999653    45677664 36677777877766 5889999999998874 44


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 004737          545 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  616 (732)
Q Consensus       545 pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~  616 (732)
                         ..++++|+.|.+|++||++-..++.++...        ..|..+++.|.|+.++++-.|....+||++.++.+..+.
T Consensus       194 ---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~  270 (350)
T KOG0641|consen  194 ---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH  270 (350)
T ss_pred             ---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC
Confidence               578999999999999999999998877521        348899999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       617 ~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      .|...|.|+.|+|...|+++|+ |..|++-|+...-. .-.+.....|...+..|.|+|..-.+++.+.|.++.+|-+.
T Consensus       271 phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  271 PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            9999999999999999999999 99999999875321 23455566788999999999999889999999999999764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=3e-22  Score=211.42  Aligned_cols=280  Identities=14%  Similarity=0.124  Sum_probs=208.8

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      ..|..+++|+..++..   +..+..|.. +.+++|+|+++++ ++++.++.|++||..+++....+..+.. +..++|+|
T Consensus         8 ~~d~~v~~~d~~t~~~---~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~   82 (300)
T TIGR03866         8 EKDNTISVIDTATLEV---TRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHP   82 (300)
T ss_pred             cCCCEEEEEECCCCce---EEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECC
Confidence            3456788888877653   444555544 7789999999976 5667889999999999988877765544 57889999


Q ss_pred             CCCeEEEE-eCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee
Q 004737          503 SLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT  581 (732)
Q Consensus       503 dg~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~  581 (732)
                      +++.++++ +.|+.|++||+.+.. .+..+. +...+.+++|+|++..++++...+..+.+||.++++....+.....+.
T Consensus        83 ~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  160 (300)
T TIGR03866        83 NGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPR  160 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence            99977655 568999999998754 344444 234578899999986665444333467888999888776665556678


Q ss_pred             EEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCC-----C--CEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC
Q 004737          582 QMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSGEYLASVS--DELVRVWSIGSGS  651 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~-----~--~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~  651 (732)
                      .+.|++++.++++++ .++.|++||+++++.+..+..+.     .  ....++|+|++++++++.  ++.|.+||+.+. 
T Consensus       161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-  239 (300)
T TIGR03866       161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-  239 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence            899999999887665 58999999999988776654221     1  235688999999865543  678999999876 


Q ss_pred             CceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEccCCCCeeEEEEeC
Q 004737          652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAAST  714 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~~~h~~~V~sla~sp  714 (732)
                        +.+..+. +...+.+++|+|++.+|+++. .++.|.+||+.+++.+.........+.++++|
T Consensus       240 --~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       240 --EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             --cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence              3333332 345788999999999998874 58899999999999874334556678888865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=1.8e-23  Score=206.64  Aligned_cols=233  Identities=19%  Similarity=0.293  Sum_probs=210.8

Q ss_pred             EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                      .+.+|..+++.|.|+.+|.+|++|+.|.++.||-..+++ .+-++.+|.+.|+|++.+.+. ..+++|+.|.++++||++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcC
Confidence            357899999999999999999999999999999988776 588999999999999999885 455599999999999999


Q ss_pred             CCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737          567 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-----NYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL  634 (732)
Q Consensus       567 t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~-------t~~~i~~l~~h~~~V~sla~spdg~~L  634 (732)
                      +|+++..++....|..+.|+++++.++++..+     +.|.+||++       ..++...+..+...++.+-|.|-+++|
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            99999999999999999999999988887763     579999998       456678888889999999999999999


Q ss_pred             EEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEe
Q 004737          635 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS  713 (732)
Q Consensus       635 asgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~s  713 (732)
                      ++|. ||.|.+||++++.  +.+.....|...|+.+.+++|..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus       163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais  240 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS  240 (327)
T ss_pred             EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence            9999 9999999999874  556666778889999999999999999999999999999999999877888999999999


Q ss_pred             CCCCEEEEEE
Q 004737          714 TVNGMVASAS  723 (732)
Q Consensus       714 pdg~~LaSgs  723 (732)
                      |....++.|+
T Consensus       241 P~~d~VilgG  250 (327)
T KOG0643|consen  241 PLLDHVILGG  250 (327)
T ss_pred             cccceEEecC
Confidence            9888777765

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.1e-23  Score=221.44  Aligned_cols=283  Identities=17%  Similarity=0.252  Sum_probs=236.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--CeEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      ..+.|+|+.|+|...+|++|+.|++++||-++.  ...+..+.--..+|.+.+|.|+|. .+++++.....++||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            346799999999999999999999999998763  445666666678999999999999 89999999999999998866


Q ss_pred             ce-eEEeecCC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          526 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       526 ~~-~~~l~~h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      .. +....++. ..+....+++++. +|+..+..|.|.+....+++.+..++.++.+..++|+.++..|++++.+|.|++
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            42 22233333 3567788899975 666888899999999999999999999999999999999999999999999999


Q ss_pred             EECCCCeEEEEEcCCCC-CEEEEEEeCCCCEEEEEe-CCeEEEEECCCC---CCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          604 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~-~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~---~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      ||++...++.++....+ .-+++|.++++.||++|+ .|.|.|||..+.   ..++++..+......|+++.|+++...|
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            99999999988874222 336788889999999999 789999997653   3356777777778899999999999988


Q ss_pred             EEEEcC--CeEEEEECCCCeEE-EEc---cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          679 LVIGCY--ETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       679 ~sgs~d--g~I~IwDl~t~~~~-~~~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.++..  ..+++..+.+.... .+.   ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus       451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            888764  48999998887776 222   3345799999999999999999999999995

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.7e-24  Score=227.04  Aligned_cols=278  Identities=18%  Similarity=0.256  Sum_probs=234.0

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      -.|..-|.++.+|...++++||+. |.|+|||+..-   ..+..+.  .....|.++.+.|||+.|++|++-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            368888999999999999999985 89999999743   2233332  24567999999999999999999999999999


Q ss_pred             CCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC
Q 004737          522 ENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       522 ~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      ......++ .+....-.+.+++.+||. .+.++|..||.|.|||+.+...++.|.. ..++.|+.++++|..|.+|+-|+
T Consensus       495 AapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence            98765443 233333457889999996 5555777799999999999999999985 46799999999999999999999


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      +|+.||+++++.+.... ....|.++..+|.+.+|++|- ++.+.|......    ..+.+.-|+..|.++.|.+.|+++
T Consensus       574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCcee
Confidence            99999999987665543 467899999999999999999 778888887654    334556688999999999999999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          679 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ++.+.|+.+..|.+.-|..+.-......|.++.++.|++||+||+.|....||
T Consensus       649 vStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             eecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence            99999999999999988888666778899999999999999999999877776

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=4.2e-23  Score=207.31  Aligned_cols=277  Identities=18%  Similarity=0.255  Sum_probs=213.7

Q ss_pred             cccccCCCcccEEEEecCCCCcccccCCcccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEec
Q 004737          368 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  447 (732)
Q Consensus       368 ~l~~~~s~~~s~l~~s~~~~~~~~~~~~~l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~  447 (732)
                      .+...+.++++.+.|++-              .+.++..+                ++|..+|+|++.....+.. +...
T Consensus        21 ev~~pP~DsIS~l~FSP~--------------~~~~~~A~----------------SWD~tVR~wevq~~g~~~~-ka~~   69 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQ--------------ADNLLAAG----------------SWDGTVRIWEVQNSGQLVP-KAQQ   69 (347)
T ss_pred             ecCCCcccchheeEeccc--------------cCceEEec----------------ccCCceEEEEEecCCcccc-hhhh
Confidence            444455567788888861              22344444                4567778888877422222 5677


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC--eEEEEeCCCeEEEEecCCCC
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      .|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+...  .|+|||.|++|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            899999999999999999999999999999999984 456668999999999988655  89999999999999999765


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEe--ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK--CQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                       ++.++. -.+.|++++.-   ..+++.+..+..|.+|+++++.... .+.  ..-.+.|+++..+...++.|+.+|.+.
T Consensus       149 -pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  149 -PVATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             -eeeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence             344443 34678888765   4567777779999999997654332 222  224488999999888889999999999


Q ss_pred             EEECCCC--eEEEEEcCCCC---------CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737          603 ILDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       603 IwDl~t~--~~i~~l~~h~~---------~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~  670 (732)
                      |..+..+  +.-..|+.|..         .|++|+|+|....|++++ ||++.+||-...   ..+++...+..+|+++.
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~  300 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCS  300 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeE
Confidence            9988876  44455666652         578899999877777766 999999998766   66777788999999999


Q ss_pred             EeCCCCEEEEEEcC
Q 004737          671 FHPTFPSLLVIGCY  684 (732)
Q Consensus       671 fspdg~~L~sgs~d  684 (732)
                      |+.+|.+++.+...
T Consensus       301 fn~~G~ifaYA~gY  314 (347)
T KOG0647|consen  301 FNRNGSIFAYALGY  314 (347)
T ss_pred             ecCCCCEEEEEeec
Confidence            99999988876543

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.6e-24  Score=207.46  Aligned_cols=248  Identities=21%  Similarity=0.296  Sum_probs=203.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEEe
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  520 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWD  520 (732)
                      -..|.+.|..+...--|+.|||++.|++|+||.++..   +.+.++.+|.++|+.++|..  -|.+||++++||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            4579999999999889999999999999999998753   57789999999999999965  699999999999999999


Q ss_pred             cCCCCce-eEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCC-e-ee-e-EEeccCCeeEEEEeCC---C--
Q 004737          521 TENPDYS-LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG-S-CA-G-VFKCQSGATQMRFQPR---L--  589 (732)
Q Consensus       521 l~s~~~~-~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~-~-~i-~-~~~~~~~i~~v~~sp~---g--  589 (732)
                      -+++... ...+..|...|++++|.|.+ ..+|++++.||.|.|.+.+.. . .. + ..-+.-++++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            9887542 33567899999999999975 356778889999999998764 1 11 1 1224567999999986   4  


Q ss_pred             ---------CEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCC----CEEEEEe-CCeEEEEECCCCCCc
Q 004737          590 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG  653 (732)
Q Consensus       590 ---------~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg----~~Lasgs-Dg~I~IWDl~t~~~~  653 (732)
                               ++|++++.|+.|+||+...+  +...++.+|.+.|+.++|.|.-    .+|++|+ ||+|.||..+.....
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                     56999999999999999875  3345588999999999999963    5899999 999999998743222


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      -....+......++.+.||..|..|++++.|+.|.+|.-.
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            2333344456789999999999999999999999999643

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=3.5e-23  Score=226.68  Aligned_cols=256  Identities=17%  Similarity=0.292  Sum_probs=222.0

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEE-EEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR  499 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~-lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~  499 (732)
                      +.++|++.++|+-.. ..+.+...+.+|.+-|.+ ++|-+ |+-.|++|+.|++|.+|......+..++.+|...|+|+.
T Consensus        30 s~sRd~t~~vw~~~~-~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls  108 (745)
T KOG0301|consen   30 SGSRDGTVKVWAKKG-KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS  108 (745)
T ss_pred             ecCCCCceeeeeccC-cccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence            567788899998633 344566778899999988 88875 555799999999999999999999999999999999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-C
Q 004737          500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-S  578 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~  578 (732)
                      ...++. +++||.|.+++||....   ....+.+|...|+++.+.|++  .+++|+.|.+|++|.-  ++++++|..| .
T Consensus       109 ~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD  180 (745)
T KOG0301|consen  109 IGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD  180 (745)
T ss_pred             cCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence            888877 99999999999998875   345689999999999999985  5669999999999986  7788888755 4


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                      .|..+++-++ ..|++++.||.|++|++ +++++.++.+|...|+++....++..|++++ |++++||+..     .|..
T Consensus       181 ~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q  253 (745)
T KOG0301|consen  181 CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQ  253 (745)
T ss_pred             heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEE
Confidence            5888998887 67889999999999999 7899999999999999999888888888888 9999999976     6777


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      .+......|+++.+-++|. |++|++||.||||....
T Consensus       254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            7777778999999999988 99999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.8e-22  Score=202.24  Aligned_cols=247  Identities=19%  Similarity=0.276  Sum_probs=203.7

Q ss_pred             CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-CCCcE
Q 004737          482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI  560 (732)
Q Consensus       482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~Dg~I  560 (732)
                      .+..+.+......|+++.|+++|.++++++.|.+++|||..+++. ++++..+.-.|..++|......++.+.. .|.+|
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            344556666788999999999999999999999999999998874 7777777778888999776556664433 47899


Q ss_pred             EEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737          561 RYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      ++.++.+.+.++.|.+|. .|..++.+|-+..+++++.|++|++||++..++...+.....  ..++|+|.|-++|++. 
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG  160 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence            999999999999998654 599999999999999999999999999998887776654333  4578999999999999 


Q ss_pred             CCeEEEEECCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCC---eeEEE
Q 004737          639 DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLA  711 (732)
Q Consensus       639 Dg~I~IWDl~t~~~~~~i~~~~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~---V~sla  711 (732)
                      .+.|++||++.-.+ .+..++.   ......+.+.|+|+|++++.++..+.+++.|.-+|..+ .+..+...   -...+
T Consensus       161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            44999999998644 2222322   34677899999999999999999999999999999877 44444332   25778


Q ss_pred             EeCCCCEEEEEECCCeEEEeC
Q 004737          712 ASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       712 ~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |+||+++|++|+.||+|.||+
T Consensus       240 ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             ECCCCcEEEEecCCCcEEEEE
Confidence            999999999999999999996

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=3.2e-21  Score=204.54  Aligned_cols=258  Identities=17%  Similarity=0.264  Sum_probs=212.8

Q ss_pred             CceeeeeecCCCceeEEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~-~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      ...+-+|+...+..++....++.+. ..|.|++|.++| -+++|..+|.|.||+..+.+..+....|.+.|.+++...+|
T Consensus       221 k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G  299 (626)
T KOG2106|consen  221 KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG  299 (626)
T ss_pred             CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc
Confidence            3456789999988888888888765 569999999998 57899999999999999888887777999999999999998


Q ss_pred             CeEEEEeCCCeEEEEecCCCC------------------------------ce---------eEEeecCCcceEEEEEcC
Q 004737          505 SRLATSSADRTVRVWDTENPD------------------------------YS---------LRTFTGHSTTVMSLDFHP  545 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~------------------------------~~---------~~~l~~h~~~V~sl~fsp  545 (732)
                      .+|- |+.|..|..||-.-.+                              ..         .....+|.+..+.++.+|
T Consensus       300 tllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp  378 (626)
T KOG2106|consen  300 TLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP  378 (626)
T ss_pred             cEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC
Confidence            7554 9999999999832100                              00         012346888999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004737          546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV  625 (732)
Q Consensus       546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sl  625 (732)
                      +. ..+++|+.|+.+++|+  ..+.+.......++.++.|+|.+ .+++|+..|...+.|.++...+.... ...+++++
T Consensus       379 s~-~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v  453 (626)
T KOG2106|consen  379 SK-NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVV  453 (626)
T ss_pred             Ch-hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEE
Confidence            95 5556999999999999  56777777777999999999998 99999999999999999965555444 48899999


Q ss_pred             EEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          626 CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       626 a~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      +|+|+|.+|+.++ |+.|+||.+..... .....-.++..+|+.+.|++|+.++.+-+.|-.|..|.
T Consensus       454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  454 RYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            9999999999999 99999999987543 33334445668999999999999998888888888884

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.1e-23  Score=232.79  Aligned_cols=275  Identities=19%  Similarity=0.362  Sum_probs=217.5

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----eEEEEecc---CCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCC
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~---h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      .+.+|...++-..|+.++. ..++||.+...    ++...+..   ....+.+|.|.. +.++|||++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            3566777788888888875 46777766532    22222211   123466788875 577999999999999999986


Q ss_pred             --CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCC-CCEEEEEEcCC
Q 004737          524 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIEN  599 (732)
Q Consensus       524 --~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~-g~~ll~~s~dg  599 (732)
                        ....+..|..|...|.+++|++...++|++|+.||.|++||++..+...++... ..|..+.|+|. +.+|+++...|
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence              233456788999999999999999999999999999999999988887777654 45899999996 45677777789


Q ss_pred             eEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          600 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       600 ~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      .+.+||++.. ++...+..|.++|.|+.|+|++.+|++|+ |+.|+|||..+... ..++++. ...++.++.|-|...+
T Consensus       200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY  277 (839)
T ss_pred             eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence            9999999975 67788889999999999999999999999 99999999987543 3333333 3678999999999876


Q ss_pred             EEEEE---cCCeEEEEECCCCeEE--EEccCCCCeeEEEEeC-CCCEEEEEECCCeEE
Q 004737          678 LLVIG---CYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK  729 (732)
Q Consensus       678 L~sgs---~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~sp-dg~~LaSgs~DG~I~  729 (732)
                      .++.+   .|-.|+|||++..-+-  ++..|...++.++|.. |...|.+++.||+|.
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            55443   3558999999877654  7789999999999964 456899999999763

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=1.5e-22  Score=211.47  Aligned_cols=249  Identities=17%  Similarity=0.202  Sum_probs=213.6

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      .+.+++||...|+.+.|+++...+++++.|..|+||.............|..+|+.+..+|.|.||++++.|++..+.|+
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~  332 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI  332 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence            46779999999999999999999999999999999999888888888899999999999999999999999999999999


Q ss_pred             CCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC
Q 004737          522 ENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       522 ~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      +++........ ...-.+++.+||||| .+|.+|..|+.|+|||+.....+..|.. .++|..+.|+.+|.++++++.|+
T Consensus       333 ~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~  411 (506)
T KOG0289|consen  333 SSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG  411 (506)
T ss_pred             cCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence            98775333222 233458999999996 7888999999999999999888877774 46699999999999999999999


Q ss_pred             eEEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          600 YISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      .|++||++..+...++.- ....|.+++|+..|.||+.++ |=.|++++-.+ +...++..+..|.+..+++.|.....+
T Consensus       412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq~  490 (506)
T KOG0289|consen  412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQY  490 (506)
T ss_pred             eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecccceE
Confidence            999999999877666653 234799999999999999986 44666666444 234677788888889999999999999


Q ss_pred             EEEEEcCCeEEEEEC
Q 004737          678 LLVIGCYETLELWNM  692 (732)
Q Consensus       678 L~sgs~dg~I~IwDl  692 (732)
                      +++++.|..++++.+
T Consensus       491 l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  491 LASTSMDAILRLYAL  505 (506)
T ss_pred             EeeccchhheEEeec
Confidence            999999999888864

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.5e-22  Score=200.74  Aligned_cols=283  Identities=20%  Similarity=0.335  Sum_probs=221.0

Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCe----------EEEE-----eccCCCceEEEEEcC-CCCeE
Q 004737          445 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL  507 (732)
Q Consensus       445 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~----------~~~~-----l~~h~~~V~~l~fsp-dg~~L  507 (732)
                      ..+.|.+.|+++.+.+ .|+|+++|+.||.|.|||++...          .+..     -.+|...|..+.|.| |...|
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            3457889999999988 78999999999999999987532          1111     136888999999999 67789


Q ss_pred             EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEE
Q 004737          508 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR  584 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~  584 (732)
                      .+++.|.+++|||..+-+. ...|. ..+.|++-+|+|-  ...++++|..|-.|++.|+..|.+.+.+..+ .+|.++.
T Consensus       118 tssSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ecccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence            9999999999999998653 33343 5567888888874  3578889999999999999999999999854 5699999


Q ss_pred             EeCCCCEE-EEEEcCCeEEEEECCCC-eEEEEEc--------------CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737          585 FQPRLGRI-LAAAIENYISILDVETQ-VCRLKLQ--------------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSI  647 (732)
Q Consensus       585 ~sp~g~~l-l~~s~dg~I~IwDl~t~-~~i~~l~--------------~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl  647 (732)
                      |+|...++ ++++.||.|++||++.. .|...+.              .|.+.|..+||..++.++++++ |..+++|+.
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            99998875 56788999999999865 3443332              4667899999999999999998 999999999


Q ss_pred             CCCCCceeEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737          648 GSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       648 ~t~~~~~~i~~~~~~~~----~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      .++.....-..-..+..    .+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+-..+.++
T Consensus       276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg  353 (397)
T KOG4283|consen  276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG  353 (397)
T ss_pred             ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence            88754221111111111    111 22 334444555556689999999999888 677898899999999999999999


Q ss_pred             ECCCeEEEe
Q 004737          723 SHDKCVKIW  731 (732)
Q Consensus       723 s~DG~I~IW  731 (732)
                      ..|+.|..|
T Consensus       354 ~~d~ni~~w  362 (397)
T KOG4283|consen  354 DMNGNIYMW  362 (397)
T ss_pred             ccCCccccc
Confidence            999999988

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.1e-23  Score=215.66  Aligned_cols=263  Identities=14%  Similarity=0.220  Sum_probs=222.7

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      .++.|..+++|+.....   +..++.+|.+.|..|++..  ..+++++.|++|+.|.++. ...+++.+ ...+..|.-+
T Consensus        84 SGs~DG~VkiWnlsqR~---~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~  156 (433)
T KOG0268|consen   84 SGSCDGEVKIWNLSQRE---CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHH  156 (433)
T ss_pred             ccccCceEEEEehhhhh---hhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccc
Confidence            56778889999987764   5677999999999999986  6889999999999999876 45666643 3457777777


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT  581 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~  581 (732)
                      ..+..++||+.+  |.|||..... ++..+.-..+.|.++.|+|....+|++|+.|+.|.+||++.+.++..+.......
T Consensus       157 ~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN  233 (433)
T KOG0268|consen  157 RKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN  233 (433)
T ss_pred             cccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence            778889998764  9999998644 6777777778899999999999999999999999999999999999888888899


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737          582 QMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      .++|+|..-.|+++..|..++.||++.. .++....+|.+.|.++.|+|.|.-|++|+ |.+|+||..+.+......++-
T Consensus       234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk  313 (433)
T KOG0268|consen  234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK  313 (433)
T ss_pred             ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence            9999998777888999999999999975 67778889999999999999999999999 999999999887443333221


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                        .-..|.++.|+.|.+++++|+.|+.|++|...-.+
T Consensus       314 --RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  314 --RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             --hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence              13468999999999999999999999999875433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=1e-22  Score=219.42  Aligned_cols=289  Identities=17%  Similarity=0.240  Sum_probs=230.4

Q ss_pred             ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC--eEEEEeCCCe
Q 004737          438 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRT  515 (732)
Q Consensus       438 ~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~--~Lasgs~Dg~  515 (732)
                      ++..+...++||++.|.||...|.|.+||+|+.||+|+||.+.+|.++.++. ..+.|.||+|+|.+.  .||++-.+ .
T Consensus       388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~  465 (733)
T KOG0650|consen  388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-C  465 (733)
T ss_pred             CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-c
Confidence            4445566789999999999999999999999999999999999999999886 445899999999755  34444332 3


Q ss_pred             EEEEecCCC------------------------------------CceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--
Q 004737          516 VRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--  557 (732)
Q Consensus       516 I~IWDl~s~------------------------------------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--  557 (732)
                      +.|.+..-+                                    ..-++....|...|..+.|+..|.++..++..+  
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~  545 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN  545 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence            444332211                                    111234455888999999999987776555433  


Q ss_pred             CcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737          558 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  636 (732)
Q Consensus       558 g~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Las  636 (732)
                      ..|.|.++........|. ..+.+.++.|+|...++++++ -..|+|||+.....+..+.....+|..++.+|.|..|+.
T Consensus       546 ~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  546 KSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             ceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence            468899998777666663 456799999999977776665 478999999988777777777889999999999999999


Q ss_pred             Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE------CCCC-eEE---EEccCCC
Q 004737          637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN------MTEN-KTL---TLSAHDK  705 (732)
Q Consensus       637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD------l~t~-~~~---~~~~h~~  705 (732)
                      ++ |+.+..||+.-..  +....+..|...+++++|++....+++++.|+++.||.      +-.+ .++   .+.+|..
T Consensus       625 gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~  702 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK  702 (733)
T ss_pred             ecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence            98 9999999998654  56778888999999999999999999999999988874      2222 222   5667866


Q ss_pred             C----eeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          706 L----VSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       706 ~----V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .    |..+.|+|.-.+|++++.||+|++|
T Consensus       703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ecccceEeecccCCCceEEecCCCceEEee
Confidence            5    9999999999999999999999999

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=5.4e-23  Score=206.59  Aligned_cols=288  Identities=13%  Similarity=0.218  Sum_probs=224.9

Q ss_pred             CCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 004737          401 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  480 (732)
Q Consensus       401 ~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~  480 (732)
                      ..++++|+.|..++.+....- ..+.....+..-++......++++-.|.+.|+++.|+|....|++|+.|++|++||..
T Consensus       124 G~lvATGsaD~SIKildverm-laks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs  202 (430)
T KOG0640|consen  124 GSLVATGSADASIKILDVERM-LAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS  202 (430)
T ss_pred             CcEEEccCCcceEEEeehhhh-hhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence            368899999998888732210 0000111111111222224578899999999999999999999999999999999987


Q ss_pred             CCeEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE--eecCCcceEEEEEcCCCCcEEEEEeC
Q 004737          481 SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHPSKEDLLCSCDN  556 (732)
Q Consensus       481 t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~--l~~h~~~V~sl~fspdg~~llaSgs~  556 (732)
                      .-...+.++  ....+|.++.|+|.|.+|+.|..--++++||+.+-++-+..  -..|++.|+++.+++.+ .+.++++.
T Consensus       203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSk  281 (430)
T KOG0640|consen  203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASK  281 (430)
T ss_pred             cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEecc
Confidence            643333222  34568999999999999999999999999999986643322  24689999999999997 56669999


Q ss_pred             CCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEe
Q 004737          557 NSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWN  628 (732)
Q Consensus       557 Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~s  628 (732)
                      ||.|++||--.++|+.++..   ...|.+..|..+++++++.+.|..+++|++.+++++..+.+-.     ..-+...|+
T Consensus       282 DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFN  361 (430)
T KOG0640|consen  282 DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFN  361 (430)
T ss_pred             CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhc
Confidence            99999999999999988862   3458999999999999999999999999999999998887531     122445688


Q ss_pred             CCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          629 TSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       629 pdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ....|++.-.  .+.+.-||.++....  -..-.+|.+.+..+.-+|.+.-+++++.|-.+++|--
T Consensus       362 htEdyVl~pDEas~slcsWdaRtadr~--~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  362 HTEDYVLFPDEASNSLCSWDARTADRV--ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             CccceEEccccccCceeeccccchhhh--hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            8888888877  668999999987532  2223468999999999999999999999999999954

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6e-23  Score=216.52  Aligned_cols=247  Identities=22%  Similarity=0.263  Sum_probs=212.4

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL  507 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L  507 (732)
                      .+.+|.+.+...+....   --.++|.|++-+|+|.||+.|+..+.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|
T Consensus        62 ~l~vw~i~k~~~~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i  138 (476)
T KOG0646|consen   62 LLHVWEILKKDQVVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI  138 (476)
T ss_pred             cccccccCchhhhhhhc---ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence            67788887765444222   235679999999999999999899999999999999999999999999999999999999


Q ss_pred             EEEeCCCeEEEEecCC--------CCceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737          508 ATSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQS  578 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s--------~~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~  578 (732)
                      +||+.||.|.+|.+..        ...++..+..|+-+|+++...+.+ +..+++++.|.++++||+..+..+..+..+.
T Consensus       139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~  218 (476)
T KOG0646|consen  139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS  218 (476)
T ss_pred             EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence            9999999999998642        224577899999999999988763 4577799999999999999999999999999


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----------------eEEEEEcCCCC--CEEEEEEeCCCCEEEEEe-C
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-D  639 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----------------~~i~~l~~h~~--~V~sla~spdg~~Lasgs-D  639 (732)
                      .+.+++++|.+..+++|+.+|.|.+.++...                ..+..+.+|.+  .|+|++++-||.+|++|+ |
T Consensus       219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d  298 (476)
T KOG0646|consen  219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED  298 (476)
T ss_pred             cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence            9999999999999999999999999887532                23556778888  999999999999999999 9


Q ss_pred             CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      |.|+|||+.+.   .+++++....++|+.+.+.|-.+..+.
T Consensus       299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             CCEEEEecchH---HHHHHHhhhccccceeEeeccccceec
Confidence            99999999887   777777767888999998766544443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.7e-23  Score=200.95  Aligned_cols=243  Identities=23%  Similarity=0.396  Sum_probs=199.9

Q ss_pred             ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC--ceeEEeecCCcceEEEEEc-CCCCcEEEEEeCCCcEEEEEC
Q 004737          489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI  565 (732)
Q Consensus       489 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fs-pdg~~llaSgs~Dg~I~iWDl  565 (732)
                      ..|.+.|.++...--|+.||||+.|++|+|+.+++..  ..+..+.+|.++|+.++|. |.-..+|++|+.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            4688999998888889999999999999999998765  5677999999999999995 555689999999999999999


Q ss_pred             CCCeeeeEEe---ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEeCC---C---
Q 004737          566 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G---  631 (732)
Q Consensus       566 ~t~~~i~~~~---~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~spd---g---  631 (732)
                      .++.-.+...   +...+++++|.|.  |-.|++++.||.|.|++.+..   ........|.-.|++++|.|-   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            8885443333   4567999999986  446889999999999988764   233345579999999999985   4   


Q ss_pred             --------CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 004737          632 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN---  695 (732)
Q Consensus       632 --------~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg----~~L~sgs~dg~I~IwDl~t~---  695 (732)
                              +.|++++ |..|+||++.+. ....-..+..|...|..++|.|.-    .+|++++.|++|.||.....   
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                    4578877 999999999886 324445588999999999999975    56999999999999976522   


Q ss_pred             -eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          696 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       696 -~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                       +...+......++.+.||..|++|+.++.|+.|.+|+
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence             1123445677899999999999999999999999995

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=2.1e-22  Score=212.25  Aligned_cols=252  Identities=19%  Similarity=0.334  Sum_probs=204.5

Q ss_pred             EEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCe----------EEEEeccCCCceEEEEEcCC-CCeEEEE
Q 004737          443 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPS-LSRLATS  510 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~----------~~~~l~~h~~~V~~l~fspd-g~~Lasg  510 (732)
                      +...--|.+.|+.+.+-|.. ..+|+.+..+.|.|||..+..          .-.++.+|...-+.++|++. .-+|+++
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~  196 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG  196 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence            34445699999999999954 567788889999999986432          22377899998899999984 4579999


Q ss_pred             eCCCeEEEEecCCCCc------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC--CeeeeEEe-ccCCee
Q 004737          511 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGAT  581 (732)
Q Consensus       511 s~Dg~I~IWDl~s~~~------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t--~~~i~~~~-~~~~i~  581 (732)
                      +.|++|++||+.....      +...+.+|...|..++|++....+|+++++|+.+.|||+++  .++..... +...+.
T Consensus       197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn  276 (422)
T KOG0264|consen  197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVN  276 (422)
T ss_pred             cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCcee
Confidence            9999999999975433      34578999999999999999999999999999999999994  44444444 457799


Q ss_pred             EEEEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCC-----
Q 004737          582 QMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK-----  652 (732)
Q Consensus       582 ~v~~sp~g~~-ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~-----  652 (732)
                      |++|+|.+.+ |++++.|++|.+||+++. .++..+.+|...|.+|.|+|+.. +|++++ |+.+.|||+..-..     
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9999997665 556777999999999985 67889999999999999999865 555555 99999999975322     


Q ss_pred             ------ceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 004737          653 ------GECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE  694 (732)
Q Consensus       653 ------~~~i~~~~~~~~~I~sl~fspdg~~L-~sgs~dg~I~IwDl~t  694 (732)
                            .+.+....+|...|..+.|+|...++ ++++.|+.+.||.+..
T Consensus       357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                  34566777899999999999999775 5567778999999864

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=2.9e-22  Score=212.86  Aligned_cols=240  Identities=15%  Similarity=0.231  Sum_probs=192.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe------------ccCCCceEEEEEcCCC-CeEEEEeCCC
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPSL-SRLATSSADR  514 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l------------~~h~~~V~~l~fspdg-~~Lasgs~Dg  514 (732)
                      .....|.++.|++.|..|++.+....++|+|-...+.....            ++|...++|.+|+|+. ..|+|++.||
T Consensus       212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg  291 (641)
T KOG0772|consen  212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG  291 (641)
T ss_pred             ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence            44557999999999999998888899999997765554433            4799999999999964 5799999999


Q ss_pred             eEEEEecCCCCceeEEee-----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEe--cc--CCeeEE
Q 004737          515 TVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--CQ--SGATQM  583 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~-----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i--~~~~--~~--~~i~~v  583 (732)
                      +++|||+.+.+.....++     +..-+++.++|+++++. ||+|..||.|.+|+......-  ..++  |.  ..|+++
T Consensus       292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi  370 (641)
T KOG0772|consen  292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI  370 (641)
T ss_pred             cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence            999999997665444433     23457899999999865 778888999999998543322  1111  22  369999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-------CCeEEEEECCCCCCc
Q 004737          584 RFQPRLGRILAAAIENYISILDVETQ-VCRLKLQG--HKNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKG  653 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~--h~~~V~sla~spdg~~Lasgs-------Dg~I~IWDl~t~~~~  653 (732)
                      .|+++|++|++-+.|+.+++||++.. +++....+  ...+-+.++|+|+.++|++|.       .|++.+||..+.   
T Consensus       371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---  447 (641)
T KOG0772|consen  371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---  447 (641)
T ss_pred             EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---
Confidence            99999999999999999999999975 55555444  234567899999999999986       247999998877   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      ..+..+......|..|.|+|.-+.|++++.||.++||=
T Consensus       448 d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  448 DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             eeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            66777777788999999999999999999999999873

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=2.7e-22  Score=211.39  Aligned_cols=242  Identities=20%  Similarity=0.317  Sum_probs=198.0

Q ss_pred             ccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCc---------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737          489 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  558 (732)
Q Consensus       489 ~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~---------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg  558 (732)
                      ..|.+.|+.+++.|. ..++|+.+..+.|.|||..+..-         +-..+.+|...-+.++|++.....+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            359999999999995 55777888899999999875321         12278899998899999999888899999999


Q ss_pred             cEEEEECCCCee-------eeEEe-ccCCeeEEEEeCCCC-EEEEEEcCCeEEEEECC--CCeEEEEEcCCCCCEEEEEE
Q 004737          559 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW  627 (732)
Q Consensus       559 ~I~iWDl~t~~~-------i~~~~-~~~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~--t~~~i~~l~~h~~~V~sla~  627 (732)
                      .|++||+.....       ...+. +...|..++|++... .|.+++.|+.+.|||++  +.++.....+|...|+|++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            999999975332       22333 345588899998654 46677888999999999  56677778889999999999


Q ss_pred             eCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCe--------
Q 004737          628 NTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENK--------  696 (732)
Q Consensus       628 spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~--------  696 (732)
                      +|.+ .+||+|+ |++|++||+++..  .+++.+..|...|..+.|+|.. ..|++++.|+.+.|||+..-.        
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            9965 5667777 9999999999875  5899999999999999999976 567788889999999985311        


Q ss_pred             -------EEEEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEeC
Q 004737          697 -------TLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  732 (732)
Q Consensus       697 -------~~~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWD  732 (732)
                             ++.-.+|...|..+.|+|... .|+++++|+.+.||+
T Consensus       359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence                   124558999999999999886 677889999999996

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=2.4e-20  Score=197.97  Aligned_cols=295  Identities=15%  Similarity=0.186  Sum_probs=229.4

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEE---eccC-CCceE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKST---LEEH-TQWIT  496 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~---l~~h-~~~V~  496 (732)
                      .++.+....+|+|.++....++.+   ....|..+.|.|.+. ++++++ .+.+.+|+.+.+...++   ++.+ ...|.
T Consensus       175 D~s~~h~lSVWdWqk~~~~~~vk~---sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl  250 (626)
T KOG2106|consen  175 DDSNPHMLSVWDWQKKAKLGPVKT---SNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVL  250 (626)
T ss_pred             cCCCccccchhhchhhhccCccee---ccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEE
Confidence            567788899999999987766554   456799999999555 555554 68999999998766544   3333 36799


Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------
Q 004737          497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------  569 (732)
Q Consensus       497 ~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-------  569 (732)
                      |++|.++|. ++||..+|.|.||+..+........ .|.+.|.+++...+| .++ +|+.|..|..||-.-.+       
T Consensus       251 ~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~G-tll-SGgKDRki~~Wd~~y~k~r~~elP  326 (626)
T KOG2106|consen  251 CVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDG-TLL-SGGKDRKIILWDDNYRKLRETELP  326 (626)
T ss_pred             EEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCc-cEe-ecCccceEEeccccccccccccCc
Confidence            999999886 7899999999999998766544444 999999999999886 455 69999999999832110       


Q ss_pred             ----eee------------------------------EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737          570 ----CAG------------------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  615 (732)
Q Consensus       570 ----~i~------------------------------~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l  615 (732)
                          .++                              .+.+......++..|+...+++++.|+.+++|+  ..+++.+.
T Consensus       327 e~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~  404 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK  404 (626)
T ss_pred             hhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE
Confidence                000                              111223355678888889999999999999999  44444443


Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          616 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       616 ~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      . -..++.|+.|+|.| .++.|. .|...+.|.++.   ..+..... ..+++++.|+|+|.+|++++.|+.|+||-+..
T Consensus       405 ~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  405 I-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             E-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence            3 45788999999999 888888 999999999884   34443333 88999999999999999999999999999865


Q ss_pred             CeE-E-EEc-cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          695 NKT-L-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       695 ~~~-~-~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.. . ... .|..+|+.+.|++|+++|.+-+-|-.|..|+
T Consensus       479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            443 3 222 3448999999999999999999999999994

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=219.40  Aligned_cols=276  Identities=15%  Similarity=0.232  Sum_probs=218.9

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      -+|+..-+.|+|.|+|++|++++.||.|++|+...- +...++..+...|.+++..  +.+|++|+.+++|.+|.+.++.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            378888999999999999999999999999987765 4445555577888888774  4599999999999999999876


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL  604 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw  604 (732)
                      . -..+...+-++.+++|+-+| .+++.|++|-.|++.+.........++ +..+|.++.|+|.+.+|++.+.||.|+||
T Consensus        88 ~-~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   88 E-DTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             c-cceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            3 34556667899999999886 456688889999999998887777776 45679999999999999999999999999


Q ss_pred             ECCCCeEEEEEcCC--------CCCEEEEEEeCCCCEEEE-EeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737          605 DVETQVCRLKLQGH--------KNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       605 Dl~t~~~i~~l~~h--------~~~V~sla~spdg~~Las-gsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg  675 (732)
                      |+.++.+...+.+-        ...+..++|+|++..|+. +.|+.|++|+..+......+. .+.+...+..+.|+|.|
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence            99998777665531        335677899999555555 559999999998874322222 22334459999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          676 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      .||++++.+|.|.|||+++-..   ......|.+++|.|+.+.|-....-|...+
T Consensus       245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence            9999999999999999998221   233467999999999876655555554443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=4.9e-22  Score=210.12  Aligned_cols=263  Identities=17%  Similarity=0.300  Sum_probs=221.0

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecC--CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEE
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDV  498 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~--H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l  498 (732)
                      .+..+.+++|++.....-.++..+..  ..+.|.+|.+.|||+.|++|++-.+|.|||+..-..  ...+....-.++++
T Consensus       436 TgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyAL  515 (705)
T KOG0639|consen  436 TGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL  515 (705)
T ss_pred             ecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhh
Confidence            34567789999877544445555543  456799999999999999999999999999975433  33444444567889


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737          499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS  578 (732)
Q Consensus       499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~  578 (732)
                      +.+||.+..++++.||.|.|||+.+.. .++.|.+|.+.+.||+++++|..+ .+|+-|.+||.||++++..+.......
T Consensus       516 a~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtkl-WTGGlDntvRcWDlregrqlqqhdF~S  593 (705)
T KOG0639|consen  516 AISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKL-WTGGLDNTVRCWDLREGRQLQQHDFSS  593 (705)
T ss_pred             hcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCcee-ecCCCccceeehhhhhhhhhhhhhhhh
Confidence            999999999999999999999999754 689999999999999999998555 599999999999999999888888888


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                      .|.++.++|.+.++++|-.++.+.|....... ...+.-|+.-|.++.|.+.|+++++.+ |+.+..|....+   ..+.
T Consensus       594 QIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiF  669 (705)
T KOG0639|consen  594 QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIF  669 (705)
T ss_pred             hheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---ccee
Confidence            99999999999999999999999998876543 445566999999999999999999988 999999998877   4444


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ..+ ....|.+|.++.+.++|++|+.|+...||.+
T Consensus       670 qsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  670 QSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            433 4678999999999999999999998888865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=2.6e-22  Score=217.95  Aligned_cols=277  Identities=23%  Similarity=0.323  Sum_probs=210.6

Q ss_pred             EEEEcC---CCCEEEEEECCCcEEEEEcCCCeEE------EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737          455 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       455 ~lafSp---dg~~Lasgs~Dg~I~VWd~~t~~~~------~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      ++.|++   ....||.+.+||.|.++|.+.....      ..+..|...|.++.|.|....|++++.|.++++||+....
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            367766   3347999999999999998754333      4456799999999999977789999999999999999876


Q ss_pred             ce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee--------------------eeEE-------e-c
Q 004737          526 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------------AGVF-------K-C  576 (732)
Q Consensus       526 ~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~--------------------i~~~-------~-~  576 (732)
                      .. .+.+.+|...|.+++|.|.+..+||+|+.||.|.|||++....                    ....       + .
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            42 1348999999999999999999999999999999999864320                    0000       0 1


Q ss_pred             cCCeeE---EEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEE--------cCC---CCCEEEEEEeCCCCEEEEEe-CC
Q 004737          577 QSGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-DE  640 (732)
Q Consensus       577 ~~~i~~---v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l--------~~h---~~~V~sla~spdg~~Lasgs-Dg  640 (732)
                      ...+..   +.+..|...|++++. |+.|+|||+++.......        ..|   ...+.+++.+..|.+|++.+ |+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            112333   556667788888877 999999999986544322        122   23577788888888877766 99


Q ss_pred             eEEEEECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCC
Q 004737          641 LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN  716 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~i~~~~~~~~--~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg  716 (732)
                      .|++|++..... ..+..+.++..  -...-..+|++.++++++.|...++|.+.+...-  .+.+|.-.|++++|.|..
T Consensus       294 sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  294 SIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             cEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            999999987543 23333333221  2233467999999999999999999999876644  677999999999998854


Q ss_pred             -CEEEEEECCCeEEEeC
Q 004737          717 -GMVASASHDKCVKIWK  732 (732)
Q Consensus       717 -~~LaSgs~DG~I~IWD  732 (732)
                       .-++||++|-.++||+
T Consensus       373 ~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  373 TTPVATCSDDFRVKIWR  389 (720)
T ss_pred             CCCceeeccCcceEEEe
Confidence             3578889999999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=3.4e-21  Score=211.07  Aligned_cols=284  Identities=21%  Similarity=0.287  Sum_probs=224.1

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEE--EEe---ccCCCceEEEEEcCCCCeEEEEeCCCeEE
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVK--STL---EEHTQWITDVRFSPSLSRLATSSADRTVR  517 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~--~~l---~~h~~~V~~l~fspdg~~Lasgs~Dg~I~  517 (732)
                      .+-||.+.|+++.|+|++..|++++.|+++.||..++.  --+  ..+   .+.....+..-|+|+++.+++-+..|-.+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            34599999999999999999999999999999976643  222  222   23345688999999999999999999999


Q ss_pred             EEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----e-eEEeccCCeeEEEEeCCCC
Q 004737          518 VWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----A-GVFKCQSGATQMRFQPRLG  590 (732)
Q Consensus       518 IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~----i-~~~~~~~~i~~v~~sp~g~  590 (732)
                      +|...+...  ....+.||.+.|..++|+|.|+++| +.+.|-+-|+|-.-..+.    + +.-.+....+|++|-+..-
T Consensus       342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~  420 (764)
T KOG1063|consen  342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL  420 (764)
T ss_pred             EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence            999433221  2345789999999999999987655 888899999987652111    1 1112334588899988656


Q ss_pred             EEEEEEcCCeEEEEECCC-------------------------------------------CeE----------------
Q 004737          591 RILAAAIENYISILDVET-------------------------------------------QVC----------------  611 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t-------------------------------------------~~~----------------  611 (732)
                      .+++|..+..+++|+...                                           +..                
T Consensus       421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L  500 (764)
T KOG1063|consen  421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL  500 (764)
T ss_pred             eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence            777888888889987420                                           000                


Q ss_pred             -----------------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCceEE
Q 004737          612 -----------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFHS  668 (732)
Q Consensus       612 -----------------i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~~~~~~~I~s  668 (732)
                                       +.++.+|...|++++.+|+++++++++ ..     .|++|+..+.   ..+..+..|.-.|+.
T Consensus       501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~  577 (764)
T KOG1063|consen  501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR  577 (764)
T ss_pred             cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence                             112237888999999999999999988 21     7999999877   556688899999999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEE-----EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          669 CVFHPTFPSLLVIGCYETLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       669 l~fspdg~~L~sgs~dg~I~IwDl~t~~~~-----~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++|+||+++|++++.|.++.+|...+....     ....|..-|+++.|+|++.+++|+|.|.+|+||.
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            999999999999999999999998655443     3568999999999999999999999999999994

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2e-21  Score=195.61  Aligned_cols=258  Identities=19%  Similarity=0.309  Sum_probs=198.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC----CCeEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEE
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVW  519 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~----t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IW  519 (732)
                      -.+|.+-|+|+.|.+.|+.+|+|+.|.+|+|||.+    +..+....+.|.+.|..|.|.+  -|..+|+++.|+++.||
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            34799999999999999999999999999999954    3456677889999999999965  48999999999999999


Q ss_pred             ecCCCC--------ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCC
Q 004737          520 DTENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  590 (732)
Q Consensus       520 Dl~s~~--------~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~  590 (732)
                      .-....        ....++......|+.+.|.|.. ...+++++.||+||||+.-..-.+........+..+.-     
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~-----  163 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID-----  163 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-----
Confidence            753111        1234566677899999999963 35678899999999998754332222221111111100     


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC---CCEEEEEeCC------eEEEEECCCCC-CceeEEEee
Q 004737          591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELS  660 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd---g~~LasgsDg------~I~IWDl~t~~-~~~~i~~~~  660 (732)
                                             ....+..+..|+.|+|.   ..+|++|+|.      .++||...... +...+.++.
T Consensus       164 -----------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~  220 (361)
T KOG2445|consen  164 -----------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP  220 (361)
T ss_pred             -----------------------CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence                                   11125566788888874   4688888865      89999987654 456677888


Q ss_pred             cCCCceEEEEEeCC----CCEEEEEEcCCeEEEEECCCCe--------------------EE-EEccCCCCeeEEEEeCC
Q 004737          661 CTGNKFHSCVFHPT----FPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTV  715 (732)
Q Consensus       661 ~~~~~I~sl~fspd----g~~L~sgs~dg~I~IwDl~t~~--------------------~~-~~~~h~~~V~sla~spd  715 (732)
                      .+..+|+.++|.|.    ...|++++.|| |+||.++...                    .+ .+..|.+.|+.+.|+-.
T Consensus       221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt  299 (361)
T KOG2445|consen  221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT  299 (361)
T ss_pred             CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence            99999999999996    35688899999 9999987311                    11 46689999999999999


Q ss_pred             CCEEEEEECCCeEEEeC
Q 004737          716 NGMVASASHDKCVKIWK  732 (732)
Q Consensus       716 g~~LaSgs~DG~I~IWD  732 (732)
                      |.+|++.+.||.|++|+
T Consensus       300 GtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  300 GTILSSTGDDGCVRLWK  316 (361)
T ss_pred             eeEEeecCCCceeeehh
Confidence            99999999999999996

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=4.2e-22  Score=217.56  Aligned_cols=243  Identities=21%  Similarity=0.349  Sum_probs=211.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC---CCCeEEEEeCCCeEEEEecCCCCc
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENPDY  526 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~Dg~I~IWDl~s~~~  526 (732)
                      ...|.|++.+|+|++||+|..-|+++||++...+....++.|...|.|+.|+.   ..++||+++.|..|+|||+...-.
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~  538 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD  538 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence            44699999999999999999999999999999999999999999999999986   357899999999999999998777


Q ss_pred             eeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEe------ccCCeeEEEEeCCCCEEEEEEcCC
Q 004737          527 SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       527 ~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~------~~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      .+.++.+|...|+++.|.-.| +.-+++|+.|..|.+--.........+.      .+..+..+++.|..+++++++.|.
T Consensus       539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr  618 (1080)
T KOG1408|consen  539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR  618 (1080)
T ss_pred             hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence            788999999999999998765 4456688889877654333211111111      234578899999999999999999


Q ss_pred             eEEEEECCCCeEEEEEcC---CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737          600 YISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~---h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg  675 (732)
                      .|+|||+++++.++.|++   |++....+...|.|.||++.+ |.++.++|+.++   +|+....+|...|+.+.|.+|-
T Consensus       619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nDC  695 (1080)
T KOG1408|consen  619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLNDC  695 (1080)
T ss_pred             ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecccc
Confidence            999999999999999986   667788899999999999987 999999999998   8999999999999999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCC
Q 004737          676 PSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~t~  695 (732)
                      ++|++++.||.|.||.+...
T Consensus       696 kHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  696 KHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hhheeecCCceEEEEECchh
Confidence            99999999999999998653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=1.5e-23  Score=230.27  Aligned_cols=254  Identities=21%  Similarity=0.373  Sum_probs=224.0

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  541 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl  541 (732)
                      +.+++....+-.++|||...      +..|...|.|+..-..++.+++|+.|..+.+|.+.... .+..+.+|..+|.++
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl   76 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESL   76 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceee
Confidence            34555556666788888653      44688889999887788999999999999999998766 466799999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN  620 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  620 (732)
                      .|++. +.+|++|+.+|+|++||++..+.++++.++ ..+..+.|+|-+.+++.++.|+.+.+||++...|...+.+|..
T Consensus        77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            99998 578889999999999999999988887754 5688999999999999999999999999999999999999999


Q ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-
Q 004737          621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-  698 (732)
Q Consensus       621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-  698 (732)
                      .|.++.|+|+|++++.++ |..++|||...+   +.+.++..|...+..+.|+|..-.++.|+.|++|++||+++...+ 
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence            999999999999999999 789999999888   788899999999999999999999999999999999999998888 


Q ss_pred             EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          699 TLSAHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       699 ~~~~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      ........|.+.+|++++..+++|..+.
T Consensus       233 s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  233 SGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccCCccCCceeeeecCCceeeecCchhh
Confidence            4455678899999999999988886543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-20  Score=210.63  Aligned_cols=305  Identities=17%  Similarity=0.260  Sum_probs=234.2

Q ss_pred             CCceeeeeecCCC-ce-eEEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          425 RDRVGRSAEVGKG-FT-FTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       425 ~d~~~r~wd~~~g-~~-~~~v~~l~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      .+..+.+|+...+ .+ ......++.-.+.|+++. +|..  +.++.|+.+|.+.||++++++.++++.++...|+++.=
T Consensus       132 ~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq  210 (910)
T KOG1539|consen  132 ISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ  210 (910)
T ss_pred             ccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEecc
Confidence            3456677887764 22 122233333333477764 4432  45889999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccC
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQS  578 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~  578 (732)
                      +|-=..+|.|..+|+|.|++++.++ .+..++-..+.|+.++|..||+.++++++..|.+.+||++..+.+....  +.+
T Consensus       211 sPaLDVVaiG~~~G~ViifNlK~dk-il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~  289 (910)
T KOG1539|consen  211 SPALDVVAIGLENGTVIIFNLKFDK-ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG  289 (910)
T ss_pred             CCcceEEEEeccCceEEEEEcccCc-EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC
Confidence            9988899999999999999999876 5777774459999999999999999999999999999999888776665  335


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECC--CC-----------------------------------------------
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVE--TQ-----------------------------------------------  609 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~--t~-----------------------------------------------  609 (732)
                      .+....|.+....+++++.|+.+++|=.+  .+                                               
T Consensus       290 sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~  369 (910)
T KOG1539|consen  290 SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQ  369 (910)
T ss_pred             CcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHH
Confidence            56666666666666666666655444211  00                                               


Q ss_pred             ---------------------------------------------------------------eE-EEEEcCCC------
Q 004737          610 ---------------------------------------------------------------VC-RLKLQGHK------  619 (732)
Q Consensus       610 ---------------------------------------------------------------~~-i~~l~~h~------  619 (732)
                                                                                     .. ...+ .+.      
T Consensus       370 ~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~  448 (910)
T KOG1539|consen  370 SQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDD  448 (910)
T ss_pred             hHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccC
Confidence                                                                           00 0000 111      


Q ss_pred             CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      ..+++++.++.|++.+.|. .|.|.+|++.++-....+..-..|..+|+.++...-++.+++++.+|.+.+||..+..++
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            4578889999999998888 899999999988332222223578999999999999999999999999999998765410


Q ss_pred             ------------------------------------------EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          699 ------------------------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       699 ------------------------------------------~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                                                                .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                                                      2347999999999999999999999999999998

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2e-20  Score=205.03  Aligned_cols=280  Identities=17%  Similarity=0.230  Sum_probs=228.9

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-eEEEEeccC-CCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      .++.+.--...|+|+||+.+.+.||.+-.||.|.||++... -....+.++ ...|..++|+ ++..|++.+.+|.|.-|
T Consensus        17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW   95 (691)
T ss_pred             EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence            34455566788999999999999999999999999999864 333455555 4679999999 45678888899999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEE
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      |+.+.+ ....+....+.|++++.+|.+ ..++.|++||.++++++..++......   ..+.+.++.|++++.+++.|+
T Consensus        96 Dl~~lk-~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs  173 (691)
T KOG2048|consen   96 DLHTLK-QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS  173 (691)
T ss_pred             ecccCc-eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence            999876 466777788999999999986 555577789999999998887765443   236799999999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEEc-------C-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737          597 IENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  667 (732)
Q Consensus       597 ~dg~I~IwDl~t~~~i~~l~-------~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~  667 (732)
                      .||.|++||+.++..+....       . ...-|+++.|-.++. |++|. .|+|.+||...+   ..+..+..|...|.
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl  249 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVL  249 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhccee
Confidence            99999999999987665211       1 233577888886664 55555 999999999888   77888889999999


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeE--E---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          668 SCVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~--~---~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      +++..+++.++++++.|+.|.-|...+++.  +   ....|...|.+++..++  .|++|+.|..+.|
T Consensus       250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            999999999999999999998888877643  1   44578899999999866  8999999998865

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.4e-23  Score=228.55  Aligned_cols=237  Identities=26%  Similarity=0.415  Sum_probs=214.4

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      +.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||++.
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            34668999999999977889999999999999999988888888999999999999999999999999999999999998


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .+ .++++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.++.+ ..+..+.|+|+|.+++.++.|..++
T Consensus       102 Ak-~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  102 AK-IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVK  179 (825)
T ss_pred             hh-hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceee
Confidence            66 5889999999999999999974 5589999999999999998899988854 3478889999999999999999999


Q ss_pred             EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737          603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg  681 (732)
                      |||+..++....|..|.+.|.++.|+|..-+++.|+ |++|++||+++.   ..+.........|.+..|.|++..+++|
T Consensus       180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             eecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeeecC
Confidence            999999999999999999999999999999999999 999999999876   6777777778899999999999977777


Q ss_pred             EcCC
Q 004737          682 GCYE  685 (732)
Q Consensus       682 s~dg  685 (732)
                      ....
T Consensus       257 ~q~s  260 (825)
T KOG0267|consen  257 EQIS  260 (825)
T ss_pred             chhh
Confidence            6543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=8.9e-21  Score=207.82  Aligned_cols=357  Identities=17%  Similarity=0.237  Sum_probs=258.8

Q ss_pred             ccccCCCcccEEEEecCCCCcccccCCcccccCCeeeccccCCce-eeccCCCC---CCCCCceeeeeecCCCceeEEEE
Q 004737          369 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNV-ESFLSPDD---ADPRDRVGRSAEVGKGFTFTEFQ  444 (732)
Q Consensus       369 l~~~~s~~~s~l~~s~~~~~~~~~~~~~l~~~~~~v~~gs~d~~v-~~~~s~~~---~~~~d~~~r~wd~~~g~~~~~v~  444 (732)
                      ...+++.++++|+|.++....+-+....+-.+.     |+..+-. ..|.....   ..++..-.++|.......+....
T Consensus       281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-----g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~  355 (764)
T KOG1063|consen  281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-----GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP  355 (764)
T ss_pred             hheecccCcceEEEecCCccceEEEEEEeeccc-----ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence            345677899999999987655444433332222     1110001 11211111   34455566888855555566677


Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      .+.||.+.|++++|.|.|+||++.+.|-+-+||-.-.    ...+.+-.-|...++|++|-+....|++|...+.+|+|+
T Consensus       356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~  435 (764)
T KOG1063|consen  356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE  435 (764)
T ss_pred             ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence            8899999999999999999999999999999986441    123333456888899999998767889998899999997


Q ss_pred             cCC-------------------------------------------CC--------------------------------
Q 004737          521 TEN-------------------------------------------PD--------------------------------  525 (732)
Q Consensus       521 l~s-------------------------------------------~~--------------------------------  525 (732)
                      ...                                           +.                                
T Consensus       436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw  515 (764)
T KOG1063|consen  436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW  515 (764)
T ss_pred             CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence            640                                           00                                


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCC
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      ..+..+.||...|++++.+|++ ++++++...     ..|++|+..+...+..+..+ -.|+.++|+|++++|++++.|.
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR  594 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR  594 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence            0122356799999999999996 677777643     46999999988777766644 4699999999999999999999


Q ss_pred             eEEEEECCCCe----EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE--EeecCCCceEEEEEe
Q 004737          600 YISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCTGNKFHSCVFH  672 (732)
Q Consensus       600 ~I~IwDl~t~~----~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~--~~~~~~~~I~sl~fs  672 (732)
                      ++.+|......    .....+.|..-|.++.|+|++.++++++ |.+|+||....... .++.  ....+...|+.++|.
T Consensus       595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~  673 (764)
T KOG1063|consen  595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYL  673 (764)
T ss_pred             eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEee
Confidence            99999875431    1233677999999999999999999999 99999999887621 2222  233467889999887


Q ss_pred             CC-----CCEEEEEEcCCeEEEEECC------CCeEE-------EEccCCCCeeEEEEeCCC----------CEEEEEEC
Q 004737          673 PT-----FPSLLVIGCYETLELWNMT------ENKTL-------TLSAHDKLVSSLAASTVN----------GMVASASH  724 (732)
Q Consensus       673 pd-----g~~L~sgs~dg~I~IwDl~------t~~~~-------~~~~h~~~V~sla~spdg----------~~LaSgs~  724 (732)
                      |-     +..+++|-..|.|.+|...      +....       ....|...|+.+.|.|..          ..|++|++
T Consensus       674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~  753 (764)
T KOG1063|consen  674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD  753 (764)
T ss_pred             ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence            73     2357788889999999865      11111       234678889999999752          25799999


Q ss_pred             CCeEEEeC
Q 004737          725 DKCVKIWK  732 (732)
Q Consensus       725 DG~I~IWD  732 (732)
                      |..++|++
T Consensus       754 D~~vri~n  761 (764)
T KOG1063|consen  754 DESVRIFN  761 (764)
T ss_pred             cceeEEee
Confidence            99999985

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1e-20  Score=213.14  Aligned_cols=241  Identities=17%  Similarity=0.264  Sum_probs=200.0

Q ss_pred             ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737          489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  568 (732)
Q Consensus       489 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~  568 (732)
                      ..|+...+.|+|.|+|++|++++.||.|++|+.......-.++..+...|.+++...   ..|++|+.+++|.+|.+..+
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCC
Confidence            468888999999999999999999999999998765322334444778888888763   36779999999999999887


Q ss_pred             eeeeEE-eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Q 004737          569 SCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS  646 (732)
Q Consensus       569 ~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWD  646 (732)
                      +.-..+ +..-++.+++|+-+|.++++|+.|-.|++.++.+......+.+|.++|.+|.|+|.+++|++.+ ||.|+|||
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            654222 2347789999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE--ccCCCCeeEEEEeCCCCE
Q 004737          647 IGSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL--SAHDKLVSSLAASTVNGM  718 (732)
Q Consensus       647 l~t~~~~~~i~~~~----~~-~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~--~~h~~~V~sla~spdg~~  718 (732)
                      +.++.....+..+.    .. ...+..++|+|++..+++.+.|+.|++|+..++... .+  ..+...++++.|+|.|+|
T Consensus       167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y  246 (933)
T KOG1274|consen  167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY  246 (933)
T ss_pred             cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence            99873322221111    11 344677899999999999999999999999998776 33  345556999999999999


Q ss_pred             EEEEECCCeEEEeC
Q 004737          719 VASASHDKCVKIWK  732 (732)
Q Consensus       719 LaSgs~DG~I~IWD  732 (732)
                      ||+++.||.|.|||
T Consensus       247 iAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  247 IAASTLDGQILVWN  260 (933)
T ss_pred             EeeeccCCcEEEEe
Confidence            99999999999997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4.6e-21  Score=193.04  Aligned_cols=245  Identities=20%  Similarity=0.301  Sum_probs=208.2

Q ss_pred             eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737          483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  562 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i  562 (732)
                      ..++.+.+|.+.|+.++-.....++.+++.|.+.+||.++++. ++..|.||.+.|++|.|++.+ .++++++.|++..|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-CLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHI  216 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-ceeeecccccceeeEEecccc-ceEEEccCCcchHH
Confidence            4566788999999999998877899999999999999999987 588999999999999999985 67779999999999


Q ss_pred             EEC------CC--------Ce--------------------------eeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          563 WSI------NN--------GS--------------------------CAGVFKC-QSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       563 WDl------~t--------~~--------------------------~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      |..      ..        ++                          ++..+.. ...+.+..|-..+..+++++.|.+-
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA  296 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA  296 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence            961      11        00                          1112222 2336677788889999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      .+||+++++.+..+.+|....+.++-+|..+++++.+ |.+.++||++..  ...+..+.+|...|+++.|..+.+ +++
T Consensus       297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVS  373 (481)
T KOG0300|consen  297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVS  373 (481)
T ss_pred             eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eee
Confidence            9999999999999999999999999999999999999 999999999843  367788999999999999999887 889


Q ss_pred             EEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          681 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       681 gs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++.|.+|+|||+++.+.. .......+++.++.+..+.+|+.--+...|++||
T Consensus       374 gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence            999999999999886543 4556678899999998888888888888899987

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.9e-20  Score=189.12  Aligned_cols=234  Identities=18%  Similarity=0.268  Sum_probs=190.2

Q ss_pred             CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      ..+.|..+.|+|.+..|+++++||++++||+....  ++....|..++.+++|.++  .-+++|+.||.|+.+|+.++..
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCC--ceEEEeccCceEEEEEecCCcc
Confidence            35789999999999999999999999999999763  4555568999999999975  4556899999999999999998


Q ss_pred             eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737          571 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       571 i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t  649 (732)
                      ...-.+..++.++.+.+..+.+++|+.|+.|++||.+.......+. ....|.++...  +..|++|+ |..|.+||+++
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence            8888888999999999999999999999999999999866665555 34478887764  55666655 99999999998


Q ss_pred             CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEccCCC---------CeeEEEEeCC
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDK---------LVSSLAASTV  715 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~-----~~~~~~~h~~---------~V~sla~spd  715 (732)
                      ....... .-......+.++++-|.+.-+++++-||.|.+=.++..     +...+..|..         +|++|+|+|-
T Consensus       165 ~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~  243 (323)
T KOG1036|consen  165 LDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI  243 (323)
T ss_pred             ccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence            7543211 22234567899999998888999999997776544433     2335555642         6999999999


Q ss_pred             CCEEEEEECCCeEEEeC
Q 004737          716 NGMVASASHDKCVKIWK  732 (732)
Q Consensus       716 g~~LaSgs~DG~I~IWD  732 (732)
                      .+.||||+.||.|.+||
T Consensus       244 ~~tfaTgGsDG~V~~Wd  260 (323)
T KOG1036|consen  244 HGTFATGGSDGIVNIWD  260 (323)
T ss_pred             cceEEecCCCceEEEcc
Confidence            99999999999999997

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.8e-20  Score=197.98  Aligned_cols=258  Identities=13%  Similarity=0.184  Sum_probs=203.5

Q ss_pred             EECC-CcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeC-CCeEEEEecCCCCceeEEeecCCcceEEEEEc
Q 004737          468 GGHD-KKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  544 (732)
Q Consensus       468 gs~D-g~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs  544 (732)
                      ++.| .++.+||+.+|....++++.. ..-..+..- .+.|++++.. ...|.+|.+....... .+.--.++|.++.-+
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS   90 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence            3344 459999999999988887642 111112111 2356666654 4589999998654322 334456789999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 004737          545 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK  614 (732)
Q Consensus       545 pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~---------t~~~i~~  614 (732)
                      |+|. +++.|+..|.|++|.+.+|..+..+.. -..|+|+.|+.|+.+|++++.||.|.+|++.         +-+++..
T Consensus        91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~  169 (476)
T KOG0646|consen   91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI  169 (476)
T ss_pred             CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence            9974 554666789999999999999988764 3569999999999999999999999999764         3467888


Q ss_pred             EcCCCCCEEEEEEeCC--CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          615 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       615 l~~h~~~V~sla~spd--g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      +..|.-+|+.+...+.  ..+|++++ |.++++||+..+   ..+..+. ....+.+++.+|.++.+++|+.+|.|.+.+
T Consensus       170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence            9999999999988765  35788888 999999999988   4554443 467899999999999999999999999987


Q ss_pred             CCCCe-----------------EEEEccCCC--CeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          692 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       692 l~t~~-----------------~~~~~~h~~--~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +....                 ...+.+|.+  .|+|++++-||..|++|+.||.|+|||
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            74332                 115668888  999999999999999999999999997

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=9.2e-21  Score=200.40  Aligned_cols=282  Identities=18%  Similarity=0.217  Sum_probs=211.8

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEEcCC--CeEEEEeccCCCceEEEEEcCCC
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~-Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      .+++||+..-....++-...... .|.+++|+....+ +++.+.|..|++|.-..  ++....-....+.-.|++.....
T Consensus        13 ~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S   91 (673)
T KOG4378|consen   13 KTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS   91 (673)
T ss_pred             ceEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence            34666665544333332222222 3899999876632 33445788999996432  22222211122234555555556


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeE
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQ  582 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~  582 (732)
                      .|+++|+..+.|+|||+.. +.+.+.+++|...|+++.++..+ .+|++++..|.|.|..+.++.....|.+..+  +.-
T Consensus        92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence            8999999999999999994 55788999999999999999774 6777999999999999999988888886633  568


Q ss_pred             EEEeCCCCEEE-EEEcCCeEEEEECCCCeEEEEE-cCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737          583 MRFQPRLGRIL-AAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       583 v~~sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l-~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~  658 (732)
                      +.|++..++++ +++.+|.|.+||+....++..+ +.|..+...|||+|... +|++.+ |.+|.+||++......++  
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l--  247 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL--  247 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--
Confidence            99999877655 5677899999999988777654 45999999999999765 555666 999999999875333333  


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCC
Q 004737          659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN  716 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg  716 (732)
                        ....+...++|.++|.+|++|...|.|+.||++..+..  .+.+|...|++++|-+.-
T Consensus       248 --~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  248 --TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             --eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence              24678999999999999999999999999999876643  667999999999998764

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=2.7e-20  Score=189.00  Aligned_cols=285  Identities=19%  Similarity=0.335  Sum_probs=219.2

Q ss_pred             EEecCCCCCeEEEEEcC----C-CCEEEEEECCCcEEEEEcCCC---eEEEEe--ccCCCceEEEEEcCC----CCeEEE
Q 004737          444 QLIPASTSKVESCHFSP----D-GKLLATGGHDKKAVLWCTESF---TVKSTL--EEHTQWITDVRFSPS----LSRLAT  509 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSp----d-g~~Lasgs~Dg~I~VWd~~t~---~~~~~l--~~h~~~V~~l~fspd----g~~Las  509 (732)
                      +....|+.+|..++|.+    + -..+|+++. ..|.+|....-   ..+..+  ..|......++|+-|    ..++|.
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34568999999999985    2 235666654 58888876532   223333  247778888999764    347899


Q ss_pred             EeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccCCeeEEEE
Q 004737          510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRF  585 (732)
Q Consensus       510 gs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~~i~~v~~  585 (732)
                      ++.-|.|+|.|+.++. ....+.+|...|+.|.|+|+...++++++.|..|++|++.+..|+..+.    +...|.++.|
T Consensus       111 ~G~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             ecceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            9999999999999876 4788999999999999999999999999999999999999999999886    3456999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCeE------E-------------------E---EEcCCCCCEEEEEEeCCCCEEEEE
Q 004737          586 QPRLGRILAAAIENYISILDVETQVC------R-------------------L---KLQGHKNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       586 sp~g~~ll~~s~dg~I~IwDl~t~~~------i-------------------~---~l~~h~~~V~sla~spdg~~Lasg  637 (732)
                      +.++.+|++++.|..|++|++...+.      .                   .   +-.-|...|-|+.|-  |+++++-
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence            99999999999999999999983211      1                   0   111356666667664  5788887


Q ss_pred             e-CCeEEEEECCC-C----------CCceeEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCeEE---EE
Q 004737          638 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL  700 (732)
Q Consensus       638 s-Dg~I~IWDl~t-~----------~~~~~i~~~~~~~~~I~sl--~fspdg~~L~sgs~dg~I~IwDl~t~~~~---~~  700 (732)
                      + ++.|..|.... .          .....+.++......|+-+  +|.+-.+.|+.|...|.|++||++..+..   ++
T Consensus       268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl  347 (385)
T KOG1034|consen  268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL  347 (385)
T ss_pred             ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence            7 99999998721 1          1112344444444455544  56677899999999999999999887763   22


Q ss_pred             c--cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          701 S--AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       701 ~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .  .....|...+|+.|+.+|+..++|+.|.-||
T Consensus       348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence            2  3356799999999999999999999999886

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.86  E-value=2.8e-20  Score=186.20  Aligned_cols=207  Identities=19%  Similarity=0.326  Sum_probs=174.9

Q ss_pred             cCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC------cee--------EEeecCCcceEEEEEcCCCCcEEEEE
Q 004737          490 EHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSC  554 (732)
Q Consensus       490 ~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~------~~~--------~~l~~h~~~V~sl~fspdg~~llaSg  554 (732)
                      .|.+.|..+...+ .|+|+++|+.||.|.|||+++..      ...        ....+|.-.|..+.|.|-+.-++.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            5889999999987 68999999999999999998543      001        12246888999999999888999999


Q ss_pred             eCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC
Q 004737          555 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG  631 (732)
Q Consensus       555 s~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg  631 (732)
                      +.|.+++|||.++-+....|+.++.|..-+++|-.   -.+++|..+-.|++.|+.++.+...+.+|...|.++.|+|..
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~  200 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS  200 (397)
T ss_pred             cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence            99999999999999999999999999999988843   356667778899999999999999999999999999999988


Q ss_pred             CEEE-EEe-CCeEEEEECCCCC------------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          632 EYLA-SVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       632 ~~La-sgs-Dg~I~IWDl~t~~------------~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                      ++++ +++ ||.|++||++...            ....+..-..|.+.|..++|+.++.++++++.|..+++|+..+|+
T Consensus       201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            7655 556 9999999998642            112222344577889999999999999999999999999998775

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=5.8e-20  Score=193.50  Aligned_cols=292  Identities=18%  Similarity=0.263  Sum_probs=211.8

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEEcCC----CeEEEEeccCCCceEEEEEcC-CCCeEEEEe
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSS  511 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs  511 (732)
                      .+.....++-|.+.|+|++|+|..  +++|+|..-|.|-+||+.+    ...+..+..|..+|.++.|+| +-..+++.+
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence            344566778899999999999954  5788999999999999952    234566788999999999999 456899999


Q ss_pred             CCCeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-ccCCeeEEEEeCC
Q 004737          512 ADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPR  588 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~-~~~~i~~v~~sp~  588 (732)
                      +||+|++-|++...... ..+......+..+.|+.+...++ .++.=|...+||++++.. ...+. +...|..++++|.
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence            99999999999754321 12222345567788887765555 555556999999998654 33333 3457999999997


Q ss_pred             CCE-EEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC-CCceeEEEeec
Q 004737          589 LGR-ILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHELSC  661 (732)
Q Consensus       589 g~~-ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~-~~~~~i~~~~~  661 (732)
                      ..+ +++++.|++.+|||++.-.    ++.....|...|.+.+|+|.+-.|++.+ |..|+|||..-- .......++..
T Consensus       334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H  413 (498)
T KOG4328|consen  334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH  413 (498)
T ss_pred             CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence            655 6778889999999998632    2344456999999999999876677777 999999998411 11122222221


Q ss_pred             ---CCCc--eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC-CCeeE-EEEeCCCCEEEEE-ECCCeEEEe
Q 004737          662 ---TGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNGMVASA-SHDKCVKIW  731 (732)
Q Consensus       662 ---~~~~--I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~-~~V~s-la~spdg~~LaSg-s~DG~I~IW  731 (732)
                         ++..  .....|.|+..+++++-.-..|-|||-+.++.+ .+.... ..|.+ ..|+|-+..+++| +..|.|+||
T Consensus       414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence               1122  345689999999999999899999999888865 433322 24444 4789988845554 567888888

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=2.5e-20  Score=196.27  Aligned_cols=269  Identities=16%  Similarity=0.238  Sum_probs=214.7

Q ss_pred             CeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcC
Q 004737          402 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE  480 (732)
Q Consensus       402 ~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~  480 (732)
                      .++-++++|.++..|                .++ |..-..++.+.-...+|.+++|.|+|. .+++++.....+.||+.
T Consensus       226 plllvaG~d~~lrif----------------qvD-Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  226 PLLLVAGLDGTLRIF----------------QVD-GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             ceEEEecCCCcEEEE----------------Eec-CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence            455566666655555                332 222235666777788999999999999 89999999999999999


Q ss_pred             CCeEEE--EeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC
Q 004737          481 SFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  557 (732)
Q Consensus       481 t~~~~~--~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D  557 (732)
                      +.+...  .+.++. ..+.....++++++|+..+..|.|.+....++.. +..++ -.+.|..++|+.+++.++++|+ +
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~l~~~~~-~  365 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKELLASGG-T  365 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcEEEEEcC-C
Confidence            876543  334444 4577788899999999999999999999988664 44444 4678999999999877775554 8


Q ss_pred             CcEEEEECCCCeeeeEEeccCCe--eEEEEeCCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCCEEEEEEeC
Q 004737          558 SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       558 g~I~iWDl~t~~~i~~~~~~~~i--~~v~~sp~g~~ll~~s~dg~I~IwDl~t------~~~i~~l~~h~~~V~sla~sp  629 (732)
                      |.|++||++...|++.+...+.+  +.++.++++.++++|+..|.|.|||.++      .+++..+..-...|+++.|++
T Consensus       366 GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~  445 (514)
T KOG2055|consen  366 GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH  445 (514)
T ss_pred             ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence            89999999999999999877765  5677789999999999999999999764      356666666778899999999


Q ss_pred             CCCEEEEEe---CCeEEEEECCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          630 SGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       630 dg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~---~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      |..+|+.++   ++.+++-.+.+.   ..+..+..   .-+.++|++|+|.+.++++|...|.|.+|.+.
T Consensus       446 d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  446 DAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             chhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            999999988   668999988776   33433333   33568999999999999999999999999874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.2e-21  Score=213.56  Aligned_cols=226  Identities=19%  Similarity=0.355  Sum_probs=190.9

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      .....+.+||+.+...-..+..|..|+..|++++|++- -.+|++|+.||+|++||++..+...++.+....|.+|.|+|
T Consensus       107 s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  107 STNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             cCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence            34567889999885444556688999999999999984 56889999999999999999999999999999999999999


Q ss_pred             -CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEeccCC
Q 004737          503 -SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSG  579 (732)
Q Consensus       503 -dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~~~~~  579 (732)
                       .+.+|+++...|.+.+||++....+...+..|.++|.|+.|+|+ ..+||+|+.|+.|+|||..+.+  .+.++....+
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiap  265 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAP  265 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEeecce
Confidence             57889999999999999999998888999999999999999996 6788899999999999998654  4455666678


Q ss_pred             eeEEEEeCCCCEEEEEEc---CCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCC
Q 004737          580 ATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~---dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      +.++.|-|...+.++.+.   |-.|+|||++.. -+..++..|...++.++|.. |...+.+++ |++|..-.+++.
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            999999998776555443   679999999876 55677888999999999976 455777777 888776666554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.86  E-value=4.6e-20  Score=200.33  Aligned_cols=270  Identities=19%  Similarity=0.278  Sum_probs=213.7

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      .|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+.||+|+.|+.|.||+-.-..   ..-
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG---~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG---ILK   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc---eee
Confidence            699999999999888775 4589999999999999999999999999999999999999999999999865432   223


Q ss_pred             ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737          532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC  611 (732)
Q Consensus       532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~  611 (732)
                      ..|.+.|.|+.|+|-. ..+++|+- ...-+|...... +...+....+.+++|..||.+++.|-.+|+|.+-+-...+.
T Consensus        90 YSH~D~IQCMsFNP~~-h~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPIT-HQLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eccCCeeeEeecCchH-HHhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence            4599999999999984 56668874 346788876433 33344446788999999999999999999999986543322


Q ss_pred             EEE--EcCCCCCEEEEEEeCCC-----CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004737          612 RLK--LQGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  683 (732)
Q Consensus       612 i~~--l~~h~~~V~sla~spdg-----~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~  683 (732)
                      +..  -.+..++|.+|+|+|..     ..+++.. ..++.+|.+..    ..+..-...+....|+.+.++|.++++|++
T Consensus       167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGs  242 (1081)
T KOG1538|consen  167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGS  242 (1081)
T ss_pred             eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccC
Confidence            222  22467899999999963     3566666 66777777754    334333344556678899999999999999


Q ss_pred             CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          684 YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       684 dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |+.+.+|.-+.-.+-++...+.+|+.++..|++.+++.|+.||+|-.|+
T Consensus       243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            9999999654433336667888999999999999999999999997654

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.1e-18  Score=191.44  Aligned_cols=258  Identities=14%  Similarity=0.173  Sum_probs=200.5

Q ss_pred             CceeeeeecCCCceeEEEEEecCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H-~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      +..+.+|+...++...  .++++| .+.|.+++|++ +..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.+
T Consensus        46 ~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~  122 (691)
T KOG2048|consen   46 DGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN  122 (691)
T ss_pred             CCcEEEEccCCCceee--EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCcc
Confidence            4456666666655433  344444 46799999994 5578888889999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----ccC
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQS  578 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-----~~~  578 (732)
                      ..++.||.||.+..++...+..... .+...++.|.+++|+|++.. +++|+.||.|++||..++..+....     ...
T Consensus       123 ~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k  201 (691)
T KOG2048|consen  123 TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK  201 (691)
T ss_pred             ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccCceEEEEEcCCCceEEEeeeccccccc
Confidence            9999999999888888877654333 34455689999999999744 5599999999999999988777332     112


Q ss_pred             ----CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-
Q 004737          579 ----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-  652 (732)
Q Consensus       579 ----~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-  652 (732)
                          -|.++.|-. .+.|++|...|.|.+||...+..+..+..|...|.+++..+++.++++++ |+.|..|...+... 
T Consensus       202 ~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~  280 (691)
T KOG2048|consen  202 REPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE  280 (691)
T ss_pred             CCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence                155666664 47899999999999999999999999999999999999999988888888 99888888776543 


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      .........|...+.+++..++  .+++|+.|..+.+-
T Consensus       281 wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  281 WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC  316 (691)
T ss_pred             eeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence            1222334456677777777666  56666666555443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.1e-17  Score=180.33  Aligned_cols=300  Identities=28%  Similarity=0.437  Sum_probs=238.6

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      ...+..+.+|+...  .......+..|...|.+++|+|+++++++++. |+.+++|++..++.+..+.+|...|.+++|+
T Consensus       130 ~~~d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  207 (466)
T COG2319         130 SSLDGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS  207 (466)
T ss_pred             CCCCccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence            34467889998876  23456778999999999999999999998885 9999999999988999999999999999999


Q ss_pred             CCCC-eEEEEeCCCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEE-ecc
Q 004737          502 PSLS-RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQ  577 (732)
Q Consensus       502 pdg~-~Lasgs~Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~-~~~  577 (732)
                      |++. ++++++.|+.|++||...+.. .. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+.
T Consensus       208 ~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  284 (466)
T COG2319         208 PDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHS  284 (466)
T ss_pred             CCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCC
Confidence            9988 555558999999998885543 44 688888775 44899997 5666899999999999987664 4333 334


Q ss_pred             CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEE-e-CCeEEEEECCCCCCc
Q 004737          578 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKG  653 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasg-s-Dg~I~IWDl~t~~~~  653 (732)
                      ..+.++.|.|++..+++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ . |+.+.+|++....  
T Consensus       285 ~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--  362 (466)
T COG2319         285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--  362 (466)
T ss_pred             ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--
Confidence            678999999988888888889889999999887666665  788889999994332556655 4 8889999998763  


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCeEEEEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~s-gs~dg~I~IwDl~t~~~~~~~~h~-~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                       ....... ...+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|
T Consensus       363 -~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (466)
T COG2319         363 -PLKTLEG-HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW  439 (466)
T ss_pred             -eeEEecC-CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEE
Confidence             2222222 22288888988 543444 577889999999998888555444 889999999999999999999999999


Q ss_pred             C
Q 004737          732 K  732 (732)
Q Consensus       732 D  732 (732)
                      +
T Consensus       440 ~  440 (466)
T COG2319         440 D  440 (466)
T ss_pred             e
Confidence            6

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=1.2e-19  Score=190.60  Aligned_cols=243  Identities=19%  Similarity=0.361  Sum_probs=190.5

Q ss_pred             EEEEEcC-------CCCEEEEEECCCcEEEEEcCCCe---EEE------------------EeccCCCceEEEEEcCC-C
Q 004737          454 ESCHFSP-------DGKLLATGGHDKKAVLWCTESFT---VKS------------------TLEEHTQWITDVRFSPS-L  504 (732)
Q Consensus       454 ~~lafSp-------dg~~Lasgs~Dg~I~VWd~~t~~---~~~------------------~l~~h~~~V~~l~fspd-g  504 (732)
                      .|++|..       -|+|+|.|+.|..|.|||+.=..   +..                  .-.+|++.|.+++|+.. .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            4666643       36799999999999999975211   111                  12369999999999875 5


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCCeeEE
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQM  583 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~i~~v  583 (732)
                      +.||+|+.|.+|++||+.+++ +..++..|...|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..+
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv  335 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV  335 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence            689999999999999999987 57888889999999999999999999999999999999984 3444566777899999


Q ss_pred             EEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737          584 RFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       584 ~~sp~g~~-ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      +|.+.... +++++.||.|+-+|+|.. +++.+++.|..+|.+|+++..-. ++++++ |+.|++|++..... ..++..
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~  414 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEH  414 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccc
Confidence            99997654 667778899999999986 99999999999999999998654 566666 99999999976432 222222


Q ss_pred             ecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCeEE
Q 004737          660 SCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      ...-+...|+++.|+-.+ +++|+..+.++|||+.+...+
T Consensus       415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            222344677788887755 555566667999999887654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=1.4e-17  Score=179.58  Aligned_cols=284  Identities=30%  Similarity=0.503  Sum_probs=228.5

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-EEEEeccCC-CceEEEEE-cCCCC-eEEEEeC-CCeEEEE
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHT-QWITDVRF-SPSLS-RLATSSA-DRTVRVW  519 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-~~~~l~~h~-~~V~~l~f-spdg~-~Lasgs~-Dg~I~IW  519 (732)
                      .+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            466899999999999999999999999999999999886 666666644 37777777 78877 5555445 9999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEE-E
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA-A  596 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~-s  596 (732)
                      |+.........+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+.. ...+.+++|+|++..++++ +
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  218 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS  218 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence            99973445788899999999999999986 5556664 99999999998788877774 5679999999988744444 8


Q ss_pred             cCCeEEEEECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          597 IENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       597 ~dg~I~IwDl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      .|+.|.+||...+.... .+.+|...+ ...|++++.++++++ |+.+++|++.....  .+..+..|...+.++.|.|+
T Consensus       219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~  295 (466)
T COG2319         219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD  295 (466)
T ss_pred             CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence            89999999999887777 688888775 448999998888777 99999999987643  23333567889999999998


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE-EE--ccCCCCeeEEEEeCCCCEEEEE-ECCCeEEEeC
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL-TL--SAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK  732 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~-~~--~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWD  732 (732)
                      +..+++++.|+.+.+||....... ..  ..|...|..+.|.+++..++.+ ..|+.+.+|+
T Consensus       296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  357 (466)
T COG2319         296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD  357 (466)
T ss_pred             CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence            888888888888999999888766 33  3788789999994332455555 6888898885

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-19  Score=190.96  Aligned_cols=248  Identities=17%  Similarity=0.243  Sum_probs=199.8

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~-~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      .-+.|+.+++|.-...  ..++..++.-. +.-+|++......|+++|+..+.|+|||+....+.+.+++|...|+++.|
T Consensus        52 s~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~Y  129 (673)
T KOG4378|consen   52 SMAGDKVMRIKEKDGK--TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDY  129 (673)
T ss_pred             ecCCceeEEEecccCC--CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEe
Confidence            4567888898875544  22333332211 24456666556689999999999999999977777888999999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--cc
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQ  577 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~  577 (732)
                      +....|||+++..|.|.|..+.++.. ...|. +....|.-+.|++..+.+|.+++++|.|.+||+.....+..+.  +.
T Consensus       130 N~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs  208 (673)
T KOG4378|consen  130 NNTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS  208 (673)
T ss_pred             cCCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence            99999999999999999999998764 33333 2345677999999999999999999999999998777665554  44


Q ss_pred             CCeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737          578 SGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC  655 (732)
Q Consensus       578 ~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~  655 (732)
                      .+...++|+|... .|++.+.|..|++||++..+....+. ...+...++|.++|.+|++|. .|.|..||++..+  .+
T Consensus       209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~P  285 (673)
T KOG4378|consen  209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--AP  285 (673)
T ss_pred             CCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CC
Confidence            5678899999754 46678899999999999877666665 567899999999999999999 9999999999764  67


Q ss_pred             EEEeecCCCceEEEEEeCCC
Q 004737          656 IHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       656 i~~~~~~~~~I~sl~fspdg  675 (732)
                      +..+..|...|++++|-+.-
T Consensus       286 v~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  286 VAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ceEeeecccceeEEEeeecc
Confidence            77888899999999998765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=186.54  Aligned_cols=243  Identities=18%  Similarity=0.363  Sum_probs=185.8

Q ss_pred             cCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEEcC----------------CCeEEEEeccCCCceEEEEEcCC-CCeE
Q 004737          447 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL  507 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~----------------t~~~~~~l~~h~~~V~~l~fspd-g~~L  507 (732)
                      ..|.+.|+.+..++-+  .+.|+-+..|.|.|||+.                ..+.++++.+|...=+.++|+|- ...|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4577777777777644  466777888999999974                23567888899999999999993 3358


Q ss_pred             EEEeCCCeEEEEecCCCCcee--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEeccCCeeE
Q 004737          508 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQ  582 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~---~~i~~~~~~~~i~~  582 (732)
                      ++|..-+.|++|...++...+  +.+.+|+..|..++|+|..+.+|++|+.||+|+|||++.+   .++.+-.+.+.|..
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            888888899999998876543  4577899999999999999999999999999999999987   56666556778999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCC---CeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCcee--
Q 004737          583 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGEC--  655 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t---~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~--  655 (732)
                      +.|+.....|++|+.||+++|||++.   +.++..++-|+.+|++|.|+|.. ..|++++ |..|.|||+......+.  
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~  387 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID  387 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence            99999988899999999999999985   47788999999999999999964 3444444 99999999865422110  


Q ss_pred             -------------EEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 004737          656 -------------IHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW  690 (732)
Q Consensus       656 -------------i~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~Iw  690 (732)
                                   +..+..-...+..+.|++.-. ++++.+.|| +.||
T Consensus       388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence                         111111234466678888654 344445555 4444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=8.6e-21  Score=218.62  Aligned_cols=274  Identities=20%  Similarity=0.304  Sum_probs=215.5

Q ss_pred             EEEEcCCCC-EEEEE----------ECCCcEEEEEcCCC------eEEEEeccCCCceEEEEEcCCCCe----EEEEeCC
Q 004737          455 SCHFSPDGK-LLATG----------GHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD  513 (732)
Q Consensus       455 ~lafSpdg~-~Lasg----------s~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~l~fspdg~~----Lasgs~D  513 (732)
                      .++|+|++. ++|+|          +.+.++.||.+...      +.+..+. -....++++|.+.+..    ||.|..|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            478999887 55554          33556677755422      2222232 3456889999987665    8899999


Q ss_pred             CeEEEEecCCC-----CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEEEE
Q 004737          514 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF  585 (732)
Q Consensus       514 g~I~IWDl~s~-----~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~  585 (732)
                      |.|.+||...-     ...+..+..|.+.|..++|++...+++++|+.||.|.|||+.+-+.-....   ..+.|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            99999998752     123456788999999999999999999999999999999998755444332   3466999999


Q ss_pred             eCCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEeCCCC-EEEEEe--CC--eEEEEECCCCCCceeEE
Q 004737          586 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH  657 (732)
Q Consensus       586 sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~--~V~sla~spdg~-~Lasgs--Dg--~I~IWDl~t~~~~~~i~  657 (732)
                      +..-.+|+ +++.+|.+.|||++..+.+..+..+..  .+..|+|+|+.. .|++++  |+  .|.+||++...  ..++
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k  247 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK  247 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence            98766555 566678999999999988888776544  577899999863 444555  33  89999998764  5667


Q ss_pred             EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEe
Q 004737          658 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW  731 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IW  731 (732)
                      ++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+....+++..+.|+|... .++.++-||.|-|+
T Consensus       248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence            778999999999999977 88999999999999999999999 6777788999999999876 88888999999987

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.84  E-value=1.9e-19  Score=194.65  Aligned_cols=131  Identities=22%  Similarity=0.344  Sum_probs=106.8

Q ss_pred             cCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeE------EEEeccCCCceEEEEEcCCCCe
Q 004737          434 VGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV------KSTLEEHTQWITDVRFSPSLSR  506 (732)
Q Consensus       434 ~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~------~~~l~~h~~~V~~l~fspdg~~  506 (732)
                      .+.|..-+.+..+.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-.      ...+.+..-.|.|+.|+|...-
T Consensus        63 ~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg  142 (1012)
T KOG1445|consen   63 TAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG  142 (1012)
T ss_pred             cccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc
Confidence            345555667888999999999999999 555899999999999999884321      1223334557899999997666


Q ss_pred             EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                      |+..+..|+++|||+.+.+ .+..+.+|.+.|.+..|+.|| .++++++.|..|+|||.+
T Consensus       143 il~s~a~g~v~i~D~stqk-~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPR  200 (1012)
T KOG1445|consen  143 ILASGAHGSVYITDISTQK-TAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPR  200 (1012)
T ss_pred             eEEeccCceEEEEEcccCc-eeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCc
Confidence            6666688999999999876 688899999999999999997 577788899999999875

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=4.3e-19  Score=179.79  Aligned_cols=269  Identities=17%  Similarity=0.278  Sum_probs=205.5

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCC------------eEEEEec-cCCCceEEEEEc-------CCCCeEEEEe
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSS  511 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~------------~~~~~l~-~h~~~V~~l~fs-------pdg~~Lasgs  511 (732)
                      -...+.|+|||..|++-+.|..+.+|++..-            +....++ .....|.+.+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            3567999999999999999999999987521            1111111 133568888885       5678999999


Q ss_pred             CCCeEEEEecCCCCceeEEee--cCCc---ceEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeee---EEec-----c
Q 004737          512 ADRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAG---VFKC-----Q  577 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~~~~~~l~--~h~~---~V~sl~fspdg~~llaSgs~Dg~I~iWDl-~t~~~i~---~~~~-----~  577 (732)
                      .|.-|++||.-+++. ...+.  .|.+   ...+++|+|||..++  ++....|++||+ +.|.-..   ++..     .
T Consensus       131 r~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~  207 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK  207 (406)
T ss_pred             ccCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence            999999999998874 22332  2333   346899999998777  445788999999 5554222   1111     2


Q ss_pred             CCeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCce
Q 004737          578 SGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGE  654 (732)
Q Consensus       578 ~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~  654 (732)
                      +-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|.  |..|..||++...  .
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~  285 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--D  285 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--c
Confidence            4478899999765 677888888999999999999999999999999999999999999998  8899999998753  3


Q ss_pred             eEEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737          655 CIHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       655 ~i~~~~~~~~---~I~sl~fspdg~~L~sgs~dg~I~IwDl~t-~~~~-~~~~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                      .+..+..|..   .-.-+...|++++|++|+.+|.|++||+++ +..+ .+..|...|+.++++|--.+++|++..
T Consensus       286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            4444443332   223345678999999999999999999988 6644 677899999999999998888887643

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.83  E-value=2.2e-19  Score=195.35  Aligned_cols=250  Identities=16%  Similarity=0.237  Sum_probs=188.9

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE--eccCCCceEEEEEcCC-CCeEEEEeCCCeEEEE
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW  519 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IW  519 (732)
                      +..+..|.+.|..+.|-|....|++++.|.++++||+++.+++..  +.+|.+.|.+++|.++ ...|++|+.||.|.||
T Consensus        93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW  172 (720)
T ss_pred             hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence            345678999999999999666899999999999999999888766  8899999999999994 5689999999999999


Q ss_pred             ecCCCCc--------------------------eeEEeecCCcceEE---EEEcCCCCcEEEEEeC-CCcEEEEECCCCe
Q 004737          520 DTENPDY--------------------------SLRTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGS  569 (732)
Q Consensus       520 Dl~s~~~--------------------------~~~~l~~h~~~V~s---l~fspdg~~llaSgs~-Dg~I~iWDl~t~~  569 (732)
                      |++....                          .++....+...|.+   +.+..|. ..|++++. |+.|+|||+++..
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccc
Confidence            9874320                          01112234444444   4444554 45556665 9999999998765


Q ss_pred             eeeEEe---------c---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCC--EEEEEEeCCCCE
Q 004737          570 CAGVFK---------C---QSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQ--VHSVCWNTSGEY  633 (732)
Q Consensus       570 ~i~~~~---------~---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~--V~sla~spdg~~  633 (732)
                      +.....         +   .-++.++..+..|.++++.+.|+.|++|++.+.  .++..+.++...  ...-+.+||+.+
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~  331 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS  331 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence            443221         1   234778888888999999999999999999864  344444443322  122356899999


Q ss_pred             EEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 004737          634 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~  695 (732)
                      |++++ |...++|.+.+..  .....+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus       332 l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  332 LLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EeccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            99999 9999999998764  3455667888999999998854 33777788889999999654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=7.8e-19  Score=182.85  Aligned_cols=278  Identities=17%  Similarity=0.258  Sum_probs=209.3

Q ss_pred             CCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC---------eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          450 TSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       450 ~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~---------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      ..+|..+.|.++.. .||||+.|..|+||-++..         +....+..|...|++|.|+|+|..||+|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            45799999999776 9999999999999977532         2345677899999999999999999999999999999


Q ss_pred             ecC--------C-----C--CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEE
Q 004737          520 DTE--------N-----P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQM  583 (732)
Q Consensus       520 Dl~--------s-----~--~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v  583 (732)
                      ...        +     .  ....+.+.+|...|..++|+|++ .++++++.|..+++||+..|.....+..+. -+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            765        2     1  12345678899999999999996 566699999999999999999998887554 48889


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------C-----------CC----CCEEEEEEeCCCCEEEEEe--
Q 004737          584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------G-----------HK----NQVHSVCWNTSGEYLASVS--  638 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--------~-----------h~----~~V~sla~spdg~~Lasgs--  638 (732)
                      +|.|.+.++++-+.|...+++++.....+....        .           |.    .-...++|+|+|.+|++.+  
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~  251 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL  251 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence            999999999998888877777665433222111        0           11    1235678999999988754  


Q ss_pred             ---CCe-----EEEEECCCCCCceeEEEeecCCCceEEEEEeC-----------------CCCEEEEEEcCCeEEEEECC
Q 004737          639 ---DEL-----VRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       639 ---Dg~-----I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp-----------------dg~~L~sgs~dg~I~IwDl~  693 (732)
                         ++.     .++|+-...  ..++..+.+...+...+.|+|                 -.+.+++....+.|+|||..
T Consensus       252 ~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq  329 (434)
T KOG1009|consen  252 FKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ  329 (434)
T ss_pred             eeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence               333     345544322  234444555555555544443                 13446667777799999999


Q ss_pred             CCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          694 ENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       694 t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      +..++  .-.-|-..|++++|++||.+|+..+.||.+.+
T Consensus       330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            98877  34468899999999999999999999997643

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=1.7e-19  Score=190.10  Aligned_cols=256  Identities=16%  Similarity=0.247  Sum_probs=200.8

Q ss_pred             EEcCCCeEEEEeccCCCceEEEEEcCCC--CeEEEEeCCCeEEEEecCC---CCceeEEeecCCcceEEEEEcCCCCcEE
Q 004737          477 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLL  551 (732)
Q Consensus       477 Wd~~t~~~~~~l~~h~~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~s---~~~~~~~l~~h~~~V~sl~fspdg~~ll  551 (732)
                      +|+.+......++.+.+.|++++|+|..  +++|+|..-|.|-+||+.+   ....+..+..|..+|.+|.|+|.+...+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            3444445555667788999999999954  5888999999999999952   2223567888999999999999988888


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEE
Q 004737          552 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW  627 (732)
Q Consensus       552 aSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~  627 (732)
                      ++.+.||+|++-|++.......+..   ......+.|+.+...++++..-|.+.+||+++... ...+.-|...|.+|++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            8999999999999987654433332   23366778888888889998888999999998754 5566678889999999


Q ss_pred             eCCC-CEEEEEe-CCeEEEEECCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEE
Q 004737          628 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL  700 (732)
Q Consensus       628 spdg-~~Lasgs-Dg~I~IWDl~t~~~~~-~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~----t~~~~~~  700 (732)
                      +|-. .+|++++ |++++|||++...... ++.....|...|.++.|||++-.|++.+.|..|+|||..    .......
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            9975 4677778 9999999998754433 344455688999999999999889999999999999984    3333334


Q ss_pred             ccCCC------CeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          701 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       701 ~~h~~------~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ..|..      ......|.|+..+|++|-.-..|-|+|
T Consensus       411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            44432      234568999999999999888888875

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.6e-20  Score=212.66  Aligned_cols=243  Identities=19%  Similarity=0.353  Sum_probs=202.1

Q ss_pred             CCeEEEEEcCCCCE----EEEEECCCcEEEEEcCCC------eEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEE
Q 004737          451 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW  519 (732)
Q Consensus       451 ~~V~~lafSpdg~~----Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IW  519 (732)
                      .+.++++|.+.|..    ||.|..||.|.+||....      ..+.++..|++.|..+.|++.. ++||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45788999987765    888999999999998652      3456677899999999999965 499999999999999


Q ss_pred             ecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC---eeEEEEeCCCCE-EEE
Q 004737          520 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA  594 (732)
Q Consensus       520 Dl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~---i~~v~~sp~g~~-ll~  594 (732)
                      |+.+.+.+... .....+.|.+++|+..-..+|++++.+|.+.|||++..+.+..+.....   +..+.|+|+... +++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            99986543332 2224578999999988889999999999999999998887776665444   778999998654 555


Q ss_pred             EEcCC---eEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE
Q 004737          595 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS  668 (732)
Q Consensus       595 ~s~dg---~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~s  668 (732)
                      ++.|.   .|.+||++.. ..+..+.+|...|.++.|++.+ ++|++++ |+.|.+|+..++   +.+.++...++++..
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd  301 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD  301 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence            55543   7999999865 5677788999999999999976 7778777 999999999998   888899888999999


Q ss_pred             EEEeCCCC-EEEEEEcCCeEEEEECCCCe
Q 004737          669 CVFHPTFP-SLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       669 l~fspdg~-~L~sgs~dg~I~IwDl~t~~  696 (732)
                      +.|+|... .+++.+-||.|.||.+.+..
T Consensus       302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  302 VQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999886 67788889999999987655

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=7.2e-19  Score=177.76  Aligned_cols=242  Identities=18%  Similarity=0.271  Sum_probs=182.6

Q ss_pred             EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc----eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737          487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  562 (732)
Q Consensus       487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~----~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i  562 (732)
                      .+++|.+.|++++|+.||++|+|++.|++|+||+++.-..    +++.-. ..+..+.+.|.||-..+++++-....+++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            4679999999999999999999999999999999986321    111111 12356889999999889989988889999


Q ss_pred             EECCCCe---eeeEE----------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737          563 WSINNGS---CAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       563 WDl~t~~---~i~~~----------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp  629 (732)
                      |.+...+   ....+          ++.-.+..+-....+.+|++++.|..|.+||++ |+.+..+......-+..+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            9875322   11111          112235566667778899999999999999999 888888777666777889999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------e
Q 004737          630 SGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------K  696 (732)
Q Consensus       630 dg~~Lasgs-Dg~I~IWDl~t~~-----~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~-------~  696 (732)
                      +|++|++++ .-.|+||.+--.+     ....+..+.+|...|..++|+++...+++++.||+++|||+.-.       +
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk  318 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK  318 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence            999999998 7789999874322     12356678899999999999999999999999999999998422       1


Q ss_pred             EE-E----EccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          697 TL-T----LSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       697 ~~-~----~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .+ .    +..-.+....++.+|.+..|+.+. ...+++|
T Consensus       319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~  357 (420)
T KOG2096|consen  319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF  357 (420)
T ss_pred             HhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence            12 1    112233445899999999887653 3345544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=6.5e-19  Score=181.68  Aligned_cols=241  Identities=22%  Similarity=0.337  Sum_probs=190.7

Q ss_pred             ccCCCceEEEEEcCCC--CeEEEEeCCCeEEEEecCC---------------CCceeEEeecCCcceEEEEEcCCCCcEE
Q 004737          489 EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL  551 (732)
Q Consensus       489 ~~h~~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~s---------------~~~~~~~l~~h~~~V~sl~fspdg~~ll  551 (732)
                      ..|.+.|..++-++-+  .+.++-+..|.|.|||+..               ...++.++.+|...=+.|+|+|-..-.+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577888888877644  4556667789999999862               1235678889999999999999665667


Q ss_pred             EEEeCCCcEEEEECCCCeeee----EEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 004737          552 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH  623 (732)
Q Consensus       552 aSgs~Dg~I~iWDl~t~~~i~----~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~  623 (732)
                      ++|+.-+.|++|...++.-..    ...+...|..++|+|.. +.|++++.||.|+|||++.+   .++.+ +.|.+.|+
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence            788888899999988765432    12245668899999964 56778889999999999987   44444 77999999


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE----
Q 004737          624 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT----  697 (732)
Q Consensus       624 sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~----  697 (732)
                      .|.|+.+-.+|++|+ ||+++|||++..+...++..++.|..+|+++.|+|.. ..|++++.|..|.+||+.-..-    
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~  386 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI  386 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence            999999888999999 8999999999988888999999999999999999965 5688888999999999853221    


Q ss_pred             -------------EEEccC--CCCeeEEEEeCCC-CEEEEEECCCeEEEe
Q 004737          698 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW  731 (732)
Q Consensus       698 -------------~~~~~h--~~~V~sla~spdg-~~LaSgs~DG~I~IW  731 (732)
                                   ..++-|  ...|..+.|++.- .+|++.+.|| +.||
T Consensus       387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence                         023344  3568889999864 5899999999 5555

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.3e-18  Score=182.96  Aligned_cols=270  Identities=14%  Similarity=0.296  Sum_probs=199.0

Q ss_pred             EEEcCCCCEEEEEECCC-----cEEEEEcCCCeEEEEeccCC-----CceEEEEEcC-------CCCeEEEEeCCCeEEE
Q 004737          456 CHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHT-----QWITDVRFSP-------SLSRLATSSADRTVRV  518 (732)
Q Consensus       456 lafSpdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~~h~-----~~V~~l~fsp-------dg~~Lasgs~Dg~I~I  518 (732)
                      +.+-|...+|+++-.+.     .|+||+-..-    .+..|.     ....|++|..       .|+|+|.|+.|..|.|
T Consensus       131 ~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~----nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI  206 (463)
T KOG0270|consen  131 EQVKPSDNLILCARNEDDVSYLEVYVYNEEEE----NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI  206 (463)
T ss_pred             ceeccCCcEEEEeeccCCceEEEEEEEcCCCc----ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence            44556556666664332     3455553331    111222     2346777743       3689999999999999


Q ss_pred             EecCCCC--ceeE------------------EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-c
Q 004737          519 WDTENPD--YSLR------------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-Q  577 (732)
Q Consensus       519 WDl~s~~--~~~~------------------~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~  577 (732)
                      ||++--.  .+..                  .-.+|++.|.++.|+..-+++|++|+.|.+|++||+.++++...+.+ .
T Consensus       207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~  286 (463)
T KOG0270|consen  207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG  286 (463)
T ss_pred             eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence            9987221  1111                  12369999999999998899999999999999999999999999984 5


Q ss_pred             CCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCc
Q 004737          578 SGATQMRFQPRL-GRILAAAIENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG  653 (732)
Q Consensus       578 ~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i-~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~  653 (732)
                      ..|.++.|+|.. ..+++|+.|++|.++|.+..... ..++ ..+.|-.++|.|.....+.++  ||+|+-+|+|...  
T Consensus       287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--  363 (463)
T KOG0270|consen  287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--  363 (463)
T ss_pred             CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC--
Confidence            669999999964 56788999999999999953222 2222 456899999999876544444  9999999999865  


Q ss_pred             eeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCC---CCeeEEEEeCCCC-EEEEEECCCeE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHD---KLVSSLAASTVNG-MVASASHDKCV  728 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~~~~~h~---~~V~sla~spdg~-~LaSgs~DG~I  728 (732)
                      +++.++..|...|.+++++..- ..+++++.++.|++|++..........|.   +...|+++.|+-- +++.|+..+.+
T Consensus       364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL  443 (463)
T ss_pred             CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence            7899999999999999999876 45778888999999998765554333332   2356677777654 67788888899


Q ss_pred             EEeC
Q 004737          729 KIWK  732 (732)
Q Consensus       729 ~IWD  732 (732)
                      +|||
T Consensus       444 ~vwd  447 (463)
T KOG0270|consen  444 RVWD  447 (463)
T ss_pred             EEee
Confidence            9997

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.81  E-value=7.9e-17  Score=174.70  Aligned_cols=285  Identities=12%  Similarity=0.124  Sum_probs=194.5

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEcC-CCeE--EEEeccCCCceEEEE
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SFTV--KSTLEEHTQWITDVR  499 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs-~Dg~I~VWd~~-t~~~--~~~l~~h~~~V~~l~  499 (732)
                      ..+..+++|+..+...+..+..+.. .+....++++||+++|++++ .++.|.+|++. +++.  +.... ..+....++
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~   86 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIS   86 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEE
Confidence            3456778888864444555666653 45677899999999987765 57899999986 3432  22222 334567899


Q ss_pred             EcCCCCeEEEEeC-CCeEEEEecCCCCce---eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee---
Q 004737          500 FSPSLSRLATSSA-DRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---  572 (732)
Q Consensus       500 fspdg~~Lasgs~-Dg~I~IWDl~s~~~~---~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~---  572 (732)
                      |+|++++|++++. ++.|.+|++++....   +..+. +.....+++|+|+++.++++...++.|.+||+.+...+.   
T Consensus        87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            9999999888875 889999999753321   22222 334567789999998888888888999999997633221   


Q ss_pred             ----EEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEcCC------CCCEEEEEEeCCCCEEEEE
Q 004737          573 ----VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------KNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       573 ----~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t--~--~~i~~l~~h------~~~V~sla~spdg~~Lasg  637 (732)
                          ..........+.|+|++++++++.. ++.|.+||++.  +  +.+..+..+      ......+.|+|++++++++
T Consensus       166 ~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        166 PAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             CCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence                1122345778999999999988877 89999999973  2  333333221      1233468899999999988


Q ss_pred             e--CCeEEEEECCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCeEEE--EccCCCCeeE
Q 004737          638 S--DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT--ENKTLT--LSAHDKLVSS  709 (732)
Q Consensus       638 s--Dg~I~IWDl~t~~-~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~--t~~~~~--~~~h~~~V~s  709 (732)
                      .  ++.|.+|++.... ..+.+..... ......+.|+|+|++|+++.. +++|.+|++.  ++....  .........+
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~  324 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYAVGQGPMW  324 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccccCCCceE
Confidence            6  6799999996542 1223333322 234567899999999998886 7799999874  444331  1122344555


Q ss_pred             EEE
Q 004737          710 LAA  712 (732)
Q Consensus       710 la~  712 (732)
                      ++|
T Consensus       325 ~~~  327 (330)
T PRK11028        325 VSV  327 (330)
T ss_pred             EEE
Confidence            555

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.6e-18  Score=187.31  Aligned_cols=242  Identities=19%  Similarity=0.263  Sum_probs=197.8

Q ss_pred             EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737          485 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       485 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD  564 (732)
                      -..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.....+++.+.+..+.|.+
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            345689999999999999999999999999999999999875 55554 4568999999998765444444444444443


Q ss_pred             CCCC--------------------------------------eeeeEEeccCCeeEEEEeCCCCEEEEEEcC---CeEEE
Q 004737          565 INNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISI  603 (732)
Q Consensus       565 l~t~--------------------------------------~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d---g~I~I  603 (732)
                      ..-|                                      .....+.+...|..+.|+..|.+|+++..+   ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            2211                                      012345566778999999999999998775   47999


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  683 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~  683 (732)
                      +++.......-|....+.|.++.|+|...+|++++-..|+|||+...   ..++.+......|..++++|.|..|++++.
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence            99988776666666778899999999999999999999999999875   555666666778999999999999999999


Q ss_pred             CCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          684 YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       684 dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      |+.+..||+.-....  ++..|...|++++|++.-.++++|+.||.+.||
T Consensus       628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            999999999765333  788999999999999999999999999999986

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.7e-18  Score=172.54  Aligned_cols=233  Identities=15%  Similarity=0.240  Sum_probs=180.8

Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004737          495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  574 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~  574 (732)
                      ..|+.|++.|.+||+|+.||.|.|||+.+.. ..+.+.+|..+|.+++|+++|..++ +++.|..|.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~Ll-tsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLL-TSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEee-eecCCceeEEEeccCCCceeEE
Confidence            7899999999999999999999999999866 5788999999999999999986555 9999999999999999999999


Q ss_pred             eccCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCC----CEEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 004737          575 KCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKN----QVHSVCWNTSGEYLASVS-DELVRVWSIG  648 (732)
Q Consensus       575 ~~~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~~~i~~l~~h~~----~V~sla~spdg~~Lasgs-Dg~I~IWDl~  648 (732)
                      ....+|..+.|+|.... +++.-.+..-.+.++...+...--....+    .-.+..|.+.|+||++|. .|.+.++|..
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            99999999999996544 44444444444555543322111111111    123346889999999999 9999999998


Q ss_pred             CCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEc-cC-------CCCeeEEEEeCC
Q 004737          649 SGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLS-AH-------DKLVSSLAASTV  715 (732)
Q Consensus       649 t~~~~~~i~~~~~~~-~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~----~~~-~h-------~~~V~sla~spd  715 (732)
                      +.   +++..++... ..|..+.|+..|++|++-+.|..|+.|+++.-...    ... .|       ...=.+++|+.+
T Consensus       184 t~---e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d  260 (405)
T KOG1273|consen  184 TL---ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD  260 (405)
T ss_pred             hh---eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence            87   7888777666 77899999999999999999999999998642211    000 11       223357889999


Q ss_pred             CCEEEEEEC-CCeEEEeC
Q 004737          716 NGMVASASH-DKCVKIWK  732 (732)
Q Consensus       716 g~~LaSgs~-DG~I~IWD  732 (732)
                      |.|++.++. -..++||+
T Consensus       261 geYv~a~s~~aHaLYIWE  278 (405)
T KOG1273|consen  261 GEYVCAGSARAHALYIWE  278 (405)
T ss_pred             ccEEEeccccceeEEEEe
Confidence            999988773 45788995

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=5.6e-17  Score=175.87  Aligned_cols=265  Identities=10%  Similarity=0.183  Sum_probs=183.5

Q ss_pred             EEEECCCcEEEEEcCC-Ce--EEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCC-CCceeEEeecCCcceEE
Q 004737          466 ATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVMS  540 (732)
Q Consensus       466 asgs~Dg~I~VWd~~t-~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s-~~~~~~~l~~h~~~V~s  540 (732)
                      ++...++.|.+||+.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|+++. +................
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            3446789999999964 33  445554 345678899999999987765 478999999973 22221111123345678


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCC-Ce---eeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEE--
Q 004737          541 LDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL--  613 (732)
Q Consensus       541 l~fspdg~~llaSgs~Dg~I~iWDl~t-~~---~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~--  613 (732)
                      ++|+|+++.++++...++.|.+|++.+ +.   .+..+........++++|+++++++++. ++.|.+||+.+...+.  
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            999999988887777789999999974 22   2233333345678899999999877665 5899999998632221  


Q ss_pred             -----EEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeecC------CCceEEEEEeCCCCEEE
Q 004737          614 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       614 -----~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~-~~~~~i~~~~~~------~~~I~sl~fspdg~~L~  679 (732)
                           ... .......++|+|++++++++.  ++.|.+|++... ...+.+..+...      ......+.|+|++++++
T Consensus       165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly  243 (330)
T PRK11028        165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY  243 (330)
T ss_pred             CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence                 111 233467899999999998887  789999999742 122334333221      11234688999999999


Q ss_pred             EEEc-CCeEEEEECCCCe-EEEEccC---CCCeeEEEEeCCCCEEEEEEC-CCeEEEeC
Q 004737          680 VIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK  732 (732)
Q Consensus       680 sgs~-dg~I~IwDl~t~~-~~~~~~h---~~~V~sla~spdg~~LaSgs~-DG~I~IWD  732 (732)
                      ++.. ++.|.+|++.... ...+..+   ......+.|+|++++|+++.. +++|.||+
T Consensus       244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            9865 5699999986432 2222222   235678999999999998775 88999984

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=1.3e-19  Score=201.43  Aligned_cols=274  Identities=18%  Similarity=0.291  Sum_probs=217.6

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      .++.+.+|.+.|+|+.|...|.++++|+.|..|+||..+++.+...+.+|.+.|++++.+.+..++++++.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EEeccCCeeEEEEeCCCCEEEEEE
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      .++. ++..+.+|++.|++|+|+|--     +.+.||++++||.+-.-.+.     .+....-+..+.|...+..+++++
T Consensus       262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            9866 688999999999999999973     77889999999988211111     112223466677777788899999


Q ss_pred             cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          597 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       597 ~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      .|+.-..|......      .+...+.-+.++.+- .+.+++- +-.+++|++.++   ...+.+.+|...++.+.++|-
T Consensus       336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCC
Confidence            99888877664321      122222223333232 3344444 779999999988   677788889999999999997


Q ss_pred             CCEE-EEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          675 FPSL-LVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       675 g~~L-~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ...+ ..++.||...|||+-.+..+  ...+ ...+...+||+||..++....-|.+.|.
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence            7554 56788999999999998877  2334 4567788999999988887777777764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.7e-18  Score=186.79  Aligned_cols=256  Identities=19%  Similarity=0.282  Sum_probs=198.3

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--------CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT  515 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--------t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~  515 (732)
                      .++..|.+.|+.++|.+-...|++|+.|++|.+|++.        ..+.+.+|++|.++|.|+++.+++.++++|+.||+
T Consensus       288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT  367 (577)
T ss_pred             eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence            3788999999999999999999999999999999983        24677899999999999999999999999999999


Q ss_pred             EEEEecCCC---------CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEE
Q 004737          516 VRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQM  583 (732)
Q Consensus       516 I~IWDl~s~---------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v  583 (732)
                      |+.|++...         ......+.||.+.|+.+++++.... |++|+.||+|+.|+...... .++.   .++-...+
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence            999965421         1234578899999999999998554 55999999999999876655 2222   22334555


Q ss_pred             EEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC-------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737          584 RFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  654 (732)
Q Consensus       584 ~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~-------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~  654 (732)
                      .+.... ...++...-+.-.++|.+....+..+..       ....+.-+.++|...+.+++. |+.|+++|..++   .
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---~  522 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---K  522 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---c
Confidence            554432 2233333334444455554443333332       123577888999998888888 899999999988   7


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD  704 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~  704 (732)
                      .++....|...++++++.|+|.+|++++.|+.+++|.+....++ ....|.
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            88888899999999999999999999999999999999776665 333443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=1.7e-18  Score=171.46  Aligned_cols=285  Identities=19%  Similarity=0.199  Sum_probs=203.1

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ++..+++|.+.|+|+.|-.++ +|.+|..-|.|++|++.+......++ .|...|+.+.--|+ ..+.+-+.|..+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            456788999999999998877 58899999999999999988888887 67788999998887 5688888999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCC--------CcEEEEEeCCC-cEEEEECCCCeeeeEEe-----ccCCeeEEEEe
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSK--------EDLLCSCDNNS-EIRYWSINNGSCAGVFK-----CQSGATQMRFQ  586 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg--------~~llaSgs~Dg-~I~iWDl~t~~~i~~~~-----~~~~i~~v~~s  586 (732)
                      +....+    ...|.-.++++.|++..        +.+++.-+... .+.+-|......+....     ..+.+.+..+.
T Consensus        84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            986443    23344556667666431        01111111000 11112221111111111     11234554433


Q ss_pred             C-CCC--EEEEEEcCCeEEEEECCCCeE----------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          587 P-RLG--RILAAAIENYISILDVETQVC----------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       587 p-~g~--~ll~~s~dg~I~IwDl~t~~~----------i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      . ++.  .+++|..+|.+.+||+.++..          +.....|..+|.++.|.+....=++++ +..+..|++.....
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence            2 222  355667789999999999733          334456889999999987544444555 77899998875421


Q ss_pred             -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          653 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       653 -~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                       ...-.+.......|..+.+-||++.+++++.|+.|+||+.++...+ .+..|.+.|.+++|+|+..++|+++.|+.|.+
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL  319 (323)
T ss_pred             cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence             1222233334556888999999999999999999999999999988 77899999999999999999999999999999


Q ss_pred             eC
Q 004737          731 WK  732 (732)
Q Consensus       731 WD  732 (732)
                      |+
T Consensus       320 Wk  321 (323)
T KOG0322|consen  320 WK  321 (323)
T ss_pred             ee
Confidence            96

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=9.6e-18  Score=173.11  Aligned_cols=283  Identities=16%  Similarity=0.226  Sum_probs=212.2

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC------CeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV  516 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t------~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I  516 (732)
                      +-+.+|.+-|+++.|+.++++||+|+.|..++||+++.      .+.+.... .|...|.|++|.....+|++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            44779999999999999999999999999999999863      24444443 355899999999999999999999999


Q ss_pred             EEEecCCCCceeEEeecCC---cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe----eeeEEeccCCeeEEEEeCCC
Q 004737          517 RVWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRL  589 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~---~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~----~i~~~~~~~~i~~v~~sp~g  589 (732)
                      .+.|+++.. .+..+. |.   +.|+.+..+|. .+++++.+.++.|.+||++...    .+...........+.|+|..
T Consensus       130 I~HDiEt~q-si~V~~-~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  130 IKHDIETKQ-SIYVAN-ENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             Eeeecccce-eeeeec-ccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            999999865 343333 43   58999999999 5677788899999999998654    22333344567889999976


Q ss_pred             CE-EEEEEcCCeEEEEECCCCe-EEEEE------cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          590 GR-ILAAAIENYISILDVETQV-CRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       590 ~~-ll~~s~dg~I~IwDl~t~~-~i~~l------~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      .. |++.+..+.+.+||++... .+...      ......-.++.|+|+|..|++.- ...-.+||+.+..  ..+..+.
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D  284 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSD  284 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEecc
Confidence            55 5566677899999998653 22221      11122335788999999888777 4456678887642  1222222


Q ss_pred             c------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CeEEEEccCCCCeeEE
Q 004737          661 C------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSL  710 (732)
Q Consensus       661 ~------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t------------------------~~~~~~~~h~~~V~sl  710 (732)
                      .      ....+.+|+|..+.. +++|+.+-.|++|.+..                        +....+.+|...++.+
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            1      123467788887776 88888888999998742                        1123677999999999


Q ss_pred             EEeCCCCEEEEEECCCeEEEeC
Q 004737          711 AASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       711 a~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|++...+|++.+....++||.
T Consensus       364 RF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  364 RFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             eecCCcceEeccchhhheeccc
Confidence            9999999999999999999993

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=2.5e-17  Score=170.81  Aligned_cols=228  Identities=14%  Similarity=0.261  Sum_probs=186.2

Q ss_pred             eccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          488 LEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       488 l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      +.+|+++|.+++|+| +...||+||.|.+|.||.+..+.      .++..+.+|...|-.+.|+|.-.++|++++.|..|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            468999999999999 56789999999999999987543      34678999999999999999999999999999999


Q ss_pred             EEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEeCCCCEEEEEe-
Q 004737          561 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-V~sla~spdg~~Lasgs-  638 (732)
                      .+||+.+++.+..+.+..-|.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|-.++.++.+|. 
T Consensus       157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs  236 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS  236 (472)
T ss_pred             EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence            9999999999999998888999999999999999999999999999999999888778763 34566778888666664 


Q ss_pred             ---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEE----EEccCCCCeeEE
Q 004737          639 ---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSSL  710 (732)
Q Consensus       639 ---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~----~~~~h~~~V~sl  710 (732)
                         +..+-+||..+......+.++.. .+.|.---|.+|...++.++ .|+.|+.|++......    .......+=..+
T Consensus       237 r~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~  315 (472)
T KOG0303|consen  237 RMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGM  315 (472)
T ss_pred             cccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccc
Confidence               66899999988766555556653 45566677889888777665 5779999999887643    222334444555


Q ss_pred             EEeCCC
Q 004737          711 AASTVN  716 (732)
Q Consensus       711 a~spdg  716 (732)
                      .|-|..
T Consensus       316 g~mPKR  321 (472)
T KOG0303|consen  316 GFMPKR  321 (472)
T ss_pred             cccccc
Confidence            555543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.6e-18  Score=172.67  Aligned_cols=266  Identities=17%  Similarity=0.295  Sum_probs=190.7

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEEecCCCCcee-EEeecCC-cce
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSL-RTFTGHS-TTV  538 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~s~~~~~-~~l~~h~-~~V  538 (732)
                      ..+|++...|.|++||..++..+..++++...+..++|..  ....+.+|+.||+|++||++...... ..+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888999999999999999999999999999999977  46789999999999999999765433 3445555 456


Q ss_pred             EEEEEcCCCCcEEEEEe----CCCcEEEEECCCCee-eeEEe--ccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCe
Q 004737          539 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVETQV  610 (732)
Q Consensus       539 ~sl~fspdg~~llaSgs----~Dg~I~iWDl~t~~~-i~~~~--~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~  610 (732)
                      .|++.... ..++++|.    .+-.|.+||++..+. +..+.  ++..|++++|+|.. +.|++|+.||.|.+||++...
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            66666544 46776664    367899999998766 54443  56789999999965 567889999999999998652


Q ss_pred             E---EEEEcCCCCCEEEEEEeCCC--CEEEEEeCCeEEEEECCCCCCceeEEEeecC------------CCceEEEEEeC
Q 004737          611 C---RLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP  673 (732)
Q Consensus       611 ~---i~~l~~h~~~V~sla~spdg--~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~------------~~~I~sl~fsp  673 (732)
                      .   +.....|...|.++.|..++  ++++....++..+|+++.+..   ...+...            -..+..+....
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~  276 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG  276 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence            2   22233477889999999887  544444499999999988742   1111110            11122222223


Q ss_pred             CCCEEEEEEc-CCeEEEEEC---CCCeEE----EEc-cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          674 TFPSLLVIGC-YETLELWNM---TENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~-dg~I~IwDl---~t~~~~----~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +...+++++. .+...++-+   .++...    .+. +|...|.++.|.-.+.+++||++||.+.+|+
T Consensus       277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            4444555444 454444433   333332    333 4778899999998899999999999999995

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=4e-17  Score=170.17  Aligned_cols=254  Identities=19%  Similarity=0.237  Sum_probs=189.8

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--------C--------CeEEEEeccCCCceEEEEEcC
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------S--------FTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--------t--------~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      .+.-...+..|...|++|.|+|+|++||+|+.+|.|.+|-..        +        ......+.+|...|..++|+|
T Consensus        54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~  133 (434)
T KOG1009|consen   54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP  133 (434)
T ss_pred             eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence            455677889999999999999999999999999999999655        2        344567789999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------  575 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-------  575 (732)
                      |+.++++++.|..+++||+..+. ....+.+|...|..++|.|-+ .++++-+.|...+.+++.....+....       
T Consensus       134 d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  134 DSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             CCceeeeeeccceEEEEEeccce-eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence            99999999999999999999887 478889999999999999985 455576667766666665433322211       


Q ss_pred             -------------ccC----CeeEEEEeCCCCEEEEEEc----CC-----eEEEEECCC-CeEEEEEcCCCCCEEEEEEe
Q 004737          576 -------------CQS----GATQMRFQPRLGRILAAAI----EN-----YISILDVET-QVCRLKLQGHKNQVHSVCWN  628 (732)
Q Consensus       576 -------------~~~----~i~~v~~sp~g~~ll~~s~----dg-----~I~IwDl~t-~~~i~~l~~h~~~V~sla~s  628 (732)
                                   +..    -...++|+|+|..+++.+.    .+     ..++|+-.. .++...+.....++..+.|+
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~  291 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS  291 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence                         111    1345789999988887543    22     345565443 24555555555566666555


Q ss_pred             C------------------CCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          629 T------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       629 p------------------dg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      |                  .+..++.++.+.|+|||..+.....++  -..|...|+.++|+++|.++++.+.||...+.
T Consensus       292 pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaws~dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  292 PVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             eeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceeecCCCcEEEEeccCCceEEE
Confidence            4                  334566777889999999886433333  33467889999999999999999999976666


Q ss_pred             ECCCCe
Q 004737          691 NMTENK  696 (732)
Q Consensus       691 Dl~t~~  696 (732)
                      .++..+
T Consensus       370 tfe~~e  375 (434)
T KOG1009|consen  370 TFEPWE  375 (434)
T ss_pred             EEcchh
Confidence            555444

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=7.7e-17  Score=183.50  Aligned_cols=280  Identities=16%  Similarity=0.230  Sum_probs=207.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC---CCceEEEEEcC--CCCeEEEEeCCCeEEEEecCCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      ...-..+.|+|-...++++...-.|+|||.+.++....|..+   ...|+.+.+-.  |..++++|+.||.|+||+--..
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            334567889998889999988889999999999988877654   35688998865  5678999999999999974322


Q ss_pred             C----ceeEEee---c----CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC--CeeEEEEeC-CCC
Q 004737          525 D----YSLRTFT---G----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQP-RLG  590 (732)
Q Consensus       525 ~----~~~~~l~---~----h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~--~i~~v~~sp-~g~  590 (732)
                      .    ..+..+.   +    ..+.-.-++|......++++|+ -..|+|||.....++..+....  .++.+.-+- .|+
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence            1    1111111   1    1122244677766667775554 7899999999888877766433  355554433 468


Q ss_pred             EEEEEEcCCeEEEEECCCC---eEEEEEcCCCCC--EEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecC-
Q 004737          591 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCT-  662 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~--V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-  662 (732)
                      .+++|..||.|++||.+..   ..+...+.|...  |..+.+.+.|- .|++++ ||.|++||++.... .....+..+ 
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence            8999999999999999865   346667778877  99999988764 488888 99999999998532 222222222 


Q ss_pred             --CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-------CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          663 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       663 --~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~-------h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                        ++..+++..+++...+++|+. +.|.||++....+..+..       ..+.+.|++|+|-.-+||+|+.|.+|.||.
T Consensus      1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence              335899999999998888888 999999997766543322       345789999999999999999999999983

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.76  E-value=4.3e-17  Score=163.15  Aligned_cols=292  Identities=18%  Similarity=0.240  Sum_probs=202.0

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECC-------CcEEEEEcCC---------CeE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTV  484 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~D-------g~I~VWd~~t---------~~~  484 (732)
                      ....|.-+.+...+.+...-.-.+|..|.+.|..++-+| |.+.|+++..+       ..+.||.+..         .++
T Consensus        35 slK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~  114 (370)
T KOG1007|consen   35 SLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLEC  114 (370)
T ss_pred             ccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhH
Confidence            334445555555555544444567889999999999999 55677776543       3578998753         234


Q ss_pred             EEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe-----ecCCcceEEEEEcCC-CCcEEEEEeCC
Q 004737          485 KSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNN  557 (732)
Q Consensus       485 ~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-----~~h~~~V~sl~fspd-g~~llaSgs~D  557 (732)
                      +..+. .+-+.|.||.|.|++..+++-. |..|.+|++.+.......+     .+|....++-+|+|. ..+.+++. .|
T Consensus       115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d  192 (370)
T KOG1007|consen  115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD  192 (370)
T ss_pred             hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CC
Confidence            44443 4566899999999999998875 8899999999766433222     235667888899982 23444344 48


Q ss_pred             CcEEEEECCCCeeeeEEec--cCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCC-C
Q 004737          558 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-E  632 (732)
Q Consensus       558 g~I~iWDl~t~~~i~~~~~--~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg-~  632 (732)
                      +++..||+++.++...+..  ...+..+.|+|+..+ |++++.||.|+|||.+.. .++..+.+|..+|.++.|+|.. .
T Consensus       193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence            9999999999888777763  234899999998665 556777899999999864 6788999999999999999964 5


Q ss_pred             EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEE
Q 004737          633 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA  711 (732)
Q Consensus       633 ~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla  711 (732)
                      +|++++ |..|.+|....-.....             +.|..+..-.-.......++  -+..+.+.++..|+..|.+++
T Consensus       273 LiLs~~SDs~V~Lsca~svSSE~q-------------i~~~~dese~e~~dseer~k--pL~dg~l~tydehEDSVY~~a  337 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCASSVSSEQQ-------------IEFEDDESESEDEDSEERVK--PLQDGQLETYDEHEDSVYALA  337 (370)
T ss_pred             EEEecCCCceeEEEeccccccccc-------------cccccccccCcchhhHHhcc--cccccccccccccccceEEEe
Confidence            666666 99999998755321111             11111110000000001122  344555557889999999999


Q ss_pred             EeCCCC-EEEEEECCCeEEE
Q 004737          712 ASTVNG-MVASASHDKCVKI  730 (732)
Q Consensus       712 ~spdg~-~LaSgs~DG~I~I  730 (732)
                      |+.-.. ++|+-+.||+|.|
T Consensus       338 WSsadPWiFASLSYDGRviI  357 (370)
T KOG1007|consen  338 WSSADPWIFASLSYDGRVII  357 (370)
T ss_pred             eccCCCeeEEEeccCceEEe
Confidence            987665 6778899999876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=9.7e-17  Score=163.31  Aligned_cols=242  Identities=19%  Similarity=0.283  Sum_probs=183.9

Q ss_pred             CCCCCeEEEEEcCCC----CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecC
Q 004737          448 ASTSKVESCHFSPDG----KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       448 ~H~~~V~~lafSpdg----~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~  522 (732)
                      .|....+.|+|+-|.    .++|.|+.-|.|+|.|+.+++....+.+|...|..|.|.|+ .++++++|.|.+|++|++.
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            367778889998753    47999999999999999999999999999999999999996 4689999999999999999


Q ss_pred             CCCceeEE---eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------------------------
Q 004737          523 NPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------  575 (732)
Q Consensus       523 s~~~~~~~---l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------------------------  575 (732)
                      +..+ +..   +.+|.+.|.+++|++++. .+++|+.|..|++|++...+....++                        
T Consensus       167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            8764 444   467999999999999986 66699999999999998433211111                        


Q ss_pred             -----ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CC-------------eEEEEEcCCCCCEEEEEE--eCCCCEE
Q 004737          576 -----CQSGATQMRFQPRLGRILAAAIENYISILDVE-TQ-------------VCRLKLQGHKNQVHSVCW--NTSGEYL  634 (732)
Q Consensus       576 -----~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~-------------~~i~~l~~h~~~V~sla~--spdg~~L  634 (732)
                           +...|.|+.|-  |+++++-+.++.|..|..- -.             ..+.++.-....|+-|.|  ++-.+.|
T Consensus       245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence                 00112223332  4678888889999999872 11             122333334455666554  5668899


Q ss_pred             EEEe-CCeEEEEECCCCCCceeE-EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          635 ASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       635 asgs-Dg~I~IWDl~t~~~~~~i-~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      +.|. .|.|.+||++..+...+- ..-......|...+|+.|+..|+..+.|+.|.-||..
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9988 899999999987653222 1222345678999999999999999999999999864

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.75  E-value=3e-16  Score=170.24  Aligned_cols=133  Identities=14%  Similarity=0.198  Sum_probs=108.8

Q ss_pred             EEEEEEcCCeEEEEECCCC-------eEEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737          591 RILAAAIENYISILDVETQ-------VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSC  661 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~-------~~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~  661 (732)
                      .|++++.||.|++|.+..+       .+...+..|...|+++.|+|= ...|++++ |-+|++||+.+.   .....+.+
T Consensus       642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~---~~~~~l~g  718 (1012)
T KOG1445|consen  642 RLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA---KLYSRLVG  718 (1012)
T ss_pred             HeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh---hhhheecc
Confidence            6789999999999998753       345667889999999999994 45677777 999999999988   56667889


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCC
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      |...|..++|+|+|+.+++.+.||+|++|+-++++.....+   -...-..|.|.-||++|++.+.|.
T Consensus       719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            99999999999999999999999999999988776542221   123345678888999988888765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=5.2e-17  Score=174.00  Aligned_cols=207  Identities=18%  Similarity=0.332  Sum_probs=161.2

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcC--CCCeEEEEeCCCeEEEE
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRVW  519 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IW  519 (732)
                      ...+.||++-|+|++|+.||.+|++|+.|-.+.|||.-..+.++.+ .+|...|.++.|-|  +.+++++|..|..|+++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            4568899999999999999999999999999999999988888777 68999999999998  56789999999999999


Q ss_pred             ecCC---------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEec----------cCC
Q 004737          520 DTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC----------QSG  579 (732)
Q Consensus       520 Dl~s---------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~~----------~~~  579 (732)
                      |+..         .....+.+..|...|..|+..|++.+.+.+++.||+|+-+|++.... -.....          --.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            9985         23345567789999999999999999999999999999999986321 111100          123


Q ss_pred             eeEEEEeCCCC-EEEEEEcCCeEEEEECCCC------------------eEEEEEc-CCC--------C---CEEEEEEe
Q 004737          580 ATQMRFQPRLG-RILAAAIENYISILDVETQ------------------VCRLKLQ-GHK--------N---QVHSVCWN  628 (732)
Q Consensus       580 i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~------------------~~i~~l~-~h~--------~---~V~sla~s  628 (732)
                      ..++.++|... +|++|+.|-..++||.+..                  .++..+. +|-        .   .++.+.|+
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn  282 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN  282 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence            56788898655 5677888899999995321                  1122221 121        1   25668899


Q ss_pred             CCCCEEEEEe-CCeEEEEECCC
Q 004737          629 TSGEYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       629 pdg~~Lasgs-Dg~I~IWDl~t  649 (732)
                      |+|.-|++.- ...|+++|+..
T Consensus       283 pNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  283 PNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             CCCcEEEEeeCCeEEEEEeecC
Confidence            9998777666 56899999754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=8.4e-17  Score=167.01  Aligned_cols=211  Identities=20%  Similarity=0.331  Sum_probs=167.0

Q ss_pred             CCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCceEEEEEcCC-CCe
Q 004737          436 KGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSR  506 (732)
Q Consensus       436 ~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~V~~l~fspd-g~~  506 (732)
                      .|..-..+..+.||+++|..++|+| +...||+|+.|.+|.||.+...       +.+..+.+|...|--|.|+|. .+.
T Consensus        67 ~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NV  146 (472)
T KOG0303|consen   67 TGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNV  146 (472)
T ss_pred             ccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhh
Confidence            3333344566789999999999999 5568999999999999998643       456778999999999999994 568


Q ss_pred             EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--eeEEE
Q 004737          507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMR  584 (732)
Q Consensus       507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~  584 (732)
                      |++++.|.+|.+||+.++.. +..+. |.+-|+++.|+.+| .++++.+.|..|+|||.++++.+..-..+.+  ...+.
T Consensus       147 Llsag~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  147 LLSAGSDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI  223 (472)
T ss_pred             HhhccCCceEEEEeccCCce-eeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence            99999999999999999874 44455 99999999999997 5667999999999999999999887755444  45677


Q ss_pred             EeCCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC
Q 004737          585 FQPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS  651 (732)
Q Consensus       585 ~sp~g~~ll~~s~----dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~  651 (732)
                      |-.++. +++.+.    +..+-+||.....   ....+. ..+.|.---|++|..+|+.++  |+.|+.|.+....
T Consensus       224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  224 FLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             EeccCc-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            777877 544443    6789999977643   233343 344566666788888888877  8999999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=2.5e-16  Score=181.96  Aligned_cols=291  Identities=18%  Similarity=0.223  Sum_probs=208.6

Q ss_pred             EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCC-------eEEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737          442 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD  513 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D  513 (732)
                      .+..+..|...|..++.+++. .++++|+.||+|+|||....       +...++......+.++.+.+.+..+|+++.|
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence            577788999999999998855 89999999999999997632       2233444456789999999999999999999


Q ss_pred             CeEEEEecCCCCce------eEEeecC-CcceE-EEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCee
Q 004737          514 RTVRVWDTENPDYS------LRTFTGH-STTVM-SLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGAT  581 (732)
Q Consensus       514 g~I~IWDl~s~~~~------~~~l~~h-~~~V~-sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~  581 (732)
                      |.|++.+++.....      .+....+ .+.+. .-+|.... ..+++.+...+.|..||++.......++.   ++-|+
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            99999999862211      1111112 22333 33443332 33677777788999999998776665553   46799


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCC---CEEEEEe---CCeEEEEECCCCCCce
Q 004737          582 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE  654 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg---~~Lasgs---Dg~I~IWDl~t~~~~~  654 (732)
                      +++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|..++.+|-.   .+.++++   .+.|.+|++.++....
T Consensus      1200 Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred             EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence            99999999999999999999999999998888765 245678888777642   4555444   5689999999874322


Q ss_pred             eEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--------------------
Q 004737          655 CIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------------------  698 (732)
Q Consensus       655 ~i~~~----------~------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--------------------  698 (732)
                      .+..-          .      .+......+++...+.++++++.|..|+.||....+..                    
T Consensus      1280 vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~ 1359 (1431)
T KOG1240|consen 1280 VLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDL 1359 (1431)
T ss_pred             EEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccc
Confidence            22111          0      11122344555566678999999999999997432200                    


Q ss_pred             -------------------------------------EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737          699 -------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  732 (732)
Q Consensus       699 -------------------------------------~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD  732 (732)
                                                           .-..|...|+++++.... .+|++++.||.|+||+
T Consensus      1360 ~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1360 STIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                                                 012366778888876544 5899999999999996

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.74  E-value=2.8e-16  Score=157.53  Aligned_cols=241  Identities=19%  Similarity=0.321  Sum_probs=180.5

Q ss_pred             cCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEEcCCCe--EE--EEe-----ccCCCceEEEEEcC-CCCeEEEEe
Q 004737          447 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESFT--VK--STL-----EEHTQWITDVRFSP-SLSRLATSS  511 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~-----~Lasgs~Dg~I~VWd~~t~~--~~--~~l-----~~h~~~V~~l~fsp-dg~~Lasgs  511 (732)
                      -.|.-+++.+-|.|+.+     +||+++  ..+++|.+...+  ..  ..+     ..+..++++..|+. |.++|.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            46889999999999863     567664  489999887422  11  111     34677899999987 778999999


Q ss_pred             CCCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-c---cCCeeEEEE
Q 004737          512 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C---QSGATQMRF  585 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~---~~~i~~v~~  585 (732)
                      -|-++.|||++++.  .....+..|..+|..|+|...+..+|++++.||.||+||++..+-...+. .   ..+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999862  23567888999999999999989999999999999999998765443332 1   234677888


Q ss_pred             eCCCCE-EEEEEc-CCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCC---ceeEE
Q 004737          586 QPRLGR-ILAAAI-ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSK---GECIH  657 (732)
Q Consensus       586 sp~g~~-ll~~s~-dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~---~~~i~  657 (732)
                      ++.... +++... ...|.|.|++.. .++.++.+|.+.|+.|+|.|. ...|++++ |..+.|||+.....   ..++.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence            876554 444444 468999999975 788899999999999999996 46788888 77999999986432   12233


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      .+. .+..|+.+.|++...-.+.+..++++.+.
T Consensus       331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            333 56789999999765444444445555443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=9.7e-16  Score=154.91  Aligned_cols=259  Identities=20%  Similarity=0.346  Sum_probs=185.3

Q ss_pred             cccCCeeeccccCCceeeccCCCCCCCCCceeeeee-cCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcE
Q 004737          398 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE-VGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA  474 (732)
Q Consensus       398 ~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd-~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I  474 (732)
                      .+|+.++.+.++|-.-+...    .-..|..+++|+ ......+..-...+.|.+.|..+.|.+  -|..+|+++.|++|
T Consensus        10 s~h~DlihdVs~D~~GRRmA----tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMA----TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cCCcceeeeeeecccCceee----eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            34445555555543333322    233455667777 333456677778999999999999976  68899999999999


Q ss_pred             EEEEcC---------CCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEEEecCCCCce------------eEEe
Q 004737          475 VLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRTF  531 (732)
Q Consensus       475 ~VWd~~---------t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~~~~------------~~~l  531 (732)
                      .||.-.         ......++......|++|.|.|.  |-.||+++.||++|||+.-+....            +...
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            999641         12344567778889999999994  778999999999999987654311            0112


Q ss_pred             ecCCcceEEEEEcCCC--CcEEEEEeCC-----CcEEEEECCCC--eeeeEE---eccCCeeEEEEeCCCC----EEEEE
Q 004737          532 TGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGVF---KCQSGATQMRFQPRLG----RILAA  595 (732)
Q Consensus       532 ~~h~~~V~sl~fspdg--~~llaSgs~D-----g~I~iWDl~t~--~~i~~~---~~~~~i~~v~~sp~g~----~ll~~  595 (732)
                      ..+..+..|+.|+|..  ..+|+.|+.+     +.++||.....  +....-   .+..+|+.++|.|.-+    .|+++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence            2466778999999752  4577777755     47888876543  333222   2457799999999643    47788


Q ss_pred             EcCCeEEEEECCCC--------------------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737          596 AIENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  654 (732)
Q Consensus       596 s~dg~I~IwDl~t~--------------------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~  654 (732)
                      +.|| |+||.++..                    +.+..+.+|.+.|..+.|+-.|..|++.+ ||.|++|...-....+
T Consensus       246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~k  324 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWK  324 (361)
T ss_pred             ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhe
Confidence            8899 999998731                    23445678999999999999999999988 9999999877665556


Q ss_pred             eEEEeec
Q 004737          655 CIHELSC  661 (732)
Q Consensus       655 ~i~~~~~  661 (732)
                      |...+..
T Consensus       325 C~sv~~~  331 (361)
T KOG2445|consen  325 CTSVLKA  331 (361)
T ss_pred             eeeEEec
Confidence            6665554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.5e-17  Score=176.57  Aligned_cols=290  Identities=20%  Similarity=0.312  Sum_probs=225.8

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcC--CCCeEEEEeCCCeEEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV  518 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~I  518 (732)
                      ....|..|.+.|..|.|...|..|++|+.|..|.+||...++.+..+ .+|...|.-..|-|  +...+++++.||.|++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            34568899999999999999999999999999999999998887766 57999998888988  4567999999999999


Q ss_pred             EecCCCCcee--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc----C---CeeEEEEeCCC
Q 004737          519 WDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----S---GATQMRFQPRL  589 (732)
Q Consensus       519 WDl~s~~~~~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----~---~i~~v~~sp~g  589 (732)
                      =.+....+..  +.+..|.++|..++.-|+..+-|.+|+.|+.+.-+|++.+.....+.+.    .   ....++..|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            8876554433  4566799999999999999999999999999999999887655444321    1   35678888865


Q ss_pred             C-EEEEEEcCCeEEEEECCCCeE------EEEEc------CCCCCEEEEEEeCCC-CEEEEEeCCeEEEEECCCCCC--c
Q 004737          590 G-RILAAAIENYISILDVETQVC------RLKLQ------GHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK--G  653 (732)
Q Consensus       590 ~-~ll~~s~dg~I~IwDl~t~~~------i~~l~------~h~~~V~sla~spdg-~~LasgsDg~I~IWDl~t~~~--~  653 (732)
                      . .+++++.|-.+++||.+.-..      +..+.      ...-.|+|++|+.++ .+|++..|..|++|.-..+.-  .
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence            5 688889999999999875321      22222      223478999999665 555555688999995433211  0


Q ss_pred             -------eeEEE-eecCCC--ceEEEE-EeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEE
Q 004737          654 -------ECIHE-LSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVAS  721 (732)
Q Consensus       654 -------~~i~~-~~~~~~--~I~sl~-fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaS  721 (732)
                             ..++. +++|.+  .|..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+...-|+||.-+|--.+||+
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs  453 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS  453 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence                   11222 555543  355554 5688899999999999999999999988 44455558999999999999999


Q ss_pred             EECCCeEEEe
Q 004737          722 ASHDKCVKIW  731 (732)
Q Consensus       722 gs~DG~I~IW  731 (732)
                      ++-|..||||
T Consensus       454 SGid~DVKIW  463 (559)
T KOG1334|consen  454 SGIDHDVKIW  463 (559)
T ss_pred             cCCccceeee
Confidence            9999999999

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.74  E-value=7.5e-16  Score=173.91  Aligned_cols=258  Identities=18%  Similarity=0.233  Sum_probs=188.6

Q ss_pred             CcEEEEEcCCC-eEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCcee-----EEeecCCcceEEEEEc
Q 004737          472 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFH  544 (732)
Q Consensus       472 g~I~VWd~~t~-~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~-----~~l~~h~~~V~sl~fs  544 (732)
                      +.+.||+++.. .....+ .-...|+|++|+| +..++|.|+.+|.|.+||++......     .....|..+|+.+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999876 333334 3567899999999 56788899999999999999766421     2345688999999997


Q ss_pred             CCCCc-EEEEEeCCCcEEEEECCCCeee------eEE-------eccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 004737          545 PSKED-LLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ  609 (732)
Q Consensus       545 pdg~~-llaSgs~Dg~I~iWDl~t~~~i------~~~-------~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~  609 (732)
                      .+... -+++++.||.|..|+++.-...      ...       .....++++.|.+.. ..+++|+.+|.|..-+....
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            65333 3448888999999988753321      111       122347889998754 56888888999887443322


Q ss_pred             ---e-----EEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE-E
Q 004737          610 ---V-----CRLKLQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL-L  679 (732)
Q Consensus       610 ---~-----~i~~l~~h~~~V~sla~spdg~-~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L-~  679 (732)
                         .     ....+..|.++|+++.++|-+. ++++++|.+|+||.-....  .++..+..+...+++++|||....+ +
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence               1     1234556889999999999765 4455559999999987321  5566666677779999999988654 5


Q ss_pred             EEEcCCeEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          680 VIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++..+|.|.+||+......   ....+....+.+.|++.++.|++|+..|.|++|+
T Consensus       459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            5556999999999655433   3444566778888999999999999999999985

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.73  E-value=5.7e-16  Score=157.33  Aligned_cols=231  Identities=19%  Similarity=0.284  Sum_probs=181.6

Q ss_pred             CCeEEEEEc-------CCCCEEEEEECCCcEEEEEcCCCeEEEEecc--CCCc---eEEEEEcCCCCeEEEEeCCCeEEE
Q 004737          451 SKVESCHFS-------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQW---ITDVRFSPSLSRLATSSADRTVRV  518 (732)
Q Consensus       451 ~~V~~lafS-------pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~---V~~l~fspdg~~Lasgs~Dg~I~I  518 (732)
                      ..|...+|-       |+..++|+.+.|.-|++||.-+|+....+..  |.+.   ..+++|+|||.+|++| ....|+|
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV  183 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence            457888886       5778999999999999999999998877753  4433   4689999999999887 6789999


Q ss_pred             EecCCCCc--eeEEe-----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC
Q 004737          519 WDTENPDY--SLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG  590 (732)
Q Consensus       519 WDl~s~~~--~~~~l-----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~  590 (732)
                      ||+..+..  .....     .+..+.|.|++|+|-....++.++....+-||.-..+.++..+. +.++|+.+.|.++|+
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence            99954332  12222     23367899999999988899999988888898888877777665 456799999999999


Q ss_pred             EEEEEEc-CCeEEEEECCCC-eEEEEEcCCCC-CEEE--EEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004737          591 RILAAAI-ENYISILDVETQ-VCRLKLQGHKN-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN  664 (732)
Q Consensus       591 ~ll~~s~-dg~I~IwDl~t~-~~i~~l~~h~~-~V~s--la~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~  664 (732)
                      +|++|+. +..|..||++.. .++..+..|.+ .-..  ....|++++|++|+ ||.|++||+.+..  ..+..+..+..
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd  341 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSD  341 (406)
T ss_pred             eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccccccc
Confidence            9999987 679999999964 56667776655 2223  44568899999998 9999999998732  45566667788


Q ss_pred             ceEEEEEeCCCCEEEEEEcC
Q 004737          665 KFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~d  684 (732)
                      .++.++++|--..+++++..
T Consensus       342 ~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  342 TVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccceecCcccceeeeccCc
Confidence            89999999997766665543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.9e-16  Score=162.04  Aligned_cols=265  Identities=17%  Similarity=0.195  Sum_probs=192.7

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCCCeEEEEe--ccCC-CceEEEEE
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTL--EEHT-QWITDVRF  500 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~-~~V~~l~f  500 (732)
                      ...+|+++..+|..+.+   +.+|...++.+.|..  ....+.+|+.||+|++||++.......+  ..+. .+..|++.
T Consensus        49 ngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~  125 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL  125 (376)
T ss_pred             CCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence            45678999988866555   667777777888876  4567999999999999999987655443  4454 46677777


Q ss_pred             cCCCCeEEEEeC----CCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eee
Q 004737          501 SPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCA  571 (732)
Q Consensus       501 spdg~~Lasgs~----Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~----~~i  571 (732)
                      ...+..+++|..    |-.|.+||++..+..++ ....|.+.|+++.|+|.+.++|++|+.||.|.+||++..    ..+
T Consensus       126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~  205 (376)
T KOG1188|consen  126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL  205 (376)
T ss_pred             cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence            777888888754    67899999998776444 456799999999999999999999999999999999754    244


Q ss_pred             eEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCC------------CCEEEEEEeCCCCEEEEEe
Q 004737          572 GVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK------------NQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       572 ~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------------~~V~sla~spdg~~Lasgs  638 (732)
                      .++.+...|.++.|..++ +.|.+.+......+|+++.+.+...+....            ..+.......+...++.+.
T Consensus       206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g  285 (376)
T KOG1188|consen  206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG  285 (376)
T ss_pred             HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence            566666779999998775 469999999999999999887655443210            1121111122333444333


Q ss_pred             --CCeEEEEECC---CCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          639 --DELVRVWSIG---SGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       639 --Dg~I~IWDl~---t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                        -++..++-+.   ++.....+..+.+ |..-|.++.|...+..+++|++||.+.+|...
T Consensus       286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence              3455554443   3333344444554 55668888999899999999999999999853

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.8e-15  Score=169.59  Aligned_cols=282  Identities=17%  Similarity=0.279  Sum_probs=210.7

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--C--eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ..|.-.++|.+++|.++++|+|..||.|.||.--.  .  .....+.=|...|++++|+++|.+|++|+..+.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            45777799999999999999999999999996432  1  2234555688899999999999999999999999999999


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------------cCCeeEEEEeCCCC
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLG  590 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~------------~~~i~~v~~sp~g~  590 (732)
                      +++  ...+..-.++|..+.++||++.+. ....|..|.+....+.+....+.+            .+-.+.++++|.-+
T Consensus       282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            977  466677789999999999976655 445588899888765554443332            12256789999888


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEEcC-----C------CCCEEEEEEeCCCCEEEEEe---------CC--eEEEEECC
Q 004737          591 RILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG  648 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h------~~~V~sla~spdg~~Lasgs---------Dg--~I~IWDl~  648 (732)
                      .++..+..|.|.+||+.+.+.+..+..     +      ...++.++.+..|.++++..         ||  .+++|-..
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            899999999999999988766655431     1      22467788888899998864         33  68899877


Q ss_pred             CCCCceeEE--EeecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCe----------EE-EEccCCCCeeEEEEe
Q 004737          649 SGSKGECIH--ELSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS  713 (732)
Q Consensus       649 t~~~~~~i~--~~~~~~~~I~sl~fsp-dg~-~L~sgs~dg~I~IwDl~t~~----------~~-~~~~h~~~V~sla~s  713 (732)
                      .......+.  ....|+..+...+|.+ ... ..++++.|+.++||-+...+          +. .-..|..++++++|+
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS  518 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence            654433322  2345666665555544 333 68899999999999883322          11 111478899999999


Q ss_pred             CCCCEEEEEECCCeEEEeC
Q 004737          714 TVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       714 pdg~~LaSgs~DG~I~IWD  732 (732)
                      .||. +++++.|++|.|||
T Consensus       519 ~dGs-lla~s~~~~Itiwd  536 (792)
T KOG1963|consen  519 QDGS-LLAVSFDDTITIWD  536 (792)
T ss_pred             CCCc-EEEEecCCEEEEec
Confidence            9995 55567889999997

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.71  E-value=9.3e-16  Score=173.15  Aligned_cols=264  Identities=17%  Similarity=0.210  Sum_probs=196.6

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeE--EEE----eccCCCceEEEEE
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KST----LEEHTQWITDVRF  500 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~--~~~----l~~h~~~V~~l~f  500 (732)
                      ..-+|+......  +...+ .-...|+|++|+| +..+||.|..+|.|.+||+..+..  ...    ...|..+|+.+.|
T Consensus       223 ~~~vW~~~~p~~--Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  223 VLLVWSLKNPNT--PELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             eEEEEecCCCCC--ceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            566777766521  12222 3456799999999 566788889999999999987655  222    2468999999999


Q ss_pred             cCCC--CeEEEEeCCCeEEEEecCCCCceeEEe-----e------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-
Q 004737          501 SPSL--SRLATSSADRTVRVWDTENPDYSLRTF-----T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-  566 (732)
Q Consensus       501 spdg--~~Lasgs~Dg~I~IWDl~s~~~~~~~l-----~------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-  566 (732)
                      ..+.  .-|++++.||.|+.|+++.-..+....     .      .-...+++++|.+...+.++.|+.+|.|..-+.. 
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            7643  459999999999999987543322111     1      1234689999999888899999999998873332 


Q ss_pred             --CCe-----ee-eEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEeCCCC-EEEE
Q 004737          567 --NGS-----CA-GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLAS  636 (732)
Q Consensus       567 --t~~-----~i-~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~V~sla~spdg~-~Las  636 (732)
                        ...     .. ....+.+.+..+.++|-+..++..+.|.+++||... ...++..+..+...|++++|+|... .|++
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence              222     11 122355779999999998888877779999999988 6677888887888899999999865 5555


Q ss_pred             Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +. ||.|.|||+..... .++..........+.+.|++.|+.|++|...|.+++|++...
T Consensus       460 ~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             EcCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            55 99999999987544 344444444666777888888999999999999999999643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.4e-15  Score=171.00  Aligned_cols=233  Identities=15%  Similarity=0.104  Sum_probs=164.9

Q ss_pred             CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737          471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  547 (732)
Q Consensus       471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg  547 (732)
                      +..|.|||.+... ...+..|...+.+++|+|||+.|++++.+   ..|++||+.++...  .+....+....++|+|||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG  259 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDG  259 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCC
Confidence            4689999987654 45677788889999999999999988754   37999999876532  222222334578999999


Q ss_pred             CcEEEEEeCCCcEEE--EECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeEEEEEcCCCCCE
Q 004737          548 EDLLCSCDNNSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVCRLKLQGHKNQV  622 (732)
Q Consensus       548 ~~llaSgs~Dg~I~i--WDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t--~~~i~~l~~h~~~V  622 (732)
                      +.++++.+.+|.+.|  ||+.++...........+....|+|++..+++++ .++...||++..  +.. ..+ .+..  
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--  335 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--  335 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--
Confidence            888877777886554  5776666554444445577899999999887766 467777776643  322 222 3433  


Q ss_pred             EEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCCe-EEE
Q 004737          623 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TENK-TLT  699 (732)
Q Consensus       623 ~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl--~t~~-~~~  699 (732)
                      .++.|+|||++|+..+...+.+||+.++..   ......  .....+.|+|++++|++++.++.+.+|++  .+++ ...
T Consensus       336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        336 YSAQISADGKTLVMINGDNVVKQDLTSGST---EVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            467899999999888744566799987632   111111  12356789999999999999987776664  2344 446


Q ss_pred             EccCCCCeeEEEEeCC
Q 004737          700 LSAHDKLVSSLAASTV  715 (732)
Q Consensus       700 ~~~h~~~V~sla~spd  715 (732)
                      +..|.+.+..++|+|-
T Consensus       411 l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        411 LPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ccCCCCCCCCcccCCC
Confidence            7788888999999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.9e-15  Score=148.28  Aligned_cols=229  Identities=19%  Similarity=0.206  Sum_probs=169.7

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCC---------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s---------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD  564 (732)
                      .|..-+|+|.+++|++|..+|.|.+..+.+         ++..+..+.+|+++|+.++|+   +.+|++|+ ||.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence            356668999999999999999999998763         234456678999999999999   34555777 69999998


Q ss_pred             CCCCee----ee--EEe--------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737          565 INNGSC----AG--VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       565 l~t~~~----i~--~~~--------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd  630 (732)
                      .+....    ..  ...        .-..|+++-..|..+.++.++.|+.++.||+++++..+++++|...|.++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            754322    11  111        1124788999999999999999999999999999999999999999999998555


Q ss_pred             CCEEEEEe-CCeEEEEECCCCCCceeEEEeec-------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 004737          631 GEYLASVS-DELVRVWSIGSGSKGECIHELSC-------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA  702 (732)
Q Consensus       631 g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~  702 (732)
                      ..-|++|+ ||+++|||.++.+....+..++.       .+..|-+++.  +..++++| ....+.+|+++..+......
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-CCCceeEEeccCCCceEEEe
Confidence            55566677 99999999999854333333221       1233444444  44445544 45579999999999887777


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          703 HDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       703 h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ..+.|..+.|..  +.+++++....|.-|
T Consensus       245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  245 IPARVHLVDFVD--DCVLIGGEGNHVQSY  271 (325)
T ss_pred             cccceeEeeeec--ceEEEeccccceeee
Confidence            888899999863  456677765555544

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.2e-16  Score=172.57  Aligned_cols=234  Identities=20%  Similarity=0.212  Sum_probs=173.5

Q ss_pred             Cceeeeeec-----CCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----------CeEEEEecc
Q 004737          426 DRVGRSAEV-----GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEE  490 (732)
Q Consensus       426 d~~~r~wd~-----~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~  490 (732)
                      +.++.+|..     .....+.++.+|++|.++|.|+++.+++..+++|+.||+|+.|++..          ......+.+
T Consensus       315 d~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G  394 (577)
T KOG0642|consen  315 DGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG  394 (577)
T ss_pred             ccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceec
Confidence            444455554     33567788999999999999999999999999999999999996541          123356789


Q ss_pred             CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      |.+.|+.++++.....|++++.||+|++|+......+........+...+++|-.....+.++...-+.--+++++....
T Consensus       395 htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~  474 (577)
T KOG0642|consen  395 HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD  474 (577)
T ss_pred             cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh
Confidence            99999999999998999999999999999988655311111222233456666543322332322233333344444433


Q ss_pred             eeEEecc--------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCe
Q 004737          571 AGVFKCQ--------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL  641 (732)
Q Consensus       571 i~~~~~~--------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~  641 (732)
                      +..+...        ..+..+.+.|.....+++..|+.|+++|..+++.+.....|...++++++.|+|-+|++++ |+.
T Consensus       475 ~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s  554 (577)
T KOG0642|consen  475 LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS  554 (577)
T ss_pred             eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce
Confidence            3333311        2366788899999999999999999999999999999999999999999999999999999 999


Q ss_pred             EEEEECCCCCCceeEEEeecC
Q 004737          642 VRVWSIGSGSKGECIHELSCT  662 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~~~~  662 (732)
                      +++|.+...   .|+.+...|
T Consensus       555 v~l~kld~k---~~~~es~~~  572 (577)
T KOG0642|consen  555 VRLWKLDVK---TCVLESTAH  572 (577)
T ss_pred             eehhhccch---heeeccccc
Confidence            999998765   555554433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=9.7e-16  Score=172.28  Aligned_cols=235  Identities=17%  Similarity=0.169  Sum_probs=167.6

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeE--EEEeccCCCceEEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVR  499 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~--~~~l~~h~~~V~~l~  499 (732)
                      .+..+.+||.+...    ...+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ...++
T Consensus       182 ~~~~i~i~d~dg~~----~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~  254 (429)
T PRK01742        182 QPYEVRVADYDGFN----QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPA  254 (429)
T ss_pred             ceEEEEEECCCCCC----ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCcee
Confidence            34667777765432    34567788899999999999999887654   3699999988754  3333333   44689


Q ss_pred             EcCCCCeEEEEe-CCCeEEEE--ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe
Q 004737          500 FSPSLSRLATSS-ADRTVRVW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK  575 (732)
Q Consensus       500 fspdg~~Lasgs-~Dg~I~IW--Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~  575 (732)
                      |+|||+.|++++ .+|.+.||  |+.++.  ...+..+...+..+.|+|+|..+++++..++...||++... .....+.
T Consensus       255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~  332 (429)
T PRK01742        255 FSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG  332 (429)
T ss_pred             ECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec
Confidence            999999888765 68876665  555443  45566677788999999999888878777888888876432 2222232


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737          576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  654 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~  654 (732)
                      . .. ....|+|+++++++++.++ +.+||+.+++.......+  ...++.|+|+|++|+.++ ++.+.+|++.+. ...
T Consensus       333 ~-~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~  406 (429)
T PRK01742        333 G-RG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGR  406 (429)
T ss_pred             C-CC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence            2 22 4578999999998887754 666999988655332222  345788999999999988 887777775321 115


Q ss_pred             eEEEeecCCCceEEEEEeCC
Q 004737          655 CIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspd  674 (732)
                      .+..+..+.+.+...+|+|-
T Consensus       407 ~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        407 FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEccCCCCCCCCcccCCC
Confidence            66677777778888999885

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=9.2e-15  Score=143.50  Aligned_cols=268  Identities=15%  Similarity=0.182  Sum_probs=191.8

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCC----------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      .|.+-+|+|.+++|+.|..+|.|.|+.+.+          ...+....+|.++|+.++|..  .+|++| .||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~-gdG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSG-GDGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeec-cCceEEEeee
Confidence            477789999999999999999999998753          234455689999999999983  466666 4699999987


Q ss_pred             CCCCcee-------EEeecCC-----cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCC
Q 004737          522 ENPDYSL-------RTFTGHS-----TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR  588 (732)
Q Consensus       522 ~s~~~~~-------~~l~~h~-----~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~  588 (732)
                      .......       ....-|.     -.|+++-..|..+.++.+| .|+.++.||+++|+..++++.+.. +.++.--..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            6432210       0111122     4688999999877777555 599999999999999999997655 777777667


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----------CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE
Q 004737          589 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       589 g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~----------~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~  658 (732)
                      ...+++|+.||++++||.++++++..+...+          .+|-+++  -+..++++|....+.+|.++..   ++...
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v  242 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV  242 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence            7889999999999999999999988775422          2455555  4566888887889999999987   34433


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEe
Q 004737          659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW  731 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IW  731 (732)
                      +. -..++..+.|..+  .+++++....|.-|.+..--...........++..|+..- ++|-.++..+.+.|+
T Consensus       243 fp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  243 FP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             Ee-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            33 2456777888655  4777777778888877543333333333334455554332 455556667777765

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=8.4e-16  Score=164.44  Aligned_cols=262  Identities=16%  Similarity=0.236  Sum_probs=189.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE-cC-------CCCeEEEEeCCCeEEEE
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW  519 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f-sp-------dg~~Lasgs~Dg~I~IW  519 (732)
                      .|...|.||.|+.....+.+++ |..+.+|..-+.+....+.-..+.|....+ -+       ....|+.++.||.+.|.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            4667788999998876666665 555555543332322222212222211111 11       23578889999999998


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      +-..  ...+....|.+.|.+-.|+|+|.-++ +++.||.|++|.-...-..........|.|++|.|+.+.++.+. .+
T Consensus        91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~  166 (737)
T KOG1524|consen   91 NKSA--RVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG  166 (737)
T ss_pred             cccc--hhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence            7553  24567889999999999999987777 88889999999865322222223456799999999988776554 46


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      .+.|=.+.....+..++.|.+-|.++.|++...+|++|+ |-..+|||-..    ..+..-..|+.+|++++|.|+ + +
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~-~  240 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-K-D  240 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-c-c
Confidence            677777777777788999999999999999999999999 88999999654    566667788999999999999 4 3


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          679 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      +..++..++++          .....+.|..++||+||..++.|+..|.|.+
T Consensus       241 ~~v~S~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  241 YLLWSYNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            33333444542          1244578999999999999999999887653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.69  E-value=1.7e-15  Score=165.25  Aligned_cols=250  Identities=16%  Similarity=0.191  Sum_probs=189.5

Q ss_pred             eeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEE
Q 004737          429 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA  508 (732)
Q Consensus       429 ~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La  508 (732)
                      +-++|...|.   .+.++++|++.|+|++|+.||+.+|+|+.|+.|.||+..- +-+.. ..|++.|.|+.|+|-...|+
T Consensus        35 lliyD~ndG~---llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~La  109 (1081)
T KOG1538|consen   35 LLVYDTSDGT---LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQLA  109 (1081)
T ss_pred             EEEEeCCCcc---cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceee-eccCCeeeEeecCchHHHhh
Confidence            4456777774   4677999999999999999999999999999999998543 22222 25999999999999989999


Q ss_pred             EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEEEE
Q 004737          509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF  585 (732)
Q Consensus       509 sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~  585 (732)
                      +++-. ..-+|..+....  ...+ ....|.+++|..|| .+++.|-.+|+|.+-+-...+.+..-+   ..++|.+++|
T Consensus       110 sCsLs-dFglWS~~qK~V--~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~  184 (1081)
T KOG1538|consen  110 SCSLS-DFGLWSPEQKSV--SKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICW  184 (1081)
T ss_pred             hcchh-hccccChhhhhH--Hhhh-hheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEe
Confidence            98754 477898775432  2222 34578899999997 566688889999998765444333333   3456999999


Q ss_pred             eCCC-----CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737          586 QPRL-----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       586 sp~g-----~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      +|..     ..+++.....++.+|.+.. +.+..-+.-.-...|+.+.++|+|++.|+ |+.+++|.-+.    ..+.++
T Consensus       185 ~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTv  259 (1081)
T KOG1538|consen  185 NPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTV  259 (1081)
T ss_pred             cCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeec
Confidence            9964     3566777777777777653 22222222333557899999999999888 99999997443    556666


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      .....+|+.+...|++.+++.|+.||+|..|++.
T Consensus       260 g~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  260 GEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            6678899999999999999999999999999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=6.1e-14  Score=145.29  Aligned_cols=233  Identities=17%  Similarity=0.249  Sum_probs=174.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC--CeEEEEecCCCCce
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYS  527 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~s~~~~  527 (732)
                      ...|..+.|..|...|..|+.|| .++|+.+..............|...-|+.  .++|..+.+  +.+++++++.... 
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~-   80 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT-   80 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence            34577888999999999999887 57888776554332222334455566654  466666554  4589999986553 


Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc----CCeeEEEEeCCCCEEEEEEc--CCeE
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAAI--ENYI  601 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----~~i~~v~~sp~g~~ll~~s~--dg~I  601 (732)
                      +..+. ...+|.++.++.+  +++ ++=. ..|+|||+++.+.+.++...    .++..+.+++.+.+++.-+.  .|.|
T Consensus        81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            33333 3467999999854  344 4443 34999999999999888743    23555555555567776433  6899


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS  677 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl~fspdg~~  677 (732)
                      .+||+.+-+.+..+..|++.+-+++|+++|.+|++++ .| .||||.+.++   ..+.+++-.  ...|.+++|+|++.+
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence            9999999999999999999999999999999999999 55 7999999988   555555422  356899999999999


Q ss_pred             EEEEEcCCeEEEEECCC
Q 004737          678 LLVIGCYETLELWNMTE  694 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t  694 (732)
                      |++.+..++|+||.++.
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            99999999999998754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=2.5e-14  Score=160.72  Aligned_cols=235  Identities=13%  Similarity=0.106  Sum_probs=171.4

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~  548 (732)
                      ..|.+||.+..... .+..+...+.+.+|+|||+.|+..+.   +..|.+||+.++..  +.+....+.+..+.|+|||+
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence            37889998765443 34456678999999999999987653   45799999987652  33333334456789999998


Q ss_pred             cEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737          549 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       549 ~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~  623 (732)
                      .++++.+.+|  .|++||+.+++..........+....|+|+++.|+.++.+ +  .|+++|+.++... .+..+...+.
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~  334 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ  334 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence            8887766565  5999999988776655555567889999999999887764 3  5666677776543 3333444566


Q ss_pred             EEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737          624 SVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK  696 (732)
Q Consensus       624 sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~  696 (732)
                      +.+|+|||++|+..+  ++  .|.+||+.++.. .   .+.. ........|+|||++|++++.++   .++++++....
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~---~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-Q---VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-E---EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence            789999999998766  32  688999987632 1   2221 12234678999999999999876   47888887776


Q ss_pred             EEEEccCCCCeeEEEEeCC
Q 004737          697 TLTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       697 ~~~~~~h~~~V~sla~spd  715 (732)
                      ...+..|.+.+...+|+|-
T Consensus       410 ~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        410 KARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             eEECccCCCCcCCcccCCC
Confidence            6777788889999999873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.67  E-value=2.3e-14  Score=146.00  Aligned_cols=271  Identities=15%  Similarity=0.201  Sum_probs=200.1

Q ss_pred             CCeEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCcee
Q 004737          451 SKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasg-s~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      +.|.-+.|..|..+++++ ..|+.|.+|++...+-...+......+..++|+|||+ +|.+...|-.|.||.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            567788888887776554 5678999999998888888888889999999999995 55677789999999999865322


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeC-----------------------------------CCcEEEEECCCCeeeeE
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV  573 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~-----------------------------------Dg~I~iWDl~t~~~i~~  573 (732)
                        +.-....+..++|+|+|....+..-.                                   +..+.+||---.-.+..
T Consensus       129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence              22223446888888887544332211                                   23455565433333344


Q ss_pred             EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE----------------------------------------
Q 004737          574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL----------------------------------------  613 (732)
Q Consensus       574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~----------------------------------------  613 (732)
                      +...-++..++|+|.+.++++|+.|+.++|.+--+.+...                                        
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            4555678999999999999999999988876532211100                                        


Q ss_pred             --------------------EEc------CCCCCEEEEEEeCCCCEEEEEeCC---eEEEEECCCCCCceeEEEeecCCC
Q 004737          614 --------------------KLQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN  664 (732)
Q Consensus       614 --------------------~l~------~h~~~V~sla~spdg~~LasgsDg---~I~IWDl~t~~~~~~i~~~~~~~~  664 (732)
                                          .++      ...-.+--++|++|..|+++-.|.   .+-+||+...    .++.+-....
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~  362 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH  362 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence                                000      011235568999999999998755   7999999874    3333334567


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737          665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC  727 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~  727 (732)
                      +|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus       363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            899999999999999999999999999888777766666678999999999999999998864

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=8.7e-15  Score=146.95  Aligned_cols=247  Identities=19%  Similarity=0.241  Sum_probs=183.2

Q ss_pred             eEEEEeccCCCceEEEEEcC---CCCeEEEEeC----CCeEEEEecCCCCcee--EEeecCCcceEEEEEcCCC----Cc
Q 004737          483 TVKSTLEEHTQWITDVRFSP---SLSRLATSSA----DRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSK----ED  549 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fsp---dg~~Lasgs~----Dg~I~IWDl~s~~~~~--~~l~~h~~~V~sl~fspdg----~~  549 (732)
                      +.+..+..+ -.+.++.|+.   ...+||.|+.    .+.|.|..++......  ..-..|.-+++.+-|.|+.    ..
T Consensus        36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence            334444433 4578888873   2457888875    4567776655333222  2334789999999999985    35


Q ss_pred             EEEEEeCCCcEEEEECCCCeee----eEE------eccCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCe---EEEEE
Q 004737          550 LLCSCDNNSEIRYWSINNGSCA----GVF------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQV---CRLKL  615 (732)
Q Consensus       550 llaSgs~Dg~I~iWDl~t~~~i----~~~------~~~~~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~---~i~~l  615 (732)
                      +||+++  -.+|+|.+...+..    ..+      ....+++++.|+.- -++|.+.+-|-+..|||++++.   ....+
T Consensus       115 lLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 LLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            776664  47999998742211    111      12356888888763 4567778889999999999863   45667


Q ss_pred             cCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC-eEEEEE
Q 004737          616 QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE-TLELWN  691 (732)
Q Consensus       616 ~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg-~I~IwD  691 (732)
                      ..|..+|..|+|...+. .|++++ ||.||+||++..+....+.+-.....+...++|++.. +++++...|. .|.|.|
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD  272 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD  272 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence            78999999999998654 666666 9999999999987777777766667889999999865 5666666665 799999


Q ss_pred             CCCCeEE--EEccCCCCeeEEEEeCCC-CEEEEEECCCeEEEeC
Q 004737          692 MTENKTL--TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  732 (732)
Q Consensus       692 l~t~~~~--~~~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWD  732 (732)
                      ++.....  ++..|.+.|++++|.|.. ..|+||++|..+.|||
T Consensus       273 iR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD  316 (364)
T KOG0290|consen  273 IRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD  316 (364)
T ss_pred             ecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence            9876543  888999999999999975 5899999999999997

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=3.4e-16  Score=165.41  Aligned_cols=262  Identities=16%  Similarity=0.261  Sum_probs=211.9

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      -+.+.++.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++ ....+.|||-..  ..+..+.
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G--tElHClk  207 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG--TELHCLK  207 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecCCC--cEEeehh
Confidence            46789999999999999999999999999999888853 4569999999988888887 567899999764  2466666


Q ss_pred             cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737          533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVC  611 (732)
Q Consensus       533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~  611 (732)
                      .|. .|..+.|.|. .++|++++..|.++.-|+.+|+.+..+... +.+..++-+|-...+-+|...|+|.+|.....++
T Consensus       208 ~~~-~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  208 RHI-RVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hcC-chhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            554 6899999998 688999999999999999999999877653 5577788899888888999999999999999999


Q ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      +..+..|.++|.+|++.++|.|+++.+ |..++|||++..   ..++++.. ..+...++||..|  +++.+....|.||
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence            999999999999999999999999999 999999999987   34444443 4566778888777  5666666689999


Q ss_pred             E-CCCCe---EEEEccC--CCCeeEEEEeCCCCEEEEEECCC
Q 004737          691 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       691 D-l~t~~---~~~~~~h--~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      . .-.+.   ...+..|  .+.|..+.|+|-..+|-.|..-|
T Consensus       360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            4 32211   1122233  45899999999777666665544

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=2.3e-13  Score=149.34  Aligned_cols=297  Identities=16%  Similarity=0.158  Sum_probs=191.8

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR  506 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~  506 (732)
                      ..+.+.|..+...   +..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||++
T Consensus        16 ~~v~viD~~t~~~---~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~   91 (369)
T PF02239_consen   16 GSVAVIDGATNKV---VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKY   91 (369)
T ss_dssp             TEEEEEETTT-SE---EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTE
T ss_pred             CEEEEEECCCCeE---EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCE
Confidence            4556666655544   44454443333457899999999999999999999999999999997654 4688999999999


Q ss_pred             EEEEe-CCCeEEEEecCCCCceeEEeec-------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEec
Q 004737          507 LATSS-ADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKC  576 (732)
Q Consensus       507 Lasgs-~Dg~I~IWDl~s~~~~~~~l~~-------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i--~~~~~  576 (732)
                      +++++ .++.+.|+|.++.+. ++.+..       ....+..|..+|....++++--+.+.|.+.|....+.+  ..+..
T Consensus        92 ~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen   92 VYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             EEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred             EEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence            98776 589999999998663 444432       23457788888887667766666688988898765433  44555


Q ss_pred             cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEE-------EeC--CCCEE-EEEeCCe
Q 004737          577 QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WNT--SGEYL-ASVSDEL  641 (732)
Q Consensus       577 ~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~----h~~~V~sla-------~sp--dg~~L-asgsDg~  641 (732)
                      ........|+|++++++++.. ++.|.++|.++++.+..+..    |..++..+-       |..  .+... ...+.+.
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~  250 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP  250 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence            566888999999999877654 67999999999987776542    444444331       221  22222 2223445


Q ss_pred             EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE----EcCCeEEEEECCCCeEEEEcc--CCCCeeEEEEeCC
Q 004737          642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI----GCYETLELWNMTENKTLTLSA--HDKLVSSLAASTV  715 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg----s~dg~I~IwDl~t~~~~~~~~--h~~~V~sla~spd  715 (732)
                      +.+||..+.   +.+..+...+.. ..+..+|+++++++.    ...+.|.++|.++.+......  ....+..+.|+++
T Consensus       251 v~v~d~~~w---kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d  326 (369)
T PF02239_consen  251 VSVHDDYAW---KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD  326 (369)
T ss_dssp             TT-STTTBT---SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred             cccchhhcC---eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence            666777666   778888877777 788889999999998    334699999999998763332  2335999999999


Q ss_pred             CCEEEEEECC--CeEEEeC
Q 004737          716 NGMVASASHD--KCVKIWK  732 (732)
Q Consensus       716 g~~LaSgs~D--G~I~IWD  732 (732)
                      |+.+..+..|  +.|.|||
T Consensus       327 G~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  327 GKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             SSEEEEEEE--TTEEEEEE
T ss_pred             CCEEEEEEecCCCEEEEEE
Confidence            9976665543  3698886

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=4.3e-14  Score=145.68  Aligned_cols=277  Identities=15%  Similarity=0.231  Sum_probs=191.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCc-
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-  526 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~-  526 (732)
                      +-.+..++|++.-..+|++..|-.|+|||-.. +....++ .-...|+|++|-|. ++.|+.|+.. -|.||..+.... 
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~  175 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA  175 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence            34577899999766789999999999999776 4444443 23467999999995 4567777765 499998763221 


Q ss_pred             ------------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEE
Q 004737          527 ------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRIL  593 (732)
Q Consensus       527 ------------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll  593 (732)
                                  .+....+| .+|+++.|.+||..++-++-.|..|.|||..++.++... ...+++.-+.|+|++.+++
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf  254 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF  254 (445)
T ss_pred             ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence                        12233455 689999999998777655557889999999999887766 4567789999999999999


Q ss_pred             EEEcCCeEEEEEC-CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCce------------eEEEee
Q 004737          594 AAAIENYISILDV-ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS  660 (732)
Q Consensus       594 ~~s~dg~I~IwDl-~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~------------~i~~~~  660 (732)
                      +++.|+..++|.. ++..+..-.. ..+.|...+|+|+|++|+....+.-++|.+.......            .+..+.
T Consensus       255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence            9999999999954 4444433333 3458999999999999888886666666654321100            111111


Q ss_pred             -----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCeEEEEc--c--CCCCeeEEEEeC---CC
Q 004737          661 -----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VN  716 (732)
Q Consensus       661 -----~----~~~~I~sl~fspdg~~L~sgs~dg--------~I~IwDl~t~~~~~~~--~--h~~~V~sla~sp---dg  716 (732)
                           .    ..+.+.+++|.|.|.++++.-..+        .|.+||....-.+.+.  +  .......|+|+|   ++
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g  413 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG  413 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence                 1    146789999999999999987655        3667777665444222  1  111244555554   34


Q ss_pred             CEEEEEECCCeEEE
Q 004737          717 GMVASASHDKCVKI  730 (732)
Q Consensus       717 ~~LaSgs~DG~I~I  730 (732)
                      .+|..+=.-|.|.-
T Consensus       414 ~lLsiaWsTGriq~  427 (445)
T KOG2139|consen  414 RLLSIAWSTGRIQR  427 (445)
T ss_pred             cEEEEEeccCceEe
Confidence            45554445555543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.3e-14  Score=154.96  Aligned_cols=277  Identities=14%  Similarity=0.166  Sum_probs=204.8

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737          448 ASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  526 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~  526 (732)
                      .|...-+.|..+|||+|+ |+|.+.-.|+|||+....+...-.-....|.-.-++.|-..++.-..|.+|.+..-....+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            467778899999999985 6777888999999987666544333345566666677766677777788887654332111


Q ss_pred             eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD  605 (732)
Q Consensus       527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwD  605 (732)
                      ..+    -...-..++++.-...+++.|+ ...|+-++++.|..+..+... +.+.++.+++..+.|++|+.+|.|..||
T Consensus       129 ~~R----IP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  129 RTR----IPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             eee----cCcCCccccccCCCccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence            111    1123345666554455664444 667999999999999988876 6799999999999999999999999999


Q ss_pred             CCCCeEEEEEc------CCCC-----CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004737          606 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  673 (732)
Q Consensus       606 l~t~~~i~~l~------~h~~-----~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp  673 (732)
                      .++...+..+.      .|.+     .|+++.|+.+|-.+++|. +|.|.|||+++..  ..+..-.....+|..+.|-+
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence            99876555443      2333     499999999999999998 9999999999874  22333334567788999977


Q ss_pred             CCCE-EEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          674 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       674 dg~~-L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .+.- .++......++|||-.+|+.+........++.+|+-|++.+++++-.++.+..|
T Consensus       282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence            6432 333334448999999999999777777779999999999999999888766543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=1.1e-14  Score=166.08  Aligned_cols=269  Identities=15%  Similarity=0.190  Sum_probs=193.9

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcC-----CCeEEEEecc-------C
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------H  491 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~-------h  491 (732)
                      ...+++|++.++..+..+..-......|+.+.+-.  |..++++|+.||.|+||+-.     +.+.+..+.+       .
T Consensus      1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~ 1164 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGA 1164 (1387)
T ss_pred             cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccC
Confidence            34679999999987766555555567899999976  55689999999999999632     2344443322       1


Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--  569 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--  569 (732)
                      .+.=.-+.|.-...+|++++.-..|+|||.+...+......+....|+++.-+-....++++|..||.|++||.+...  
T Consensus      1165 r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1165 RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred             CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc
Confidence            111134567666666777777889999999986654445555667788887766667889899999999999987643  


Q ss_pred             -eeeEEec-c--CCeeEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEEEcCCC--C-CEEEEEEeCCCCEEEEEeC
Q 004737          570 -CAGVFKC-Q--SGATQMRFQPRLG-RILAAAIENYISILDVETQVC--RLKLQGHK--N-QVHSVCWNTSGEYLASVSD  639 (732)
Q Consensus       570 -~i~~~~~-~--~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~--~-~V~sla~spdg~~LasgsD  639 (732)
                       .+...+. .  .+|..+.+.+.|- .+++++.+|.|++||++....  ...+..|.  + .++++..+++..++++|+.
T Consensus      1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred             ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence             2333332 2  2388888888654 599999999999999998422  12222232  3 5999999999999999999


Q ss_pred             CeEEEEECCCCCCceeEEE----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          640 ELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       640 g~I~IWDl~t~~~~~~i~~----~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +.|+||++..... ..++.    +....+.+.|++|+|..-.+++|..|..|.||.....
T Consensus      1325 q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1325 QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            9999999876432 11111    1122356799999999999999999999999987654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=4.7e-14  Score=158.90  Aligned_cols=234  Identities=16%  Similarity=0.093  Sum_probs=168.4

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~  548 (732)
                      ..|.+||.... ....+..+...+.+++|+||++.|+.++.+   ..|.+||+.++..  ..+..+.+...++.|+|+|+
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence            46899998644 444565677789999999999999988743   4699999987653  33344455566889999998


Q ss_pred             cEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737          549 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       549 ~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~V~  623 (732)
                      .++++.+.++  .|++||+.+++..............+|+|++.++++++. +|  .|+++|+.+++... +..+.....
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~  339 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA  339 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence            8887776666  599999998876554433334567899999999888775 34  47778887765433 222334455


Q ss_pred             EEEEeCCCCEEEEEe-C-C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737          624 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK  696 (732)
Q Consensus       624 sla~spdg~~Lasgs-D-g--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~  696 (732)
                      .++|+|||++|+..+ + +  .|.+||+.++..   . .+. +........|+|+|++++..+.++   .|+++++..+.
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            789999999998765 3 2  699999977632   1 222 222345679999999988877643   78899997766


Q ss_pred             EEEEccCCCCeeEEEEeC
Q 004737          697 TLTLSAHDKLVSSLAAST  714 (732)
Q Consensus       697 ~~~~~~h~~~V~sla~sp  714 (732)
                      ...+..+.+.+...+|+|
T Consensus       415 ~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        415 RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eEEcccCCCCCCCCccCC
Confidence            556666677788888886

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1e-13  Score=156.25  Aligned_cols=234  Identities=13%  Similarity=0.158  Sum_probs=170.1

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~  548 (732)
                      ..|.+||.+. .....+..|...+.+.+|+|||+.|+..+.   +..|.+||+.++..  +.+..+.+.+....|+|||+
T Consensus       182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence            4788889754 444556678889999999999999988764   46899999987653  44555667788999999999


Q ss_pred             cEEEEEeCCCc--EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737          549 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       549 ~llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~  623 (732)
                      .++++.+.++.  |++||+.+++...............|+|++..++.++.. |  .|++||+..+.... +..+...+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~  337 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS  337 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence            88888776665  888899887765544444446678999999998887753 3  68889988765443 333455677


Q ss_pred             EEEEeCCCCEEEEEe-C-C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 004737          624 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT  693 (732)
Q Consensus       624 sla~spdg~~Lasgs-D-g--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d------g~I~IwDl~  693 (732)
                      ...|+|||++|+... + +  .|.+||+..+.    ...+. ....+....|+|||+.|+..+.+      ..|+++|+.
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            789999999998876 2 2  68888876542    12222 22346778999999998876653      268888988


Q ss_pred             CCeEEEEccCCCCeeEEEEeCC
Q 004737          694 ENKTLTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       694 t~~~~~~~~h~~~V~sla~spd  715 (732)
                      .+....+. ..+.+...+|+|-
T Consensus       413 g~~~~~l~-~~~~~~~p~Wsp~  433 (435)
T PRK05137        413 GRNEREVP-TPGDASDPAWSPL  433 (435)
T ss_pred             CCceEEcc-CCCCccCcccCCC
Confidence            77665444 3455777788763

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=8.9e-14  Score=144.06  Aligned_cols=230  Identities=13%  Similarity=0.182  Sum_probs=178.5

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCe
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS  569 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g~I~iWDl~t~~  569 (732)
                      ...+..+.|+.+...|..|+.|| .++|+.+....... .......|.-+-|+.   .+++..+.+  ..+++++++.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCc
Confidence            34577778999999999999998 67887775443111 111223455666763   355544433  359999999999


Q ss_pred             eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEeCCCCEEEEEe---CCeEE
Q 004737          570 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR  643 (732)
Q Consensus       570 ~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~V~sla~spdg~~Lasgs---Dg~I~  643 (732)
                      .+..+.....|.++.++.+  +++++-.+ .|+|||+++.+.+.++..   +...+.++.+++.+.|++.-+   .|.|.
T Consensus        80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   80 TICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             eEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            9999888899999999864  55555544 499999999998887764   344566666666677988754   67999


Q ss_pred             EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEccC--CCCeeEEEEeCCCCEE
Q 004737          644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV  719 (732)
Q Consensus       644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~-~~~~h--~~~V~sla~spdg~~L  719 (732)
                      +||..+.   ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.++..+ .+...  ...|.+++|++++.+|
T Consensus       157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            9999887   77888889999999999999999999999999 5899999999887 44422  4568999999999999


Q ss_pred             EEEECCCeEEEeC
Q 004737          720 ASASHDKCVKIWK  732 (732)
Q Consensus       720 aSgs~DG~I~IWD  732 (732)
                      ++.+..++|+||+
T Consensus       234 ~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  234 AASSNTETVHIFK  246 (391)
T ss_pred             EEecCCCeEEEEE
Confidence            9999999999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.9e-14  Score=158.41  Aligned_cols=274  Identities=20%  Similarity=0.227  Sum_probs=196.2

Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC---CeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          454 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       454 ~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg---~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      ..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|..   .++++++.||+|++||...+. .+++
T Consensus        20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~-Llkt   97 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE-LLKT   97 (792)
T ss_pred             cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE-EEEE
Confidence            3457899999988776 4699999999999999999999999999998854   477899999999999999866 3555


Q ss_pred             eecCCcceEEEEEcCC---CCcEEEEEeCCC------------cEEEEECCCCee--eeEEeccCCeeEEEEeCCCCEEE
Q 004737          531 FTGHSTTVMSLDFHPS---KEDLLCSCDNNS------------EIRYWSINNGSC--AGVFKCQSGATQMRFQPRLGRIL  593 (732)
Q Consensus       531 l~~h~~~V~sl~fspd---g~~llaSgs~Dg------------~I~iWDl~t~~~--i~~~~~~~~i~~v~~sp~g~~ll  593 (732)
                      +..+ .++..+.+.|.   ....+..+..|.            .++-+.+.+...  ....+......++.+++. ..+.
T Consensus        98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~-ge~~  175 (792)
T KOG1963|consen   98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS-GEFK  175 (792)
T ss_pred             EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC-ceEE
Confidence            5433 23444443221   011111111111            111112111100  000011111345666665 4555


Q ss_pred             EEEcCCeEEEEECCCCeEEEE----EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC-CCCceeEEEeecCCCceE
Q 004737          594 AAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFH  667 (732)
Q Consensus       594 ~~s~dg~I~IwDl~t~~~i~~----l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t-~~~~~~i~~~~~~~~~I~  667 (732)
                      ....+..+.+|+..+......    -..|...+++.+++|++++++++. ||.|.+|.--. .........+.-|...|.
T Consensus       176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~  255 (792)
T KOG1963|consen  176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN  255 (792)
T ss_pred             EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence            666677888998887542111    123666789999999999999999 99999996443 222345566778999999


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          668 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      +++|+++|.+|++|+.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus       256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI  319 (792)
T ss_pred             eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence            9999999999999999999999999999966777788999999999999999999999988763

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2.8e-15  Score=157.57  Aligned_cols=195  Identities=23%  Similarity=0.247  Sum_probs=154.5

Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe-e
Q 004737          454 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-T  532 (732)
Q Consensus       454 ~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-~  532 (732)
                      .+++|+.||..|++|+.||++|||+......+.....|...|.++.|+|||+.|++.+.| ..+||++.++....+.. .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            679999999999999999999999998888888888899999999999999999999999 99999999885322222 2


Q ss_pred             cCCcceEEEEEcCCC---C-cEEEEEeCCCcEEEEECCCCee------eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          533 GHSTTVMSLDFHPSK---E-DLLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       533 ~h~~~V~sl~fspdg---~-~llaSgs~Dg~I~iWDl~t~~~------i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .-+.....+.|..++   . .+++.....+.|+.||+....-      ...+.....+++++++.+|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            233456677777664   2 2333334556677777643221      22223456799999999999999999999999


Q ss_pred             EEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737          603 ILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       603 IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t  649 (732)
                      ||+..+.+.+...+ .|...|+.+.|+||.+++++.+ |..+.|..+.-
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999987776554 5999999999999999999977 87888877654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.64  E-value=3.2e-14  Score=144.84  Aligned_cols=226  Identities=15%  Similarity=0.194  Sum_probs=171.9

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      +.--..+|+|.+|++|+..+|++-....|.||.....   +..+++..|...|++|+|+|..+.|++|+.|..-+||...
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~   85 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP   85 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence            3444578999999999999999999999999987654   5778899999999999999999999999999999999984


Q ss_pred             CCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---E--eccCCeeEEEEeCCCCEEEEE
Q 004737          523 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---F--KCQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       523 s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~---~--~~~~~i~~v~~sp~g~~ll~~  595 (732)
                      .+.  .+...+..++..++++.|+|.+ +.|++|+....|.||=++...-=.+   +  .....|.++.|+|++-.+++|
T Consensus        86 ~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   86 SGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            332  2334566789999999999995 6777888888888887764332211   1  133668999999999999999


Q ss_pred             EcCCeEEEEECC-----C-------------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeE
Q 004737          596 AIENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI  656 (732)
Q Consensus       596 s~dg~I~IwDl~-----t-------------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i  656 (732)
                      +.|+..+||..-     .             +..+.++....+.|..+.|+|+|..|+-.+ |..+.+-|......  .+
T Consensus       165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v  242 (361)
T KOG1523|consen  165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RV  242 (361)
T ss_pred             ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hc
Confidence            999999988642     1             122233334567899999999999999888 99999999876531  22


Q ss_pred             EEeecCCCceEEEEEeCC
Q 004737          657 HELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspd  674 (732)
                      .......-+..++.|-.+
T Consensus       243 ~~~~~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  243 QSVATAQLPLLSVSWISE  260 (361)
T ss_pred             cchhhccCCceeeEeecC
Confidence            222223355556655443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.63  E-value=8.1e-15  Score=147.03  Aligned_cols=208  Identities=21%  Similarity=0.371  Sum_probs=162.3

Q ss_pred             eEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE-EEEe-----ccCCCceEEEEEcC--CCCeEEEE
Q 004737          440 FTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTL-----EEHTQWITDVRFSP--SLSRLATS  510 (732)
Q Consensus       440 ~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~-~~~l-----~~h~~~V~~l~fsp--dg~~Lasg  510 (732)
                      +..+..+. .|-+.|.|+.|.|++..|++-. |..|.+|++..... +..+     .+|....++-+|+|  +++.+++.
T Consensus       112 lE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt  190 (370)
T KOG1007|consen  112 LECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT  190 (370)
T ss_pred             hhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence            45555565 5667999999999999998876 88999999987665 3333     23566788889998  67788776


Q ss_pred             eCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCC-eeEEEEeCC
Q 004737          511 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSG-ATQMRFQPR  588 (732)
Q Consensus       511 s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~-i~~v~~sp~  588 (732)
                       .|+++..||+++..+...+-..|...|..++|+|+...+|++|++||.|+|||.+.- ..+..+..+.. +.++.|+|.
T Consensus       191 -~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  191 -SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE  269 (370)
T ss_pred             -CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence             589999999998877666777898999999999999999999999999999999864 45555554444 899999996


Q ss_pred             CC-EEEEEEcCCeEEEEECCCC-----------------------------eEEEEEcCCCCCEEEEEEeCCCCEEE-EE
Q 004737          589 LG-RILAAAIENYISILDVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLA-SV  637 (732)
Q Consensus       589 g~-~ll~~s~dg~I~IwDl~t~-----------------------------~~i~~l~~h~~~V~sla~spdg~~La-sg  637 (732)
                      .. .+++++.|..|.+|....-                             ..+.++..|+..|++++|+.-..+++ +-
T Consensus       270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL  349 (370)
T KOG1007|consen  270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL  349 (370)
T ss_pred             cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence            54 5678888999999854211                             11335667999999999998766555 44


Q ss_pred             e-CCeEEEEECCC
Q 004737          638 S-DELVRVWSIGS  649 (732)
Q Consensus       638 s-Dg~I~IWDl~t  649 (732)
                      + ||.+.|=.+..
T Consensus       350 SYDGRviIs~V~r  362 (370)
T KOG1007|consen  350 SYDGRVIISSVPR  362 (370)
T ss_pred             ccCceEEeecCCh
Confidence            5 99988876643

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.8e-14  Score=146.78  Aligned_cols=244  Identities=16%  Similarity=0.227  Sum_probs=186.4

Q ss_pred             EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-----ceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----YSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-----~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      .+.+|.+.|.+|.|+.++.+|++|+.|..++||+++..-     +++... ..|...|.|++|... +.++++|..+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCccee
Confidence            456899999999999999999999999999999986311     123222 345689999999876 5777899999999


Q ss_pred             EEEECCCCeeeeEEeccC---CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCCCC-E
Q 004737          561 RYWSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGE-Y  633 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~---~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spdg~-~  633 (732)
                      ..-|+++.+.+.++.+..   .|..+..+|-.+.+++.+.++.|.+||.+...   ....+.........+.|+|... +
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999999888765   69999999999999999999999999998653   1222333556788899999754 5


Q ss_pred             EEEEe-CCeEEEEECCCCCCcee----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCC---
Q 004737          634 LASVS-DELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHD---  704 (732)
Q Consensus       634 Lasgs-Dg~I~IWDl~t~~~~~~----i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~---  704 (732)
                      |++.+ .+-+.+||++.......    ...+.........+.|+|.|..+++.-....-.+||+.+.++..+. .|.   
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            56666 67899999987543111    1122222334467899999998888877777788999887666443 333   


Q ss_pred             ----CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          705 ----KLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       705 ----~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                          ..|.+++|..|. .+++|+.+=.|+||+
T Consensus       290 Y~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wk  320 (609)
T KOG4227|consen  290 YCNIKTIKSMTFIDDY-TVATGSDHWGIHIWK  320 (609)
T ss_pred             ceeeeeeeeeeeecce-eeeccCcccceEEEe
Confidence                246778886554 499999999999995

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=1.4e-15  Score=169.81  Aligned_cols=278  Identities=18%  Similarity=0.203  Sum_probs=208.3

Q ss_pred             ccccCCeeeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 004737          397 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  476 (732)
Q Consensus       397 l~~~~~~v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~V  476 (732)
                      +.+|...+.|.-+|.+....+    ....|+.+++|...++.   .....+||.+.|+.++.+.+..++|+++.|..|+|
T Consensus       186 LlgH~naVyca~fDrtg~~Ii----tgsdd~lvKiwS~et~~---~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYII----TGSDDRLVKIWSMETAR---CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHhhhhheeeeeeccccceEe----ecCccceeeeeeccchh---hhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence            355666677777776655544    45667889999977775   45678999999999999999999999999999999


Q ss_pred             EEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee------cCCcceEEEEEcCCCCcE
Q 004737          477 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL  550 (732)
Q Consensus       477 Wd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~------~h~~~V~sl~fspdg~~l  550 (732)
                      |.+.++..+..+.+|++.|++|+|+|-.    +.+.||++++||.+-   ....+.      .....+.++.|...+..+
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~---~~~~y~prp~~~~~~~~~~s~~~~~~~~~f  331 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL---EPRIYVPRPLKFTEKDLVDSILFENNGDRF  331 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc---cccccCCCCCCcccccceeeeecccccccc
Confidence            9999999999999999999999999953    678899999999881   111111      122456666776665444


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737          551 LCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       551 laSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp  629 (732)
                       .+++.|++-..|.+..-.+..     ..+.-+.++.+. .+.+++-.+-.+.+|++.++.....+.+|...+..+.++|
T Consensus       332 -~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp  405 (1113)
T KOG0644|consen  332 -LTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP  405 (1113)
T ss_pred             -ccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence             499999998888765322110     011111111121 3455666678899999999999999999999999999999


Q ss_pred             CCCEEE-EEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737          630 SGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT  697 (732)
Q Consensus       630 dg~~La-sgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~  697 (732)
                      -+..++ +++ ||.+.|||+-.+.   .++.+......+....|+++|..++....-|.++|.....++.
T Consensus       406 fn~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  406 FNPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             CCcHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            766554 444 9999999998874   3333333467788899999999999998889999998765543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.4e-13  Score=152.82  Aligned_cols=235  Identities=14%  Similarity=0.061  Sum_probs=159.7

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~  548 (732)
                      ..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.++..  ..+....+.+.+..|+|||.
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            467777764 44445555677889999999999999887753   3699999987653  33333445667899999998


Q ss_pred             cEEEEEeCCCcEEEE--ECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEE--EECCCCeEEEEEcCCCCCEE
Q 004737          549 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISI--LDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       549 ~llaSgs~Dg~I~iW--Dl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~I--wDl~t~~~i~~l~~h~~~V~  623 (732)
                      .++++.+.++...+|  |+..+................|+|+|.+++.++. ++...|  +|+.++...... .+.....
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~  331 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT  331 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence            888888878875555  5554443332222334567889999999887665 344444  455555433222 2233445


Q ss_pred             EEEEeCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737          624 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK  696 (732)
Q Consensus       624 sla~spdg~~Lasgs-Dg---~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~  696 (732)
                      ..+|+|||++|+..+ ++   .|.+||+.++..    ..+.. ........|+|+++.|+.++.++   .+++.++....
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~  406 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI  406 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence            688999999998776 33   699999987632    12221 22346779999999998888665   57777775444


Q ss_pred             EEEEccCCCCeeEEEEeCC
Q 004737          697 TLTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       697 ~~~~~~h~~~V~sla~spd  715 (732)
                      ...+..+.+.+...+|+|-
T Consensus       407 ~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        407 KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             eEEeecCCCCCCCCccCCC
Confidence            4456567778888899874

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=4.1e-14  Score=152.08  Aligned_cols=245  Identities=15%  Similarity=0.193  Sum_probs=166.9

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE----EEeccCCCceEEEEEc-----CCCCeEEEEeCCCeEEEEecC
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFS-----PSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~fs-----pdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      .++...++-.|++|+..-. ..++||+...+..+    ....-.....+|-+|.     +++--|+.|-.-|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            3455555666777665432 46888887643221    1111112234455552     345567888888889998876


Q ss_pred             CCCceeEEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737          523 NPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       523 s~~~~~~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      .... .+.+    .-....|+|+.|-|.++.++..+-.+|.+++||.+-       .......+....+++..+.+....
T Consensus       204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k  275 (636)
T KOG2394|consen  204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK  275 (636)
T ss_pred             hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence            5221 1111    112478999999999889998999999999999721       111111222223344444433221


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      +.      .+..++..+.-..+.|+.++|+|||++|++.+ ||.+||||+.+.   +.+..++..-+...|++|+|||+|
T Consensus       276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy  346 (636)
T KOG2394|consen  276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY  346 (636)
T ss_pred             cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence            11      11134444444566899999999999999999 999999999886   455555556678999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeC
Q 004737          678 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST  714 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~sp  714 (732)
                      |++|++|+-|.||.+.+.+++ .-.+|+.+|+.++|.|
T Consensus       347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999999999999999999 6679999999999983

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.3e-13  Score=153.21  Aligned_cols=234  Identities=18%  Similarity=0.165  Sum_probs=161.8

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      ..+.+||...+    ..+.+..|...|.+.+|+|||+.|+..+.+   ..|++||+.+++... +..+.+...+++|+||
T Consensus       184 ~~l~i~D~~g~----~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD  258 (433)
T PRK04922        184 YALQVADSDGY----NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD  258 (433)
T ss_pred             EEEEEECCCCC----CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC
Confidence            34566665433    234456677889999999999999987743   469999998876543 3334455668899999


Q ss_pred             CCeEE-EEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEEeccC
Q 004737          504 LSRLA-TSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS  578 (732)
Q Consensus       504 g~~La-sgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~  578 (732)
                      |+.|+ +.+.+|  .|++||+.++.  ...+..+......++|+|++..++++...+|.  |+++|+.+++.........
T Consensus       259 G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~  336 (433)
T PRK04922        259 GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN  336 (433)
T ss_pred             CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence            99776 445555  59999998765  34555565566789999999888877766665  7777877766544332223


Q ss_pred             CeeEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-C--eEEEEECCCCC
Q 004737          579 GATQMRFQPRLGRILAAAIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGS  651 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg---~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-g--~I~IWDl~t~~  651 (732)
                      .....+|+|++++++..+.++   .|.+||+.++... .+. +........|+|||++|+..+ + +  .|.++++... 
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-  413 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-  413 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-
Confidence            345689999999998876543   6999999887655 333 333455779999999888766 2 2  6888887543 


Q ss_pred             CceeEEEeecCCCceEEEEEeC
Q 004737          652 KGECIHELSCTGNKFHSCVFHP  673 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fsp  673 (732)
                         ....+..+.+.+...+|+|
T Consensus       414 ---~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 ---VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ---ceEEcccCCCCCCCCccCC
Confidence               2333333445566667765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=2.1e-12  Score=131.67  Aligned_cols=233  Identities=15%  Similarity=0.229  Sum_probs=162.1

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe-CC------CeEEEEecCCC
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-AD------RTVRVWDTENP  524 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~D------g~I~IWDl~s~  524 (732)
                      ....++|+.|...+++|..+ -.+||+++..+.......+.+.+.-+..---.++|+..+ .+      ..|.|||=. .
T Consensus         7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K   84 (346)
T ss_pred             ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence            34559999999888888755 589999987655433332322222222212334555443 32      479999943 3


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEecc---CCeeEEEEeCCCCEEEEEE-cCC
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQ---SGATQMRFQPRLGRILAAA-IEN  599 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~~~~~---~~i~~v~~sp~g~~ll~~s-~dg  599 (732)
                      +.++..+. ...+|.++.+.++  .+++.-  ++.|+||... +-+.++.+...   .+..+++-......|+.-+ .-|
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence            33455544 5689999999976  344333  7789999987 55666666533   3333333333333344333 358


Q ss_pred             eEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeec--CCCceEEEEEeC
Q 004737          600 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP  673 (732)
Q Consensus       600 ~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~--~~~~I~sl~fsp  673 (732)
                      .|.|.|+...+.  ...+..|...|.|++.+-+|..+++++ .| .|||||..++   ..+.+++-  ....|++++|+|
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp  236 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP  236 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence            999999987655  467888999999999999999999999 66 6999999998   55555542  346799999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCC
Q 004737          674 TFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t  694 (732)
                      +..+|++++..|+|+||.++.
T Consensus       237 ~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  237 NSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CccEEEEEcCCCeEEEEEeec
Confidence            999999999999999998865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.6e-13  Score=150.49  Aligned_cols=235  Identities=17%  Similarity=0.136  Sum_probs=160.3

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      ..+.+||.+.+.    .+.+..+...+.+.+|||||+.|+..+.   +..|++|++.+++.... ....+.+..++|+||
T Consensus       179 ~~l~~~d~dg~~----~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPD  253 (429)
T PRK03629        179 YELRVSDYDGYN----QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPD  253 (429)
T ss_pred             eeEEEEcCCCCC----CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCC
Confidence            345555544332    2334456778999999999999887642   45799999988764432 223334557899999


Q ss_pred             CCeEEEE-eCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEEeccC
Q 004737          504 LSRLATS-SADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS  578 (732)
Q Consensus       504 g~~Lasg-s~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~  578 (732)
                      |+.|+.. +.+|  .|.+||+.++.  ...+..+...+....|+|+++.++++...++.  |+++|+.+++.........
T Consensus       254 G~~La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~  331 (429)
T PRK03629        254 GSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGS  331 (429)
T ss_pred             CCEEEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCC
Confidence            9988865 4444  58899998765  34444455678899999999888877765554  5555777665543333333


Q ss_pred             CeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC---eEEEEECCCCC
Q 004737          579 GATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGS  651 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg---~I~IWDl~t~~  651 (732)
                      ......|+|+|++++..+.+   ..|++||+.++.... +.. ........|+|||++|+..+ ++   .+.++++..  
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--  407 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--  407 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC--
Confidence            45678999999999887654   368899998886443 332 12345678999999998888 54   477788754  


Q ss_pred             CceeEEEeecCCCceEEEEEeCC
Q 004737          652 KGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                        .....+..+...+...+|+|-
T Consensus       408 --~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        408 --RFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             --CCeEECccCCCCcCCcccCCC
Confidence              334445556777888888873

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.59  E-value=2.7e-14  Score=153.05  Aligned_cols=206  Identities=14%  Similarity=0.147  Sum_probs=164.1

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEE
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  542 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~  542 (732)
                      ..|+.++.||.+.|.+ +.++....+..|.+.|.|-+|+|||.-|++++.||.|++|.-...  ...++.....+|.|++
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCAR  152 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEE
Confidence            4688888999999987 466777888999999999999999999999999999999986532  2334455667899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC
Q 004737          543 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ  621 (732)
Q Consensus       543 fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~  621 (732)
                      |.|+.+.++++.+  +.+.|=.+.....+-..+. .+-|.++.|++..+.+++|+.|-..+|||.. |..++.-..|+.+
T Consensus       153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA  229 (737)
T ss_pred             ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence            9999988887654  5666666665544445554 4558999999999999999999999999976 4556666679999


Q ss_pred             EEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          622 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       622 V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                      |++++|.|+ +.++.++-.++++=.              ...+.|..++||+||..+++|+..|.+.+
T Consensus       230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEE
Confidence            999999999 666666655555221              23467889999999999999999996554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=2.2e-13  Score=138.73  Aligned_cols=225  Identities=19%  Similarity=0.286  Sum_probs=175.5

Q ss_pred             CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC-CC
Q 004737          491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NN  567 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl-~t  567 (732)
                      -..+|+|.+|++|...+|++.....|.||......  ....++..|...|+.|+|.|..++++ +|+.|..-++|.. ..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccccCCC
Confidence            45789999999999999999999999999987665  34678899999999999999976555 9999999999998 43


Q ss_pred             Ce---eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEEcCCCCCEEEEEEeCCCCEEEEEe-C
Q 004737          568 GS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQGHKNQVHSVCWNTSGEYLASVS-D  639 (732)
Q Consensus       568 ~~---~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i----~~l~~h~~~V~sla~spdg~~Lasgs-D  639 (732)
                      ++   .+..++++..++++.|+|.++.|++++....|.||-++...--    ..-+.+...|+++.|+|++-+|++|+ |
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            33   2334556788999999999999999999999999877654321    22234678899999999999999999 9


Q ss_pred             CeEEEEECCC-----CC----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEcc
Q 004737          640 ELVRVWSIGS-----GS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLTLSA  702 (732)
Q Consensus       640 g~I~IWDl~t-----~~----------~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--~~~~~~  702 (732)
                      +..+||..--     ..          ....+.++....+.+..+.|+|+|..|+..+.|..+.+-|.....  ......
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~  247 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT  247 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh
Confidence            9999987421     10          012233444567889999999999999999999999999987765  223333


Q ss_pred             CCCCeeEEEEeCCC
Q 004737          703 HDKLVSSLAASTVN  716 (732)
Q Consensus       703 h~~~V~sla~spdg  716 (732)
                      ..-+..++.|-.+.
T Consensus       248 ~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  248 AQLPLLSVSWISEN  261 (361)
T ss_pred             ccCCceeeEeecCC
Confidence            33566677665443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.58  E-value=3.4e-11  Score=131.60  Aligned_cols=273  Identities=12%  Similarity=0.129  Sum_probs=186.0

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC----CCcEEEEEcCC--Ce--EEEEeccCCCceEEEEEcCCCCeEEEE
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH----DKKAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATS  510 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~----Dg~I~VWd~~t--~~--~~~~l~~h~~~V~~l~fspdg~~Lasg  510 (732)
                      .+..+..+. -......++++|++++|.++..    ++.|..|++..  ++  .+............++++|++++|+++
T Consensus        26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va  104 (345)
T PF10282_consen   26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA  104 (345)
T ss_dssp             EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred             CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence            344444432 2334667899999999998876    57899998775  33  333443344556789999999999998


Q ss_pred             eC-CCeEEEEecCCCCceeEE--eec-----------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eee--
Q 004737          511 SA-DRTVRVWDTENPDYSLRT--FTG-----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG--  572 (732)
Q Consensus       511 s~-Dg~I~IWDl~s~~~~~~~--l~~-----------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~--  572 (732)
                      .. +|.|.++++.........  ...           ......++.|+|+++.++++.-....|++|++....  ...  
T Consensus       105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~  184 (345)
T PF10282_consen  105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD  184 (345)
T ss_dssp             ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred             EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence            75 899999999875322221  111           224577999999998888766556689999997654  322  


Q ss_pred             E--EeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEcC------CCCCEEEEEEeCCCCEEEEEe-
Q 004737          573 V--FKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       573 ~--~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~--t~~--~i~~l~~------h~~~V~sla~spdg~~Lasgs-  638 (732)
                      .  +....+...++|+|+++++++... ++.|.+|++.  ++.  .+..+..      .......|+++|||++|+++. 
T Consensus       185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr  264 (345)
T PF10282_consen  185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR  264 (345)
T ss_dssp             EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred             ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence            2  233456889999999999888776 6789999988  442  2222221      122678999999999999887 


Q ss_pred             -CCeEEEEECCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEEc--cCCCCeeEEE
Q 004737          639 -DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTLS--AHDKLVSSLA  711 (732)
Q Consensus       639 -Dg~I~IWDl~t-~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl--~t~~~~~~~--~h~~~V~sla  711 (732)
                       ++.|.+|++.. ......+..+...+.....++++|+|++|+++..+. .|.+|++  ++|.+....  ..-....||.
T Consensus       265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~  344 (345)
T PF10282_consen  265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV  344 (345)
T ss_dssp             TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred             cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence             67999999943 233456666666667789999999999999988654 8888865  577765332  2344566666


Q ss_pred             E
Q 004737          712 A  712 (732)
Q Consensus       712 ~  712 (732)
                      |
T Consensus       345 f  345 (345)
T PF10282_consen  345 F  345 (345)
T ss_dssp             E
T ss_pred             C
Confidence            5

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.3e-12  Score=141.82  Aligned_cols=268  Identities=19%  Similarity=0.272  Sum_probs=177.5

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-----eCC-----CeEEEEe
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWD  520 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-----s~D-----g~I~IWD  520 (732)
                      ..++..+++++|+++|.+. +..|+|++..+++.+.+...-  .++++.|+|-+.+|.+=     ..+     -.+.+|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            3477889999999888765 579999999988655444333  78999999999998762     122     3577999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee-------------------
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------------  581 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~-------------------  581 (732)
                      +++ .+....+..-...-+++.|++|.. +. +--..+.|.+|++...+.+..--+..+++                   
T Consensus       112 vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l~-arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  112 VET-GVQRSQIQKKMQNGWVPQFSIDES-LA-ARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             ecc-ceehhheehhhhcCcccccccchh-hh-hhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence            998 433333332222226788887742 22 12224567777765433221111112222                   


Q ss_pred             ---------------------------------EEEEeCCCCEEEE-EEc-----------CCeEEEEECCCCeEEEEEc
Q 004737          582 ---------------------------------QMRFQPRLGRILA-AAI-----------ENYISILDVETQVCRLKLQ  616 (732)
Q Consensus       582 ---------------------------------~v~~sp~g~~ll~-~s~-----------dg~I~IwDl~t~~~i~~l~  616 (732)
                                                       .+.|++.+.-|++ ++.           +..++++++....+...+.
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~  268 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL  268 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence                                             2344444433322 221           2257777777445555554


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEE
Q 004737          617 GHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELW  690 (732)
Q Consensus       617 ~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~Iw  690 (732)
                       ..++|.+++|+++++-++++.   --++.|||++.    ..+..  ...++-+++.|+|.|++|+.+|-++   .|.||
T Consensus       269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~----~~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw  341 (566)
T KOG2315|consen  269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG----KPVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW  341 (566)
T ss_pred             -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC----CEeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence             578999999999998877765   56899999965    33433  4577888999999999999988764   89999


Q ss_pred             ECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE------CCCeEEEeC
Q 004737          691 NMTENKTLTLSAHDKLVSSLAASTVNGMVASAS------HDKCVKIWK  732 (732)
Q Consensus       691 Dl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs------~DG~I~IWD  732 (732)
                      |+.+.+++.-..- ..-+-+.|+|||.+|+|+.      .|+.++||+
T Consensus       342 Dv~n~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  342 DVPNRKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             eccchhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            9999877733222 2335579999999999987      367899995

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=2.4e-13  Score=141.77  Aligned_cols=262  Identities=15%  Similarity=0.204  Sum_probs=198.6

Q ss_pred             CCCCCeEEEEEcCCCC--EEEEEECCCcEEEEEcCCCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          448 ASTSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~--~Lasgs~Dg~I~VWd~~t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      .-...|+.++|..|++  .|...+.|..+..+.+........+      .....+|..++..  ...|++|-.+|.+.+|
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR  130 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence            3445688888887665  3444446677777777665544332      3445667666664  3478888899999999


Q ss_pred             ecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEEecc----------CCeeEEE
Q 004737          520 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQ----------SGATQMR  584 (732)
Q Consensus       520 Dl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~----------~~i~~v~  584 (732)
                      ....+.   .++..+..+ ..+..+.-++....++++|+..  ..+.+||++..+.+..-+.-          --++.+.
T Consensus       131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            988543   123333333 4577777788888999999998  89999999988655544321          1156788


Q ss_pred             EeCC--CCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE-Ee
Q 004737          585 FQPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-EL  659 (732)
Q Consensus       585 ~sp~--g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~-~~  659 (732)
                      |-+.  ...|++++..+.+++||.+.+ +++..+.-.+.+|.++...|++++|+++. -+.+..||++.+   .... .+
T Consensus       210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~  286 (412)
T KOG3881|consen  210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGL  286 (412)
T ss_pred             ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeecccc
Confidence            8887  788999999999999999976 67778877888999999999999999999 889999999987   3333 36


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCC
Q 004737          660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spd  715 (732)
                      .+..+.|.++..+|.++++++++-|..|+|+|+.+.+++.-..-...+++|.+.++
T Consensus       287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            77788999999999999999999999999999999777644444556777777554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.9e-13  Score=142.62  Aligned_cols=191  Identities=14%  Similarity=0.106  Sum_probs=148.2

Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 004737          539 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG  617 (732)
Q Consensus       539 ~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~  617 (732)
                      .+++|+.+| ..+++++.||++|+|+..... ......++..|.++.|+||+..|++.+.| ..+||+++++.++.....
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            678899885 577799999999999965544 44555678889999999999999999999 999999999977666542


Q ss_pred             --CCCCEEEEEEeCCC---CEEEEEe---CCeEEEEECCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737          618 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL  687 (732)
Q Consensus       618 --h~~~V~sla~spdg---~~Lasgs---Dg~I~IWDl~t~~~~~--~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I  687 (732)
                        ....+..+.|+.|+   .+++.+.   -+.|+.||+.......  ...........|.+++.+++|++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence              23355677888776   3443333   4577777776543211  122222334579999999999999999999999


Q ss_pred             EEEECCCCeEEE--EccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          688 ELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       688 ~IwDl~t~~~~~--~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .||+..+-+.+.  -..|...|+.+.|+||.+++++.+.|..+.|.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            999999988873  34899999999999999999998888877653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.1e-12  Score=147.78  Aligned_cols=233  Identities=12%  Similarity=0.115  Sum_probs=162.0

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      ..+.++|...+    ..+.+..|...|.+.+|+|||+.|+..+.   +..|++||+.+++.. .+..+.+.+.+.+|+||
T Consensus       182 ~~l~~~d~dg~----~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD  256 (435)
T PRK05137        182 KRLAIMDQDGA----NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD  256 (435)
T ss_pred             eEEEEECCCCC----CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence            34455554332    23456678889999999999999888764   468999999887654 44456667889999999


Q ss_pred             CCeEE-EEeCCCe--EEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccC
Q 004737          504 LSRLA-TSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQS  578 (732)
Q Consensus       504 g~~La-sgs~Dg~--I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~  578 (732)
                      |+.|+ +.+.++.  |.+||+.++.  .+.+..+........|+||++.++++...+|  .|++||+..++.........
T Consensus       257 G~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~  334 (435)
T PRK05137        257 GRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG  334 (435)
T ss_pred             CCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence            99876 4555554  7777887654  4556666666788999999988887665544  68888988766554444445


Q ss_pred             CeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-----CeEEEEECC
Q 004737          579 GATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-----ELVRVWSIG  648 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-----g~I~IWDl~  648 (732)
                      .+....|+|+++.|+....+   ..|.+||+..+.. ..+. ....+..+.|+|||+.|+...  .     ..++++|+.
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            56778999999999887654   3688899866543 3333 233567889999999887755  2     257778876


Q ss_pred             CCCCceeEEEeecCCCceEEEEEeC
Q 004737          649 SGSKGECIHELSCTGNKFHSCVFHP  673 (732)
Q Consensus       649 t~~~~~~i~~~~~~~~~I~sl~fsp  673 (732)
                      ....    ..+. ....+...+|+|
T Consensus       413 g~~~----~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        413 GRNE----REVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCce----EEcc-CCCCccCcccCC
Confidence            5421    2222 233455667765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=8.2e-13  Score=148.48  Aligned_cols=223  Identities=17%  Similarity=0.184  Sum_probs=152.0

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEE-EEeCCCeEEEEe
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD  520 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWD  520 (732)
                      .+..+...|.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+++|+|||+.|+ +.+.++...||.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            355678889999999999999887643   359999999887643 333445667899999999887 456788777776


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl--~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      ++......+.+..+...+....|+|||+.+++++..++...+|.+  .++................|+|+|++++..+.+
T Consensus       269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~  348 (427)
T PRK02889        269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV  348 (427)
T ss_pred             EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence            543222345555566666788999999888877666666666654  444433322222234567899999999887765


Q ss_pred             C---eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737          599 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF  671 (732)
Q Consensus       599 g---~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f  671 (732)
                      +   .|++||+.+++... +.. ........|+|||++|+.++  .+  .+.+.++. +   .....+..+.+.+...+|
T Consensus       349 ~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w  422 (427)
T PRK02889        349 GGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW  422 (427)
T ss_pred             CCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence            4   69999998876543 322 23446789999999988877  33  45666663 2   233334444556666777


Q ss_pred             eCC
Q 004737          672 HPT  674 (732)
Q Consensus       672 spd  674 (732)
                      +|-
T Consensus       423 sp~  425 (427)
T PRK02889        423 GPF  425 (427)
T ss_pred             CCC
Confidence            763

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=1.8e-12  Score=145.07  Aligned_cols=232  Identities=16%  Similarity=0.132  Sum_probs=161.8

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~  548 (732)
                      ..|.++|..... ...+..+...+...+|+|||++|+.++.+   ..|++||+.++..  ..+..+...+.+++|+|+++
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            368888876443 44455577789999999999999988754   4899999987653  33444556677899999998


Q ss_pred             cEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 004737          549 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       549 ~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~  623 (732)
                      .++++.+.++  .|++||+.++................|+|++.+|++++.. +  .|+++|+.+++.. .+..+...+.
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~  325 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA  325 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence            8887776554  5999999877655444433345577899999998877653 3  6888898877643 3443556677


Q ss_pred             EEEEeCCCCEEEEEe-CC---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCe
Q 004737          624 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK  696 (732)
Q Consensus       624 sla~spdg~~Lasgs-Dg---~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~  696 (732)
                      .+.|+|++++|+.+. ++   .|.+||+.++.. .   .+.. ........|+|++++|++...++   .+++++.....
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~---~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~  400 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-R---VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF  400 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-E---EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence            889999999998887 44   789999877421 1   1211 12234568999999988887765   56666765544


Q ss_pred             EEEEccCCCCeeEEEE
Q 004737          697 TLTLSAHDKLVSSLAA  712 (732)
Q Consensus       697 ~~~~~~h~~~V~sla~  712 (732)
                      ...+..+.+.+..++|
T Consensus       401 ~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       401 RARLPLGNGDVREPAW  416 (417)
T ss_pred             eeECCCCCCCcCCCCC
Confidence            4444444555555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=5.3e-13  Score=136.93  Aligned_cols=277  Identities=17%  Similarity=0.316  Sum_probs=190.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----EEEEeccC------------CCceEEEEEcCCC--CeEEEE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEH------------TQWITDVRFSPSL--SRLATS  510 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h------------~~~V~~l~fspdg--~~Lasg  510 (732)
                      .+-|.++.|..+|.+||+|..+|.|.+|.-+...     ....+..|            ...|..++|.+++  ..++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568999999999999999999999999644321     22333333            3458889998864  467778


Q ss_pred             eCCCeEEEEecCCCCcee----------------------------------EE-eecCCcceEEEEEcCCCCcEEEEEe
Q 004737          511 SADRTVRVWDTENPDYSL----------------------------------RT-FTGHSTTVMSLDFHPSKEDLLCSCD  555 (732)
Q Consensus       511 s~Dg~I~IWDl~s~~~~~----------------------------------~~-l~~h~~~V~sl~fspdg~~llaSgs  555 (732)
                      +.|++|++|.+.......                                  +. -.+|+-.|.+|.++.|...++ +++
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence            899999999886432111                                  11 135888899999999987766 554


Q ss_pred             CCCcEEEEECCCCe-eeeEEec--------cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE------EEE-----
Q 004737          556 NNSEIRYWSINNGS-CAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC------RLK-----  614 (732)
Q Consensus       556 ~Dg~I~iWDl~t~~-~i~~~~~--------~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~------i~~-----  614 (732)
                       |-.|.+|+++--. +......        ..-|++..|+|.. +.++..+..|.|++.|++....      +..     
T Consensus       184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence             8889999986432 2222221        1237888999964 5677788899999999984321      111     


Q ss_pred             -----EcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC------------C---ceEEEEEeCC
Q 004737          615 -----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------N---KFHSCVFHPT  674 (732)
Q Consensus       615 -----l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~------------~---~I~sl~fspd  674 (732)
                           +.+--..|..+.|+++|+|+++-+--+|++||+....  .++.++..|.            .   .-..|+|+-+
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~  340 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN  340 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence                 1112246788999999999998877899999996543  3344433332            1   2356899999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE--EEc--------------------cC-------------CCCeeEEEEeCCCCEE
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV  719 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~--~~~--------------------~h-------------~~~V~sla~spdg~~L  719 (732)
                      +.++++|+....+++|+...|...  ++.                    +.             ...|...+|+|..+.|
T Consensus       341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i  420 (433)
T KOG1354|consen  341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI  420 (433)
T ss_pred             cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence            999999999999999996544322  000                    00             1125566899999999


Q ss_pred             EEEECCCeEEEe
Q 004737          720 ASASHDKCVKIW  731 (732)
Q Consensus       720 aSgs~DG~I~IW  731 (732)
                      |.+.... +.||
T Consensus       421 a~aatnn-lyif  431 (433)
T KOG1354|consen  421 AVAATNN-LYIF  431 (433)
T ss_pred             eeeecCc-eEEe
Confidence            8887654 4443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.54  E-value=6.7e-11  Score=129.32  Aligned_cols=267  Identities=14%  Similarity=0.180  Sum_probs=182.2

Q ss_pred             EEEEECC----CcEEEEEc--CCCeEE--EEeccCCCceEEEEEcCCCCeEEEEeC----CCeEEEEecCCCCcee---E
Q 004737          465 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL---R  529 (732)
Q Consensus       465 Lasgs~D----g~I~VWd~--~t~~~~--~~l~~h~~~V~~l~fspdg~~Lasgs~----Dg~I~IWDl~s~~~~~---~  529 (732)
                      +++|+..    +.|.+|++  ++++..  ..+. .......++++|++++|+++..    ++.|..|++......+   .
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4556655    68888877  455443  2222 3345678899999999999877    5799999988752122   2


Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE---Ee-----------ccCCeeEEEEeCCCCEEEE
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILA  594 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~---~~-----------~~~~i~~v~~sp~g~~ll~  594 (732)
                      ...........++++|+++.++++...+|.|.++++.. +.....   +.           ......++.++|+++++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            22223445678999999988888888899999999987 443332   21           1234789999999999988


Q ss_pred             EEc-CCeEEEEECCCCe--E--EEEEc-CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC-CceeEEEeecC---
Q 004737          595 AAI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT---  662 (732)
Q Consensus       595 ~s~-dg~I~IwDl~t~~--~--i~~l~-~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~-~~~~i~~~~~~---  662 (732)
                      ... ...|.+|++....  .  ...+. ......+.++|+|+++++++..  ++.|.+|++.... ....+..+...   
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            776 4689999997654  2  22222 2445678999999999998887  7899999998221 22333333221   


Q ss_pred             ---CCceEEEEEeCCCCEEEEEEcC-CeEEEEECC--CCeEE---EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737          663 ---GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  732 (732)
Q Consensus       663 ---~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~--t~~~~---~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD  732 (732)
                         ......++++||+++|+++... +.|.+|++.  ++++.   .+.........++++|++++|+++. .++.|.+|+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence               1257889999999999888754 489999983  34443   2223345689999999999999887 566888874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=1.5e-14  Score=153.10  Aligned_cols=228  Identities=16%  Similarity=0.195  Sum_probs=190.8

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  573 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~  573 (732)
                      .-+.+.|+.+|++|+.|+..|.|-.+|+.+... ...+ .-...|.++.|..+ +.++|++ ....++|||-. |..++.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei-~v~Etv~Dv~~LHn-eq~~AVA-QK~y~yvYD~~-GtElHC  205 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEI-NVMETVRDVTFLHN-EQFFAVA-QKKYVYVYDNN-GTELHC  205 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeeccccee-eeee-ehhhhhhhhhhhcc-hHHHHhh-hhceEEEecCC-CcEEee
Confidence            356789999999999999999999999998764 2222 23467889999876 4566454 47789999965 778888


Q ss_pred             EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      ++....+..+.|-|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+-.+-+|. .|+|.+|.....  
T Consensus       206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--  283 (545)
T KOG1272|consen  206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--  283 (545)
T ss_pred             hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--
Confidence            88889999999999977788888899999999999999999988889999999999999999888 999999999876  


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                       +++..+-+|.++|.++++.++|.|+++++.|..++|||++....+ ++.. ......++||..|  +++++....|.||
T Consensus       284 -ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  284 -EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             -chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence             677788899999999999999999999999999999999988765 3333 4567788888655  4555666689999


Q ss_pred             C
Q 004737          732 K  732 (732)
Q Consensus       732 D  732 (732)
                      .
T Consensus       360 ~  360 (545)
T KOG1272|consen  360 K  360 (545)
T ss_pred             h
Confidence            4

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=6e-12  Score=141.68  Aligned_cols=234  Identities=15%  Similarity=0.051  Sum_probs=163.4

Q ss_pred             cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc
Q 004737          473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  549 (732)
Q Consensus       473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~  549 (732)
                      .|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+   ..|.+||+.++..  +.+....+.+....|+|+|+.
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence            477888775543 4455577789999999999999877654   3689999987653  333334445667899999988


Q ss_pred             EEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737          550 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS  624 (732)
Q Consensus       550 llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~V~s  624 (732)
                      ++++...++  .|++||+.+++...............|+|+++.++..+..   ..|+++|+.+++...... .......
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~  335 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR  335 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence            887776665  6888899988765544444446678999999988877653   368888988776433222 2233446


Q ss_pred             EEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 004737          625 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT  697 (732)
Q Consensus       625 la~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~  697 (732)
                      ..|+|+|++|+...  ++  .|.+||+.++.. ..+   .. ........|+|+|+.++..+.++   .|+++++.....
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            78999999998876  33  588899887632 222   11 11223558999999998877653   688888876655


Q ss_pred             EEEccCCCCeeEEEEeCC
Q 004737          698 LTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       698 ~~~~~h~~~V~sla~spd  715 (732)
                      ..+..+.+.+...+|+|-
T Consensus       411 ~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        411 LPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EECcCCCCCcCCCccCCC
Confidence            555556667788888863

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=4.7e-12  Score=129.21  Aligned_cols=230  Identities=13%  Similarity=0.180  Sum_probs=168.5

Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCC
Q 004737          495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINN  567 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t  567 (732)
                      ...++|+-|...+++|..+| .+||+++--+... +.+....-.+..+-|-.  +.+...|+.+      ..|.|||-..
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEeccc
Confidence            45599999999999997766 8999987532211 11111112233333332  3455555543      4799999888


Q ss_pred             CeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe--CCeE
Q 004737          568 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGH--KNQVHSVCWNTSGEYLASVS--DELV  642 (732)
Q Consensus       568 ~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h--~~~V~sla~spdg~~Lasgs--Dg~I  642 (732)
                      .+++..+....+|..+.+.++   .++.-.++.|+||.... .+.++.+...  ...+.+++-..+..+|+.-+  -|.|
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence            899999999999999999986   45556679999999874 4555555432  23344444333455666655  7899


Q ss_pred             EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEc--cCCCCeeEEEEeCCCCE
Q 004737          643 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNGM  718 (732)
Q Consensus       643 ~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~-~~~--~h~~~V~sla~spdg~~  718 (732)
                      .|-|+...... .-..+..|...|.+++..-+|..+|+++..| -|+|||..+|..+ .+.  .....|.+|+|||+..+
T Consensus       162 Qi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~  240 (346)
T KOG2111|consen  162 QIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW  240 (346)
T ss_pred             EEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence            99999875331 2356788999999999999999999999999 5899999999988 443  34568999999999999


Q ss_pred             EEEEECCCeEEEe
Q 004737          719 VASASHDKCVKIW  731 (732)
Q Consensus       719 LaSgs~DG~I~IW  731 (732)
                      |+++|+.|+|+||
T Consensus       241 LavsSdKgTlHiF  253 (346)
T KOG2111|consen  241 LAVSSDKGTLHIF  253 (346)
T ss_pred             EEEEcCCCeEEEE
Confidence            9999999999997

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.51  E-value=1.6e-12  Score=151.07  Aligned_cols=251  Identities=16%  Similarity=0.218  Sum_probs=173.6

Q ss_pred             EEcCCCeEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCc------eeEEeecCCcceEEEEEcCCCCc
Q 004737          477 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED  549 (732)
Q Consensus       477 Wd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~------~~~~l~~h~~~V~sl~fspdg~~  549 (732)
                      |+. .|..+..+..|...|..++.+++. .+|++|+.||+|++||...-..      ...++......+.++.+.+.+..
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 467888889999999999998755 9999999999999999874221      12234445678999999988755


Q ss_pred             EEEEEeCCCcEEEEECCCCe-------eeeEEe--ccCCeeEE-EEeCC-CC-EEEEEEcCCeEEEEECCCCeEEEEEc-
Q 004737          550 LLCSCDNNSEIRYWSINNGS-------CAGVFK--CQSGATQM-RFQPR-LG-RILAAAIENYISILDVETQVCRLKLQ-  616 (732)
Q Consensus       550 llaSgs~Dg~I~iWDl~t~~-------~i~~~~--~~~~i~~v-~~sp~-g~-~ll~~s~dg~I~IwDl~t~~~i~~l~-  616 (732)
                      ++ .++.||.|++.+++...       +.+...  ..+.+..+ +|... .. .++.+...+.|..||+++.....+++ 
T Consensus      1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            55 66889999999987521       111111  22233332 33322 23 57777888999999999876555444 


Q ss_pred             -CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-cCCCceEEEEEeCCC---CEEEEEEc--CCeEE
Q 004737          617 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTF---PSLLVIGC--YETLE  688 (732)
Q Consensus       617 -~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~~~~~I~sl~fspdg---~~L~sgs~--dg~I~  688 (732)
                       ...+.|++++.+|.+.+++.|. .|.+.+||++-.   ..+..+. .+..++..+..+|-.   ...++++.  .+.|.
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence             2457899999999999999999 899999999876   4444433 334667777666644   34554444  56899


Q ss_pred             EEECCCCeEE-EEccC-------------------CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          689 LWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       689 IwDl~t~~~~-~~~~h-------------------~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|++.++... .+...                   .-....+++...+.++++|+.|..|+.||
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            9999988544 11111                   11122333444466999999999999998

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=1.3e-12  Score=136.30  Aligned_cols=236  Identities=16%  Similarity=0.172  Sum_probs=183.2

Q ss_pred             CCceEEEEEcCCCC--eEEEEeCCCeEEEEecCCCCceeE-----EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737          492 TQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       492 ~~~V~~l~fspdg~--~Lasgs~Dg~I~IWDl~s~~~~~~-----~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD  564 (732)
                      ...|+.++|.-++.  .|+.++.|..+..+.+......-.     .......+|..+...   +..|++|-.+|.+.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEEe
Confidence            45677788866543  455555677777777765543211     334455677777665   23455888899999999


Q ss_pred             CCCCe----eeeEEeccCCeeEEEEeCCCCEEEE-EEcC--CeEEEEECCCCeEEEEEcCC---------CCCEEEEEEe
Q 004737          565 INNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCWN  628 (732)
Q Consensus       565 l~t~~----~i~~~~~~~~i~~v~~sp~g~~ll~-~s~d--g~I~IwDl~t~~~i~~l~~h---------~~~V~sla~s  628 (732)
                      .+.+.    .+..+....++..+.-++...+|++ |+..  ..+.|||++..+.+..-+.-         .-+++++.|-
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            98433    3444555677777887777666665 7777  78999999988766654432         2256788998


Q ss_pred             CC--CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccC
Q 004737          629 TS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAH  703 (732)
Q Consensus       629 pd--g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h  703 (732)
                      +.  ...|+++. -+.|++||.+...  +++..+.....++.++...|++++|+++..-+.+..||++.++..  .+.+.
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            87  78889888 8999999999654  678888888999999999999999999999999999999999988  47789


Q ss_pred             CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          704 DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       704 ~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+.|++|..+|...+|++|+-|..|+|+|
T Consensus       290 tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             cCCcceEEEcCCCceEEeeccceeEEEee
Confidence            99999999999999999999999999997

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.50  E-value=2.4e-11  Score=133.41  Aligned_cols=264  Identities=10%  Similarity=0.050  Sum_probs=172.1

Q ss_pred             CEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737          463 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  541 (732)
Q Consensus       463 ~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl  541 (732)
                      +++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+ .+..+... ....++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-~v~~i~~G-~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-VVATIKVG-GNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-EEEEEE-S-SEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-EEEEEecC-CCcceE
Confidence            344 455568999999999999999998665544557899999999999999999999999977 45555543 346889


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--------CCeeEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR  612 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--------~~i~~v~~sp~g~~ll~~s~d-g~I~IwDl~t~~~i  612 (732)
                      ++++||+++++++...+.+.++|.++.+.+..+...        ..+..+..++....+++.-.| +.|.+.|....+.+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            999999999988889999999999999998877632        246677778888877777665 89999998765322


Q ss_pred             -EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec----CCCceEEE-------EE--eCCCC
Q 004737          613 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC-------VF--HPTFP  676 (732)
Q Consensus       613 -~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl-------~f--spdg~  676 (732)
                       ..............|+|+++|++++.  ++.|-++|..+.   +.+..+..    |..+...+       .|  ...+.
T Consensus       164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~  240 (369)
T PF02239_consen  164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGY  240 (369)
T ss_dssp             EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSS
T ss_pred             ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccccCCCcceEEeeccccc
Confidence             22323456778899999999988876  779999999876   33333221    22222222       12  12223


Q ss_pred             EEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE----ECCCeEEEeC
Q 004737          677 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK  732 (732)
Q Consensus       677 ~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg----s~DG~I~IWD  732 (732)
                      ..+..-..+.+.+||....+.+ .+...... ..+..+|++++|+..    ...+.|.|+|
T Consensus       241 ~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD  300 (369)
T PF02239_consen  241 FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID  300 (369)
T ss_dssp             SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred             eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence            3323333345667888888888 44444444 788889999999988    3446787775

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.2e-12  Score=133.20  Aligned_cols=229  Identities=16%  Similarity=0.182  Sum_probs=162.2

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----  568 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~----  568 (732)
                      ..+..++|++.-..+|++..|-.|++||-.. +.+..........|+|++|-|.+...++.|... -|.+|.....    
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            3477889998777788999999999999876 332333333456899999999988888777754 5999976421    


Q ss_pred             e--------eeeEEe--ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 004737          569 S--------CAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       569 ~--------~i~~~~--~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasg  637 (732)
                      .        +...++  .+..|+++.|.+||..+++++. +..|.|||..++..+.......+.+.-+.|+||+.+|+++
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence            1        112222  3456999999999999998876 5799999999987766554456788999999999999998


Q ss_pred             e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCe----------EE-------
Q 004737          638 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENK----------TL-------  698 (732)
Q Consensus       638 s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~----------~~-------  698 (732)
                      . |+..++|.....-  .+. ......+.|...+|+|+|++|+.+.... .|+-.......          ..       
T Consensus       257 t~davfrlw~e~q~w--t~e-rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  257 TCDAVFRLWQENQSW--TKE-RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             cccceeeeehhcccc--eec-ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence            8 9999999654321  122 2223345899999999999877665543 33322221110          11       


Q ss_pred             --EEcc----CCCCeeEEEEeCCCCEEEEEECCC
Q 004737          699 --TLSA----HDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       699 --~~~~----h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                        +...    ..+.+.+++|.|.|.+||+.-..+
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence              1111    146789999999999999876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=1.5e-12  Score=140.19  Aligned_cols=169  Identities=18%  Similarity=0.259  Sum_probs=131.2

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCeEEEEe----ccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCC---------
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD---------  525 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l----~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~---------  525 (732)
                      +++--|+.|-.-|.|.+.|....+..+.+    .-....|+|+.|-|. ...|+++-.+|.+.+||.....         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            45556778888889999887653222212    123478999999984 4567777789999999764110         


Q ss_pred             ------------------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEe
Q 004737          526 ------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQ  586 (732)
Q Consensus       526 ------------------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~s  586 (732)
                                        .++..+.-..+.|..++|+||| .+||+.+.||.+||||..+.+++..++ ..++..|++|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                              0111222234578899999986 566688899999999999888776665 35789999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737          587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp  629 (732)
                      |||++|++|+.|.-|.||.+...+.+..-.+|+.+|..|+|+|
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999999999999999999999999999999999999999997

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=9e-12  Score=140.75  Aligned_cols=233  Identities=15%  Similarity=0.098  Sum_probs=158.5

Q ss_pred             cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC-C--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc
Q 004737          473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  549 (732)
Q Consensus       473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~  549 (732)
                      .|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.++..  ..+....+......|+|||+.
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence            677778765443 4455567789999999999998877543 2  688899987653  223322334457899999998


Q ss_pred             EEEEEeCCCc--EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-C--CeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737          550 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHS  624 (732)
Q Consensus       550 llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-d--g~I~IwDl~t~~~i~~l~~h~~~V~s  624 (732)
                      ++++.+.++.  |++||+.+++..............+|+|++++++..+. +  ..|+++|+.+++.... .........
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~  354 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG  354 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence            8888777775  88889988776544443344677899999999887765 3  3577888887764432 212233446


Q ss_pred             EEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 004737          625 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT  697 (732)
Q Consensus       625 la~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~  697 (732)
                      .+|+|||++|+..+  ++  .|.++|+.++.. .   .+... .......|+|+|+.|+....++   .|++++......
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~---~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~  429 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-Q---VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK  429 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCe-E---EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            79999999988876  34  566678776532 1   12211 1222458999999888876654   488888865555


Q ss_pred             EEEccCCCCeeEEEEeC
Q 004737          698 LTLSAHDKLVSSLAAST  714 (732)
Q Consensus       698 ~~~~~h~~~V~sla~sp  714 (732)
                      ..+..+.+.+...+|+|
T Consensus       430 ~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        430 ARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EECcCCCCCcCCCccCC
Confidence            56656667788888887

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.49  E-value=5.4e-13  Score=132.70  Aligned_cols=273  Identities=15%  Similarity=0.195  Sum_probs=183.0

Q ss_pred             eeccccCCceeeccCCCCCCCCCceeeeeecCCCceeEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC
Q 004737          404 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  482 (732)
Q Consensus       404 v~~gs~d~~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~  482 (732)
                      +.+..++++-+++     +.....++.+|...+..   .+..++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++...
T Consensus        17 v~s~~fqa~~rL~-----sg~~~G~V~~w~lqt~r---~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s   87 (323)
T KOG0322|consen   17 VTSVLFQANERLM-----SGLSVGIVKMWVLQTER---DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYS   87 (323)
T ss_pred             heehhhccchhhh-----cccccceEEEEEeecCc---cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCc
Confidence            3444444444443     33445678888877764   455677 67888999999987 57888899999999999875


Q ss_pred             eEEEEeccCCCceEEEEEcC-----CCC----eEEEEeCCC-eEEEEecCCCCceeEEe----ecCCcceEEEEEcC--C
Q 004737          483 TVKSTLEEHTQWITDVRFSP-----SLS----RLATSSADR-TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHP--S  546 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fsp-----dg~----~Lasgs~Dg-~I~IWDl~s~~~~~~~l----~~h~~~V~sl~fsp--d  546 (732)
                      ..+..   |.-.++++.|.+     .++    .++.-+... .+.+-|..... .+...    .+..+.++|..+.-  .
T Consensus        88 ~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   88 AFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccccc
Confidence            54432   333344444433     111    111111110 01222222111 01111    12345677777543  2


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeeEE-----------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--e--E
Q 004737          547 KEDLLCSCDNNSEIRYWSINNGSCAGVF-----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V--C  611 (732)
Q Consensus       547 g~~llaSgs~Dg~I~iWDl~t~~~i~~~-----------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~--~--~  611 (732)
                      ...++++|..+|.|.+||+.++..+..+           .+..++.++.|.+.-..=+.++.+..+..|.+...  .  .
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence            3456778889999999999987433222           24567888999876666677777888888887643  1  1


Q ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      ...+.-..-.|..+.+-||++++++++ |+.||||+.++.   ..+..+..|...|.+++|+|+...+++++.|..|.+|
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLW  320 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLW  320 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEee
Confidence            122222344688899999999999999 999999999988   7788888899999999999999999999999999999


Q ss_pred             EC
Q 004737          691 NM  692 (732)
Q Consensus       691 Dl  692 (732)
                      ++
T Consensus       321 kL  322 (323)
T KOG0322|consen  321 KL  322 (323)
T ss_pred             ec
Confidence            86

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.48  E-value=2.1e-12  Score=132.79  Aligned_cols=251  Identities=16%  Similarity=0.270  Sum_probs=190.1

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV  516 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I  516 (732)
                      .+..+..++||.+.|++...-|...-+++.+.|.+++||-- +.++....+. .-..+++++.+.++...|++|-..|++
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv   92 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV   92 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence            33456678999999999999998888999999999999953 3455444442 234678999999999999999999999


Q ss_pred             EEEecCCC---CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEE
Q 004737          517 RVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL  593 (732)
Q Consensus       517 ~IWDl~s~---~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll  593 (732)
                      .-+.+...   ....+.+..|...|..+.|+..- ..+++++.|..+.---.+.+..+..+......+++.+.-.  +.+
T Consensus        93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~f  169 (404)
T KOG1409|consen   93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAF  169 (404)
T ss_pred             EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEE
Confidence            98876532   12356778899999999998764 4555788787665444455554443333333333333322  556


Q ss_pred             EEEcCCeEEEEEC--CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737          594 AAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       594 ~~s~dg~I~IwDl--~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~  670 (732)
                      +|...|.|.+..+  ..-..+.++.+|.+.+++++|.+....|++|. |..|.+||+....  ....++.+|...|..+.
T Consensus       170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQALS  247 (404)
T ss_pred             ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhhh
Confidence            6666776666544  44577889999999999999999999999998 8899999997653  45667788899999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCC
Q 004737          671 FHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       671 fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      ..+.-+.+++++.|+.|.+||++.
T Consensus       248 ~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  248 YAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhheeeeeccCCCeEEEEeccc
Confidence            888888999999999999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=2.5e-13  Score=146.13  Aligned_cols=216  Identities=19%  Similarity=0.267  Sum_probs=158.4

Q ss_pred             eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEE
Q 004737          483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIR  561 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~  561 (732)
                      .....+.+|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.....-.+|...|.++.|-|. ++.++++|..|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            3345688999999999999999999999999999999998766655677899999999999985 467888999999999


Q ss_pred             EEECCCCe----------eeeEEe-ccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE-E------E---EEcCCC
Q 004737          562 YWSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-R------L---KLQGHK  619 (732)
Q Consensus       562 iWDl~t~~----------~i~~~~-~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~-i------~---~l~~h~  619 (732)
                      +||+...+          ....+. +...|..++..|++ ..+.+++.||+|+-||++.... .      .   .+...-
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            99997421          222222 22457778888888 6788999999999999986321 1      1   111122


Q ss_pred             CCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCC---------------ceeEEEeec-C--------C---CceEEEE
Q 004737          620 NQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---------------GECIHELSC-T--------G---NKFHSCV  670 (732)
Q Consensus       620 ~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~---------------~~~i~~~~~-~--------~---~~I~sl~  670 (732)
                      -...|+.++|.. .+|++|+ |-..++||.+...+               ..|+.-+.. |        .   ..++-+.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt  280 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT  280 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence            356789999965 5677777 77999999532110               012222211 1        1   1245678


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          671 FHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       671 fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      |+|+|.-|++.-....|+++|+..++..
T Consensus       281 fnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  281 FNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence            9999988888877789999999887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2.8e-11  Score=136.24  Aligned_cols=222  Identities=17%  Similarity=0.166  Sum_probs=151.2

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEE-EeCCC--eEE
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR  517 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg--~I~  517 (732)
                      +.+..|...+....|+|||+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.++  .|.
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            4455677889999999999999877644   369999999876543 3333445667899999998874 44454  688


Q ss_pred             EEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737          518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       518 IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~  595 (732)
                      +||+.++.  ...+..+........|+|+++.++++...++  .|+++|+.+++...............|+|+++.++..
T Consensus       271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence            88998765  3445556666778899999988887776554  5777888877754433222234457899999999887


Q ss_pred             EcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEE
Q 004737          596 AIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS  668 (732)
Q Consensus       596 s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~s  668 (732)
                      ..+ +  .|.+||+.+++... +. +........|+|||+.|+..+  ++  .|.++++...    ....+....+.+..
T Consensus       349 ~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~  422 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE  422 (430)
T ss_pred             EccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence            754 3  58899998876533 22 122233568999999988776  33  5777777543    22233334455666


Q ss_pred             EEEeCC
Q 004737          669 CVFHPT  674 (732)
Q Consensus       669 l~fspd  674 (732)
                      .+|+|-
T Consensus       423 p~ws~~  428 (430)
T PRK00178        423 PSWSPY  428 (430)
T ss_pred             CccCCC
Confidence            667653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=7.6e-12  Score=135.73  Aligned_cols=238  Identities=15%  Similarity=0.182  Sum_probs=171.3

Q ss_pred             cCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737          490 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  568 (732)
Q Consensus       490 ~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~  568 (732)
                      +|....+.|..+|||.|+ |+|.+.-.|++||+.+-.  ++.-......+..+....++-.-++.-..|.+|-+-.-.  
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~--  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--  124 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhc--
Confidence            477788999999999985 566677899999998733  333332233444443333322222233346666554322  


Q ss_pred             eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737          569 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI  647 (732)
Q Consensus       569 ~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl  647 (732)
                      -....+..+..-..++++.-..-|++++....|+-++++.|..+..+....+.+++|..++-..+|++|. +|.|.+||.
T Consensus       125 G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp  204 (703)
T KOG2321|consen  125 GRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP  204 (703)
T ss_pred             CeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence            2223333445556677776667788899999999999999999988888889999999999999999999 999999999


Q ss_pred             CCCCCceeEE---EeecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCC--CCeeEEEEeCC--
Q 004737          648 GSGSKGECIH---ELSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV--  715 (732)
Q Consensus       648 ~t~~~~~~i~---~~~~~~-----~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~--~~V~sla~spd--  715 (732)
                      ++......+.   .+..+.     ..|+++.|+.+|-.+++|+.+|.|+|||++..+++....|.  -+|..+.|-+.  
T Consensus       205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~  284 (703)
T KOG2321|consen  205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ  284 (703)
T ss_pred             hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence            8864322221   111222     24999999999999999999999999999999999777775  47888888665  


Q ss_pred             CCEEEEEECCCeEEEeC
Q 004737          716 NGMVASASHDKCVKIWK  732 (732)
Q Consensus       716 g~~LaSgs~DG~I~IWD  732 (732)
                      ...|+++ +...++|||
T Consensus       285 q~~v~S~-Dk~~~kiWd  300 (703)
T KOG2321|consen  285 QNKVVSM-DKRILKIWD  300 (703)
T ss_pred             CceEEec-chHHhhhcc
Confidence            3466665 446789997

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.43  E-value=7.3e-13  Score=135.12  Aligned_cols=219  Identities=18%  Similarity=0.236  Sum_probs=158.6

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737          497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-  575 (732)
Q Consensus       497 ~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-  575 (732)
                      -++|+|+|+++|+++.- .+.|-|.++-+  +..+...-+.|.-+.|..+...+++....++.|.+|++...+-...+. 
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq--~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ--LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhh--HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence            46899999999999755 77777777643  222222245788899999989999999999999999999888776665 


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCC
Q 004737          576 CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG  650 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~  650 (732)
                      ...++..++|+|+|+.++..+. +-.|.+|.+.+.+....-. .+..+..++|+|||++.+.++  |.  .+.|....  
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~--  166 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK--  166 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-cccCceeEEECCCCceeeeeecccHHHHHHHHhhH--
Confidence            4567899999999988776554 8899999999887654322 345678999999999999888  33  23333222  


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                       ....+.++....-..+.+.|+|||..|++         ||..-.-.+-.....-.+..++|+|.+++|+.|+.|+.++|
T Consensus       167 -~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  167 -AWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             -HHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhh
Confidence             22344455555566788999999996654         44221111111122346888999999999999999999887


Q ss_pred             e
Q 004737          731 W  731 (732)
Q Consensus       731 W  731 (732)
                      -
T Consensus       237 l  237 (447)
T KOG4497|consen  237 L  237 (447)
T ss_pred             h
Confidence            3

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.2e-12  Score=139.59  Aligned_cols=268  Identities=15%  Similarity=0.191  Sum_probs=205.5

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCC-CeE--EEEeccCCCceE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES-FTV--KSTLEEHTQWIT  496 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t-~~~--~~~l~~h~~~V~  496 (732)
                      ..+.|+.+.+|+|.++..  ......+|...|.-..|-|  +...|++++.||.|++=.+.. +.+  ...+..|.++|.
T Consensus       159 SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vh  236 (559)
T KOG1334|consen  159 SGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVH  236 (559)
T ss_pred             ccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccc
Confidence            566788999999999864  2344568999999999988  456799999999999987653 322  355677999999


Q ss_pred             EEEEcCCC-CeEEEEeCCCeEEEEecCCCCce--eEEeecCCc---ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          497 DVRFSPSL-SRLATSSADRTVRVWDTENPDYS--LRTFTGHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       497 ~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~--~~~l~~h~~---~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      .++.-|+. .-|.+++.|+.+.-+|++.....  +.....+..   ....|+..|...+.+++++.|-.+++||.+.-..
T Consensus       237 klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~  316 (559)
T KOG1334|consen  237 KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK  316 (559)
T ss_pred             eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence            99999964 46899999999999999865421  112222333   5688999999888999999999999999864221


Q ss_pred             e------eEE-------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC--C----------eEE-EEEcCCCC--CE
Q 004737          571 A------GVF-------KCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q----------VCR-LKLQGHKN--QV  622 (732)
Q Consensus       571 i------~~~-------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t--~----------~~i-~~l~~h~~--~V  622 (732)
                      .      ..+       ...-.|++++|+.++..++++..|-.|++|.-.-  +          ..+ ..+++|..  .|
T Consensus       317 e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TV  396 (559)
T KOG1334|consen  317 EENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTV  396 (559)
T ss_pred             ccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccc
Confidence            1      111       1234589999999999999999999999995432  1          112 23677765  46


Q ss_pred             EEEEE-eCCCCEEEEEeC-CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          623 HSVCW-NTSGEYLASVSD-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       623 ~sla~-spdg~~LasgsD-g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      .++-| -|...|+++|+| |.|.||+-.++   +.+..+.+...-|+|+.-+|.-..|++++-|..|+||--.+
T Consensus       397 KgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  397 KGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             ceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            67755 578899999995 69999999887   66666666677899999999999999999999999997643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=6.4e-11  Score=133.89  Aligned_cols=220  Identities=18%  Similarity=0.194  Sum_probs=147.2

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEE-EeCCCe--EEE
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV  518 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Las-gs~Dg~--I~I  518 (732)
                      .+..+...+.+..|+|||+.|+..+.+   ..|++||+.+++... +....+.....+|+|||+.|+. .+.++.  |.+
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~  290 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV  290 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence            455667789999999999998876543   258899998876533 2222334457899999998775 455664  777


Q ss_pred             EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE
Q 004737          519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      ||+.++.  .+.+..+.......+|+||+..++++...++  .|+++|+.+++..............+|+|++++++..+
T Consensus       291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN  368 (448)
T ss_pred             EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence            7887654  4455556566788999999988887776555  46677887776544322222234578999999988876


Q ss_pred             cC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737          597 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC  669 (732)
Q Consensus       597 ~d-g--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl  669 (732)
                      .+ +  .|.++|+.++.... +... .......|+|||+.|+...  ++  .+++++...    .....+....+.+...
T Consensus       369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p  442 (448)
T PRK04792        369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP  442 (448)
T ss_pred             ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence            54 3  56778888876533 2222 1223458999999887766  44  477777643    2333444445556677


Q ss_pred             EEeC
Q 004737          670 VFHP  673 (732)
Q Consensus       670 ~fsp  673 (732)
                      +|+|
T Consensus       443 ~Wsp  446 (448)
T PRK04792        443 AWSP  446 (448)
T ss_pred             ccCC
Confidence            7776

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.41  E-value=1.5e-10  Score=124.49  Aligned_cols=273  Identities=16%  Similarity=0.229  Sum_probs=194.4

Q ss_pred             CCeEEEEEcCCCCEEEEEECCC---------------cEEEEEcCCCeEEEEeccCCCc--eE-EEEEcCCCCeEEEEeC
Q 004737          451 SKVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA  512 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg---------------~I~VWd~~t~~~~~~l~~h~~~--V~-~l~fspdg~~Lasgs~  512 (732)
                      ..|..+.|+|.++||++-+...               .+.|||+.++..+..+..-..+  .+ -+.|+.+.+|+|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            3499999999999999976543               4999999999999998776655  55 68899988887766 3


Q ss_pred             CCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCC-cEEEE-----EeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737          513 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKE-DLLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  584 (732)
Q Consensus       513 Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~-~llaS-----gs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~  584 (732)
                      ...++|+++ ++.....-+..- ...|....|+|.++ ..||.     ....+.+++|.+..+..+..... ...-..+.
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            447999997 433222211111 25678888888742 22332     34578899999987666544332 23345688


Q ss_pred             EeCCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCC
Q 004737          585 FQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG  650 (732)
Q Consensus       585 ~sp~g~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~  650 (732)
                      |.+.|.++++-..           +..+++++++...+.... .-.++|...+|.|.++.+++++   +-.+.++|++..
T Consensus       230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence            9998888765432           356889998855444433 5688999999999988777665   679999999864


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE----
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS----  723 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs----  723 (732)
                          ..  +......-+.+.|+|.++++++++-++   .|.+||......+.-.-......-+.|+||+.++.+..    
T Consensus       309 ----l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k  382 (561)
T COG5354         309 ----LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK  382 (561)
T ss_pred             ----eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence                22  223355567789999999999988765   89999988776663222233445678999999888764    


Q ss_pred             --CCCeEEEeC
Q 004737          724 --HDKCVKIWK  732 (732)
Q Consensus       724 --~DG~I~IWD  732 (732)
                        .|..|+|||
T Consensus       383 ~~~Dn~i~l~~  393 (561)
T COG5354         383 LRVDNSIKLWD  393 (561)
T ss_pred             cccCcceEEEE
Confidence              478899996

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.5e-10  Score=130.05  Aligned_cols=238  Identities=14%  Similarity=0.111  Sum_probs=158.0

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe--E-EEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCC
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  546 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~--L-asgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspd  546 (732)
                      ..|.+.|.+.+... .+......+..-+|+|||+.  + ++...+|  .|.+.++..+.  .+.+....+......|+||
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILALQGNQLMPTFSPR  241 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ceEeecCCCCccceEECCC
Confidence            36777777655443 34445566788899999975  3 2443443  57777887665  2333434555667899999


Q ss_pred             CCcEEEEEeCCC----cEEEEECCCC---eeeeEEecc-CCeeEEEEeCCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 004737          547 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK  614 (732)
Q Consensus       547 g~~llaSgs~Dg----~I~iWDl~t~---~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~-dg~--I~IwDl~t-~~~i~~  614 (732)
                      |+.++++...+|    .+.+|++..+   +........ ......+|+|+|+.|+..+. +|.  |+++++.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            998888775433    3444777653   333333222 23467899999998887764 554  55556542 233444


Q ss_pred             EcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 004737          615 LQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL  687 (732)
Q Consensus       615 l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I  687 (732)
                      +..+...+....|+|||+.|+...  ++  .|.+||+.++..    ..+......+....|+|||++|+....+   ..|
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L  397 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL  397 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence            544556778899999999988776  33  799999988732    2222223456778999999988876543   379


Q ss_pred             EEEECCCCeEEEEccCCCCeeEEEEeCCC
Q 004737          688 ELWNMTENKTLTLSAHDKLVSSLAASTVN  716 (732)
Q Consensus       688 ~IwDl~t~~~~~~~~h~~~V~sla~spdg  716 (732)
                      ++||+.+++...+....+.+...+|+|-.
T Consensus       398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        398 YLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEECCCCCEEEeecCCCcccCceecCCC
Confidence            99999988877666666677788888753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=1.3e-09  Score=117.59  Aligned_cols=256  Identities=11%  Similarity=0.058  Sum_probs=169.3

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC----------CCeEEEEecCCCCceeEEeecC-------
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH-------  534 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWDl~s~~~~~~~l~~h-------  534 (732)
                      +.|.|.|..+++.+..+.....+- .+ ++||++.|+++..          +..|.|||+.+.+. +..+.--       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence            899999999999998887544433 24 9999998887765          78999999999774 4333321       


Q ss_pred             CcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeE-
Q 004737          535 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVC-  611 (732)
Q Consensus       535 ~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~-  611 (732)
                      ......++++|||+.++++--. +..|.++|+.+++.+..+....+..-...+...  +.+-+.||......+.+ ++. 
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~  181 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPK  181 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCCceE
Confidence            1233478999999888866634 899999999999999988865543333333222  22333444444433322 111 


Q ss_pred             EEE---EcCCCCCEEE-EEEeC-CCCEEEEEeCCeEEEEECCCCCC--ceeEEEeec-------CCCceEEEEEeCCCCE
Q 004737          612 RLK---LQGHKNQVHS-VCWNT-SGEYLASVSDELVRVWSIGSGSK--GECIHELSC-------TGNKFHSCVFHPTFPS  677 (732)
Q Consensus       612 i~~---l~~h~~~V~s-la~sp-dg~~LasgsDg~I~IWDl~t~~~--~~~i~~~~~-------~~~~I~sl~fspdg~~  677 (732)
                      ...   +.....++.. -.|.+ +|++++...+|.|.+.|+.....  ...+..+..       ....+.-++++++++.
T Consensus       182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~  261 (352)
T TIGR02658       182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR  261 (352)
T ss_pred             EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence            111   1110111100 03455 88888888899999999755321  112222111       1233445999999999


Q ss_pred             EEEEE----------cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEeC
Q 004737          678 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  732 (732)
Q Consensus       678 L~sgs----------~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWD  732 (732)
                      +++..          ..+.|.++|..+++.+....-...+..+++++|++ +|++.. .++.|.|.|
T Consensus       262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            98853          12479999999999996655567899999999999 888766 577788875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=1.2e-10  Score=130.45  Aligned_cols=205  Identities=15%  Similarity=0.187  Sum_probs=147.9

Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCE
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR  591 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~  591 (732)
                      ..|.++|.....  .+.+..+...+...+|+|+++.++++...+  ..|++||+.+++..........+..++|+|+++.
T Consensus       170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            368888876433  455566777899999999998887665443  4799999998876555555556777999999998


Q ss_pred             EEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCC
Q 004737          592 ILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN  664 (732)
Q Consensus       592 ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~  664 (732)
                      |++... ++  .|++||+.++... .+..+........|+||++.|+.++  ++  .|++||+.++.    ...+..+..
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~  322 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG  322 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence            876543 33  6999999887543 3344545556789999999887766  33  68888887652    223333455


Q ss_pred             ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          665 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      .+....|+|++++++.+..++   .|++||+.++....+... .......|+|++++|+.++.++
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            677889999999999988876   899999988765544332 2345678999999888877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.5e-10  Score=130.05  Aligned_cols=215  Identities=13%  Similarity=0.112  Sum_probs=142.6

Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc--EEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCC
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRL  589 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~--llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g  589 (732)
                      +.|.+.|.+...  .+.+......+.+-.|+|||..  ++++...++  .|++.++..++........+......|+|||
T Consensus       165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence            357777776543  3445545666788899999876  333554443  5888899888766655555667778999999


Q ss_pred             CEEEEEEc-CC----eEEEEECCCC---eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEE--ECCCCCCceeEE
Q 004737          590 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVW--SIGSGSKGECIH  657 (732)
Q Consensus       590 ~~ll~~s~-dg----~I~IwDl~t~---~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IW--Dl~t~~~~~~i~  657 (732)
                      +.|+.... +|    .+.+|++..+   ........+.......+|+|||+.|+..+  +|...+|  ++....  ....
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~  320 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR  320 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence            99887764 22    3444777652   33333333334456789999999888766  5644444  443211  1223


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC-C--CeEEEe
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW  731 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~-D--G~I~IW  731 (732)
                      .+......+....|+|||++|+....+   ..|++||+.+++...+......+....|+||+++|+.... +  ..|.+|
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            333344566788999999999887654   3799999999988766555556788999999998775443 2  345555


Q ss_pred             C
Q 004737          732 K  732 (732)
Q Consensus       732 D  732 (732)
                      |
T Consensus       401 d  401 (428)
T PRK01029        401 S  401 (428)
T ss_pred             E
Confidence            3

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=3.5e-09  Score=110.66  Aligned_cols=268  Identities=12%  Similarity=0.099  Sum_probs=185.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCC--CeEEE--EeccCCCceEEEEEcCCCCeEEEEeC-CCeEE
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DRTVR  517 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t--~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~  517 (732)
                      +-.+.+.++-|+|+|+.++|.++-.   +|.|..|.++.  |++..  .......+-+.+++++++++|+++.. -|.|.
T Consensus        35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~  114 (346)
T COG2706          35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS  114 (346)
T ss_pred             hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence            3456677899999999999988765   47788887764  54432  22222333488999999999999876 57999


Q ss_pred             EEecCCCCcee--EEeecCCcc----------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----EEeccCCee
Q 004737          518 VWDTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKCQSGAT  581 (732)
Q Consensus       518 IWDl~s~~~~~--~~l~~h~~~----------V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~----~~~~~~~i~  581 (732)
                      ++-+.......  .....|.+.          +.+..|.|+++.+++..=.--.|.+|++..++...    .++...+..
T Consensus       115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR  194 (346)
T COG2706         115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR  194 (346)
T ss_pred             EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc
Confidence            99986543211  123335554          88899999976665443333469999999776543    223446689


Q ss_pred             EEEEeCCCCEEEEEEc-CCeEEEEECCCC-eEEEEEcC---------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 004737          582 QMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIG  648 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~-dg~I~IwDl~t~-~~i~~l~~---------h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~  648 (732)
                      .+.|+|++++.++.++ +++|.+|..+.. ..+..+..         ...+...|.+++||++|+++.  .+.|.+|.+.
T Consensus       195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            9999999999887776 899999998873 22222221         234677899999999999988  4588888887


Q ss_pred             CCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCeEEEEc--cCCCCeeEEEEe
Q 004737          649 SGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTLS--AHDKLVSSLAAS  713 (732)
Q Consensus       649 t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl--~t~~~~~~~--~h~~~V~sla~s  713 (732)
                      .... ...+.....++..-..+.|++++++|+++..++ .|.+|.+  ++|++-.+.  .......|+.|.
T Consensus       275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            6432 334444445555578899999999999999877 6777755  556655222  344455666664

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=3.9e-11  Score=120.10  Aligned_cols=146  Identities=17%  Similarity=0.333  Sum_probs=107.8

Q ss_pred             eeEEEEeCCCCEEEEEEc----------CCeEEEEECCCC-eEEEEEcC-CCCCEEEEEEeCCCCEEEEEe---CCeEEE
Q 004737          580 ATQMRFQPRLGRILAAAI----------ENYISILDVETQ-VCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV  644 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~----------dg~I~IwDl~t~-~~i~~l~~-h~~~V~sla~spdg~~Lasgs---Dg~I~I  644 (732)
                      -..+.|+++|.+|++-..          -+...+|.++.. ..+..+.- ..++|.+++|+|+|+.|+++.   +..|.+
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            346788888888766544          234555555322 22333322 345799999999999876653   669999


Q ss_pred             EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737          645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS  721 (732)
Q Consensus       645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaS  721 (732)
                      ||++.    ..+..+.  ...+..+.|+|+|++|++++.+   |.|.+||+.+.+.+....|. .++.++|+|||++|++
T Consensus        88 yd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEE
Confidence            99962    4555553  5678899999999999998754   57999999988888665565 4789999999999999


Q ss_pred             EEC------CCeEEEeC
Q 004737          722 ASH------DKCVKIWK  732 (732)
Q Consensus       722 gs~------DG~I~IWD  732 (732)
                      +..      |..++||+
T Consensus       161 a~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             EEeccceeccccEEEEE
Confidence            874      78889985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=5.7e-11  Score=118.96  Aligned_cols=154  Identities=18%  Similarity=0.268  Sum_probs=110.9

Q ss_pred             EEEEcCCCCEEEEEEC----------CCcEEEEEcCC-CeEEEEecc-CCCceEEEEEcCCCCeEEEEe--CCCeEEEEe
Q 004737          455 SCHFSPDGKLLATGGH----------DKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPSLSRLATSS--ADRTVRVWD  520 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~----------Dg~I~VWd~~t-~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs--~Dg~I~IWD  520 (732)
                      .+.|+++|++|++-..          -+...||.++. ......+.- ..++|.+++|+|+++.||+..  .++.|.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            5889999988765433          13455565532 233334432 345799999999999876653  567999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-  597 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-  597 (732)
                      ++. . .+..+  +...+..|.|+|+|+.+++++.  ..|.|.+||+++.+.+....+. .++.++|+|+|+++++++. 
T Consensus        90 ~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen   90 VKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             Ccc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence            972 2 34444  3567889999999877775542  3478999999998888877654 5789999999999998875 


Q ss_pred             -----CCeEEEEECCCCeEEEE
Q 004737          598 -----ENYISILDVETQVCRLK  614 (732)
Q Consensus       598 -----dg~I~IwDl~t~~~i~~  614 (732)
                           |+.++||+.. |+.+..
T Consensus       165 ~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             cceeccccEEEEEec-CeEeEe
Confidence                 6889999985 544443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.36  E-value=1.8e-11  Score=141.05  Aligned_cols=267  Identities=16%  Similarity=0.218  Sum_probs=184.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      -+++++..+-.  +||++|. --.|.+||+..+..+..+      ..|...=.-.   -.+.+++++..-+.+.+=+...
T Consensus         7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~   80 (967)
T KOG0974|consen    7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASN   80 (967)
T ss_pred             cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhh
Confidence            34456666654  5776654 358999999887665443      2341000000   1234555555444343332221


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-----eEEEEeCCCCEEEEEEcC
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-----~~v~~sp~g~~ll~~s~d  598 (732)
                           ..+....+.|....+..+. ..++....+..+.+||...+.....+.+....     .-+-++++.-++++++.-
T Consensus        81 -----~~~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~  154 (967)
T KOG0974|consen   81 -----QIIERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF  154 (967)
T ss_pred             -----hhhhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence                 1112222334444444443 44556666888999999887777666554432     123345555678888889


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      +.|.+|+....+.-..+.+|++.|.++.|+.||+++++++ |.++++|++.+.+...  ...-+|...+..++|+|.  .
T Consensus       155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~  230 (967)
T KOG0974|consen  155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R  230 (967)
T ss_pred             ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence            9999999985444446889999999999999999999999 8899999999975322  244578999999999999  7


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEccCC-CCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          678 LLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t~~~~~~~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++++.|-+.++|+.....+..+..|. ..|+.++..++...++|++.||.+++|+
T Consensus       231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            999999999999977665555677775 5799999999999999999999999996

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.33  E-value=2.6e-10  Score=125.10  Aligned_cols=187  Identities=18%  Similarity=0.275  Sum_probs=152.8

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCeEEEEecc---CCCceEEEEEc------C--------------CCCeEEEEeCCCeE
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV  516 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~---h~~~V~~l~fs------p--------------dg~~Lasgs~Dg~I  516 (732)
                      |-..|+|....||.++|||+..++....+..   -++..++..|.      |              |-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567999999999999999998887766642   23445555552      1              23467888889999


Q ss_pred             EEEecCCCCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEE
Q 004737          517 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILA  594 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~  594 (732)
                      .+|++..++...+.. ..|.+.|.++.++.+ -.+|++++.|+.+.+|+......++.+... ..+.+++++||++.+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~-~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQR-LGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccc-cCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999999887544443 579999999999876 467789999999999999999999888864 44889999999988887


Q ss_pred             EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC-----CCEEEEEe--CCeEEEEECCC
Q 004737          595 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS  649 (732)
Q Consensus       595 ~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd-----g~~Lasgs--Dg~I~IWDl~t  649 (732)
                      ++  +.|.+||+++++.+..|.+|.++|.++.|..+     |.|++++.  +..+.+|-+..
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            76  78999999999999999999999999999877     78888776  66788887765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=5e-09  Score=109.49  Aligned_cols=261  Identities=10%  Similarity=0.119  Sum_probs=181.5

Q ss_pred             CCcEEEEEcCCC--eEE-EEeccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCC--CceeE-EeecCCcceEEE
Q 004737          471 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENP--DYSLR-TFTGHSTTVMSL  541 (732)
Q Consensus       471 Dg~I~VWd~~t~--~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~--~~~~~-~l~~h~~~V~sl  541 (732)
                      +.-|++|++++.  +.. ..+-.+.+.++-++|+|+.++|+++-.+   |.|..|.++..  ..... .......+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            467999998732  221 1223466788999999999999988654   77888888753  32211 111122344889


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCC-Ceee---eEEeccCC----------eeEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSG----------ATQMRFQPRLGRILAAAIE-NYISILDV  606 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i---~~~~~~~~----------i~~v~~sp~g~~ll~~s~d-g~I~IwDl  606 (732)
                      ++++++..++++....|.|.++-+.. |...   ..+.+.+.          +....+.|+++++++..-. ..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999988887778889999999965 4332   33344333          7889999999998888764 68999999


Q ss_pred             CCCeEEEEEc---CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 004737          607 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT  674 (732)
Q Consensus       607 ~t~~~i~~l~---~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~-~~~~~i~~~~~------~~~~I~sl~fspd  674 (732)
                      ..+.....-.   .....-+.|.|+|++++.++..  +++|.+|..... ...+.+..+..      ...+...+.+++|
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            9775432211   2345678899999999998887  999999999874 22233333322      1345678899999


Q ss_pred             CCEEEEEEcCC-eEEEEECCC--CeEE---EEccCCCCeeEEEEeCCCCEEEEEECCC-eEEEe
Q 004737          675 FPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW  731 (732)
Q Consensus       675 g~~L~sgs~dg-~I~IwDl~t--~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG-~I~IW  731 (732)
                      |++|+++.... .|.+|.+..  +++.   ....+......+.|++.+++|+++..|+ .|.||
T Consensus       255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            99888876533 788887653  4433   2234455588999999999999998654 56665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=5.9e-10  Score=121.44  Aligned_cols=273  Identities=12%  Similarity=0.150  Sum_probs=183.8

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      ..-+.+|++.++.....+.  ...... ++..|+.|..+.|-- ..+.|.+|++.+.+.+.. .-|...|+.+.++|.+.
T Consensus       104 ~pn~~v~~vet~~~~s~~q--~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~  178 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQ--KKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPE  178 (566)
T ss_pred             CCceeeeeeccceehhhee--hhhhcC-cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCC
Confidence            4556788888854322211  112222 689999988654432 246899999987544322 23677899999999632


Q ss_pred             --eEEE-----EeCCCeEEEEecCCCCc--e--eEEeecCCcceEEEEEcCCCCcEEEEEe--CC---------CcEEEE
Q 004737          506 --RLAT-----SSADRTVRVWDTENPDY--S--LRTFTGHSTTVMSLDFHPSKEDLLCSCD--NN---------SEIRYW  563 (732)
Q Consensus       506 --~Las-----gs~Dg~I~IWDl~s~~~--~--~~~l~~h~~~V~sl~fspdg~~llaSgs--~D---------g~I~iW  563 (732)
                        .+|+     .+.-..|+||.+.....  .  .+.|.  ...-..+.|++.|.-+|+.++  -|         .+++++
T Consensus       179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll  256 (566)
T KOG2315|consen  179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLL  256 (566)
T ss_pred             CceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEE
Confidence              3333     24456899998873221  1  12222  223356778887776665443  23         368899


Q ss_pred             ECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---
Q 004737          564 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---  638 (732)
Q Consensus       564 Dl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s--~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---  638 (732)
                      ++....+...+...++|.++.|++++..++++.  .-..+.|||++. .++..+  ..++-+++-|+|.|++|+.++   
T Consensus       257 ~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGN  333 (566)
T KOG2315|consen  257 ATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGN  333 (566)
T ss_pred             EecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCC
Confidence            998667777777789999999999998776654  467999999874 444444  467778999999999999887   


Q ss_pred             -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEEccCCCCeeEEE
Q 004737          639 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLA  711 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~------dg~I~IwDl~t~~~~~~~~h~~~V~sla  711 (732)
                       -|.|.|||+.+.   +++..+...  ..+-+.|+|||.+|+++++      |+.++||++....... .........+.
T Consensus       334 L~G~mEvwDv~n~---K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~  407 (566)
T KOG2315|consen  334 LPGDMEVWDVPNR---KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVE  407 (566)
T ss_pred             CCCceEEEeccch---hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhhee
Confidence             469999999885   666666543  3456799999999999986      5689999986544331 11111466666


Q ss_pred             EeC
Q 004737          712 AST  714 (732)
Q Consensus       712 ~sp  714 (732)
                      |-|
T Consensus       408 W~P  410 (566)
T KOG2315|consen  408 WRP  410 (566)
T ss_pred             eee
Confidence            664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.27  E-value=2.9e-11  Score=130.11  Aligned_cols=280  Identities=15%  Similarity=0.206  Sum_probs=194.2

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  514 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg  514 (732)
                      .+..+.||...|..++--.+.+-+++++.|++|++|.++.       ..+..++..|+.+|.++.|-.+-++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            4567899999999998888888999999999999998763       34667888999999999999998888765  88


Q ss_pred             eEEEEecCCCCceeEEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc------CCeeEEE
Q 004737          515 TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------SGATQMR  584 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~------~~i~~v~  584 (732)
                      -|.+||.--+.......    .+..+.|.|+.- -+...+++.|+...+|+++|.+..+....++.-      .-+.+++
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            99999976544221111    112233444321 133445556688999999999988877666532      3378899


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEE-EECCCCCCceeEEEeecC
Q 004737          585 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCT  662 (732)
Q Consensus       585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~I-WDl~t~~~~~~i~~~~~~  662 (732)
                      +.+.|++++++-.+|.|.+.|.++++.+..+...+.....++- |....|+... |.++.| |...++   ......+..
T Consensus       884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kpp  959 (1034)
T KOG4190|consen  884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP  959 (1034)
T ss_pred             eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence            9999999999999999999999999999888765555555543 4555565555 888888 876554   222222222


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-C------eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          663 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-N------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       663 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t-~------~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      ..+..  -.-.-|..+++......+.+|.-.. .      ..++-....+..++++.-|-+.-++.|.+.|.|.+
T Consensus       960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            22111  1112345567766666777774211 1      11122345567888888888887888888898875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=6.3e-10  Score=123.16  Aligned_cols=273  Identities=15%  Similarity=0.229  Sum_probs=193.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------------eEEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADR  514 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---------------~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg  514 (732)
                      .....|++|+....|+|+|+.||.++|..+.+.               ..-.++.+|+..|.-+.|+.+...|-|+..+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            345889999999999999999999999976532               12246789999999999999999999999999


Q ss_pred             eEEEEecCCCCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEeccCCeeEEEEeCCCCEE
Q 004737          515 TVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~~~i~~v~~sp~g~~l  592 (732)
                      .|.||-+-.+......+ ....+.|.+++|..+|.. ++....||.|.+=.++..+.-. .++ ......+.|++|...+
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLk-g~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELK-GQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcc-hheccceeecccHHHH
Confidence            99999988766533222 234567899999999754 4567778888887776433221 111 1224578899999999


Q ss_pred             EEEEcCCeEEEEECCCC-------eEEEE----EcCCCCCEEEEEEe--------CCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          593 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~-------~~i~~----l~~h~~~V~sla~s--------pdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      +.+-.+|.+.+||....       .+...    +......|..++|.        ||...|+++. .|.+.|..-.+...
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            99999999999997642       12111    12223346677774        4677888888 78888876655433


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---------~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      +..+.    .+-.+....|+++|..|++++.+.         .|.+|..- |+.+ ++......|++++|-..|-.++.+
T Consensus       252 Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  252 PVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             CeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEE
Confidence            22222    246788899999999999998753         45555433 3333 666777889999997766555544


Q ss_pred             ECCCeEEE
Q 004737          723 SHDKCVKI  730 (732)
Q Consensus       723 s~DG~I~I  730 (732)
                       .|+.|.+
T Consensus       327 -vdsfiyf  333 (1189)
T KOG2041|consen  327 -VDSFIYF  333 (1189)
T ss_pred             -ecceEEE
Confidence             4565553

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=8.3e-10  Score=119.72  Aligned_cols=272  Identities=13%  Similarity=0.184  Sum_probs=181.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECC-----------CcEEEEEcCCCeEEEEeccC--CCceE-EEEEcCCCCeEEEEeCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHD-----------KKAVLWCTESFTVKSTLEEH--TQWIT-DVRFSPSLSRLATSSADR  514 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~D-----------g~I~VWd~~t~~~~~~l~~h--~~~V~-~l~fspdg~~Lasgs~Dg  514 (732)
                      |.+ |.-+.|||..+||+|-+..           ..++|||+.+|...+.+...  ...++ -+.||.|++|+|.-..| 
T Consensus       249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-  326 (698)
T KOG2314|consen  249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-  326 (698)
T ss_pred             CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence            544 8889999999999997642           57899999999998887652  22232 46899999999988764 


Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEeccC-CeeEEEEeCC
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR  588 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~  588 (732)
                      +|.||+..+-. .+..-.-.-..|....|+|.+ .+||--..     -..+.+..+.++..+++..... .-..+.|...
T Consensus       327 sisIyEtpsf~-lld~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~  404 (698)
T KOG2314|consen  327 SISIYETPSFM-LLDKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS  404 (698)
T ss_pred             eEEEEecCcee-eecccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC
Confidence            79999877522 111111123568888999985 45443221     1346666666666665554322 2334677777


Q ss_pred             CCEEEEEEc-------C---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECC-CCCCc
Q 004737          589 LGRILAAAI-------E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKG  653 (732)
Q Consensus       589 g~~ll~~s~-------d---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~-t~~~~  653 (732)
                      |.+|.+-..       .   ..+.|+.++........-.-...|...+|.|.|..+++-+    ..++.+|.+. +....
T Consensus       405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~  484 (698)
T KOG2314|consen  405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP  484 (698)
T ss_pred             CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence            777655332       1   1355666665433222223567889999999998877765    3489999988 44444


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC  727 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~---dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~  727 (732)
                      ..+..+..  ...+.+.|+|.|.++++++-   .|.+.+||+.-..+.  ....| ...+.+.|.|.|+|++|++.-..
T Consensus       485 ~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  485 SLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             hhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhh
Confidence            45555543  56788999999999887754   568999999853332  33334 35688999999999999986443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.26  E-value=3.8e-08  Score=106.40  Aligned_cols=259  Identities=10%  Similarity=0.096  Sum_probs=157.3

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCCeEEEEeccCCC---
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQ---  493 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h~~---  493 (732)
                      ..+.+.|..++.....+   ..-..+-. + ++|||+.|+++..          +..|.|||+.+++.+..+.....   
T Consensus        27 ~~v~ViD~~~~~v~g~i---~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~  101 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMT---DGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF  101 (352)
T ss_pred             ceEEEEECCCCEEEEEE---EccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence            34455565565443333   32222222 4 9999998877655          78999999999999988864222   


Q ss_pred             ----ceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          494 ----WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       494 ----~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                          ....++++|||++|++...  +..|.|+|+.+++. +..+.- .+...-...+++ .+++ -| .||......+.+
T Consensus       102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~  176 (352)
T TIGR02658       102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPTAND-TFFM-HC-RDGSLAKVGYGT  176 (352)
T ss_pred             hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEecCC-ccEE-Ee-ecCceEEEEecC
Confidence                3347899999999998763  68999999998774 443332 111111222221 1111 12 234333332221


Q ss_pred             -Cee-eeE---Eecc-CCe-eEEEEeC-CCCEEEEEEcCCeEEEEECCCC-----eEEEEEcC-------CCCCEEEEEE
Q 004737          568 -GSC-AGV---FKCQ-SGA-TQMRFQP-RLGRILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCW  627 (732)
Q Consensus       568 -~~~-i~~---~~~~-~~i-~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~-------h~~~V~sla~  627 (732)
                       ++. ...   +... ..+ ..-.|.+ ++.++++... |.|++.|+...     .....+..       ..+.+.-+++
T Consensus       177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~  255 (352)
T TIGR02658       177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY  255 (352)
T ss_pred             CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence             111 111   1110 000 0114466 5555555554 99999996443     22222211       2334445999


Q ss_pred             eCCCCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCC
Q 004737          628 NTSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTE  694 (732)
Q Consensus       628 spdg~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~t  694 (732)
                      +++++.+++..           .+.|.++|..+.   +.+..+.. +..+..++++||++ +|++.. .++.|.++|..+
T Consensus       256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             cCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            99998888742           258999999887   56665553 66899999999999 777666 467899999999


Q ss_pred             CeEEEE
Q 004737          695 NKTLTL  700 (732)
Q Consensus       695 ~~~~~~  700 (732)
                      ++.+..
T Consensus       332 ~k~i~~  337 (352)
T TIGR02658       332 GKELSS  337 (352)
T ss_pred             CeEEee
Confidence            988833

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.24  E-value=1.2e-08  Score=112.90  Aligned_cols=252  Identities=11%  Similarity=0.037  Sum_probs=160.7

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEE-EEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce-
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-  538 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~-l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V-  538 (732)
                      ++..+++++.++.|..||..+|+.+....... .+.+ ...  .+..++.++.++.|..||.++++. +..+......+ 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence            46688888899999999999999887654332 2222 112  345677788899999999998774 33222211111 


Q ss_pred             ----EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-----------e-eEEEEeCCCCEEEEEEcCCeEE
Q 004737          539 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       539 ----~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-----------i-~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                          .+..+. +  ..++.+..++.+..+|+++++.+........           + ....+  .++.+++++.+|.++
T Consensus       180 ~~~~~sp~~~-~--~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~  254 (377)
T TIGR03300       180 LRGSASPVIA-D--GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVA  254 (377)
T ss_pred             ecCCCCCEEE-C--CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEE
Confidence                111222 2  2455777789999999999987765432111           0 01111  356888889999999


Q ss_pred             EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEE
Q 004737          603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~s  680 (732)
                      .||.++++.+..... . .......  ++..+++++ ||.|..+|..+++   .+...... .....+...  .+..+++
T Consensus       255 a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~  325 (377)
T TIGR03300       255 ALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVV  325 (377)
T ss_pred             EEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEE
Confidence            999999987776542 1 1122222  345566556 8999999998873   33333211 111222222  3567999


Q ss_pred             EEcCCeEEEEECCCCeEE-EEccCCCCe-eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          681 IGCYETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       681 gs~dg~I~IwDl~t~~~~-~~~~h~~~V-~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++.+|.|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|..|.
T Consensus       326 ~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       326 GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence            999999999999999988 554454333 333333 3 4588899999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.21  E-value=1e-10  Score=129.81  Aligned_cols=278  Identities=18%  Similarity=0.291  Sum_probs=195.9

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEecc-CCCceEEEEEcCC--CCeEEEEeCCCeEEEEecCCC--
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENP--  524 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~-h~~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~--  524 (732)
                      +.+.++.++|.|+-+|.++.-| +.|-|+.. +....-+.. ..-.|-++.|++.  -.+-++......-.||++...  
T Consensus        25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~  103 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS  103 (1081)
T ss_pred             CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence            4577899999999999998765 44555553 333333321 2234777889874  345555555666788987643  


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEE-eccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      ......+.+|...|+.+.|+|....++++|+.|-.|..||++.... +..+ ..+.....+.|+.....+++.+..+.|.
T Consensus       104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~  183 (1081)
T KOG0309|consen  104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF  183 (1081)
T ss_pred             cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence            2334567899999999999999999999999999999999987543 3333 2456788899999888999999999999


Q ss_pred             EEECCCC-eEEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737          603 ILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       603 IwDl~t~-~~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~  679 (732)
                      +||++.+ .++..+++|...|+.+.|..- ...+.+++ |++|+.||......  .-........+|+.-.|.|-|.-.+
T Consensus       184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCceeE
Confidence            9999986 678889999999999998763 22344455 99999999976532  1112223456777777777665433


Q ss_pred             EEEcCC--eEEEE---------ECCCCe-EE-EEccCCCCeeEEEEeCCC----------CEEEEEECCCeEEEe
Q 004737          680 VIGCYE--TLELW---------NMTENK-TL-TLSAHDKLVSSLAASTVN----------GMVASASHDKCVKIW  731 (732)
Q Consensus       680 sgs~dg--~I~Iw---------Dl~t~~-~~-~~~~h~~~V~sla~spdg----------~~LaSgs~DG~I~IW  731 (732)
                      +--..|  .+.++         +..++. .+ ++.+|...|...-|-..+          -.|+|-+.|..+++|
T Consensus       262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            322222  34444         333332 22 788999988777664322          279999999999999

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.19  E-value=4.5e-09  Score=113.43  Aligned_cols=271  Identities=18%  Similarity=0.199  Sum_probs=188.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--------------
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--------------  514 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--------------  514 (732)
                      -.-++..++|||.|.+|++... .-|.+|+...+..+..+. |. .|..+.|+|+++||.+=+...              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            4557889999999999998765 468999998887666664 44 499999999999999866533              


Q ss_pred             -eEEEEecCCCCceeEEeecCCcc--eE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEe--ccCCeeEEEEeC
Q 004737          515 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK--CQSGATQMRFQP  587 (732)
Q Consensus       515 -~I~IWDl~s~~~~~~~l~~h~~~--V~-sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-~~~~--~~~~i~~v~~sp  587 (732)
                       .+.|||+.++. .+..+.....+  .+ -+.|+-++.+.+-.  ....++|+++ ++... ..+.  ...++....|+|
T Consensus       108 n~~~vwd~~sg~-iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         108 NNVFVWDIASGM-IVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             CceeEEeccCce-eEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence             49999999876 46666665555  55 67788775444333  2456999997 33221 1111  135688889998


Q ss_pred             CCCE--EEEE-----EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe------------CCeEEEEECC
Q 004737          588 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG  648 (732)
Q Consensus       588 ~g~~--ll~~-----s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs------------Dg~I~IWDl~  648 (732)
                      .++.  |++-     ...+.+++|.+..+..+....-....-..+.|.+.|++|++--            +..++|+++.
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~  263 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence            7433  3332     2367899999987766554332233335688999998876532            2367888887


Q ss_pred             CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC-
Q 004737          649 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-  725 (732)
Q Consensus       649 t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D-  725 (732)
                      ..    .+.......++|...+|.|.++.+++++  .+..+.++|++.+  +.+......=..+.|+|.+++++.++-| 
T Consensus       264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence            43    2222224578999999999998887776  3458999999887  4444555566778889999988887765 


Q ss_pred             --CeEEEeC
Q 004737          726 --KCVKIWK  732 (732)
Q Consensus       726 --G~I~IWD  732 (732)
                        |.|-|||
T Consensus       338 l~gni~i~~  346 (561)
T COG5354         338 LQGNIEIFD  346 (561)
T ss_pred             cccceEEec
Confidence              5677775

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=2.1e-08  Score=112.15  Aligned_cols=227  Identities=11%  Similarity=0.061  Sum_probs=149.6

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe-EEEEeCC---CeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  547 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~-Lasgs~D---g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg  547 (732)
                      ..|.+-|.+.... ..+.... .+....|+|||+. ++..+.+   ..|.++|+.++..  +.+....+.+....|+|||
T Consensus       169 ~~l~~~d~dg~~~-~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTYQ-KVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCce-eEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence            3566656554433 3333233 7888999999984 6654443   4688899987653  3333455666778899999


Q ss_pred             CcEEEEEeCC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCE
Q 004737          548 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV  622 (732)
Q Consensus       548 ~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V  622 (732)
                      ..++++.+.+  ..|+++|+.+++...............|+|+|+.|+..+.. +  .|+++|+.+++....... ... 
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~-  322 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN-  322 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence            9888877655  46888898877755443333334567899999988887753 2  688899988766443321 111 


Q ss_pred             EEEEEeCCCCEEEEEe-C-------C--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 004737          623 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL  689 (732)
Q Consensus       623 ~sla~spdg~~Lasgs-D-------g--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~I  689 (732)
                       ...|+|||++|+... .       +  .|.+.|+.++..    ..+... .......|+|||+.|+....++   .|.+
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~  396 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI  396 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence             248999999988776 2       2  678888877632    222222 2233578999999888877554   5788


Q ss_pred             EECCCCeEEEEccCCCCeeEE
Q 004737          690 WNMTENKTLTLSAHDKLVSSL  710 (732)
Q Consensus       690 wDl~t~~~~~~~~h~~~V~sl  710 (732)
                      +++.......+....+.|...
T Consensus       397 ~~l~g~~~~~l~~~~g~~~~p  417 (419)
T PRK04043        397 IRLNYNKSFLFPLKVGKIQSI  417 (419)
T ss_pred             EecCCCeeEEeecCCCccCCC
Confidence            888777666555444444443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.18  E-value=3e-09  Score=116.78  Aligned_cols=188  Identities=19%  Similarity=0.303  Sum_probs=150.2

Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeec---CCcceEEEEEc------C-------------CCCcEEEEEeCCCc
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFH------P-------------SKEDLLCSCDNNSE  559 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~---h~~~V~sl~fs------p-------------dg~~llaSgs~Dg~  559 (732)
                      |...|||....||.++|||...++. ...|..   -.+..++..|.      |             .+..+++-|...|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            4567899999999999999987663 222221   22344444442      1             23457778888999


Q ss_pred             EEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737          560 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  636 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Las  636 (732)
                      |.+|++..++....+.   +.+.+.++.++.+-..|.+++.|+.+..|+......++.+......+.+++.+||+..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            9999999999988887   4566889999999899999999999999999999999999999999999999999998887


Q ss_pred             EeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEECCC
Q 004737          637 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE  694 (732)
Q Consensus       637 gsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd-----g~~L~sgs~-dg~I~IwDl~t  694 (732)
                      ++ +.|++||+++.   +.+..+.+|.++|.++.|.-.     |.+++++.. +..+.+|-+..
T Consensus       162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            65 67999999988   899999999999999999877     666665543 44566775543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.17  E-value=6e-10  Score=112.86  Aligned_cols=198  Identities=20%  Similarity=0.251  Sum_probs=152.5

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCc-ee
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY-SL  528 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~-~~  528 (732)
                      -.++.|++-+..++++..+|.+.+-+.......  ..++.|.-+++...|+. +.+++++|+.|+.+..||++.++. ..
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            457889998999999999999996665554444  47899999999999976 457899999999999999995443 33


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEeccCCeeEEEEeCCCC-EEEEEEcCCeEEEEEC
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILDV  606 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~~~~~~~i~~v~~sp~g~-~ll~~s~dg~I~IwDl  606 (732)
                      .....|...|.+|.-+|....++++|+.|-.|++||.+ -++++..-...++|..+.++|... .+++++..+..+|.+.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~  283 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDS  283 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence            34677999999999999888999999999999999998 477777777779999999999643 3455555666677776


Q ss_pred             CCC--e---EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEE-EEECCCC
Q 004737          607 ETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG  650 (732)
Q Consensus       607 ~t~--~---~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~-IWDl~t~  650 (732)
                      ..+  +   .....+.|.+-+..-.|.....+|++|+  |..++ +|-.-++
T Consensus       284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            654  2   3344556777777777755567889888  77755 7765443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.15  E-value=1.1e-09  Score=111.42  Aligned_cols=239  Identities=17%  Similarity=0.319  Sum_probs=164.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----EEEEeccCC------------CceEEEEEcCCC--CeEEEE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS  510 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~------------~~V~~l~fspdg--~~Lasg  510 (732)
                      .+.|+++.|...|.||++|...|.|.+|.-+...     ....+.+|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999755322     222344443            347888887653  357777


Q ss_pred             eCCCeEEEEecCCCC-----------------------------------------ceeEEe-ecCCcceEEEEEcCCCC
Q 004737          511 SADRTVRVWDTENPD-----------------------------------------YSLRTF-TGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       511 s~Dg~I~IWDl~s~~-----------------------------------------~~~~~l-~~h~~~V~sl~fspdg~  548 (732)
                      +.|++|++|.+....                                         .+.+.+ ..|...|.++.|..|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            799999999876431                                         011112 35777889999998866


Q ss_pred             cEEEEEeCCCcEEEEECCCCe-eeeEEe--c------cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE------E
Q 004737          549 DLLCSCDNNSEIRYWSINNGS-CAGVFK--C------QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC------R  612 (732)
Q Consensus       549 ~llaSgs~Dg~I~iWDl~t~~-~i~~~~--~------~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~------i  612 (732)
                      .++ ++ +|-.|.+|+++-.. +.....  .      ..-|++..|+|.. ..+...+..|.|++-|++....      +
T Consensus       186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            655 44 47889999986432 222111  1      1237788899864 4566778889999999983211      1


Q ss_pred             E----------EEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC------------Cc---eE
Q 004737          613 L----------KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NK---FH  667 (732)
Q Consensus       613 ~----------~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~------------~~---I~  667 (732)
                      .          -+.+-...|..+.|+++|+||++-+--+|+|||++..+  .++.++..|.            ..   -.
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF  341 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF  341 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence            1          11122346788999999999998888899999998765  4555554331            12   24


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          668 SCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      .+.|+-|.+.+++|+.....-+|-+
T Consensus       342 eisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         342 EISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEEecCCcccccccccccceeeecc
Confidence            5788888888998888877777753

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.15  E-value=5.8e-08  Score=117.86  Aligned_cols=281  Identities=15%  Similarity=0.206  Sum_probs=186.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEE----EcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VW----d~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      ...+.|.++.|-+|...++.+..+|.|.++    +..+... .....-...|.+++||||+..|+.++.+++|.+..-+=
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            345789999999999999999999999999    5544322 22223456799999999999999999999888764320


Q ss_pred             -------------CC-cee--------E-------------------------EeecCCcceEEEEEcCCCCcEEEEEe-
Q 004737          524 -------------PD-YSL--------R-------------------------TFTGHSTTVMSLDFHPSKEDLLCSCD-  555 (732)
Q Consensus       524 -------------~~-~~~--------~-------------------------~l~~h~~~V~sl~fspdg~~llaSgs-  555 (732)
                                   +. ..+        .                         .+. +.+.-..|+|-.||.++.++.- 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence                         00 000        0                         011 3335567899999877665553 


Q ss_pred             -CC---CcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCC---eEEEEEcCCCCCEEE
Q 004737          556 -NN---SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVETQ---VCRLKLQGHKNQVHS  624 (732)
Q Consensus       556 -~D---g~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~---dg~I~IwDl~t~---~~i~~l~~h~~~V~s  624 (732)
                       ..   ..|+||+-+ |....+.+. .+--.+++|.|.|+.|++.-.   ...|.+|.-+..   +....+......|..
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence             22   579999977 655444332 233567899999998888765   346777775532   222222235668999


Q ss_pred             EEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC---
Q 004737          625 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---  695 (732)
Q Consensus       625 la~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl----~t~---  695 (732)
                      ++|++|+.+|+....+.|.+|-..+-.- ....++... ...+..+.|+|.... |.+.+.++.+..+++    ..+   
T Consensus       310 l~Wn~ds~iLAv~~~~~vqLWt~~NYHW-YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~  388 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDRVQLWTRSNYHW-YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS  388 (928)
T ss_pred             EEECCCCCEEEEEecCCceEEEeeCCEE-EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence            9999999999998866699999877521 222233322 233455899996543 555555565544332    211   


Q ss_pred             -------------eEEE----------------EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          696 -------------KTLT----------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       696 -------------~~~~----------------~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                                   ..+.                .......|.+++|++++..+++-..||.|.+|+
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                         1110                112356799999999998899999999998874

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.15  E-value=4.3e-08  Score=104.87  Aligned_cols=282  Identities=13%  Similarity=0.079  Sum_probs=190.0

Q ss_pred             eeeeeecCCC-ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-CCeEEEEeccCCC--ceEEEEEcCC
Q 004737          428 VGRSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQ--WITDVRFSPS  503 (732)
Q Consensus       428 ~~r~wd~~~g-~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~--~V~~l~fspd  503 (732)
                      ...+|-...+ ..|+.+-.+.+|-   +|-.+-. ++..+....||.=.||.++ .|+-+   +.|+.  .-.+=..+.|
T Consensus       205 rGklWis~d~g~tFeK~vdl~~~v---S~PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsD  277 (668)
T COG4946         205 RGKLWISSDGGKTFEKFVDLDGNV---SSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSD  277 (668)
T ss_pred             cceEEEEecCCcceeeeeecCCCc---CCceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCC
Confidence            4567776554 4788877777774   3333322 2333334556655555443 22222   22332  1223344668


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCceeEEee-----c-----CCcceEEEE-EcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737          504 LSRLATSSADRTVRVWDTENPDYSLRTFT-----G-----HSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAG  572 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~-----~-----h~~~V~sl~-fspdg~~llaSgs~Dg~I~iWDl~t~~~i~  572 (732)
                      |+.++.. ..|.|.+||.++.......+.     .     ...+..-+. |++....+++..+ .|...+.+...+-.+.
T Consensus       278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq  355 (668)
T COG4946         278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ  355 (668)
T ss_pred             CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence            8887765 567899999987653221111     0     001111121 4444455666666 5778888876555443


Q ss_pred             EEeccCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737          573 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       573 ~~~~~~~i~~v~~sp~g~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      . ....+|.-..+..+...++.|..|| .|-|||.++++... +...-+.|.++..+++|++++++. ...|.++|+.++
T Consensus       356 v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         356 V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            3 3446688888888888899999998 89999999887554 445678999999999999999988 458999999987


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg----~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      .   ....-....+-|+.+.|||++++++.+--+|    .|++||+.+++........+.=.+-+|.||+++|+--+
T Consensus       434 n---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         434 N---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             C---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            3   3333344567799999999999999998877    79999999999986666666667789999999887654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.14  E-value=5.7e-08  Score=107.43  Aligned_cols=255  Identities=13%  Similarity=0.068  Sum_probs=160.4

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  540 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s  540 (732)
                      .+..+++++.++.|..+|..+|+.+............+..  ++..+++++.++.+..||..+++...+ ... ...+.+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-~~~~~~  139 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR-AKL-SSEVLS  139 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee-ecc-Cceeec
Confidence            3568888888999999999999988766544332222332  467788888999999999988875332 221 122222


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee------EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737          541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDVETQVCRLK  614 (732)
Q Consensus       541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~------~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~  614 (732)
                      .-.. .+.. ++.+..++.|+.||.++++.+..+.......      ...+.  ++.++++..++.+..+|.++++.+..
T Consensus       140 ~p~v-~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       140 PPLV-ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             CCEE-ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence            1111 1233 4456678999999999999887776543321      11222  35778888889999999999987654


Q ss_pred             EcCCCC----C---EEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          615 LQGHKN----Q---VHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       615 l~~h~~----~---V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      ......    .   +..+.-+|  .+..+++++ ++.++.||..+++   .+..... . ......  ..+..+++++.+
T Consensus       216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~---~~W~~~~-~-~~~~p~--~~~~~vyv~~~~  288 (377)
T TIGR03300       216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR---VLWKRDA-S-SYQGPA--VDDNRLYVTDAD  288 (377)
T ss_pred             eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc---EEEeecc-C-CccCce--EeCCEEEEECCC
Confidence            331100    0   00111011  234555555 9999999998873   3333321 1 111122  245678888999


Q ss_pred             CeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          685 ETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       685 g~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.|+.+|..+++.+ ..... .........  .+..|++++.||.|++||
T Consensus       289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            99999999999877 32121 122223233  366888999999999875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=5.1e-08  Score=120.36  Aligned_cols=241  Identities=12%  Similarity=0.150  Sum_probs=160.7

Q ss_pred             EEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEecc-C-------------CCceEEEEEcCCCCeEEEEeC-CCeEE
Q 004737          454 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE-H-------------TQWITDVRFSPSLSRLATSSA-DRTVR  517 (732)
Q Consensus       454 ~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h-------------~~~V~~l~fspdg~~Lasgs~-Dg~I~  517 (732)
                      ..++++++ +.++++-..++.|++||... ..+..+.+ .             -.....|+|.+++..|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35788874 56667777788999999764 44444322 1             123578999998887666554 57899


Q ss_pred             EEecCCCCceeEEeecC-----------------CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----
Q 004737          518 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----  575 (732)
Q Consensus       518 IWDl~s~~~~~~~l~~h-----------------~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-----  575 (732)
                      ++|+.++.  +.++.+-                 -.....++|+|++..++++...++.|++||..++.......     
T Consensus       650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            99987643  3333211                 11346899999767788788888999999998775432110     


Q ss_pred             ----------ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-------------C--------CCCEE
Q 004737          576 ----------CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH  623 (732)
Q Consensus       576 ----------~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~-------------h--------~~~V~  623 (732)
                                .-.....++++|+++.++++.. ++.|++||+.++.......+             +        -....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      0123456999999986666554 68999999987653221100             0        11246


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE----------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          624 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE----------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       624 sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~----------~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      +++|+++|.++++.. ++.|++||..++........          ....-.....++++++|+.+++-+.++.|++||+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            899999998777666 88999999987521111100          0011135678999999987777777889999999


Q ss_pred             CCCeE
Q 004737          693 TENKT  697 (732)
Q Consensus       693 ~t~~~  697 (732)
                      .+++.
T Consensus       888 ~~~~~  892 (1057)
T PLN02919        888 NKGEA  892 (1057)
T ss_pred             CCCcc
Confidence            88765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=4.5e-08  Score=120.81  Aligned_cols=232  Identities=11%  Similarity=0.118  Sum_probs=156.4

Q ss_pred             EEEEEcCC-CCeEEEEeCCCeEEEEecCCCCceeEEeec--C------------CcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          496 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       496 ~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~--h------------~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      ..++++++ +.++++-+.++.|++||... .. +..+.+  .            -.....|++.++++.++++-..++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            46788874 56677777788999999864 32 222221  1            12357899998876666555556789


Q ss_pred             EEEECCCCeeeeEEec------------------cCCeeEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCC---
Q 004737          561 RYWSINNGSCAGVFKC------------------QSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGH---  618 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~------------------~~~i~~v~~sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h---  618 (732)
                      +++|+.++... ++..                  -.....++++|+++.++ +...++.|++||..++.... +.+.   
T Consensus       649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE  726 (1057)
T ss_pred             EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence            99999876533 2211                  11246799999555554 45567899999998775432 1110   


Q ss_pred             ------------CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEE-----------Eeec--------CCCc
Q 004737          619 ------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNK  665 (732)
Q Consensus       619 ------------~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~-----------~~~~--------~~~~  665 (732)
                                  -.....|+|+|++..|+++.  ++.|++||+.++.. ..+.           .+..        ....
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccC
Confidence                        12356799999998666665  77999999987532 1111           0000        0112


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccC--------------CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          666 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       666 I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h--------------~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ...++++++|..+++-..++.|++||..++...++.+.              -.....|+++++|+++++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            45889999998777777788999999998877644332              1357889999999988888899999999


Q ss_pred             C
Q 004737          732 K  732 (732)
Q Consensus       732 D  732 (732)
                      |
T Consensus       886 d  886 (1057)
T PLN02919        886 D  886 (1057)
T ss_pred             E
Confidence            6

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=7.1e-09  Score=105.19  Aligned_cols=242  Identities=12%  Similarity=0.097  Sum_probs=163.8

Q ss_pred             CCCeEEEEEcC---CCC-EEEEEECCCcEEEEEcCCCeEEEEeccCC------CceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          450 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       450 ~~~V~~lafSp---dg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~------~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +..+..+.|+.   +|. .++-+..+|.|.+|.....+....+++-.      ....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34466666654   455 46667778999999876555544444321      124578899989999999999999865


Q ss_pred             ecCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeE--EeccCCeeEEEEeCC-CCEEEE
Q 004737          520 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQPR-LGRILA  594 (732)
Q Consensus       520 Dl~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~--~~~~~~i~~v~~sp~-g~~ll~  594 (732)
                      +...... .+..++.|..+++...|+....+++++|++|+.+..||++ .++++..  ..+..+|.++.-+|. ..+|++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            5544332 2347889999999999998888999999999999999999 3444433  235677888887764 567899


Q ss_pred             EEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCeEEEEECCCCCCc--eeEEEeecCCCceEEE
Q 004737          595 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC  669 (732)
Q Consensus       595 ~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg--~~LasgsDg~I~IWDl~t~~~~--~~i~~~~~~~~~I~sl  669 (732)
                      |+.|..|++||.+. ++++..-. -.+.|+.++++|.-  ++|++|--.-.+|.+.......  ......+.|.+-.+.-
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence            99999999999995 56655443 45789999999953  3455555444667766654321  1333444555555555


Q ss_pred             EEeCCCCEEEEEEc-CCeEE-EEEC
Q 004737          670 VFHPTFPSLLVIGC-YETLE-LWNM  692 (732)
Q Consensus       670 ~fspdg~~L~sgs~-dg~I~-IwDl  692 (732)
                      .|.....+|++++. |+.++ +|-.
T Consensus       308 DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  308 DWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             ccccccceeeeeeccccceeeeeee
Confidence            66444455666543 33433 5543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.11  E-value=4e-09  Score=122.11  Aligned_cols=197  Identities=14%  Similarity=0.210  Sum_probs=156.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc----eEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      -.+.|....+.-+.+.++.+..++.+.+||...+.....+......    ..-+-++++.-++++|+.-+.|.+|+....
T Consensus        86 ~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d  165 (967)
T KOG0974|consen   86 FSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED  165 (967)
T ss_pred             ccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence            3445555677778889999999999999999887776665433221    112334666778999999999999999855


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--EEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~--~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      +.+. .+.+|.+.|..+.|+.+| .+++++++|..+++|++++.+...  .|.+...+..++|.|.  .+++++.|.+.+
T Consensus       166 n~p~-~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr  241 (967)
T KOG0974|consen  166 NKPI-RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR  241 (967)
T ss_pred             CCcc-eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE
Confidence            5433 689999999999999986 566799999999999999987765  4556778999999997  999999999999


Q ss_pred             EEECCCCeEEEEEcCCC-CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737          603 ILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       603 IwDl~t~~~i~~l~~h~-~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      +|+.+... ...+.+|. ..|..++..++...++++. |+.+++||+...
T Consensus       242 vW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  242 VWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99766443 33666664 4789999988888888888 999999998764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=2.9e-08  Score=107.98  Aligned_cols=271  Identities=16%  Similarity=0.200  Sum_probs=183.9

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC-----------CCeEEEEec
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDT  521 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-----------Dg~I~IWDl  521 (732)
                      =+-+.|||-|.||++--. .-|.+|--++...++.+. |.+ |.-+.|||..+||+|=+.           ...|+|||+
T Consensus       213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            456899999999999865 458899888877777774 664 899999999999998653           257999999


Q ss_pred             CCCCceeEEeec--CCcce-EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEc
Q 004737          522 ENPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       522 ~s~~~~~~~l~~--h~~~V-~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~  597 (732)
                      .++.. .+.+..  ....+ .-+.|+.|++++....  ...|.||+..+..++..-. ...+|....|+|.+..|+.-+.
T Consensus       290 ~tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp  366 (698)
T KOG2314|consen  290 ATGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP  366 (698)
T ss_pred             cccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence            99874 454443  22223 3457888865544333  3579999887644332111 2367889999999877766443


Q ss_pred             C-----CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC-----------eEEEEECCCCCCceeEEEeec
Q 004737          598 E-----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSC  661 (732)
Q Consensus       598 d-----g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg-----------~I~IWDl~t~~~~~~i~~~~~  661 (732)
                      .     ..+.+..+.++..+++..-+.-.=..+.|-.+|.||+.--|.           .+.|+.++....+....   .
T Consensus       367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v---e  443 (698)
T KOG2314|consen  367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV---E  443 (698)
T ss_pred             cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee---e
Confidence            2     367788888877776655444444457788889998864321           35566665543222122   2


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCC-CeEEEE--ccCCCCeeEEEEeCCCCEEEEEE---CCCeEEEeC
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTE-NKTLTL--SAHDKLVSSLAASTVNGMVASAS---HDKCVKIWK  732 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t-~~~~~~--~~h~~~V~sla~spdg~~LaSgs---~DG~I~IWD  732 (732)
                      ....|...+|-|.|..+++.+.+.   ++.+|.+++ .....+  .-.....+.+.|+|.|++++.+.   ..|.+.++|
T Consensus       444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence            356788999999998888776654   789998873 222211  11225578899999999888775   356666654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=3.7e-09  Score=109.06  Aligned_cols=228  Identities=18%  Similarity=0.248  Sum_probs=148.8

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc----eeEEeecC------------CcceEEEEEcCCCC-cEEEEE
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGH------------STTVMSLDFHPSKE-DLLCSC  554 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~----~~~~l~~h------------~~~V~sl~fspdg~-~llaSg  554 (732)
                      .+-|.+|.|...|.+||||..+|.|.+|.-+....    ....+..|            ...|..+.|.++++ ..+...
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45689999999999999999999999997553321    12233333            24688899987653 344456


Q ss_pred             eCCCcEEEEECCCCeeee---EEecc---CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-cCCCCCEEEEEE
Q 004737          555 DNNSEIRYWSINNGSCAG---VFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCW  627 (732)
Q Consensus       555 s~Dg~I~iWDl~t~~~i~---~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l-~~h~~~V~sla~  627 (732)
                      ..|.+|++|.+.......   .+...   ..++.+..      .+.+..+-.+.      ..+.+.+ ..|...|++|.+
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~------p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~  172 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL------PVEGRHDLEVE------ASPRRVYANAHTYHINSISV  172 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeec------eeeccccceee------eeeeeeccccceeEeeeeee
Confidence            679999999986543222   00000   11222111      01111111111      1223333 348889999999


Q ss_pred             eCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE---
Q 004737          628 NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL---  698 (732)
Q Consensus       628 spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~-----~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~---  698 (732)
                      +.|...++++.|=.|.+|++.-....--+..++.+.     .-|++..|+|.. ..++..++.|+|++-|++...+.   
T Consensus       173 NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  173 NSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             cCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence            999999999999999999997654333344444433     457888999976 56777888999999999843221   


Q ss_pred             ----E----------EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          699 ----T----------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       699 ----~----------~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                          .          +..--..|..+.|+++|+|+++-+. -+|+|||
T Consensus       253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD  299 (433)
T KOG1354|consen  253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD  299 (433)
T ss_pred             hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence                1          1112246899999999999997643 5799997

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=6.7e-08  Score=108.18  Aligned_cols=201  Identities=10%  Similarity=0.046  Sum_probs=135.5

Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc-EEEEEeC--CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCC
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG  590 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~-llaSgs~--Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~  590 (732)
                      ..|.+-|.+...  .+.+.... .+....|+|+++. ++++...  +..|+++|+.+++........+......|+|+++
T Consensus       169 ~~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence            356665665432  33333333 7889999999986 4433332  3579999999887766665555567789999999


Q ss_pred             EEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeC--C--eEEEEECCCCCCceeEEEeecCC
Q 004737          591 RILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD--E--LVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       591 ~ll~~s~---dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsD--g--~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                      .++....   +..|+++|+.++... .+..+........|+|||+.|+..++  +  .|+++|+.++......  .  ..
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~--~g  320 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--F--HG  320 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--c--CC
Confidence            8876544   357999999887643 34434433445689999998887773  3  7888898876431111  1  11


Q ss_pred             CceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737          664 NKFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       664 ~~I~sl~fspdg~~L~sgs~d---------g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                      ..  ...|+|+|++|+.....         ..|++.|+.++....+... .......|+|||+.|+....+
T Consensus       321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence            11  24899999999888754         2688999988877655543 233468999999977766643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.07  E-value=1.2e-07  Score=101.52  Aligned_cols=171  Identities=15%  Similarity=0.155  Sum_probs=133.7

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC-eEEEEecCCCCceeEEeecCCcceE
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM  539 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-~I~IWDl~s~~~~~~~l~~h~~~V~  539 (732)
                      +|.+++..+. |.+.|.+...+-.+..  +|...|.-..+..+++-++.|..|| .+-|||.+++.  .+.+...-+.|.
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceE
Confidence            6888888875 7777777665544433  5777799999998888999999999 99999999865  566666778999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCCCeEEEE
Q 004737          540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLK  614 (732)
Q Consensus       540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t~~~i~~  614 (732)
                      ++..+++|+.++ .+.....|.+.|+.++.....-+. .+-|+.+.|+|++.+++.+--+|    .|++||+..++....
T Consensus       406 av~vs~dGK~~v-vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         406 AVKVSPDGKKVV-VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEcCCCcEEE-EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            999999986555 666678999999999886654443 34489999999999999888776    699999998876554


Q ss_pred             EcCCCCCEEEEEEeCCCCEEEEEe
Q 004737          615 LQGHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       615 l~~h~~~V~sla~spdg~~Lasgs  638 (732)
                      -. ....=.+-+|.||+++|..-+
T Consensus       485 TT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         485 TT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cC-CcccccCcccCCCCcEEEEEe
Confidence            33 344456678999999877654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.07  E-value=7.4e-10  Score=133.01  Aligned_cols=189  Identities=15%  Similarity=0.301  Sum_probs=155.4

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      ++.|-..|.++.-+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+..|+.+..+..||.+.+|.+.. 
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p- 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP- 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-
Confidence            45566778899989988999999999999999999888877764 2347899999999999999999999999999983 


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEe---CCCcEEEEECCCC---eeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs---~Dg~I~iWDl~t~---~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                       .+......|......+.|-.   .++++++   +++.+.+||....   .++. .-+.++++++++.|....|++|+.+
T Consensus      2283 -k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2283 -KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             -cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence             45778888999999998884   4555553   5789999996432   2333 4466789999999999999999999


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      |.|++||++..+.+..+..         ++ ...+|++++ .|.|+||++...
T Consensus      2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence            9999999998877666653         44 567888888 999999999876

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=7.5e-08  Score=108.23  Aligned_cols=209  Identities=14%  Similarity=0.173  Sum_probs=154.3

Q ss_pred             eEEEEEecCCCCCeEEEEEcCC------C------CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC---CC
Q 004737          440 FTEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SL  504 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpd------g------~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp---dg  504 (732)
                      +..+..+..|...|+.+.|.|-      +      -+||++...|.|.|||...+..+..+..|.++|.+++|-+   +.
T Consensus        45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S  124 (1062)
T KOG1912|consen   45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS  124 (1062)
T ss_pred             hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence            4567889999999999999873      1      2478888889999999999999999999999999999976   34


Q ss_pred             -CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CeeeeEEec
Q 004737          505 -SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKC  576 (732)
Q Consensus       505 -~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~  576 (732)
                       ..|+.-....+|.+|+.+++.+ +..+........|+.+.|.+..-++.-+..|.|.+-+.-.       ++....-..
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence             4666667788999999999885 4444444456778999997766666666677777766421       111111110


Q ss_pred             c-C-----------------C--------eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737          577 Q-S-----------------G--------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       577 ~-~-----------------~--------i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd  630 (732)
                      + .                 +        ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-|+
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~  283 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD  283 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence            0 0                 0        123577888888888889999999999988888877766677777788776


Q ss_pred             C--CEEEEEe-CCeEEEEECCC
Q 004737          631 G--EYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       631 g--~~Lasgs-Dg~I~IWDl~t  649 (732)
                      +  ..|++.. ||.+.+|-.+.
T Consensus       284 ~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  284 PRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             CCcceEEEEecCCeEEEEEeec
Confidence            5  4666666 99888886554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.02  E-value=7.8e-07  Score=92.37  Aligned_cols=217  Identities=7%  Similarity=0.022  Sum_probs=144.7

Q ss_pred             EEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737          496 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV  573 (732)
Q Consensus       496 ~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs-pdg~~llaSgs~Dg~I~iWDl~t~~~i~~  573 (732)
                      .+++|.+ ++.++++-...+.|..|+..++..  ..+....  ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence            3678988 666677766789999999987653  2222222  6777777 55 4555 4443 4466679998876655


Q ss_pred             Eecc------CCeeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737          574 FKCQ------SGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       574 ~~~~------~~i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      ....      .....+++.++|+.+++....        |.|+.++.. ++...... .-...+.|+|+|+++.|+.+. 
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds  153 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS  153 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred             eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence            5531      236789999998866665543        568888888 55444333 345678999999999887665 


Q ss_pred             -CCeEEEEECCCCCC-c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEE
Q 004737          639 -DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA  712 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~-~---~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~  712 (732)
                       .+.|..|++..... .   ..+..+.......-.+++..+|+.+++....+.|.++|.. ++.+ .+......+++++|
T Consensus       154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred             ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence             77899999864332 1   2222333333357889999999977777778899999988 6666 34434468999999


Q ss_pred             e-CCCCEEEEE
Q 004737          713 S-TVNGMVASA  722 (732)
Q Consensus       713 s-pdg~~LaSg  722 (732)
                      . ++.+.|+..
T Consensus       233 gg~~~~~L~vT  243 (246)
T PF08450_consen  233 GGPDGKTLYVT  243 (246)
T ss_dssp             ESTTSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            5 565655544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=1.1e-09  Score=131.49  Aligned_cols=210  Identities=16%  Similarity=0.235  Sum_probs=166.3

Q ss_pred             CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCee
Q 004737          504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGAT  581 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~  581 (732)
                      +..+..+..++...-|..+...   ..++.+-..|.++.-+|....++ +|+.||.|++|....+..+..++.  ...++
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred             cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence            3445555556666666655433   33444556788998899865555 999999999999998888877764  35588


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEE
Q 004737          582 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~  657 (732)
                      .+.|+..|+.+.++..||.+.+|.+. .++....+.|......+.|-.  ..+++++    ++.+.+||..-.....+++
T Consensus      2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence            89999999999999999999999988 667777888998888888875  5566544    4589999987655545666


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                        .+|...++++++.|....|++|+.+|.|++||++..+++ ++..         ++ ...++++++..|.|+||+
T Consensus      2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence              789999999999999999999999999999999887765 2222         44 567999999999999996

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.01  E-value=7e-09  Score=107.17  Aligned_cols=245  Identities=13%  Similarity=0.206  Sum_probs=174.2

Q ss_pred             eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737          483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~  561 (732)
                      .....+++|.+.|++...-|...-+++.+.|.+++||--.+ +++-...+..-..+++++.+.++. ..|+.+-..|++.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEE
Confidence            34566789999999999999888899999999999996543 332222333345788999999884 5666888889998


Q ss_pred             EEECCC----CeeeeEE-eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737          562 YWSINN----GSCAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  636 (732)
Q Consensus       562 iWDl~t----~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Las  636 (732)
                      -+.+..    ....+.. .+...+..+.|+....++++.+.|..+.---.+.+..+..+. .....+++.+.-.  +...
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFV  170 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEe
Confidence            887642    2222222 245668888888888888888888776544444443221111 0001111111111  3344


Q ss_pred             Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEe
Q 004737          637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAS  713 (732)
Q Consensus       637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~s  713 (732)
                      |. .|.|.+-.+.... ...+..+.+|.+.+.++.|.+....++++.+|..|.+||+-.++-.  .+.+|...|..+...
T Consensus       171 Gd~~gqvt~lr~~~~~-~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNG-CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             cccccceEEEEEeecC-CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            44 5555555544322 2678889999999999999999999999999999999999765544  778999999999998


Q ss_pred             CCCCEEEEEECCCeEEEeC
Q 004737          714 TVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       714 pdg~~LaSgs~DG~I~IWD  732 (732)
                      +--+.+++++.||.|.+||
T Consensus       250 ~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             hhheeeeeccCCCeEEEEe
Confidence            8889999999999999996

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.99  E-value=5.7e-08  Score=97.50  Aligned_cols=250  Identities=9%  Similarity=0.009  Sum_probs=166.7

Q ss_pred             CCCcEEEEEcCCCe-EEEEeccCCCceEEEEEcC-----CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEE
Q 004737          470 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  543 (732)
Q Consensus       470 ~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~f  543 (732)
                      ....|-+|++.+.. .+..+.      +.+.|-|     ...+||.|+.-|...+|...+..........|...|+-+.=
T Consensus        50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r  123 (344)
T KOG4532|consen   50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR  123 (344)
T ss_pred             ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence            34567777765432 111111      3344544     44689999999999999999776555555555554443322


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-e-EEE-EEcCCC
Q 004737          544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ-V-CRL-KLQGHK  619 (732)
Q Consensus       544 spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~-~i~-~l~~h~  619 (732)
                      ..+...-+..++.|.++++++++-+......... -....+.+++++.+.++++....|..|.+... + .+. ......
T Consensus       124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~  203 (344)
T KOG4532|consen  124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS  203 (344)
T ss_pred             hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence            2222333446778889999888754433332221 23788999999999999999999999988754 2 222 233344


Q ss_pred             CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce--eEEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCC
Q 004737          620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTE  694 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~--~i~~~~~~~~~I~sl~fspdg~--~L~sgs~dg~I~IwDl~t  694 (732)
                      ..-.+..|+.....++++. ||++.|||++....+.  .-.....|.+.+..|.|++.|.  .|+..-.-+.+.+.|+++
T Consensus       204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            5567889999999999999 9999999999764322  2223445789999999998773  456666667899999998


Q ss_pred             CeEE--------EEccCCC-CeeEEEEeCCCCEEEEEECC
Q 004737          695 NKTL--------TLSAHDK-LVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       695 ~~~~--------~~~~h~~-~V~sla~spdg~~LaSgs~D  725 (732)
                      ++-.        ....|.. .|..-.|+.++..+.+.+++
T Consensus       284 ~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  284 YVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             CceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            8644        1223433 48888888877766655543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.99  E-value=2.2e-06  Score=89.04  Aligned_cols=217  Identities=14%  Similarity=0.171  Sum_probs=145.7

Q ss_pred             EEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc-CCCCeEEEEeCCCeEEEEecCCCCceeE-Ee
Q 004737          455 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLR-TF  531 (732)
Q Consensus       455 ~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs-pdg~~Lasgs~Dg~I~IWDl~s~~~~~~-~l  531 (732)
                      +++|.+ ++.++++--..+.|..|+..+++....- ...  ...+++. +++ .|+.+..++ +.++|..+++.... ..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            578888 6777777767899999999987665422 222  6677777 564 555555554 56669887653222 11


Q ss_pred             e--c-CCcceEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CC
Q 004737          532 T--G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN  599 (732)
Q Consensus       532 ~--~-h~~~V~sl~fspdg~~llaSgs~D--------g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg  599 (732)
                      .  . .....+.+++.++|+ +.++....        |.|..++.. ++.......-.....++|+|+++.|+++.. .+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence            1  1 345678999999986 55454432        568888887 666666655566889999999998876654 68


Q ss_pred             eEEEEECCC--C-----eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737          600 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF  671 (732)
Q Consensus       600 ~I~IwDl~t--~-----~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f  671 (732)
                      .|..||+..  .     +....+....+..-.+++..+|+++++.. .+.|.++|.. +   +.+..+......+++|+|
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence            899999863  2     11222333333588999999999877766 8899999987 4   566666655568999999


Q ss_pred             e-CCCCEEEEEE
Q 004737          672 H-PTFPSLLVIG  682 (732)
Q Consensus       672 s-pdg~~L~sgs  682 (732)
                      . ++.+.|++.+
T Consensus       233 gg~~~~~L~vTt  244 (246)
T PF08450_consen  233 GGPDGKTLYVTT  244 (246)
T ss_dssp             ESTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            4 6767777665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=5.7e-08  Score=109.16  Aligned_cols=238  Identities=14%  Similarity=0.192  Sum_probs=173.3

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC------------CeEEEEeCCCeEEE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRV  518 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg------------~~Lasgs~Dg~I~I  518 (732)
                      ..-.++.|+|.| +||.|+. ..|.|-|..+.+.+..++.|...|+.|+|.|..            -+||++...|.|.+
T Consensus        16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            336778999888 7888775 589999999999999999999999999998731            25777778899999


Q ss_pred             EecCCCCceeEEeecCCcceEEEEEcCC---CCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCC-CCEEE
Q 004737          519 WDTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR-LGRIL  593 (732)
Q Consensus       519 WDl~s~~~~~~~l~~h~~~V~sl~fspd---g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~-g~~ll  593 (732)
                      ||+.... .+..+..|.+++..++|-+.   .++++++-....+|.+|+..+|+....+..... ..|+.+.|- ..++.
T Consensus        94 ~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~  172 (1062)
T KOG1912|consen   94 VDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC  172 (1062)
T ss_pred             EEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence            9999765 36677888999999999763   346666666688999999999999887775444 456888884 45566


Q ss_pred             EEEcCCeEEEEECCC-------CeEEEEEcCCCC-------------------------CEEEEEEeCCCCEEEEE-eCC
Q 004737          594 AAAIENYISILDVET-------QVCRLKLQGHKN-------------------------QVHSVCWNTSGEYLASV-SDE  640 (732)
Q Consensus       594 ~~s~dg~I~IwDl~t-------~~~i~~l~~h~~-------------------------~V~sla~spdg~~Lasg-sDg  640 (732)
                      +.+..|.+.+.+.-.       ++....-..|..                         ....++|+|.-+.++.. -..
T Consensus       173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr  252 (1062)
T KOG1912|consen  173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR  252 (1062)
T ss_pred             EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence            667777777765431       222222222211                         01124678875544444 488


Q ss_pred             eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCC
Q 004737          641 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg--~~L~sgs~dg~I~IwDl~t  694 (732)
                      .+.|+|++-.   .++.......+.+.-+.+-|++  ..|++.-.||.+.+|-.+.
T Consensus       253 ellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  253 ELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            8999999776   6676666666666666776665  6799999999999996654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.90  E-value=1.2e-06  Score=89.85  Aligned_cols=215  Identities=13%  Similarity=0.028  Sum_probs=137.4

Q ss_pred             CCcEEEEEcCCCeEEEEeccC--CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC
Q 004737          471 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  548 (732)
Q Consensus       471 Dg~I~VWd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~  548 (732)
                      +|.|..||..+++.+....--  .....+. ..+++.++++++.++.|..||..+++. +..+.. ...+....... +.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~-~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVD-GG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEE-TT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeec-cc
Confidence            689999999999998777431  1222221 223566788888999999999998874 333332 22211111222 23


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEE-eccC----CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC--
Q 004737          549 DLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--  621 (732)
Q Consensus       549 ~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~----~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~--  621 (732)
                      .++ .+..++.|+.+|..+|+.+... ....    ..........++.++++..++.|..+|+++++.+.........  
T Consensus        78 ~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   78 RVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             ccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            444 5556789999999999999884 3221    1222333334788999999999999999999998887654322  


Q ss_pred             --------EEEEEEeCCCCEEEEEe-CCe-EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          622 --------VHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       622 --------V~sla~spdg~~Lasgs-Dg~-I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                              +.+-....++ .++.+. ++. +.+ |+.++   ..+....  ...+.. ....++..|++++.++.|++||
T Consensus       157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred             cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence                    1222233345 555555 775 555 99988   4332222  222222 2457778888888999999999


Q ss_pred             CCCCeEE
Q 004737          692 MTENKTL  698 (732)
Q Consensus       692 l~t~~~~  698 (732)
                      +++++.+
T Consensus       229 ~~tG~~~  235 (238)
T PF13360_consen  229 LKTGKVV  235 (238)
T ss_dssp             TTTTEEE
T ss_pred             CCCCCEE
Confidence            9999875

...

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.87  E-value=8.6e-09  Score=114.92  Aligned_cols=219  Identities=19%  Similarity=0.276  Sum_probs=156.9

Q ss_pred             eeecCCCceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCe-EEEEeccCCCceEEEEEcCCCCeEE
Q 004737          431 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLA  508 (732)
Q Consensus       431 ~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~fspdg~~La  508 (732)
                      +|.......-..-..+.+|...|+.+-|.+.. ..+++++.|..|..||+.+-. .+..+..-......|+|+.....+.
T Consensus        95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence            34443333333345688999999999999954 478999999999999998743 3444444445578899987555555


Q ss_pred             EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEeccCCeeEEEEe
Q 004737          509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQ  586 (732)
Q Consensus       509 sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~~~~~i~~v~~s  586 (732)
                      +.+..+.|+|||++.+..++..+++|...|..++|.......+.+++.|++|++||..+..  ..+.+....++..-++.
T Consensus       175 asshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  175 ASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL  254 (1081)
T ss_pred             hhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence            5667788999999999888999999999999999987766778899999999999987543  33444455667667777


Q ss_pred             CCCCEEEEEEc--CCeEEEE---------ECCC-CeEEEEEcCCCCCEEEEEEeCCC----------CEEEEEe-CCeEE
Q 004737          587 PRLGRILAAAI--ENYISIL---------DVET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVR  643 (732)
Q Consensus       587 p~g~~ll~~s~--dg~I~Iw---------Dl~t-~~~i~~l~~h~~~V~sla~spdg----------~~Lasgs-Dg~I~  643 (732)
                      |-|.-+++--.  +..+.++         +..+ ..++..|.+|...|...-|-..+          --|++-+ |..++
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr  334 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR  334 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence            75544333222  2233333         3333 36788999999988776664321          2477777 99999


Q ss_pred             EEECCC
Q 004737          644 VWSIGS  649 (732)
Q Consensus       644 IWDl~t  649 (732)
                      +|-+.+
T Consensus       335 lWpI~~  340 (1081)
T KOG0309|consen  335 LWPIDS  340 (1081)
T ss_pred             eeeccH
Confidence            998864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.86  E-value=4.8e-07  Score=100.86  Aligned_cols=305  Identities=12%  Similarity=0.179  Sum_probs=189.9

Q ss_pred             CeeeccccCCceeecc-CCCCCCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC
Q 004737          402 RFVDDGSLDDNVESFL-SPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  480 (732)
Q Consensus       402 ~~v~~gs~d~~v~~~~-s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~  480 (732)
                      .|+++|+.|+-++..- ..+..+...+ .    ......+.--+++.||+..|.-+.|+.....|-+...+|.|.||-+-
T Consensus        27 gyIAcgG~dGlLKVlKl~t~t~d~~~~-g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly  101 (1189)
T KOG2041|consen   27 GYIACGGADGLLKVLKLGTDTTDLNKS-G----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY  101 (1189)
T ss_pred             CeEEeccccceeEEEEccccCCccccc-c----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence            6888888888877762 2222221111 1    11122334457899999999999999998899999999999999887


Q ss_pred             CCeEEEEe--ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE----------------------------
Q 004737          481 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----------------------------  530 (732)
Q Consensus       481 t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~----------------------------  530 (732)
                      .+.-...+  ....+.|.+++|..||..++....||.|.|=.++.+..--+.                            
T Consensus       102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h  181 (1189)
T KOG2041|consen  102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH  181 (1189)
T ss_pred             cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence            66433222  124567889999999999988888887765444321100000                            


Q ss_pred             -----------------------eecCCcceEEEEEc--------CCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC
Q 004737          531 -----------------------FTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG  579 (732)
Q Consensus       531 -----------------------l~~h~~~V~sl~fs--------pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~  579 (732)
                                             +......|..+.|.        |+ ...++.|..+|.+.+..-.+......+...-.
T Consensus       182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~  260 (1189)
T KOG2041|consen  182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK  260 (1189)
T ss_pred             EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence                                   01111224445553        23 44566777777777665554444444444456


Q ss_pred             eeEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737          580 ATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  650 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~  650 (732)
                      +....|+++|..+++++.+.         .|.+|. .-|..+.+++.....|++++|-..|-.++.+-|+.|++=+++..
T Consensus       261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~  339 (1189)
T KOG2041|consen  261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE  339 (1189)
T ss_pred             eecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence            78899999999999887632         344443 34667778887888999999998898899888999999988764


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      -+.-.+.      .   .+.|.-.++-+    ..-.|.+||..+.+.. ....|   ..+++|+.+...|++-..||.|.
T Consensus       340 ykWgy~e------~---TvVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~i~  403 (1189)
T KOG2041|consen  340 YKWGYIE------E---TVVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGVIP  403 (1189)
T ss_pred             ceEEEee------e---EEEEEEccCCC----cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCCCc
Confidence            2211110      0   11111111000    0115889998877654 22222   34566666666666666666553

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.84  E-value=2.7e-06  Score=94.82  Aligned_cols=255  Identities=11%  Similarity=0.027  Sum_probs=155.0

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce--
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--  538 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V--  538 (732)
                      ++..++.++.++.+..+|.++|+.+...............  .+..++.++.++.|..+|..+++...+ +......+  
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~~~~~~~~  195 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWT-VNLDVPSLTL  195 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeee-ecCCCCcccc
Confidence            3456777888999999999999988766543321111122  244677788899999999998875333 22111000  


Q ss_pred             ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--------eeEEEEeC--CCCEEEEEEcCCeEEEEE
Q 004737          539 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILD  605 (732)
Q Consensus       539 ---~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--------i~~v~~sp--~g~~ll~~s~dg~I~IwD  605 (732)
                         .+....  +.. ++.+..++.+..+|..+++.+........        ...+..+|  .++.+++++.+|.++.+|
T Consensus       196 ~~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald  272 (394)
T PRK11138        196 RGESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD  272 (394)
T ss_pred             cCCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence               111111  123 44566789999999999887765542211        00111122  356788888899999999


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 004737          606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC  683 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~  683 (732)
                      ..+++.+.....  .....+..  .+..|+.++ ++.+..+|..+++   .+-..... .....+..+  .+.+|++++.
T Consensus       273 ~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~  343 (394)
T PRK11138        273 LRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDS  343 (394)
T ss_pred             CCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeC
Confidence            999987765432  11112222  344455555 9999999998873   22222111 111222222  2456889999


Q ss_pred             CCeEEEEECCCCeEE-EEccCCCCee-EEEEeCCCCEEEEEECCCeEEEeC
Q 004737          684 YETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       684 dg~I~IwDl~t~~~~-~~~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|.|+++|..+++.+ ........+. ...+.  +..|+.++.||.|+.++
T Consensus       344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT  392 (394)
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence            999999999999987 3332222232 22332  45788899999998764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=1e-08  Score=110.73  Aligned_cols=207  Identities=14%  Similarity=0.260  Sum_probs=147.8

Q ss_pred             EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737          485 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  558 (732)
Q Consensus       485 ~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg  558 (732)
                      +..+.+|...|..++--.+.+-|++++.|++|++|.++...      .+..++..|+.+|.++.|..+- ..+++|  ||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceeeec--cC
Confidence            34567899999998877788889999999999999987432      2356788999999999999773 445455  88


Q ss_pred             cEEEEECCCCeeeeEEe---ccCCeeEEEEeCC--CCEEEEE-EcCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEE
Q 004737          559 EIRYWSINNGSCAGVFK---CQSGATQMRFQPR--LGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW  627 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~--g~~ll~~-s~dg~I~IwDl~t~~~i~~l~-----~h~~~V~sla~  627 (732)
                      .|.+||.--+..+....   .++.+..+..-++  ...++++ +.+.+|+++|.+..+.+..++     +...-+.+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999987776654332   1233333433333  3334444 568899999999886665554     34456899999


Q ss_pred             eCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCeEE
Q 004737          628 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKTL  698 (732)
Q Consensus       628 spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I-wDl~t~~~~  698 (732)
                      .+.|+.++++- .|+|.+.|.+++   +.+..+...+.....++ .|....++....|.++.+ |...++...
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence            99999999877 999999999998   56665554443333333 345556777777888888 876665443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.81  E-value=1.1e-05  Score=98.17  Aligned_cols=265  Identities=14%  Similarity=0.177  Sum_probs=166.9

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCC---CeEEEEeccCCCceEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES---FTVKSTLEEHTQWITDV  498 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t---~~~~~~l~~h~~~V~~l  498 (732)
                      .-+.+|+|+-. |. +  ..+-+.-.+--.+++|-|.|.+||+.-.   ...|.+|.-..   ++....+......|..+
T Consensus       235 ~~R~iRVy~Re-G~-L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l  310 (928)
T PF04762_consen  235 SRRVIRVYSRE-GE-L--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL  310 (928)
T ss_pred             ceeEEEEECCC-ce-E--EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence            35778888755 31 1  1111222233457899999999998864   34566665332   22222222456689999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEecCCCCceeEE-ee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC----CCC----
Q 004737          499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI----NNG----  568 (732)
Q Consensus       499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~-l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl----~t~----  568 (732)
                      .|++|+..||....|. |.+|-..+...-++. +. .....+..+.|+|.....|.....+|.+..+++    ..+    
T Consensus       311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~  389 (928)
T PF04762_consen  311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS  389 (928)
T ss_pred             EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence            9999999999987665 999998876543332 22 223345669999987776666666566655443    111    


Q ss_pred             ------------e----------------eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--------E
Q 004737          569 ------------S----------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC--------R  612 (732)
Q Consensus       569 ------------~----------------~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~--------i  612 (732)
                                  .                +...+.....|.+++|++++..+++...||.|.+|.......        .
T Consensus       390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~  469 (928)
T PF04762_consen  390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL  469 (928)
T ss_pred             ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh
Confidence                        0                112333456789999999988899999999999998543211        1


Q ss_pred             EEE----------cCCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          613 LKL----------QGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       613 ~~l----------~~h~~~V~sla~spdg~~Lasgs-D---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      ..+          ......+..++|..+..+++... +   ..+.++++........+.........+..+...++...+
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (928)
T PF04762_consen  470 SSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSL  549 (928)
T ss_pred             hhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEE
Confidence            111          11234678899988887777666 4   378888885543333444444445556555566665556


Q ss_pred             EEEEcCCeEEEEECCC
Q 004737          679 LVIGCYETLELWNMTE  694 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t  694 (732)
                      ++-..+|.|+.++...
T Consensus       550 ~~q~~~G~v~~~~~~~  565 (928)
T PF04762_consen  550 YIQTNDGKVFQLSSDG  565 (928)
T ss_pred             EEEECCCEEEEeecCC
Confidence            7777788877665544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=5.3e-08  Score=103.73  Aligned_cols=251  Identities=14%  Similarity=0.139  Sum_probs=175.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC---CeEEEEeccCCCceEEEEEcCCCCeEEEEeC-CCeEEEEecCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENP  524 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~  524 (732)
                      |.+.|+.|..+ -.+++.+++.||.++.|.-..   -+.+..+..|...|..++.+-++..+.|.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            77778877665 456999999999999997543   2445566789999999999999999999877 999999999875


Q ss_pred             Cce-eEEeecCCcceEEEEEcCCC-C-cEEEEEeCCCcEEEEECCCCeeeeEE---eccCCeeEEEEeCCCCEEEEEEcC
Q 004737          525 DYS-LRTFTGHSTTVMSLDFHPSK-E-DLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       525 ~~~-~~~l~~h~~~V~sl~fspdg-~-~llaSgs~Dg~I~iWDl~t~~~i~~~---~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      ... ...+..-.+.+.+ ..++.. . .+.++.-.++.|.++|-....|...+   .+..+|.++.+.+-+..+++....
T Consensus        87 DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            532 1112212222222 122221 1 33444557889999998765433222   245779999999999999999999


Q ss_pred             CeEEEEECCC------CeEEEE---------EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE----
Q 004737          599 NYISILDVET------QVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE----  658 (732)
Q Consensus       599 g~I~IwDl~t------~~~i~~---------l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~----  658 (732)
                      |.|..|..+.      .+....         +...+....++.|+|++..+.+-+ |..|+++++++++....+.+    
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~  245 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD  245 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence            9999998873      111111         222345678999999999999988 88999999998743222211    


Q ss_pred             -------------------------eecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 004737          659 -------------------------LSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA  702 (732)
Q Consensus       659 -------------------------~~~~-~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~  702 (732)
                                               +..+ ...-..++|...+++|+.++-=| |++.++.++.+.++.+
T Consensus       246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence                                     1111 12346778999999999887665 8888998888775443

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=3.8e-09  Score=119.43  Aligned_cols=265  Identities=14%  Similarity=0.188  Sum_probs=179.9

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--eE
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV  516 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I  516 (732)
                      .|+.+++++.|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+-+.=+.||..+++.+.-.  ..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            4667788999999999999999999999999999999999999999999999999999999999999877765433  47


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-----cCCeeEEEEeCCCCE
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR  591 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-----~~~i~~v~~sp~g~~  591 (732)
                      .+|++.+-......|.    .-.++.|+..-... +.|.......+||+.++..+.++-.     ...-.+..|+|+...
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHHHH-HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            8999886433334443    34677887542222 2344445689999999876655321     122467889999776


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF  671 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f  671 (732)
                      ++-   ||  .+||++....+..|...... ..-.|+|.|.-++.-+    .|||+++.   +.++.....  .-..+.|
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~L--dqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPSL--DQCAVTF 1309 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec----hhhhhHHH---HHHhcCccc--cceEEEe
Confidence            653   33  57999988777766544322 2346899998877643    69999987   344333211  1234566


Q ss_pred             eCCCCEEEEEEc--C---------------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          672 HPTFPSLLVIGC--Y---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       672 spdg~~L~sgs~--d---------------g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      ...|..++..-.  |               ...+-||....+.+........|..++-++...++...-
T Consensus      1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence            666664443320  0               023444444444444444555677777777776666543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.80  E-value=4.3e-08  Score=103.54  Aligned_cols=124  Identities=17%  Similarity=0.186  Sum_probs=93.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      ...|+.+..+........++....+.+|....+...- +-+|-..+++|+|+||+++|+++..|..|+|-.+......-.
T Consensus       110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies  188 (390)
T KOG3914|consen  110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES  188 (390)
T ss_pred             cceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence            3344444443333333334555667777766644443 348999999999999999999999999999988876554344


Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC  576 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~  576 (732)
                      .+.||+.-|..++..++  +.|++++.|++|++||+.+++++.++..
T Consensus       189 fclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  189 FCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             hccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccch
Confidence            56789999999999876  5577999999999999999999877653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.75  E-value=4.3e-06  Score=85.72  Aligned_cols=211  Identities=12%  Similarity=0.056  Sum_probs=133.8

Q ss_pred             CCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCE
Q 004737          513 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR  591 (732)
Q Consensus       513 Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~  591 (732)
                      +|+|..||..+++...+.-.+. .....+..+ +++..++ +++.++.|+.||..+|+.+..+.....+.... ...++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence            6889999998877533332211 122221122 2334444 55789999999999999998888755533332 334577


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEE-cCCC---CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc-
Q 004737          592 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK-  665 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l-~~h~---~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~-  665 (732)
                      +++++.++.|+.+|.++++.+... ....   ..........++..++++. ++.|..+|++++   +.+......... 
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~  155 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence            888888999999999999988874 3221   1112223333377777777 899999999998   555555443322 


Q ss_pred             ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          666 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       666 ---------I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                               +..-.+..++ .++++..++.+..+|+.+++.+- ......+..+ ...++..|+.++.|+.|.+||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence                     1222233344 78888888864444999999763 2223333332 356778888888999999886

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=1.2e-07  Score=96.78  Aligned_cols=234  Identities=18%  Similarity=0.291  Sum_probs=148.4

Q ss_pred             CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce----eEEeecCC------------cceEEEEEcCC-CCcEEEE
Q 004737          491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS  553 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~----~~~l~~h~------------~~V~sl~fspd-g~~llaS  553 (732)
                      ..+.|++|.|...|.||++|...|.|.+|.-+....+    ...+.+|.            ..|..|.|..+ +..-+..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3456999999999999999999999999986643311    12234443            35778888754 3344445


Q ss_pred             EeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEE--------E-cCCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737          554 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA--------A-IENYISILDVETQVCRLKLQGHKNQVHS  624 (732)
Q Consensus       554 gs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~--------s-~dg~I~IwDl~t~~~i~~l~~h~~~V~s  624 (732)
                      .+.|.+|++|.+.......+..  ...+.-.-+|.++-+.+.        + .|..|..+     .+...-..|...|.+
T Consensus       105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNS  177 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINS  177 (460)
T ss_pred             ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeee
Confidence            6679999999997543221111  111111111211111100        0 01111111     111112458889999


Q ss_pred             EEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE
Q 004737          625 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       625 la~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~-----~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      |.|..|...++++.|=.|.+|++.-....-.+..++.|.     ..|++..|+|.. ..+...++.|.|++-|++...+.
T Consensus       178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            999999999999889999999997655434444555443     347888999975 45667778899999999733211


Q ss_pred             ---------EE--------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          699 ---------TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       699 ---------~~--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                               .+        ..-...|..+.|+++|++|++-+. -+|+|||
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD  307 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD  307 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence                     11        122356889999999999987654 5799997

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.71  E-value=5.6e-06  Score=84.68  Aligned_cols=227  Identities=17%  Similarity=0.191  Sum_probs=132.4

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEec---cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          456 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       456 lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      ++.+.||++||..- |..|.|=..++.  ..+.+..   ...-.=..++|+||+..||.+...|+|++||+....  +..
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV   79 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence            57788999888764 667777655431  1222222   222234679999999999999999999999998533  222


Q ss_pred             eec-------CCcceEEEEEcCCC-----CcEEEEEeCCCcEEEEECCC-----CeeeeEEe----ccCCeeEEEEeCCC
Q 004737          531 FTG-------HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFK----CQSGATQMRFQPRL  589 (732)
Q Consensus       531 l~~-------h~~~V~sl~fspdg-----~~llaSgs~Dg~I~iWDl~t-----~~~i~~~~----~~~~i~~v~~sp~g  589 (732)
                      +..       -...|..+.|.+-.     ...|++-..+|.++-|-+..     .+....+.    ...+|.++.|+|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            211       23456677776432     22333455577777776532     22333333    24579999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC---CEEEEEeCC------eEEEEECCCCCCceeEEEee
Q 004737          590 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG---EYLASVSDE------LVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       590 ~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg---~~LasgsDg------~I~IWDl~t~~~~~~i~~~~  660 (732)
                      +.|++++....      +++.    -......+++-..-.+.   +.+....|+      +..+|.+-+.   .......
T Consensus       160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~  226 (282)
T PF15492_consen  160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG  226 (282)
T ss_pred             CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence            98888876432      0000    00011112221111111   111111111      1123333221   1222223


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      .....|..+..||||..|++...+|.|.+|++.+-+..
T Consensus       227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            34678999999999999999999999999999887665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.69  E-value=4.7e-06  Score=92.86  Aligned_cols=253  Identities=8%  Similarity=0.053  Sum_probs=151.8

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCC----------ceE-EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----------~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      +..+++++.++.|.-+|.++|+.+-.......          .+. .+..  ++..++.++.++.+..+|.++++...+ 
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ-  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc-
Confidence            55777778889999999999988766542210          000 1111  355677888999999999998875332 


Q ss_pred             eecCCcceEE-EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe------eEEEEeCCCCEEEEEEcCCeEEE
Q 004737          531 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       531 l~~h~~~V~s-l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i------~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      .... ..+.+ ..+. + . .++.+..++.|..+|.++|+.+..+....+.      .....  .++.+++++.++.+..
T Consensus       146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a  219 (394)
T PRK11138        146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSA  219 (394)
T ss_pred             ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEE
Confidence            2222 22221 1222 2 2 3446677899999999999998877643221      11111  2356788888999999


Q ss_pred             EECCCCeEEEEEcCCCC-------CEEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004737          604 LDVETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  673 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~-------~V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp  673 (732)
                      +|..+++.+........       ....+..+|  .+..++.++ ++.+..+|..+++   .+-....  .....+.  .
T Consensus       220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~--~~~~~~~--~  292 (394)
T PRK11138        220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREY--GSVNDFA--V  292 (394)
T ss_pred             EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecC--CCccCcE--E
Confidence            99999877655431100       011111122  233444444 8999999999884   3322211  1111122  2


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          674 TFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+..+++++.++.|+.+|..+++.+ ....- .....+..+  .+.+|+.++.||.|.+.|
T Consensus       293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence            4567888999999999999999876 22111 111222222  255777888888887654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.68  E-value=1.1e-05  Score=88.59  Aligned_cols=259  Identities=14%  Similarity=0.122  Sum_probs=154.0

Q ss_pred             cCCCCEEEEEE---------CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          459 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       459 Spdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      |||+++++...         ..+.+.|||+++++....... ...+....|+|+|+.+|... ++.|.+++..++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            67888877642         246789999999766544433 56789999999999999885 67899999876542222


Q ss_pred             Eeec-------C---------CcceEEEEEcCCCCcEEEEEeCCCcEE--------------------------------
Q 004737          530 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSEIR--------------------------------  561 (732)
Q Consensus       530 ~l~~-------h---------~~~V~sl~fspdg~~llaSgs~Dg~I~--------------------------------  561 (732)
                      +..+       -         -+.-..+-|+||+..+++.--++..|.                                
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2222       0         112356889999988776554444333                                


Q ss_pred             ---EEECCCCeeeeEE-e-----ccCCeeEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEEcC-CCCCE---E
Q 004737          562 ---YWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQG-HKNQV---H  623 (732)
Q Consensus       562 ---iWDl~t~~~i~~~-~-----~~~~i~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~-h~~~V---~  623 (732)
                         |+|+.+++....- .     ...-+..+.|.+++..+++.-.+.     .+.++|..++.+...+.. ....|   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence               3444444332111 0     111267788989887555544322     577788877644333221 23333   3


Q ss_pred             EEEEe-CCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEC
Q 004737          624 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM  692 (732)
Q Consensus       624 sla~s-pdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~d-----g~I~IwDl  692 (732)
                      .+.|. +++..++..+  ||  .|.+++...+    ....+......|.. +.+++++..|+..+..     ..|+..++
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~  314 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL  314 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence            55554 6665555444  77  6667776664    23355555556644 6788888777665553     26777888


Q ss_pred             C-CCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          693 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       693 ~-t~~~~~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      . .+....+......-..+.|||++++++-..
T Consensus       315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            8 777766655444436999999999777543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.66  E-value=4.3e-05  Score=80.43  Aligned_cols=230  Identities=14%  Similarity=0.115  Sum_probs=152.5

Q ss_pred             eEEEEEcC-CCCEEEEEECCC-cEEEEEcCCCeEEEEeccCCCceE--EEEEcCCCCeEEEEeC-----CCeEEEEecCC
Q 004737          453 VESCHFSP-DGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN  523 (732)
Q Consensus       453 V~~lafSp-dg~~Lasgs~Dg-~I~VWd~~t~~~~~~l~~h~~~V~--~l~fspdg~~Lasgs~-----Dg~I~IWDl~s  523 (732)
                      ...++.+| +...++.+-.-| ...+||..+++....+....+.-.  .-+|++||++|++.-.     .|.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34578888 555667776665 467899999998877754333221  3579999999998743     58999999995


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEe-----------------CCCcEEEEECCCCeeeeEEec-----cCCee
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGAT  581 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-----------------~Dg~I~iWDl~t~~~i~~~~~-----~~~i~  581 (732)
                      .-..+..+..|.-....+.+.||++.|++.-+                 .+-.+.+.|..+|+.+.....     ...+.
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR  166 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR  166 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence            55556677777767788889999877765432                 122466677888888876553     23588


Q ss_pred             EEEEeCCCCEEEEEEcCC-------eEEEEECCCCeEEEEE-----cCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 004737          582 QMRFQPRLGRILAAAIEN-------YISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSI  647 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~dg-------~I~IwDl~t~~~i~~l-----~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl  647 (732)
                      .+++..+|..++..-..|       -|.+++....-.....     ..-...|-+|+++.++.++++.+  .+.+.+||.
T Consensus       167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            899999976666655444       2444444332111111     12346899999999999998888  779999999


Q ss_pred             CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                      .++   ..+....  -..+..++..+++  +++.+..|.+..
T Consensus       247 ~tg---~~~~~~~--l~D~cGva~~~~~--f~~ssG~G~~~~  281 (305)
T PF07433_consen  247 ATG---RLLGSVP--LPDACGVAPTDDG--FLVSSGQGQLIR  281 (305)
T ss_pred             CCC---CEeeccc--cCceeeeeecCCc--eEEeCCCccEEE
Confidence            988   4444332  2234445555555  455555555433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.63  E-value=4.4e-07  Score=90.94  Aligned_cols=179  Identities=12%  Similarity=0.173  Sum_probs=112.9

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-eEEEEeccCCCceEEEEEcCCCC
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      .....|+-..+  ...+.++..|.++=.+-+.+--+..++++..||.+.+++.+.- ...+.+......-.+.++...++
T Consensus        68 ~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~  145 (319)
T KOG4714|consen   68 RCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN  145 (319)
T ss_pred             EEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc
Confidence            33444544433  2345555566665555555666778999999999999998751 11122211111112223333444


Q ss_pred             eEEEEe-----CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccC
Q 004737          506 RLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQS  578 (732)
Q Consensus       506 ~Lasgs-----~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~  578 (732)
                      .+.++.     .-+..++|+++-.+....... ....|.+++-+|...+++++|+.||.+-+||.+....... ++ ++.
T Consensus       146 ~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~  224 (319)
T KOG4714|consen  146 SILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA  224 (319)
T ss_pred             EEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh
Confidence            444432     123456677664332122222 2234999999999899999999999999999987643322 22 456


Q ss_pred             CeeEEEEeCC-CCEEEEEEcCCeEEEEECCC
Q 004737          579 GATQMRFQPR-LGRILAAAIENYISILDVET  608 (732)
Q Consensus       579 ~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t  608 (732)
                      ++..+.|+|. ...|++++.||.+..||..+
T Consensus       225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            7899999985 56799999999999999876

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.7e-06  Score=91.48  Aligned_cols=251  Identities=14%  Similarity=0.152  Sum_probs=148.6

Q ss_pred             EEEEEcCCCeEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEE
Q 004737          474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  552 (732)
Q Consensus       474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~lla  552 (732)
                      |++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|.-+..++++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence            67777667776677788899999999999766 78889999999999999865 46667766 78999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeee-EEec---cCCeeEEE------EeCCCCEEEEEEcCCeEEEEECC----CCeEEEEEcCC
Q 004737          553 SCDNNSEIRYWSINNGSCAG-VFKC---QSGATQMR------FQPRLGRILAAAIENYISILDVE----TQVCRLKLQGH  618 (732)
Q Consensus       553 Sgs~Dg~I~iWDl~t~~~i~-~~~~---~~~i~~v~------~sp~g~~ll~~s~dg~I~IwDl~----t~~~i~~l~~h  618 (732)
                      .|..+|.|.|||++..+-.. .+..   ..++..++      ..+.++.+++...+  +..|++.    ...++..+. .
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~  329 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P  329 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence            99999999999998654221 1111   12233332      23334445444433  2233322    222322222 2


Q ss_pred             CCCEEEEEEeCCCCEEEEEe--CC---eEEE----EECCCCCCceeEEEeecC-CCce------EEEEEeCCCCEEEEEE
Q 004737          619 KNQVHSVCWNTSGEYLASVS--DE---LVRV----WSIGSGSKGECIHELSCT-GNKF------HSCVFHPTFPSLLVIG  682 (732)
Q Consensus       619 ~~~V~sla~spdg~~Lasgs--Dg---~I~I----WDl~t~~~~~~i~~~~~~-~~~I------~sl~fspdg~~L~sgs  682 (732)
                      .+...++..++..+.++...  +.   .++.    -|..++.  .....-..+ +.+-      ..+.-.++..+++..+
T Consensus       330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g  407 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG  407 (463)
T ss_pred             CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc--eeeeecccccCCcccccccccceeccccccEEEEec
Confidence            44555555555444443332  11   1111    1111111  000111111 1110      1122234445544444


Q ss_pred             c-CCeEEEEECCCCeEEEEccCCCCeeEEEEeCC--CCEEEEEECCCeEEEeC
Q 004737          683 C-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK  732 (732)
Q Consensus       683 ~-dg~I~IwDl~t~~~~~~~~h~~~V~sla~spd--g~~LaSgs~DG~I~IWD  732 (732)
                      . .+.+.+||..+.+.+....-..+|.+++....  +.+|++-. |..++||+
T Consensus       408 d~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk  459 (463)
T KOG1645|consen  408 DSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK  459 (463)
T ss_pred             CCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence            3 44899999999999865566688988886543  23666554 55677764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.2e-06  Score=92.60  Aligned_cols=244  Identities=15%  Similarity=0.132  Sum_probs=153.1

Q ss_pred             EEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC-CeEEEEeCCCeEEEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVW  519 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IW  519 (732)
                      ....+++|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..| ..+++++|.-|. ++|+.|-..|.|.||
T Consensus       185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy  263 (463)
T KOG1645|consen  185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY  263 (463)
T ss_pred             hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence            3456888999999999999877 7889999999999999999999888888 789999998764 567778889999999


Q ss_pred             ecCCCCceeEEeec--CCcceEEEEEc------CCCCcEEEEEeCCCcEEEEECCC----CeeeeEEeccCCeeEEEEeC
Q 004737          520 DTENPDYSLRTFTG--HSTTVMSLDFH------PSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP  587 (732)
Q Consensus       520 Dl~s~~~~~~~l~~--h~~~V~sl~fs------pdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~~~~~i~~v~~sp  587 (732)
                      |++.....+..+.+  ...+|..++.-      +.+ .+++....  .+.+|++..    ..++..+...+...++.+.+
T Consensus       264 D~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  264 DMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99987654444433  22344444332      222 23333322  355676542    22333444445566777777


Q ss_pred             CCCEEEEEEcCC-------eE-EEEECCCCeEEEEEc-CCCC-C------EEEEEEeCCCCEEEEEe--CCeEEEEECCC
Q 004737          588 RLGRILAAAIEN-------YI-SILDVETQVCRLKLQ-GHKN-Q------VHSVCWNTSGEYLASVS--DELVRVWSIGS  649 (732)
Q Consensus       588 ~g~~ll~~s~dg-------~I-~IwDl~t~~~i~~l~-~h~~-~------V~sla~spdg~~Lasgs--Dg~I~IWDl~t  649 (732)
                      ..+++++....+       .| .-.|-.++..+...+ ++.+ .      -..+.-.++..+|+..+  .+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            667777665531       11 112333444333221 1211 0      01122234566666655  45899999998


Q ss_pred             CCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 004737          650 GSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fs-pdg~~L~sgs~dg~I~IwDl~  693 (732)
                      .   +.+..+... .+|..++.. -++..++..-.|..++||..+
T Consensus       421 ~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  421 F---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             h---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence            7   566665543 667666543 345545555666778887654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.61  E-value=1.1e-06  Score=93.09  Aligned_cols=157  Identities=18%  Similarity=0.216  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE--EeecCCcceEEEEEcCCCCcEEE--EEeCCCcEEEEECCCCee
Q 004737          495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLC--SCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~--~l~~h~~~V~sl~fspdg~~lla--Sgs~Dg~I~iWDl~t~~~  570 (732)
                      +..+.+++++++||++..++.+.++++.......+  ....-...-+++.|..+....++  ..++...+.+|.+..+.+
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~  144 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC  144 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence            44556677888888888888877777765432111  11112223345555544444332  233445566666666777


Q ss_pred             eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECC
Q 004737          571 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG  648 (732)
Q Consensus       571 i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l-~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~  648 (732)
                      ...+.+-.-+..++|+||+.+|+++..|..|+|-.......+..+ -||+..|..++.-++.. |++++ |++|++||+.
T Consensus       145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT  223 (390)
T ss_pred             chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence            777777778999999999999999999999999877765555444 46999999999986655 55555 9999999999


Q ss_pred             CCCC
Q 004737          649 SGSK  652 (732)
Q Consensus       649 t~~~  652 (732)
                      +++.
T Consensus       224 sgk~  227 (390)
T KOG3914|consen  224 SGKL  227 (390)
T ss_pred             cCCc
Confidence            9843

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=8e-07  Score=94.94  Aligned_cols=209  Identities=16%  Similarity=0.145  Sum_probs=149.1

Q ss_pred             eEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEecc--CCCceEEEEEcCC-C-CeEEEE-eCC
Q 004737          440 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPS-L-SRLATS-SAD  513 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~--h~~~V~~l~fspd-g-~~Lasg-s~D  513 (732)
                      ..-+..++.|-..|.+++.+-|+.++++.+. |..++++|+++...+.-++-  -.+.+.++ .++. - ..|+++ -.+
T Consensus        43 vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~s  121 (558)
T KOG0882|consen   43 VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKS  121 (558)
T ss_pred             eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccC
Confidence            3456778899999999999999999999777 99999999998766644322  22222221 2221 1 133333 357


Q ss_pred             CeEEEEecCCCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC------CeeeeEE----------ec
Q 004737          514 RTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GSCAGVF----------KC  576 (732)
Q Consensus       514 g~I~IWDl~s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t------~~~i~~~----------~~  576 (732)
                      +.|.|+|-....+.. ..-.-|..+|.++.+.+.++..+ +....|.|..|....      .+....+          +.
T Consensus       122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~  200 (558)
T KOG0882|consen  122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA  200 (558)
T ss_pred             CCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence            899999977655333 34455899999999999875544 888889999999872      2222222          23


Q ss_pred             cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------------------------------CCCC-CEE
Q 004737          577 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------------------------------GHKN-QVH  623 (732)
Q Consensus       577 ~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--------------------------------~h~~-~V~  623 (732)
                      .....++.|+|++..+.+-+.|..|++++.++++.+..+.                                .|.. .-+
T Consensus       201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~  280 (558)
T KOG0882|consen  201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT  280 (558)
T ss_pred             ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence            3457899999999999999999999999999887654432                                1111 235


Q ss_pred             EEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737          624 SVCWNTSGEYLASVSDELVRVWSIGSG  650 (732)
Q Consensus       624 sla~spdg~~LasgsDg~I~IWDl~t~  650 (732)
                      .++|...+++|+.+.==-|+|.++.++
T Consensus       281 ~~~fdes~~flly~t~~gikvin~~tn  307 (558)
T KOG0882|consen  281 NAVFDESGNFLLYGTILGIKVINLDTN  307 (558)
T ss_pred             eeEEcCCCCEEEeecceeEEEEEeecC
Confidence            678889999999888445899999887

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.58  E-value=1.2e-05  Score=95.29  Aligned_cols=244  Identities=11%  Similarity=0.151  Sum_probs=152.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      .+.|.++.|.-+..-++.+..+|.|.+-|.++.... ....-...|.+++|+||...++..+.++++.+-.-.=.-...+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            367999999999999999999999999988875443 2233456799999999999999998888887654321000001


Q ss_pred             Eee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCCeeEEEEeCCCCEEEEEEc----C-Ce
Q 004737          530 TFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NY  600 (732)
Q Consensus       530 ~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~----d-g~  600 (732)
                      .+.   ...+....+-|-.....+  -|+ .|.....+... .+.......+..-+.+.|--||.++++...    + ..
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            110   011223344443321111  111 22222221111 111111123455677999999988887432    3 78


Q ss_pred             EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737          601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                      |+|||.+ +..-..-....+--.+++|-|.|..+++..    |+.|.+|.-..-........+......+..++|..++.
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence            9999988 432222222334456899999999998854    56799998765544444444444455599999999999


Q ss_pred             EEEEE---EcCCeEEEEECCCCeEE
Q 004737          677 SLLVI---GCYETLELWNMTENKTL  698 (732)
Q Consensus       677 ~L~sg---s~dg~I~IwDl~t~~~~  698 (732)
                      .|++.   .....|++|-+.+....
T Consensus       303 iLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             ceeeeecccccceEEEEEecCeEEE
Confidence            88883   34446999998876544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.57  E-value=1.3e-05  Score=80.96  Aligned_cols=186  Identities=10%  Similarity=0.028  Sum_probs=130.1

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eE-EeecCCcceEEE
Q 004737          464 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LR-TFTGHSTTVMSL  541 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~-~l~~h~~~V~sl  541 (732)
                      -+..++.|.++++.+++.+.....+....-.+..+++++|++++++.+....|..|.++..... ++ .....++.-.+.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            3666778888888888765444443222233889999999999999999999999999865433 33 233344556788


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------ccCCeeEEEEeCCCC--EEEEEEcCCeEEEEECCCCeEEE
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRL  613 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------~~~~i~~v~~sp~g~--~ll~~s~dg~I~IwDl~t~~~i~  613 (732)
                      .|+.. ...+|++..||++.|||++.........      +.+.+..+.|++.|.  .|+..-.-+.+.+.|+++++...
T Consensus       210 S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  210 SFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             eeccC-cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            88877 4678899999999999998754433222      446688999998654  34445456899999999985443


Q ss_pred             EEc-------CCCC-CEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737          614 KLQ-------GHKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG  650 (732)
Q Consensus       614 ~l~-------~h~~-~V~sla~spdg~~LasgsDg~I~IWDl~t~  650 (732)
                      .+.       .|.. .|..-+|+.++.-+.+..+..+.-|++.+.
T Consensus       289 ~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr  333 (344)
T KOG4532|consen  289 VIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR  333 (344)
T ss_pred             EEecCccccccccccccccccccCCCcccccccchhhheeecccc
Confidence            332       1222 377888888887777777666677776553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=3.7e-08  Score=111.69  Aligned_cols=200  Identities=17%  Similarity=0.264  Sum_probs=149.1

Q ss_pred             CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC-cE
Q 004737          482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI  560 (732)
Q Consensus       482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-~I  560 (732)
                      ++..++|+.|+...+|++|+-+.++|+.|+..|.|++|++.++. ....+.+|...|+.+.-+.+|..+|.+++... -.
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchH
Confidence            45566778899999999999999999999999999999999987 46778899999999999999988887766555 57


Q ss_pred             EEEECCC-CeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-C---CCCCEEEEEEeCCCCEEE
Q 004737          561 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-G---HKNQVHSVCWNTSGEYLA  635 (732)
Q Consensus       561 ~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~---h~~~V~sla~spdg~~La  635 (732)
                      .+|++.. +...+.|   ....++.|+.....-+.|+......+||+.++.+..++- +   ....-++..|+|+..+|+
T Consensus      1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            7899864 3333333   345678888775666677777889999999987665522 1   122337789999988776


Q ss_pred             EEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          636 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       636 sgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      -  ||  .+||++..   ..++.+.... ....-.|+|.|.-+++-+     .|||+++.+.+
T Consensus      1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence            4  44  58999876   4455444322 122337999998777743     58999988765

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.54  E-value=1.4e-05  Score=89.52  Aligned_cols=222  Identities=12%  Similarity=0.133  Sum_probs=126.2

Q ss_pred             cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004737          490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  569 (732)
Q Consensus       490 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~  569 (732)
                      ...-....+.++|++++++++ .||...||......  .+.    .+....++|.+.+ . +|+-.....|.++.--+.+
T Consensus        30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n-~-yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRN-R-YAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSS-E-EEEE-TTS-EEEEETTEE-
T ss_pred             CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCc-c-EEEEECCCeEEEEEcCccc
Confidence            344557899999999998884 67788888743221  111    2455678898843 3 4566668889997433333


Q ss_pred             eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737          570 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS  649 (732)
Q Consensus       570 ~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t  649 (732)
                      ....+..+..+..+-.   |. ++....++.|.+||+.+++.+.++...  +|..+.|++++.+++..++..+.|++...
T Consensus       101 ~~k~i~~~~~~~~If~---G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~  174 (443)
T PF04053_consen  101 VVKSIKLPFSVEKIFG---GN-LLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL  174 (443)
T ss_dssp             TT-----SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred             cceEEcCCcccceEEc---Cc-EEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence            3334444333443333   44 445555569999999999999998743  48999999999999999988888887653


Q ss_pred             C--------CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737          650 G--------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS  721 (732)
Q Consensus       650 ~--------~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaS  721 (732)
                      .        .....+..+......|.+.+|..+  .++..+.. .|+.  +..|+...+..-+.++.=+.+.+..+.|+.
T Consensus       175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~  249 (443)
T PF04053_consen  175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL  249 (443)
T ss_dssp             HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred             hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence            2        000123333333677889999887  45555544 6666  566776666555677888888888888999


Q ss_pred             EECCCeEEEe
Q 004737          722 ASHDKCVKIW  731 (732)
Q Consensus       722 gs~DG~I~IW  731 (732)
                      ...|+.|..+
T Consensus       250 ~Dr~~~v~~~  259 (443)
T PF04053_consen  250 IDRDGNVISY  259 (443)
T ss_dssp             E-TT--EEEE
T ss_pred             EECCCCEEEE
Confidence            9999888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.53  E-value=1.3e-06  Score=87.55  Aligned_cols=194  Identities=14%  Similarity=0.133  Sum_probs=113.8

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE------------EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~------------~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      |+.+.|+.+ ..|+++..++.+..+....+.+.            +.+..|.++-.+-+.+--++.++++..||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            556666543 35666666666655554433332            22223333322223333467799999999999999


Q ss_pred             cCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeee-EEeccCCeeEEEEeCCCCEE-
Q 004737          521 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI-  592 (732)
Q Consensus       521 l~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~-~~~~~~~i~~v~~sp~g~~l-  592 (732)
                      .+......+.+. .|.+ -.+.++...++ ++.++.     .-+..+.|+++..+.+. ..+....+.+++-+|....+ 
T Consensus       118 ~~~~~~~~~~i~~~~~~-~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v  195 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSG-SASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLV  195 (319)
T ss_pred             chHHHhhhhhccccccc-ccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEE
Confidence            875221111111 1221 12222222322 222222     12345566665433322 12223448888888876554 


Q ss_pred             EEEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCC
Q 004737          593 LAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~~-~i~~l~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t  649 (732)
                      ++|+.||.+.+||.+... +...++.|+.+|+.+.|+|. +..|++++ ||.+..||..+
T Consensus       196 ~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  196 CCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            566678999999999873 34456789999999999995 67788888 99999999765

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.51  E-value=2.8e-05  Score=88.62  Aligned_cols=179  Identities=11%  Similarity=0.044  Sum_probs=120.1

Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-------------------------
Q 004737          543 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-------------------------  597 (732)
Q Consensus       543 fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-------------------------  597 (732)
                      +.|||..+....-..+.+.+.|.++.+....+........+.++++++++++.+.                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            3455555544444557788889998888888877777778889999888887751                         


Q ss_pred             ---------------CCeEEEEECCC-----CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCC---
Q 004737          598 ---------------ENYISILDVET-----QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---  652 (732)
Q Consensus       598 ---------------dg~I~IwDl~t-----~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~---  652 (732)
                                     ++.|.++|.++     ...+..+. -......+.++|||+++++++  +.+|.|+|+.+.+.   
T Consensus       280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~  358 (635)
T PRK02888        280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD  358 (635)
T ss_pred             HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence                           23477777776     23444443 445678899999999999888  88999999987532   


Q ss_pred             ------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CeEE-EEccCCCCee-----EE
Q 004737          653 ------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDKLVS-----SL  710 (732)
Q Consensus       653 ------~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t----------~~~~-~~~~h~~~V~-----sl  710 (732)
                            ...+.+... +..-...+|.++|..+.+..-|..|..||+..          ...+ .+.-|..+-.     .=
T Consensus       359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~  437 (635)
T PRK02888        359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE  437 (635)
T ss_pred             ccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence                  112233332 33445678999998777788899999999876          2233 3333333221     12


Q ss_pred             EEeCCCCEEEEEE
Q 004737          711 AASTVNGMVASAS  723 (732)
Q Consensus       711 a~spdg~~LaSgs  723 (732)
                      .-.+||++|++..
T Consensus       438 t~~~dgk~l~~~n  450 (635)
T PRK02888        438 TKEADGKWLVSLN  450 (635)
T ss_pred             cCCCCCCEEEEcc
Confidence            2367788887764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.51  E-value=4.5e-05  Score=78.17  Aligned_cols=187  Identities=14%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCC------CCeEEEEeCCCeEEEE
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW  519 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspd------g~~Lasgs~Dg~I~IW  519 (732)
                      =.-++||||+.+||.+...|+|+|||+...+ +..+..       -...|..+.|.+.      ...|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            4569999999999999999999999987633 333321       2356777777552      2246677788888887


Q ss_pred             ecCCC---Cc-eeEE--ee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE
Q 004737          520 DTENP---DY-SLRT--FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       520 Dl~s~---~~-~~~~--l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l  592 (732)
                      -+..+   .+ ....  +. .+...|.++.|+|....+++.|.....-..+.          ....++++-.+-.+..++
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Pyy  194 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPYY  194 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCcE
Confidence            76421   11 1122  22 24668999999998655554444332100000          001222222222222111


Q ss_pred             E--EEEcCCe------EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737          593 L--AAAIENY------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       593 l--~~s~dg~------I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      .  +...|+.      ..+|.+-+.+...........|..|..+|||.+|++.. +|.|.+|++.+-
T Consensus       195 k~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  195 KQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             EEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            1  1111111      12233222222222223567899999999999999999 999999999875

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.49  E-value=0.00038  Score=78.08  Aligned_cols=243  Identities=14%  Similarity=0.098  Sum_probs=139.6

Q ss_pred             eEEEEEcCCCCEEEEE-ECC----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC-----------eE
Q 004737          453 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV  516 (732)
Q Consensus       453 V~~lafSpdg~~Lasg-s~D----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg-----------~I  516 (732)
                      +..+++||||++||.+ +..    ..|+|+|+++++.+...-... ....+.|.+|++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4468899999998865 333    469999999998765321111 123399999988877765443           37


Q ss_pred             EEEecCCCCce-eEEeecCCcc--eEEEEEcCCCCcEEEEEeCC---CcEEEEECCCC-----eeeeEEeccCCeeEEEE
Q 004737          517 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFKCQSGATQMRF  585 (732)
Q Consensus       517 ~IWDl~s~~~~-~~~l~~h~~~--V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~-----~~i~~~~~~~~i~~v~~  585 (732)
                      +.|++.++... ...+......  ...+..+++++.+++.....   ..|++.|+..+     ...........+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888876543 2344443333  56888899998888766544   35888888864     33333333333433332


Q ss_pred             eCCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCce
Q 004737          586 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE  654 (732)
Q Consensus       586 sp~g~~ll~~s~----dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~  654 (732)
                      .. +..+++.+.    .+.|...++....   ....+..+...+.-..+...+.+|+...  ++  .|++|++..+   .
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~  360 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K  360 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence            22 444444443    3578888888764   2334444555433333334455555544  55  7999999822   2


Q ss_pred             eEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEE
Q 004737          655 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL  700 (732)
Q Consensus       655 ~i~~~~~-~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~~~~~  700 (732)
                      ....+.. ..+.|..+...++...+...-..    ..|+.||+.+++...+
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence            3333332 33445666655666554443322    2899999999887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.47  E-value=0.00017  Score=75.90  Aligned_cols=225  Identities=13%  Similarity=0.110  Sum_probs=147.6

Q ss_pred             eEEEEEcC-CCCeEEEEeCCC-eEEEEecCCCCceeEEeecCCcce--EEEEEcCCCCcEEEEE----eCCCcEEEEECC
Q 004737          495 ITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSC----DNNSEIRYWSIN  566 (732)
Q Consensus       495 V~~l~fsp-dg~~Lasgs~Dg-~I~IWDl~s~~~~~~~l~~h~~~V--~sl~fspdg~~llaSg----s~Dg~I~iWDl~  566 (732)
                      ...++.+| ....++.+-.-| ...+||..++.. ...+....+.-  =.-+|++||..++++-    ...|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            44677888 455666666655 467889888764 32332222111  1357999987766542    235789999998


Q ss_pred             -CCeeeeEEecc-CCeeEEEEeCCCCEEEEEEc------------------CCeEEEEECCCCeEEEE--E--cCCCCCE
Q 004737          567 -NGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLK--L--QGHKNQV  622 (732)
Q Consensus       567 -t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~------------------dg~I~IwDl~t~~~i~~--l--~~h~~~V  622 (732)
                       ..+.+..+... -+...+.+.|++..|+++..                  +-.+.+.|..+++.+..  +  .-|...|
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence             55666666543 34678899999988777642                  22477788888887766  4  2377789


Q ss_pred             EEEEEeCCCCEEEEEe-CC-------eEEEEECCCCCCceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCC-eEEE
Q 004737          623 HSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLEL  689 (732)
Q Consensus       623 ~sla~spdg~~Lasgs-Dg-------~I~IWDl~t~~~~~~i~----~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~I  689 (732)
                      ..+++.++|..++..- .|       .|-+++....  ...+.    ........+-++++++++.++++.+--+ .+.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~  243 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV  243 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence            9999999998887765 33       3555554331  11111    1123357799999999999887776655 8999


Q ss_pred             EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737          690 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  724 (732)
Q Consensus       690 wDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~  724 (732)
                      ||..+++.+....- ..+..++..+++ +++|.+.
T Consensus       244 ~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  244 WDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence            99999998844322 235666665555 5665544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=0.00027  Score=78.50  Aligned_cols=251  Identities=12%  Similarity=0.132  Sum_probs=175.0

Q ss_pred             EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEE
Q 004737          474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  552 (732)
Q Consensus       474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~lla  552 (732)
                      +.+++..+......+..+. ....+.+.+++..++... ....+.+.+... .........-...-..+++++.+..+++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence            6666666666655554443 566778888885554443 223455555542 2111111111134567888999888888


Q ss_pred             EEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737          553 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       553 Sgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~---dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp  629 (732)
                      ....+..|.+.|..+.++............++++++++.++++..   ++.+.+.|..+.+.+.....-..+ ..++++|
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p  169 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP  169 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence            888889999999988888888776667889999999988888877   689999999999888775544444 8999999


Q ss_pred             CCCEEEEEe--CCeEEEEECCCCCCceeEE-E---eecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEE
Q 004737          630 SGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTL  700 (732)
Q Consensus       630 dg~~Lasgs--Dg~I~IWDl~t~~~~~~i~-~---~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~  700 (732)
                      +|..++.+.  ++.|.++|.....   ... .   .......-..+.+++++.++++.....   .+...|..++.....
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNS---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcc---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            999877777  8899999976642   221 1   112234456789999999777776654   899999999888744


Q ss_pred             c-cCCC-CeeEEEEeCCCCEEEEEECC-CeEEE
Q 004737          701 S-AHDK-LVSSLAASTVNGMVASASHD-KCVKI  730 (732)
Q Consensus       701 ~-~h~~-~V~sla~spdg~~LaSgs~D-G~I~I  730 (732)
                      . .-.. ....+.++|++++++..... +.|.+
T Consensus       247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             ccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence            2 1111 56778999999988877443 44544

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.44  E-value=3.9e-06  Score=96.41  Aligned_cols=181  Identities=18%  Similarity=0.275  Sum_probs=141.4

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEE
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  540 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~s  540 (732)
                      ++..++.|+.-..+..+|+.+.+..+...-....|+-++.  +++++.+|...|+|.+-|..+.+ .+.++..|.+.|..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence            3456777887888999999998887776555545666665  67899999999999999999866 68999999999998


Q ss_pred             EEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCC--
Q 004737          541 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--  608 (732)
Q Consensus       541 l~fspdg~~llaSgs~---------Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t--  608 (732)
                      ++..   .++|++|+.         |..|+|||++..+.+..+..+....-+.|.|.- ..+++++..|...+.|..+  
T Consensus       223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls  299 (1118)
T KOG1275|consen  223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS  299 (1118)
T ss_pred             eecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence            8887   356667764         456899999998888777766667778888853 4577888899999999433  


Q ss_pred             -C-eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737          609 -Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI  647 (732)
Q Consensus       609 -~-~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl  647 (732)
                       . ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus       300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence             2 22233333445699999999999999999 999999983

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.41  E-value=9.4e-06  Score=93.39  Aligned_cols=175  Identities=14%  Similarity=0.216  Sum_probs=129.2

Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe
Q 004737          550 LLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN  628 (732)
Q Consensus       550 llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s  628 (732)
                      .++-|+.-..+..+|+++.+..+...... ++.-++.  +++.+++|...|+|.+-|.++.+.+.++..|.+.|..+.. 
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv-  225 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV-  225 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence            34466666778889999888777766544 4544444  4578889999999999999999999999999999976654 


Q ss_pred             CCCCEEEEEe----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEC---CC
Q 004737          629 TSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TE  694 (732)
Q Consensus       629 pdg~~Lasgs----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl---~t  694 (732)
                       .|+.|++|+          |.-|+|||++....   +..+..+.++ .-+.|+|.. ..+++++..|...+.|.   .+
T Consensus       226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             -cCCeEEEeecccccccccccchhhhhhhhhhhc---cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence             677888776          33689999998733   3222222222 445778865 56888899999999883   33


Q ss_pred             CeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          695 NKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       695 ~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ...-  .+......+.++++++++..++.+..+|.|.+|-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            2211  2334455699999999999999999999999993

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.38  E-value=0.00017  Score=82.67  Aligned_cols=256  Identities=11%  Similarity=0.088  Sum_probs=149.8

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCC------ceE--EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------~V~--~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      +..++.++.++.|..+|..+++.+-.+.....      .+.  .+.+. ++..++.++.++.|..+|.++++...+ +..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK-FGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee-ecC
Confidence            34666777789999999999988866643322      010  11111 226788888999999999999875333 221


Q ss_pred             CCcc-----e-EEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCeeeeEEeccCC-------------------
Q 004737          534 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG-------------------  579 (732)
Q Consensus       534 h~~~-----V-~sl~fspdg~~llaSgs---------~Dg~I~iWDl~t~~~i~~~~~~~~-------------------  579 (732)
                      ....     + ....+..  .. ++.++         .++.|..+|..+++.+..+.....                   
T Consensus       139 ~~~~~~~~~i~ssP~v~~--~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVK--KL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCCcCcceEecCCCEEEC--CE-EEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            1110     1 1122221  23 33332         367899999999998887764211                   


Q ss_pred             --e-eEEEEeCCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEcCCCCCEE------EEEEe----
Q 004737          580 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQVH------SVCWN----  628 (732)
Q Consensus       580 --i-~~v~~sp~g~~ll~~s~dg------------------~I~IwDl~t~~~i~~l~~h~~~V~------sla~s----  628 (732)
                        + ....+.+.++.+++++.++                  .|.-+|.++++.+..+..-...+.      ...+.    
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence              0 1245555667888887665                  799999999998887652111110      01111    


Q ss_pred             CCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 004737          629 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET  686 (732)
Q Consensus       629 pdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg------------------s~dg~  686 (732)
                      -++.   +++.++ +|.+..+|.++++   .+-.....   ...+..+|  ..++++                  ..++.
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~  367 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG  367 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence            1333   456666 8999999999984   33332211   11123333  223332                  23568


Q ss_pred             EEEEECCCCeEE-EEccC--C------CCe--eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          687 LELWNMTENKTL-TLSAH--D------KLV--SSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       687 I~IwDl~t~~~~-~~~~h--~------~~V--~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |.-+|+.+++.+ .....  .      .+.  ..+.  -.+.+|+.++.||.|+.+|
T Consensus       368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald  422 (488)
T cd00216         368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFD  422 (488)
T ss_pred             EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEE
Confidence            889999999887 22211  1      111  1222  2457788888999988764

The alignment model contains an 8-bladed beta-propeller.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.36  E-value=8.8e-07  Score=91.93  Aligned_cols=160  Identities=13%  Similarity=0.184  Sum_probs=120.5

Q ss_pred             EEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEE
Q 004737          552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC  626 (732)
Q Consensus       552 aSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~V~sla  626 (732)
                      ++.+.+-.|-+-|++++... .|...+.|.++.|...++.++.|+.+|.|..+|++..     .+...+. |...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence            45556777889999877543 3335577888889888899999999999999999865     3444554 899999998


Q ss_pred             EeC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc
Q 004737          627 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA  702 (732)
Q Consensus       627 ~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~s--l~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~  702 (732)
                      .-. ++.+|++.+ +|+|++||++.-+...-+..+.+|-+.-.-  +.+.+....+++++.|-..+||.++.+.++....
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            766 677887777 999999999987444447788877654333  3456667789999999999999999999884332


Q ss_pred             -----CCCCeeEEEEe
Q 004737          703 -----HDKLVSSLAAS  713 (732)
Q Consensus       703 -----h~~~V~sla~s  713 (732)
                           .+..+.+++|.
T Consensus       386 f~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  386 FPYSASEVDIPSVAFD  401 (425)
T ss_pred             CCCccccccccceehh
Confidence                 23355666664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=1.3e-05  Score=91.55  Aligned_cols=183  Identities=16%  Similarity=0.201  Sum_probs=128.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      .+.|+|++++  +++|+.|+.+|.|++++.... . .+...|...      ..+|.++++|+.||+|.|-.+.+.+. ..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence            4568888886  679999999999999987543 2 333345443      56899999999999999999887663 23


Q ss_pred             EeecCCcceEEEEEcCC----CCcEEEEEeCCCcEEEEECC---CCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          530 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspd----g~~llaSgs~Dg~I~iWDl~---t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .+. ...++.+|+++|+    ....+++|+..| +.++.-+   ....+......+.|.++.|..+   +++-..|-.|+
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~  182 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK  182 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence            333 4578999999998    234556888777 7776532   2222223335578999999743   66666667799


Q ss_pred             EEECCCCeEEEEEcCCCCCE------EEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737          603 ILDVETQVCRLKLQGHKNQV------HSVCWNTSGEYLASVSDELVRVWSIGS  649 (732)
Q Consensus       603 IwDl~t~~~i~~l~~h~~~V------~sla~spdg~~LasgsDg~I~IWDl~t  649 (732)
                      |||+.+...+..+......+      ..+.|.++.+ |+.|-..+|+|..++.
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK  234 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence            99999988877766433322      3577876554 5556667788888873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=1.7e-06  Score=89.92  Aligned_cols=160  Identities=14%  Similarity=0.190  Sum_probs=118.8

Q ss_pred             EEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC----CceeE
Q 004737          455 SCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR  529 (732)
Q Consensus       455 ~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~----~~~~~  529 (732)
                      .|+|+-+-. +-++.+.+-.|-+-|++++-.. .|. ..+.|.++.|.-.+++++.|+..|.|.++|++..    ..+..
T Consensus       216 ~CawSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~  293 (425)
T KOG2695|consen  216 SCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ  293 (425)
T ss_pred             hhhhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence            346664211 2255566778888898886433 232 5567999999988899999999999999999875    33333


Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEEeccCC---eeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~---i~~~~~~~~---i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      .+ .|...|+++.........|++.+.+|.|++||++.-++   +..+..|..   ..-+.+.+..+.+++++.|...+|
T Consensus       294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence            34 48899999987764456666888899999999998777   666664322   223455677889999999999999


Q ss_pred             EECCCCeEEEEEcC
Q 004737          604 LDVETQVCRLKLQG  617 (732)
Q Consensus       604 wDl~t~~~i~~l~~  617 (732)
                      |.++.+..+.++..
T Consensus       373 Wsl~~ghLl~tipf  386 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPF  386 (425)
T ss_pred             EecccCceeeccCC
Confidence            99999988887764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.32  E-value=6.6e-05  Score=83.99  Aligned_cols=204  Identities=15%  Similarity=0.116  Sum_probs=131.5

Q ss_pred             EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---C-CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc
Q 004737          474 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  549 (732)
Q Consensus       474 I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---D-g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~  549 (732)
                      +.+-|.+ +.....+..-...+..-+|+|++..++..+.   . ..+.++|+.++..... . ...+.-....|+|||+.
T Consensus       175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~-~~~g~~~~P~fspDG~~  251 (425)
T COG0823         175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-L-NFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-e-ccCCccCCccCCCCCCE
Confidence            3333433 4555555555667888899999987665532   2 3689999998764322 1 13344566789999999


Q ss_pred             EEEEEeCCCc--EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEE
Q 004737          550 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHS  624 (732)
Q Consensus       550 llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~s  624 (732)
                      ++++...||.  |+++|+..+...+.....+.-..-.|+|+|++++.++.. |  .|.++|.+....... ......-..
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-T~~~~~~~~  330 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-TFSGGGNSN  330 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe-eccCCCCcC
Confidence            9999888875  666688776644423333334567899999999888764 3  588888887755332 222222237


Q ss_pred             EEEeCCCCEEEEEe--CCe--EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004737          625 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE  685 (732)
Q Consensus       625 la~spdg~~Lasgs--Dg~--I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg  685 (732)
                      -.|+|||++|+..+  +|.  |.+.|+.++..   +..+. .......-.|.+++..+...+..+
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence            78999999999888  564  77777766532   22221 222334457778887766655443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.32  E-value=0.00071  Score=75.79  Aligned_cols=90  Identities=11%  Similarity=0.107  Sum_probs=71.0

Q ss_pred             eEEEEECCCCCCceeEE-EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEE
Q 004737          641 LVRVWSIGSGSKGECIH-ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV  719 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~i~-~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~L  719 (732)
                      .-.+|++...+. +++. ..-.....+.+++++|+...++.|+.||.|.+||...+... ...+.-.++.++|+|+|.++
T Consensus       237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEE
Confidence            345677655432 2322 22346788999999999999999999999999999777544 33555678999999999999


Q ss_pred             EEEECCCeEEEeC
Q 004737          720 ASASHDKCVKIWK  732 (732)
Q Consensus       720 aSgs~DG~I~IWD  732 (732)
                      ++|+..|.|.+||
T Consensus       315 ~V~s~qGelQ~FD  327 (545)
T PF11768_consen  315 VVGSEQGELQCFD  327 (545)
T ss_pred             EEEcCCceEEEEE
Confidence            9999999999998

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00012  Score=84.47  Aligned_cols=206  Identities=15%  Similarity=0.239  Sum_probs=138.7

Q ss_pred             EEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 004737          499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG-----  568 (732)
Q Consensus       499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~-----  568 (732)
                      +|++.+..+|.|+.+|.|.+++-.  -..++.+..+...+...-|.-++..+|++.+.|+     .|+|||++.-     
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            467788899999999988887654  2334667777766444444445555666665544     5999998642     


Q ss_pred             -eee---eEEe-----ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC----CCeEEEEEcCCCCCEEEEEEeCCCCE-E
Q 004737          569 -SCA---GVFK-----CQSGATQMRFQPRLGRILAAAIENYISILDVE----TQVCRLKLQGHKNQVHSVCWNTSGEY-L  634 (732)
Q Consensus       569 -~~i---~~~~-----~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~----t~~~i~~l~~h~~~V~sla~spdg~~-L  634 (732)
                       .|+   +.+.     ...++.+++++.+-..+++|-.+|.|..+.-+    .+....-.....++|+.+++..++.. +
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence             344   2222     13457889999998999999999999998532    12212222234679999999999887 4


Q ss_pred             EEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeE
Q 004737          635 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSS  709 (732)
Q Consensus       635 asgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~s  709 (732)
                      +++.-..|.+|.+....  .....+..++..+.|..|++....+++++ ...|++|+......- .+. +|...+..
T Consensus       188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~  261 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV  261 (933)
T ss_pred             EEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence            44557789999998432  34555778888999999988776454444 347999998765443 555 66554433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.30  E-value=2.1e-06  Score=61.97  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=35.8

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  478 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd  478 (732)
                      ..+.++.+|.+.|++|+|+|++.+|++++.|+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.30  E-value=2.1e-06  Score=62.02  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=36.9

Q ss_pred             CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ++++.++.+|...|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            367889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=2e-05  Score=89.89  Aligned_cols=182  Identities=13%  Similarity=0.210  Sum_probs=131.4

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  571 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i  571 (732)
                      .+.++|++++  ++.|+.|+.+|.|++++....-   .+...|...      ..+| .++++|+.||.|.|..+-+.+..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCccc
Confidence            3557777775  5789999999999999987421   344445443      3444 56779999999999999999988


Q ss_pred             eEEeccCCeeEEEEeCC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEE
Q 004737          572 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV  644 (732)
Q Consensus       572 ~~~~~~~~i~~v~~sp~-----g~~ll~~s~dg~I~IwDl~t--~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~I  644 (732)
                      ..+....++.+++++|+     .+.+++|+..| +.++.-+-  .+.-..+....++|.+++|.  |.+|+-++|--|+|
T Consensus       107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v  183 (846)
T KOG2066|consen  107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV  183 (846)
T ss_pred             eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence            88888899999999997     56788888888 77776442  12222455678899999995  78899999777999


Q ss_pred             EECCCCCCceeEEEeecCCCc------eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          645 WSIGSGSKGECIHELSCTGNK------FHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       645 WDl~t~~~~~~i~~~~~~~~~------I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      ||+.+.   ..+..+......      -..+.|.++.+  ++.|...+|+|..++
T Consensus       184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK  233 (846)
T ss_pred             Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence            999886   333333322222      23466776664  444555578888777

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.29  E-value=0.0016  Score=70.83  Aligned_cols=271  Identities=14%  Similarity=0.096  Sum_probs=139.0

Q ss_pred             EEEEcCCCCEEEEEEC-CC--cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737          455 SCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~-Dg--~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      .=+|.+||+.|+.++. ||  .+.+.|+.+++....-.+.........++++.+.++....+..|+-.|+++.+. ...+
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy  118 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVY  118 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEE
Confidence            3477889977665554 54  566678888877655543323333566788888887776777899999998653 3455


Q ss_pred             ecCCcceEEEEEcC-CCCcEEEEEe----------------------CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC
Q 004737          532 TGHSTTVMSLDFHP-SKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR  588 (732)
Q Consensus       532 ~~h~~~V~sl~fsp-dg~~llaSgs----------------------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~  588 (732)
                      ......+-...|.. .+...++...                      ....|...|+.+|+....+....-+..+.|+|.
T Consensus       119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            54555554455542 2233332221                      113466678888888777776666888999998


Q ss_pred             CCEEEEEEcCC-----eEEEEECCC-CeEEEEEcCCC--CCEEEEEEeCCCCEEEEEe---CC---eEEEEECCCCCCce
Q 004737          589 LGRILAAAIEN-----YISILDVET-QVCRLKLQGHK--NQVHSVCWNTSGEYLASVS---DE---LVRVWSIGSGSKGE  654 (732)
Q Consensus       589 g~~ll~~s~dg-----~I~IwDl~t-~~~i~~l~~h~--~~V~sla~spdg~~Lasgs---Dg---~I~IWDl~t~~~~~  654 (732)
                      ...+++-+.+|     .-+||-+++ +.....+..+.  ..+..=-|.+||..|..-+   .+   .|.-+|+.++.. .
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~  277 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R  277 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence            88777776654     124554433 23333333332  2344557899998776533   22   577778877643 2


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCeEEEEccCCC-----------Ce
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK-----------LV  707 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg----------------~I~IwDl~t~~~~~~~~h~~-----------~V  707 (732)
                      .+...    .....+-.++|+.+++-=+.|.                -|++++++.+....+..|..           .=
T Consensus       278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h  353 (386)
T PF14583_consen  278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH  353 (386)
T ss_dssp             EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred             EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence            22222    1344556678888544333331                56778888877654444421           12


Q ss_pred             eEEEEeCCCCEEE-EEECCCeEEEe
Q 004737          708 SSLAASTVNGMVA-SASHDKCVKIW  731 (732)
Q Consensus       708 ~sla~spdg~~La-Sgs~DG~I~IW  731 (732)
                      -...|+||+++|+ ++...|...||
T Consensus       354 Php~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  354 PHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             CCCccCCCCCEEEEECCCCCCccEE
Confidence            4578999999665 45567766665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.29  E-value=0.00011  Score=83.05  Aligned_cols=272  Identities=12%  Similarity=0.124  Sum_probs=152.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  527 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~  527 (732)
                      |...|.--+++..++|++.|+.-|.|++|+-..++....- .+..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            3444555667778899999999999999997776554332 234455666778888888999999999999987763322


Q ss_pred             eEE-----eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-----eeeeEEeccCCeeEEEEeCCCCEEEEEEc
Q 004737          528 LRT-----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       528 ~~~-----l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-----~~i~~~~~~~~i~~v~~sp~g~~ll~~s~  597 (732)
                      -..     -..|...|++++|++++..++ +|+..|.|.+-.+...     .....+...+.|..+.+..  .++++++.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl  188 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL  188 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence            111     123778899999999976555 9999999999888762     1222333445666666553  44554444


Q ss_pred             CCeEEEEECCCCeEEEEEcC-CCCC-EEEEEEeCC----CCEEEEEeCCeEEEEECCCCCCceeEEEee-----------
Q 004737          598 ENYISILDVETQVCRLKLQG-HKNQ-VHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELS-----------  660 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~~l~~-h~~~-V~sla~spd----g~~LasgsDg~I~IWDl~t~~~~~~i~~~~-----------  660 (732)
                      -..| +++++.++....-+. ..+. -...||-|.    ..-.+.|+.--.|+|..+-..  ..+.+..           
T Consensus       189 ~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p  265 (726)
T KOG3621|consen  189 TRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAP  265 (726)
T ss_pred             hhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCC
Confidence            3333 344443221111011 1111 234455443    233333443335667654221  1111110           


Q ss_pred             -----c-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE
Q 004737          661 -----C-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       661 -----~-------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                           .             +.-....+.+-.++ .+++-+.-| |||+|..+...+.+......|..++.+  ++-|+.-
T Consensus       266 ~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL  341 (726)
T KOG3621|consen  266 EIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVL  341 (726)
T ss_pred             cccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEE
Confidence                 0             00011111121222 344444444 889998888777665455566666654  4445555


Q ss_pred             ECCCeEEE
Q 004737          723 SHDKCVKI  730 (732)
Q Consensus       723 s~DG~I~I  730 (732)
                      ..|+.+++
T Consensus       342 ~~d~~l~~  349 (726)
T KOG3621|consen  342 NLDRGLKV  349 (726)
T ss_pred             ecCCceeE
Confidence            55664443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.27  E-value=0.00016  Score=80.12  Aligned_cols=260  Identities=13%  Similarity=0.079  Sum_probs=139.8

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC--------
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------  523 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s--------  523 (732)
                      .|+++.|+++..-|++|...|.|.||.....+...  ......-....|.+-      ...++.-.+-|+..        
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            48999999999999999999999999875432221  000011111122110      00111122233321        


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC---------CeeEEEEeC-----CC
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---------GATQMRFQP-----RL  589 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~---------~i~~v~~sp-----~g  589 (732)
                      +-.+...+....++|++++.+.-|  +++.|+.+|.+.|.|++....+..-....         .++++.|..     |+
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence            112344455567899999998654  88899999999999999888877644322         367777762     22


Q ss_pred             ---CEEEEEEcCCeEEEEECC--C-CeE----EEEEcCCCCCEEEEE-EeCC---------------------CCEEEEE
Q 004737          590 ---GRILAAAIENYISILDVE--T-QVC----RLKLQGHKNQVHSVC-WNTS---------------------GEYLASV  637 (732)
Q Consensus       590 ---~~ll~~s~dg~I~IwDl~--t-~~~----i~~l~~h~~~V~sla-~spd---------------------g~~Lasg  637 (732)
                         -.+++|+..|.+.+|.+.  . +..    ......+.++|..|+ |+.+                     ..+++++
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               358888999999999764  1 211    112224667776665 3221                     1267777


Q ss_pred             eCCeEEEEECCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc----CCCCe
Q 004737          638 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV  707 (732)
Q Consensus       638 sDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f-----spdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~----h~~~V  707 (732)
                      ++..++|+...+.   +..+...........+++     ...+..|++...+|.|++|.+..-+.+ ...-    +...+
T Consensus       233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~  309 (395)
T PF08596_consen  233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL  309 (395)
T ss_dssp             -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred             cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence            7999999998876   344333322223334445     235677888899999999999998877 2222    12245


Q ss_pred             eEEEEeCCCCEEEEEEC
Q 004737          708 SSLAASTVNGMVASASH  724 (732)
Q Consensus       708 ~sla~spdg~~LaSgs~  724 (732)
                      ...+++++|..++-.+.
T Consensus       310 ~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  310 SSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             TT-EE-TTS-EEEE-SS
T ss_pred             cccEECCCCCEEEEeCc
Confidence            56777888887766554

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.25  E-value=0.00095  Score=71.24  Aligned_cols=256  Identities=9%  Similarity=0.101  Sum_probs=157.1

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC----------CCeEEEEecCCCCceeEEeecC--C----
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S----  535 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWDl~s~~~~~~~l~~h--~----  535 (732)
                      +.|.|+|.++++.+-.+...  ..-.+..+||++.+++++.          .-.|.+||..+-..........  .    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47999999999988776532  2334678999999887642          3479999999864322221111  1    


Q ss_pred             cceEEEEEcCCCCcEEEE-EeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 004737          536 TTVMSLDFHPSKEDLLCS-CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL  613 (732)
Q Consensus       536 ~~V~sl~fspdg~~llaS-gs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~~~i~  613 (732)
                      .....+.++.+++.+++. .+-.-.|.|.|+..++.+..+...+...-.-+.+  ..|.+.|.||.+..+.+. .++...
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeE
Confidence            122345677777665543 2344568888999998888887655433333332  468899999999988887 444432


Q ss_pred             E----EcCCCCCEE-EEEEeCCC-CEEEEEeCCeEEEEECCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 004737          614 K----LQGHKNQVH-SVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS  677 (732)
Q Consensus       614 ~----l~~h~~~V~-sla~spdg-~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~----------~~~I~sl~fspdg~~  677 (732)
                      +    |.....++. .-++...+ .+++...+|.|+-.|+..... .....+...          .+...-+++++....
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            2    212222222 33444444 455544499999999877532 222222211          122344688877766


Q ss_pred             EEEEEcC--------C--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEeC
Q 004737          678 LLVIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  732 (732)
Q Consensus       678 L~sgs~d--------g--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWD  732 (732)
                      |++.-..        +  .|.+||+.+++.+....-...+.+|..+.+.+ +|++.+ .++.|.|||
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            6664321        1  68899999999984444445688999998876 666554 578999986

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=0.00037  Score=80.42  Aligned_cols=195  Identities=13%  Similarity=0.167  Sum_probs=136.1

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc-eEEEEEcCCCCeEEEEeCCC-----eEEEEecCCCC
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD  525 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-V~~l~fspdg~~Lasgs~Dg-----~I~IWDl~s~~  525 (732)
                      .|+|  |++.+..+|.|+.+|.|.+.+- ..+.++.+..+... |..+-...+..+|++.+.|+     .|+|||++.-.
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4554  4567889999999999998873 44555777777766 44444444446888877765     58999987431


Q ss_pred             -----cee---EEee----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE--CC-C--CeeeeEEeccCCeeEEEEeCC
Q 004737          526 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--IN-N--GSCAGVFKCQSGATQMRFQPR  588 (732)
Q Consensus       526 -----~~~---~~l~----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD--l~-t--~~~i~~~~~~~~i~~v~~sp~  588 (732)
                           .++   +.+.    ....++.+++++.+ -..++.|-.+|.|.++.  +. .  .+.........+|+.+.+..+
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d  182 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD  182 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence                 112   2221    13467888999887 56677888899999884  21 1  122233345678999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737          589 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  650 (732)
Q Consensus       589 g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~  650 (732)
                      +..++.+.....|.+|.+....+ ...+..|...+.|..|++...-++++++..|.+||....
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~  245 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR  245 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence            88866666678899999885442 444677888999999987666577777778999998754

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.23  E-value=0.00072  Score=77.57  Aligned_cols=228  Identities=14%  Similarity=0.100  Sum_probs=131.2

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCCc--eEEEEEcC--CCCeEEEEe---------CCCeEEEEecCCCCceeE
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~Dg~I~IWDl~s~~~~~~  529 (732)
                      ..++.++.++.|+.+|.++++.+-.+......  -..+.-+|  .+..++.++         .++.|..+|..+++...+
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            57778888999999999999998776543221  01111111  124455543         367899999998875433


Q ss_pred             EeecCCc-------------------ce-EEEEEcCCCCcEEEEEeCCC------------------cEEEEECCCCeee
Q 004737          530 TFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA  571 (732)
Q Consensus       530 ~l~~h~~-------------------~V-~sl~fspdg~~llaSgs~Dg------------------~I~iWDl~t~~~i  571 (732)
                      .......                   .| ....+.+.+. +++.+..++                  .|.-+|+++++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            2221110                   01 1233343333 444554444                  7999999999999


Q ss_pred             eEEeccCC-e------eEEEEe----CCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 004737          572 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       572 ~~~~~~~~-i------~~v~~s----p~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasg  637 (732)
                      ..+..... .      ....+.    -++.   .+++++.+|.++.+|.++++.+......   ...++.+| +.+++..
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~  345 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA  345 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence            87753211 1      111111    1232   4777888999999999999988765421   11123333 2221111


Q ss_pred             ------------------eCCeEEEEECCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          638 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       638 ------------------sDg~I~IWDl~t~~~~~~i~~~~~~~--------~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                                        .+|.|.-+|..+++   .+-......        .+.......-.+..|++++.++.|+.+|
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald  422 (488)
T cd00216         346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD  422 (488)
T ss_pred             ccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence                              14677777887773   332222110        1111111122456788999999999999


Q ss_pred             CCCCeEE
Q 004737          692 MTENKTL  698 (732)
Q Consensus       692 l~t~~~~  698 (732)
                      .++++.+
T Consensus       423 ~~tG~~l  429 (488)
T cd00216         423 ATTGKEL  429 (488)
T ss_pred             CCCCcee
Confidence            9999988

The alignment model contains an 8-bladed beta-propeller.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.19  E-value=7.3e-05  Score=83.63  Aligned_cols=188  Identities=12%  Similarity=0.203  Sum_probs=124.4

Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CC--eE
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI  601 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg--~I  601 (732)
                      ...+..-...+..-+|+|++..+.+..-..   ..++++|+.+++........+......|+|+|++++.+.. ||  .|
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            444554556788889999988776654333   3599999999988888877777888999999999887665 44  68


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      +++|+..+.... +....+.-..=.|+|||++|+..+  .|  .|.+++......    ..+......-..-.|+|||++
T Consensus       265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~  339 (425)
T COG0823         265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK  339 (425)
T ss_pred             EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence            888988876333 443333344678999999999888  44  577777766532    222222222237789999999


Q ss_pred             EEEEEcC-C--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEE
Q 004737          678 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  720 (732)
Q Consensus       678 L~sgs~d-g--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~La  720 (732)
                      |+..+.. +  .|.++|+.++.......+......-.|.++++.|+
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM  385 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence            9888854 3  47777777666333333333333344445444333

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.19  E-value=0.0014  Score=71.99  Aligned_cols=246  Identities=17%  Similarity=0.175  Sum_probs=141.3

Q ss_pred             eeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC-----------------
Q 004737          429 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-----------------  491 (732)
Q Consensus       429 ~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-----------------  491 (732)
                      .-++++.++.    +..+......+....|||||+++|... ++.|.+++..++.....-...                 
T Consensus        25 y~i~d~~~~~----~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   25 YYIYDIETGE----ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEETTTTE----EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             EEEEecCCCc----eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            3456666653    222333367789999999999999886 589999998877544322111                 


Q ss_pred             CCceEEEEEcCCCCeEEEEeCCC------------------------------------eEEEEecCCCCceeEE-e---
Q 004737          492 TQWITDVRFSPSLSRLATSSADR------------------------------------TVRVWDTENPDYSLRT-F---  531 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg------------------------------------~I~IWDl~s~~~~~~~-l---  531 (732)
                      -+.-..+-|+||+++||....|.                                    .+.|+|+.+++..... .   
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            11235678999999998764431                                    1334455444321111 1   


Q ss_pred             ecCCcceEEEEEcCCCCcEEEE-EeCC---CcEEEEECCCCeeeeEEeccCC-----eeEEEEe-CCCCEEEEEE-cCC-
Q 004737          532 TGHSTTVMSLDFHPSKEDLLCS-CDNN---SEIRYWSINNGSCAGVFKCQSG-----ATQMRFQ-PRLGRILAAA-IEN-  599 (732)
Q Consensus       532 ~~h~~~V~sl~fspdg~~llaS-gs~D---g~I~iWDl~t~~~i~~~~~~~~-----i~~v~~s-p~g~~ll~~s-~dg-  599 (732)
                      ..-...+..+.|.+++..+++. ...+   ..+.++|..++++...+.....     .....+. +++..++..+ .+| 
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence            1234457888999887634433 3333   2466778877766544432221     2355555 6666655444 456 


Q ss_pred             -eEEEEECCCCeEEEEEcCCCCCEEE-EEEeCCCCEEEEEe--CC----eEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737          600 -YISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVF  671 (732)
Q Consensus       600 -~I~IwDl~t~~~i~~l~~h~~~V~s-la~spdg~~Lasgs--Dg----~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f  671 (732)
                       .|++++...+... .+....-.|.. +.|+++++.|+..+  ++    .|+..++..+   ..+..+.+....-..+.|
T Consensus       260 ~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~  335 (353)
T PF00930_consen  260 RHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASF  335 (353)
T ss_dssp             EEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE
T ss_pred             cEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEE
Confidence             5777777777644 55545566755 67888877665444  22    5555666611   344455544444479999


Q ss_pred             eCCCCEEEEEEc
Q 004737          672 HPTFPSLLVIGC  683 (732)
Q Consensus       672 spdg~~L~sgs~  683 (732)
                      ||++++++....
T Consensus       336 Spdg~y~v~~~s  347 (353)
T PF00930_consen  336 SPDGKYYVDTYS  347 (353)
T ss_dssp             -TTSSEEEEEEE
T ss_pred             CCCCCEEEEEEc
Confidence            999998876554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.18  E-value=0.00033  Score=83.51  Aligned_cols=231  Identities=14%  Similarity=0.195  Sum_probs=135.2

Q ss_pred             CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      ..+.|.++.|.-+..-++.+..+|.|.+-|..+...  .....-...|.+++|+||...+. ..+...+|.+-+ .+..+
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT-~~f~~  142 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLEL--EIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMT-KDFEP  142 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccce--eeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEe-ccccc
Confidence            346899999999999999999999999998887553  33344467899999999975544 444455555433 22222


Q ss_pred             eeEEec------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-----C
Q 004737          571 AGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----D  639 (732)
Q Consensus       571 i~~~~~------~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-----D  639 (732)
                      +.....      .+....+-|-.....| - +..|.....+................-++|+|--||.|+++..     +
T Consensus       143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf-r-gs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  143 IAEKPLDADDERKSKFVNVGWGRKETQF-R-GSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG  220 (1265)
T ss_pred             hhccccccccccccccceecccccceee-e-cchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence            221111      1112222222211111 0 1111111111111110000001122335799999999999843     4


Q ss_pred             -CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCeE---E-EEccCCCCeeEEE
Q 004737          640 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENKT---L-TLSAHDKLVSSLA  711 (732)
Q Consensus       640 -g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~---dg~I~IwDl~t~~~---~-~~~~h~~~V~sla  711 (732)
                       ..|+|||-. +   ..-..-....+.-.+++|-|.|..+++...   ++.|.+|.-+.-+.   . .+......|..++
T Consensus       221 ~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~  296 (1265)
T KOG1920|consen  221 TRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA  296 (1265)
T ss_pred             ceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence             689999976 3   111122223344578899999998888754   44798987544322   1 2333344599999


Q ss_pred             EeCCCCEEEE---EECCCeEEEe
Q 004737          712 ASTVNGMVAS---ASHDKCVKIW  731 (732)
Q Consensus       712 ~spdg~~LaS---gs~DG~I~IW  731 (732)
                      |+.++.+|++   +.....|++|
T Consensus       297 Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  297 WNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             ecCCCCceeeeecccccceEEEE
Confidence            9999998887   4444559998

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=3.6e-05  Score=87.76  Aligned_cols=261  Identities=10%  Similarity=0.083  Sum_probs=149.0

Q ss_pred             EEEEEcCCCCEEEEEEC----CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          454 ESCHFSPDGKLLATGGH----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       454 ~~lafSpdg~~Lasgs~----Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      +-.+|+|...++|+++-    .|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+. ..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence            34688898888888763    47888884 4555433221 122356799999988899998999999999887553 44


Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---Ee--ccCC--eeEEEEeCCCC------EEEEEE
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FK--CQSG--ATQMRFQPRLG------RILAAA  596 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~---~~--~~~~--i~~v~~sp~g~------~ll~~s  596 (732)
                      ....|..+|..+.|+++|.. ++++..-|.|.+|.......+..   +.  ....  ..|...++++.      ..++++
T Consensus        96 v~~th~a~i~~l~wS~~G~~-l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg  174 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTV-LMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG  174 (1416)
T ss_pred             eccCCCCCceeEEecCCCCe-EEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence            55679999999999999855 45999999999998763222211   11  1222  34445555532      233444


Q ss_pred             cCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          597 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       597 ~dg~I~-IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      .+..+- .++.+......... |.+       .|+|..++.+. +|+|+..|-..    .+....+... . ..+.|.+.
T Consensus       175 De~alD~~fnwk~~~a~rs~~-ksg-------v~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS-~-vQmLf~~~  240 (1416)
T KOG3617|consen  175 DESALDEPFNWKESLAERSDE-KSG-------VPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDS-E-VQMLFMGY  240 (1416)
T ss_pred             chhhhcccccCccchhhcccc-ccC-------CCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccc-h-HHHHHhcc
Confidence            444333 33333211111111 111       25666666666 88888887443    2222221111 1 11222222


Q ss_pred             CCEEEEEEcCCeEEEEEC-CCCe---------------------------EE----EE-ccCCCCeeEEEEeCCCCEEEE
Q 004737          675 FPSLLVIGCYETLELWNM-TENK---------------------------TL----TL-SAHDKLVSSLAASTVNGMVAS  721 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl-~t~~---------------------------~~----~~-~~h~~~V~sla~spdg~~LaS  721 (732)
                      ...+++...+-.+.+|-+ .+|.                           .+    .+ ......++|++++..+..|+.
T Consensus       241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a  320 (1416)
T KOG3617|consen  241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA  320 (1416)
T ss_pred             cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence            222222222222222111 0110                           00    00 012456999999999999999


Q ss_pred             EECCCeEEEeC
Q 004737          722 ASHDKCVKIWK  732 (732)
Q Consensus       722 gs~DG~I~IWD  732 (732)
                      |...|.|.+|.
T Consensus       321 gt~~gnv~~w~  331 (1416)
T KOG3617|consen  321 GTKEGNVTIWL  331 (1416)
T ss_pred             cccCCcEEEee
Confidence            99999999994

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.00019  Score=82.07  Aligned_cols=215  Identities=11%  Similarity=0.051  Sum_probs=132.8

Q ss_pred             EcCCCCEEEE-EECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC----eEEEEecCCCCceeEEee
Q 004737          458 FSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       458 fSpdg~~Las-gs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg----~I~IWDl~s~~~~~~~l~  532 (732)
                      +++||+.+.. .-..+.+.+.|.++.+....+.-.. ....+.++++|+++++.+.+.    ++..-+..+... +..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence            3445554422 2234667778888877776665433 446778999999998887432    333333322111 01110


Q ss_pred             cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----CeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEEC
Q 004737          533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV  606 (732)
Q Consensus       533 ~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-----~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl  606 (732)
                      -  ..+  ..+.++|+..++   .++.|.++|..+     .+.+..+........+.++|||+++++++. ++.|.|+|+
T Consensus       278 i--~~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv  350 (635)
T PRK02888        278 I--ARI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV  350 (635)
T ss_pred             h--HHH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence            0  000  023446665554   267899999998     567777888888999999999999888776 789999999


Q ss_pred             CCCeE------------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC------CC-ceeEEEeecCCCce
Q 004737          607 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG------SK-GECIHELSCTGNKF  666 (732)
Q Consensus       607 ~t~~~------------i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~------~~-~~~i~~~~~~~~~I  666 (732)
                      .+.+.            +.+..--. .-...+|+++|..+.+.. |..|..||+...      +. ...+..+..|..+.
T Consensus       351 ~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg  429 (635)
T PRK02888        351 RKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG  429 (635)
T ss_pred             hhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence            87542            23333222 234578999998777777 999999998761      11 13444444444333


Q ss_pred             EEE-----EEeCCCCEEEEEE
Q 004737          667 HSC-----VFHPTFPSLLVIG  682 (732)
Q Consensus       667 ~sl-----~fspdg~~L~sgs  682 (732)
                      ...     .-.++|++|++..
T Consensus       430 h~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        430 HNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eeeecCCCcCCCCCCEEEEcc
Confidence            222     2367777777654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.00073  Score=74.99  Aligned_cols=220  Identities=13%  Similarity=0.110  Sum_probs=154.9

Q ss_pred             eEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCcee
Q 004737          453 VESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL  528 (732)
Q Consensus       453 V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~~~  528 (732)
                      -.+++++++++.+ ++...++.|.+.|..+.+......-.. ....++|+++++.++.+..   +++|.+.|..+.....
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            4467888888854 444556899999988877776664333 5678999999988777765   6888888888876544


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EEeccCCeeEEEEeCCCCEEEEEEcC---Ce
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY  600 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-----~~~~~~~i~~v~~sp~g~~ll~~s~d---g~  600 (732)
                      . ...-..+ ..+++.|++..++++-..++.|.+.|.......+     ..........+.+++++.++++....   +.
T Consensus       155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            4 3333334 8999999998888777789999999987666553     23334456789999999987776664   59


Q ss_pred             EEEEECCCCeEEEEEcCCCC-CEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737          601 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~-~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg  675 (732)
                      +.+.|..++........-.. ....+.++|+|.++.+..  .+.+.+.|..+......+.........+..+++.+..
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            99999999877665221112 566789999999998886  5789999988763322222222223345555655544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.13  E-value=0.00025  Score=79.66  Aligned_cols=221  Identities=11%  Similarity=0.139  Sum_probs=121.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE-ecCCCCc
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY  526 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW-Dl~s~~~  526 (732)
                      ...-....+.++|+|+++++++ ||...||.....+....     +.-...+|... ..+|+-...++|.|+ ++++.. 
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~-  101 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV-  101 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T-
T ss_pred             CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCcccc-
Confidence            3444578899999999999855 78888888555444332     33456789884 457777778899996 443322 


Q ss_pred             eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV  606 (732)
Q Consensus       527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl  606 (732)
                       .+.+.. ...+..|-.   |..++ ..+ ++.|.+||+.+++.++.+.... +..+.|++++.+++..+.+ .++|++.
T Consensus       102 -~k~i~~-~~~~~~If~---G~LL~-~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~  172 (443)
T PF04053_consen  102 -VKSIKL-PFSVEKIFG---GNLLG-VKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKY  172 (443)
T ss_dssp             -T------SS-EEEEE----SSSEE-EEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred             -ceEEcC-CcccceEEc---CcEEE-EEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence             122221 112333333   44444 444 4489999999999999998643 8999999998888887754 5666554


Q ss_pred             CCC-----------eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737          607 ETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       607 ~t~-----------~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg  675 (732)
                      +..           ..+..+......|.+.+|..+  .++-.....|+.  +..+    ....+.....+++-+.+.+..
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~  244 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSNHLKY--LVNG----ETGIIAHLDKPLYLLGYLPKE  244 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TTEEEE--EETT----EEEEEEE-SS--EEEEEETTT
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCCeEEE--EEcC----CcceEEEcCCceEEEEEEccC
Confidence            322           022222222568999999877  444444337777  3333    222333345678888888877


Q ss_pred             CEEEEEEcCCeEEEEECC
Q 004737          676 PSLLVIGCYETLELWNMT  693 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~  693 (732)
                      ..+++...++.|..+.+.
T Consensus       245 ~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  245 NRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             TEEEEE-TT--EEEEE--
T ss_pred             CEEEEEECCCCEEEEEEC
Confidence            888888888888887664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=2.4e-05  Score=89.10  Aligned_cols=260  Identities=12%  Similarity=0.077  Sum_probs=149.1

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEe
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF  531 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l  531 (732)
                      +++++|+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..++++..-|.|.+|..+--. .....+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            6679999998889999999999999998877777778899999999999999999999999999999887322 111122


Q ss_pred             ecCC--cce--EEEEEcCCCCcE-----EEEEeCCCcEE-EEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          532 TGHS--TTV--MSLDFHPSKEDL-----LCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       532 ~~h~--~~V--~sl~fspdg~~l-----laSgs~Dg~I~-iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      ..|.  ..+  +|...+++++.+     +++.+++..+- .++.+.....+....       .-.|+|..+++++.+|+|
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~GtV  214 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGTV  214 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCceE
Confidence            2232  223  344445553322     22333333332 333321111111111       114677888899999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECC----------------CCCC-c--------ee
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG----------------SGSK-G--------EC  655 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~----------------t~~~-~--------~~  655 (732)
                      +..|-.. ++....+.. +. ..+-|.+...-|++.- +-++.++-+.                .+.. .        -.
T Consensus       215 yyvdq~g-~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGv  291 (1416)
T KOG3617|consen  215 YYVDQNG-RQRTVHKLD-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGV  291 (1416)
T ss_pred             EEEcCCC-cEEEEEEcc-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccccc
Confidence            8887543 222222211 00 1111222211111111 1111111110                0000 0        00


Q ss_pred             EE---E-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EEEEc---cCCCCeeEEEEeCCCCEEE
Q 004737          656 IH---E-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTLS---AHDKLVSSLAASTVNGMVA  720 (732)
Q Consensus       656 i~---~-~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--------~~~~~---~h~~~V~sla~spdg~~La  720 (732)
                      +.   . -...+..+.|++++..+..++.+...|.+.+|--....        ...+.   ...+.|+.+.|.|--..++
T Consensus       292 Lr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a  371 (1416)
T KOG3617|consen  292 LRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA  371 (1416)
T ss_pred             ccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence            00   0 00134678999999999999999999999999543221        11222   3456899999988655444


Q ss_pred             EE
Q 004737          721 SA  722 (732)
Q Consensus       721 Sg  722 (732)
                      .-
T Consensus       372 vn  373 (1416)
T KOG3617|consen  372 VN  373 (1416)
T ss_pred             hh
Confidence            33

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.09  E-value=0.0012  Score=70.43  Aligned_cols=241  Identities=12%  Similarity=0.131  Sum_probs=153.8

Q ss_pred             ceeeccCCCCCCCCCceeeeeecCCCceeEEEEEecCCCC----CeEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCeEE
Q 004737          412 NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS----KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVK  485 (732)
Q Consensus       412 ~v~~~~s~~~~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~----~V~~lafSpdg~~Lasgs--~Dg~I~VWd~~t~~~~  485 (732)
                      ..+.|++......+.-++.+||..+-....++-.-.+|.-    ....+.++.||+++++.-  --..|.|.|+...+.+
T Consensus        52 ~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv  131 (342)
T PF06433_consen   52 VAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVV  131 (342)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEE
T ss_pred             EEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCcee
Confidence            3456777777788888999999999887777766555333    234578999999887754  3468999999999998


Q ss_pred             EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE----eecCCcce-EEEEEcCCCCcEEEEEeCCCcE
Q 004737          486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT----FTGHSTTV-MSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~----l~~h~~~V-~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      ..+... ++..-.-+  ....|.+-|.||.+.-..++........    |....+++ ..-.+...+..+++ -+.+|.|
T Consensus       132 ~ei~~P-GC~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v  207 (342)
T PF06433_consen  132 GEIDTP-GCWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNV  207 (342)
T ss_dssp             EEEEGT-SEEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE-EBTTSEE
T ss_pred             eeecCC-CEEEEEec--CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE-EecCCEE
Confidence            877532 22211112  2346888899999999999854433321    11112222 23334434344443 5568888


Q ss_pred             EEEECCCCeeee--EEec-----------cCCeeEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEEEcC
Q 004737          561 RYWSINNGSCAG--VFKC-----------QSGATQMRFQPRLGRILAAAIEN----------YISILDVETQVCRLKLQG  617 (732)
Q Consensus       561 ~iWDl~t~~~i~--~~~~-----------~~~i~~v~~sp~g~~ll~~s~dg----------~I~IwDl~t~~~i~~l~~  617 (732)
                      +-.|+.......  .+..           .++..-+++++..++|++.-..|          .|.+||+.+++.+.++..
T Consensus       208 ~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l  287 (342)
T PF06433_consen  208 YSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL  287 (342)
T ss_dssp             EEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE
T ss_pred             EEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC
Confidence            888887654322  2211           13345588888777777654322          589999999999998873


Q ss_pred             CCCCEEEEEEeCCCC-EEEEEe--CCeEEEEECCCCCCceeEEEee
Q 004737          618 HKNQVHSVCWNTSGE-YLASVS--DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       618 h~~~V~sla~spdg~-~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                       ..++.+|..+.+.+ +|++.+  ++.|.+||..++   +.++.+.
T Consensus       288 -~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~  329 (342)
T PF06433_consen  288 -EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIE  329 (342)
T ss_dssp             -EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred             -CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehh
Confidence             34677999998876 555544  789999999998   5555554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.04  E-value=0.0041  Score=63.11  Aligned_cols=143  Identities=11%  Similarity=0.011  Sum_probs=99.8

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  541 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl  541 (732)
                      ..+++.|+..+.+.--|..+|+.+..-. -...|.+-+.- -|++++.|++.|.+++.+..++.........  +.|.+-
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~   98 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVR   98 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccc
Confidence            3478888999999999999988775432 22233333322 3678999999999999999998653332221  223222


Q ss_pred             -EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-eEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          542 -DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQ  609 (732)
Q Consensus       542 -~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-~~v~~sp~g~~ll~~s~dg~I~IwDl~t~  609 (732)
                       ...++ ..+++.++.|++.+..|.++..++...+..+.+ .+-++.+-...++++...|.+.-...+..
T Consensus        99 a~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen   99 AQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             eEEcCC-CceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence             23344 468889999999999999999999998877664 34566775677777777777766665554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.01  E-value=0.0011  Score=71.60  Aligned_cols=210  Identities=13%  Similarity=0.096  Sum_probs=119.7

Q ss_pred             eEEEEecCCCCceeEEee-cCCcceEEEEE---cCC---CCcEEEEEeC----------CCcEEEEECCCC-----e--e
Q 004737          515 TVRVWDTENPDYSLRTFT-GHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-----S--C  570 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~-~h~~~V~sl~f---spd---g~~llaSgs~----------Dg~I~iWDl~t~-----~--~  570 (732)
                      .|++.|..+... +..+. .....+++++.   ..+   ...+++.|..          .|.|.++++...     +  .
T Consensus         3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            577777776553 22221 22334554443   222   1456655532          288999999884     2  3


Q ss_pred             eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe-EEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEC
Q 004737          571 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSI  647 (732)
Q Consensus       571 i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~-~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl  647 (732)
                      +......++|.+++-.  +++ ++++.++.|.+|++...+ ....-. .....+.++...  +.+|++|+ ...|.++.+
T Consensus        82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            3444567888888876  345 555556999999998776 333222 133466676665  55888888 565666644


Q ss_pred             CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--eEE--EEccCCCCeeEE---EEe
Q 004737          648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---AAS  713 (732)
Q Consensus       648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t-------~--~~~--~~~~h~~~V~sl---a~s  713 (732)
                      ......-...........++++.|-+++..++++..+|.|.++....       +  +..  ........|+++   ++.
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI  236 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence            43211011222233456688888986667899999999999987753       2  233  223345667777   444


Q ss_pred             CC--C------CEEEEEECCCeEEE
Q 004737          714 TV--N------GMVASASHDKCVKI  730 (732)
Q Consensus       714 pd--g------~~LaSgs~DG~I~I  730 (732)
                      |.  +      ..++.++.+|.|.+
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEE
Confidence            41  2      24788889998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.00  E-value=0.0063  Score=64.05  Aligned_cols=224  Identities=14%  Similarity=0.147  Sum_probs=131.0

Q ss_pred             CCCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE--------
Q 004737          460 PDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--------  530 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~--------  530 (732)
                      ..++.|+.|..+| |.+|+... .+.....  +...|..+...++-+.|++-+ |+.+.++++..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3577899999888 99999833 3333332  233399999999877776664 699999998754322210        


Q ss_pred             -----eecCCcceEEEE--EcCCCCcEEEEEeCCCcEEEEECCC----C-eeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737          531 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINN----G-SCAGVFKCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       531 -----l~~h~~~V~sl~--fspdg~~llaSgs~Dg~I~iWDl~t----~-~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                           .......+...+  -...+...++.+- ...|.+|....    . +..+.+.....+..++|..  +.++++. .
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~~-~  156 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVGT-S  156 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEEe-C
Confidence                 111223344444  1123344454444 55888887754    2 5667788888999999993  5555555 5


Q ss_pred             CeEEEEECCCCeEEEEEcCC------------CCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCce
Q 004737          599 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF  666 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h------------~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I  666 (732)
                      ....++|+.++.....+...            ..++..+.. +++++|+ +.|..-.+.|.... ... ...+.-.. ..
T Consensus       157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll-~~~~~g~fv~~~G~-~~r-~~~i~W~~-~p  231 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLL-CYDNIGVFVNKNGE-PSR-KSTIQWSS-AP  231 (275)
T ss_pred             CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEE-EecceEEEEcCCCC-cCc-ccEEEcCC-ch
Confidence            55888899876544333211            123333333 3455665 44544444454332 111 12222222 34


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737          667 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT  699 (732)
Q Consensus       667 ~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~  699 (732)
                      ..+++  ...+|++... +.|.||++.+++++.
T Consensus       232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ  261 (275)
T PF00780_consen  232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQ  261 (275)
T ss_pred             hEEEE--ECCEEEEECC-CEEEEEECcCCcEEE
Confidence            45555  3456666555 569999999998873

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.00  E-value=0.0027  Score=68.69  Aligned_cols=214  Identities=13%  Similarity=0.094  Sum_probs=126.3

Q ss_pred             CcEEEEEcCCCeEEEEecc-CCCceEEEE---EcCC----CCeEEEEeC----------CCeEEEEecCCC-----Ccee
Q 004737          472 KKAVLWCTESFTVKSTLEE-HTQWITDVR---FSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL  528 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~-h~~~V~~l~---fspd----g~~Lasgs~----------Dg~I~IWDl~s~-----~~~~  528 (732)
                      ..|+|.|..+.+.+..+.- ....+++++   |..+    ..+|++|+.          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3688899888887766532 223445443   4332    467777753          289999999884     2222


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE  607 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~  607 (732)
                      .......++|++++-.  +..++++.  ++.|.+|++...+ ....-..+..+........+++++++.....|.++..+
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence            2334457889999877  23455444  5789999998877 55555544444444444446799999988888877443


Q ss_pred             C-CeEEEEE--cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC-------C-CceeEEEeecCCCceEEE---EEe
Q 004737          608 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-------S-KGECIHELSCTGNKFHSC---VFH  672 (732)
Q Consensus       608 t-~~~i~~l--~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~-------~-~~~~i~~~~~~~~~I~sl---~fs  672 (732)
                      . ...+..+  ......+++++|-.+++.++++. +|.|.++.....       . ....+..+. .+..|+++   .+.
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI  236 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence            2 2222222  22455788999986667777777 899999987631       1 112222232 34556666   444


Q ss_pred             C--CCC------EEEEEEcCCeEEEE
Q 004737          673 P--TFP------SLLVIGCYETLELW  690 (732)
Q Consensus       673 p--dg~------~L~sgs~dg~I~Iw  690 (732)
                      |  .+.      .++.++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            5  222      48888889988743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.00  E-value=0.00084  Score=67.96  Aligned_cols=151  Identities=12%  Similarity=-0.018  Sum_probs=114.0

Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004737          541 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN  620 (732)
Q Consensus       541 l~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  620 (732)
                      +...++.+.+++.|+..+.+...|..+|+.+........+.+-+.- -+++++.|+..|.+++.+.+++.....+..-..
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            3445666788889999999999999999988777666666655544 457899999999999999999977776653322


Q ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      --......+++.+|..++ |+..+..|.++.   .++...+..++...+-++.|....|+++...|.|.--..+..
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            222344568899999999 999999999887   788888877777777788885555777777776555555444

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.97  E-value=3.9e-06  Score=93.33  Aligned_cols=198  Identities=12%  Similarity=0.114  Sum_probs=127.8

Q ss_pred             CCeEEEEEcCCC--CEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEEEEcC-CCCeEEEEe----CCCeEEEEec
Q 004737          451 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWDT  521 (732)
Q Consensus       451 ~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l~fsp-dg~~Lasgs----~Dg~I~IWDl  521 (732)
                      ..+.|+++.-+.  ..+++|..+|.|.+-.+.....  .....+|...+++++|++ |.++||.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            447788877644  4788999999999987764322  234467888999999998 566777763    3568999999


Q ss_pred             CCCCc-eeE--Eee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc
Q 004737          522 ENPDY-SLR--TFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       522 ~s~~~-~~~--~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~  597 (732)
                      .+.-. +..  .+. +-.....+++|..+ ..++.+|.....|.++|++........-....+..+.+.|-....++...
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence            87511 111  111 23345668889865 56666888888999999983221111111123555667774444667777


Q ss_pred             CCeEEEEEC-CCCe-EEEEEcCC----CCCEEEEEEeCCCC-EEEEEe--CCeEEEEECCC
Q 004737          598 ENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS  649 (732)
Q Consensus       598 dg~I~IwDl-~t~~-~i~~l~~h----~~~V~sla~spdg~-~Lasgs--Dg~I~IWDl~t  649 (732)
                      ||.|.+||. ++-+ ++..+...    ...+..++|+|... .+++..  .++|+.||+..
T Consensus       216 dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            999999994 3322 22222211    22489999999643 455555  56999999864

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.95  E-value=2.6e-06  Score=94.71  Aligned_cols=198  Identities=18%  Similarity=0.241  Sum_probs=136.1

Q ss_pred             CCceEEEEEcCCC--CeEEEEeCCCeEEEEecCCCCce-eEEeecCCcceEEEEEcCCCCcEEEEEe----CCCcEEEEE
Q 004737          492 TQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWS  564 (732)
Q Consensus       492 ~~~V~~l~fspdg--~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs----~Dg~I~iWD  564 (732)
                      ...+.|+++..+.  -++++|..+|.|-+-.++..... .....+|...+++++|++-+...||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3457777776643  47888999999999988765543 4566788899999999997777776663    356899999


Q ss_pred             CCCC--eeeeEEe----ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEeC-CCCEEEE
Q 004737          565 INNG--SCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLAS  636 (732)
Q Consensus       565 l~t~--~~i~~~~----~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~sp-dg~~Las  636 (732)
                      +.++  .+.....    ...+...++|..+.+.+++|.....+.++|++-... ...+  .+..+..+..+| .+.|+++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence            9876  2221111    224466888988888888888899999999984321 1111  344667788888 7889988


Q ss_pred             EeCCeEEEEE-CCCCCCceeEEEeecC----CCceEEEEEeCCCCE-EEEEEcC-CeEEEEECC
Q 004737          637 VSDELVRVWS-IGSGSKGECIHELSCT----GNKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT  693 (732)
Q Consensus       637 gsDg~I~IWD-l~t~~~~~~i~~~~~~----~~~I~sl~fspdg~~-L~sgs~d-g~I~IwDl~  693 (732)
                      ..||.|.+|| .+.-+  ..+..+...    ...+..++|.|...- +++...| ++|++||+.
T Consensus       214 ~~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  214 NSDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            8899999999 43322  122222112    234889999996543 4444444 389999874

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.95  E-value=0.0083  Score=69.41  Aligned_cols=187  Identities=10%  Similarity=0.024  Sum_probs=114.4

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceE---E-------EEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      +..|++++.++.|+-+|..+|+.+-.+.... ..+.   +       +++  .+..++.++.|+.|...|.++++..-+.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4477777778899999999999887664211 1111   1       122  2346777888999999999998854332


Q ss_pred             eec-CC--cceEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccCC----------------------
Q 004737          531 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG----------------------  579 (732)
Q Consensus       531 l~~-h~--~~V~s-l~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~~----------------------  579 (732)
                      -.. +.  ..+.+ ..+. + ..+++..+     .+|.|..+|.++|+.+..+.....                      
T Consensus       147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            211 11  01111 1111 2 33443322     268999999999998866542110                      


Q ss_pred             -----------eeEEEEeCCCCEEEEEEcC-----C-----------eEEEEECCCCeEEEEEcCCCCCE---------E
Q 004737          580 -----------ATQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQV---------H  623 (732)
Q Consensus       580 -----------i~~v~~sp~g~~ll~~s~d-----g-----------~I~IwDl~t~~~i~~l~~h~~~V---------~  623 (732)
                                 -..+.+.+..+.++.+..+     +           .|.-.|+++++.+..+......+         .
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                       0134777777777776632     2           68888999999887776422222         1


Q ss_pred             EEEEeCCCC---EEEEEe-CCeEEEEECCCCCC
Q 004737          624 SVCWNTSGE---YLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       624 sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      -+.+..+|+   .++.+. +|.+++.|-++++.
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence            222334665   566666 89999999998843

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.0038  Score=66.86  Aligned_cols=218  Identities=11%  Similarity=0.059  Sum_probs=133.7

Q ss_pred             EEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737          498 VRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-  575 (732)
Q Consensus       498 l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-  575 (732)
                      ..|.++...| ++--..+.|.-|+..++..  +.+. +.+.+.++.....+..++ ++  +..+++++.+++..+..+. 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence            4577776644 4445578899999886653  3333 233445555444433444 55  3347778876665533222 


Q ss_pred             c-----cCCeeEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737          576 C-----QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       576 ~-----~~~i~~v~~sp~g~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      .     ....+...+.|+|.+.+....           -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+. 
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence            1     123567888999777665444           134666665 4555555555556668999999999888877 


Q ss_pred             -CCeEEEEECCC--CCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEE-EEccCCCCeeEEE
Q 004737          639 -DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLA  711 (732)
Q Consensus       639 -Dg~I~IWDl~t--~~~~--~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~-~~~~h~~~V~sla  711 (732)
                       .+.|..|++..  +...  ..........+..-.++...+|.+.+++...+ .|.+|+.. ++++ .+.-....+++++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence             57888888763  2111  11222323445666788888898765555544 89999988 7666 5545557888999


Q ss_pred             Ee-CCCCEEEEEE
Q 004737          712 AS-TVNGMVASAS  723 (732)
Q Consensus       712 ~s-pdg~~LaSgs  723 (732)
                      |- ++.+.|+..+
T Consensus       262 FgG~~~~~L~iTs  274 (307)
T COG3386         262 FGGPDLNTLYITS  274 (307)
T ss_pred             EeCCCcCEEEEEe
Confidence            85 3445444443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.00017  Score=80.54  Aligned_cols=102  Identities=15%  Similarity=0.156  Sum_probs=75.2

Q ss_pred             eeeeecCCCceeEEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE
Q 004737          429 GRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL  507 (732)
Q Consensus       429 ~r~wd~~~g~~~~~v~~l-~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L  507 (732)
                      ..+++..... +..+... -.....|.|++++|+.+.|+.|+.||.|.+||...+.....  ...-.++.++|+|+|.+|
T Consensus       238 ~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  238 SCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             EEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEE
Confidence            3455555442 2222222 24677899999999999999999999999999877643322  344567899999999999


Q ss_pred             EEEeCCCeEEEEecCCCCceeEEeec
Q 004737          508 ATSSADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      ++|+..|.+.+||+.-.......+..
T Consensus       315 ~V~s~qGelQ~FD~ALspi~~qLlsE  340 (545)
T PF11768_consen  315 VVGSEQGELQCFDMALSPIKMQLLSE  340 (545)
T ss_pred             EEEcCCceEEEEEeecCccceeeccc
Confidence            99999999999998755443444433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.90  E-value=0.005  Score=64.81  Aligned_cols=215  Identities=13%  Similarity=0.124  Sum_probs=124.4

Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----------
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----------  572 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~----------  572 (732)
                      .++.|+.|+.+| +.++++.......+...  ...|..+...++-+.+++.+  |+.++++++..-....          
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccc
Confidence            577899999998 89999943332223222  33499999998866666554  5999999987544333          


Q ss_pred             -----EEeccCCeeEEE--EeCCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Q 004737          573 -----VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSDE  640 (732)
Q Consensus       573 -----~~~~~~~i~~v~--~sp~g~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~V~sla~spdg~~LasgsDg  640 (732)
                           .+....++..++  -...+...+++.....|.+|.....     +....+. -...+.+++|.  +..|+.+..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence                 122223344444  2244556667777779998887653     3444444 45788999998  6678888777


Q ss_pred             eEEEEECCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeE
Q 004737          641 LVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSS  709 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~i~~~~~~----------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~s  709 (732)
                      ...+.|+.++.. ..+......          ..++..+. -+++.+|++-  +..-.+.|....... ....-...+.+
T Consensus       158 ~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~~  233 (275)
T PF00780_consen  158 GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQS  233 (275)
T ss_pred             ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchhE
Confidence            799999997643 222211111          12222223 3345555432  333333344332211 11122345566


Q ss_pred             EEEeCCCCEEEEEECCCeEEEeC
Q 004737          710 LAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       710 la~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++.  ..||+..+.+ .|.||+
T Consensus       234 ~~~~--~pyli~~~~~-~iEV~~  253 (275)
T PF00780_consen  234 VAYS--SPYLIAFSSN-SIEVRS  253 (275)
T ss_pred             EEEE--CCEEEEECCC-EEEEEE
Confidence            6664  4577776654 488874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.90  E-value=0.0042  Score=64.43  Aligned_cols=199  Identities=12%  Similarity=0.168  Sum_probs=112.9

Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE  607 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~  607 (732)
                      .+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+...  +....+++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4455566799999999988999999999999999975 7888877754  457888988775444444347899999883


Q ss_pred             CC------eEEEEEc-----CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC--CCCceeEEEe------ecCCCceE
Q 004737          608 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH  667 (732)
Q Consensus       608 t~------~~i~~l~-----~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t--~~~~~~i~~~------~~~~~~I~  667 (732)
                      ..      .....+.     .+...+-.|+|++.+..|+.+. ..-..||.+..  ......+...      ...-..+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            31      1111121     2445689999999877666666 54455665543  1111111111      11234578


Q ss_pred             EEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE---EEcc--C-----CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          668 SCVFHPTFPSLLVIGC-YETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       668 sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~---~~~~--h-----~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .+.++|....|++-+. ...|..+| .+|+.+   .+..  |     -...-.|+|.++|+ |+..++-+..++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence            8999998766555554 45888899 566655   2222  1     13578999999885 4445677666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.83  E-value=0.019  Score=59.65  Aligned_cols=200  Identities=13%  Similarity=0.182  Sum_probs=114.1

Q ss_pred             EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccC-CCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          443 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ...+.+-.+.|..++|.|+.+ ++++....+.|..++. +|+.+..+.-. .+-...|++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            345667667799999999766 5556666778888886 47777776433 35578899988887777666689999999


Q ss_pred             cCCCCce--e---EEe-----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---CeeeeEEe---------ccC
Q 004737          521 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS  578 (732)
Q Consensus       521 l~s~~~~--~---~~l-----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---~~~i~~~~---------~~~  578 (732)
                      +......  .   ..+     ..++..+..++|.+.++.++++.- .....+|.+..   ...+....         .-.
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence            8432211  1   111     124556899999999888886544 44555665543   22221111         113


Q ss_pred             CeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCC---------CCEEEEEEeCCCCEEEEEeCCeEEEE
Q 004737          579 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW  645 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~---------~~V~sla~spdg~~LasgsDg~I~IW  645 (732)
                      .+..+.++|..+.+++-+. ...|.++| ..++.+..+.-..         ...-.|+|.++|++.++.--+..++|
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            4788999998888777666 56888889 5566554433221         24678999999977766555555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.82  E-value=0.012  Score=65.98  Aligned_cols=221  Identities=12%  Similarity=0.071  Sum_probs=125.4

Q ss_pred             ceEEEEEcCCCCeEEEE-eCCC----eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC----------C
Q 004737          494 WITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S  558 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasg-s~Dg----~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D----------g  558 (732)
                      .+..++++||+++||.+ +..|    .|+|+|+.+++.....+...  ....+.|.+++..++++...+          .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34467899999998866 3333    69999999976433333321  123499999988888777543          2


Q ss_pred             cEEEEECCCCeee--eEEeccC--C-eeEEEEeCCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEcCCCCCEEE
Q 004737          559 EIRYWSINNGSCA--GVFKCQS--G-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS  624 (732)
Q Consensus       559 ~I~iWDl~t~~~i--~~~~~~~--~-i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~-----~~i~~l~~h~~~V~s  624 (732)
                      .|++|.+.+....  ..+....  . ...+..+++++++++....    ..+++.|+...     ..........+....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            3788888775432  3443322  2 5578889999998876553    35888898874     333333323333334


Q ss_pred             EEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-C--eEEEEECC-CCe
Q 004737          625 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-E--TLELWNMT-ENK  696 (732)
Q Consensus       625 la~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g--~I~IwDl~-t~~  696 (732)
                      +... .+.+++...    .+.|...++...........+..+...+.-..+...+.+|++...+ +  .|++|++. +..
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            4443 444444443    4477778888765322333444455543334444445555555444 3  79999999 554


Q ss_pred             EEEEc-cCCCCeeEEEEeCCCC
Q 004737          697 TLTLS-AHDKLVSSLAASTVNG  717 (732)
Q Consensus       697 ~~~~~-~h~~~V~sla~spdg~  717 (732)
                      ...+. .-.+.|..+...+++.
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-S
T ss_pred             EeeecCCcceEEeccCCCCCCC
Confidence            44333 2334455555555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.71  E-value=0.052  Score=60.88  Aligned_cols=191  Identities=12%  Similarity=0.099  Sum_probs=101.3

Q ss_pred             cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce------eEEeecCCcceEEEEEcCC
Q 004737          473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHPS  546 (732)
Q Consensus       473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~------~~~l~~h~~~V~sl~fspd  546 (732)
                      .|.||+.. |+.+..+.-..+.|.++.|..+ ..|++...||.+++||+.. ...      +....-....+....+...
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence            48999865 4555555433388999999875 4566677999999999863 220      1111111112222233323


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCe-eeeEE-eccC---------CeeE-EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737          547 KEDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQS---------GATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLK  614 (732)
Q Consensus       547 g~~llaSgs~Dg~I~iWDl~t~~-~i~~~-~~~~---------~i~~-v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~  614 (732)
                      |  +++.. .++.|.+.+-.... ..+.+ ....         .... ..++.+....+....++.+.+.+......   
T Consensus       139 G--ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---  212 (410)
T PF04841_consen  139 G--IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---  212 (410)
T ss_pred             C--EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence            3  33222 24444443222111 11111 1000         0111 23444444555555556666554332211   


Q ss_pred             EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCC
Q 004737          615 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP  676 (732)
Q Consensus       615 l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~  676 (732)
                      +. ..+++..|++||++++|+.-. +|.+.|.+..-.   +.+.++... ......+.|.-+..
T Consensus       213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence            22 246899999999999999888 789888876443   444444433 34556677766543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.70  E-value=0.0036  Score=69.47  Aligned_cols=206  Identities=14%  Similarity=0.121  Sum_probs=121.4

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe--cc------CCCceEEEEEcC-----CC-
Q 004737          439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL-  504 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~------h~~~V~~l~fsp-----dg-  504 (732)
                      .|.++..++...++|++|+.|.=| ++|.|..+|.+.|.|++....+..-  ..      ....|+++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            477888888889999999998555 9999999999999999888777652  22      345688898862     33 


Q ss_pred             --CeEEEEeCCCeEEEEecCC---CCceeE---EeecCCcceEEEEEc-CC-C-------------------CcEEEEEe
Q 004737          505 --SRLATSSADRTVRVWDTEN---PDYSLR---TFTGHSTTVMSLDFH-PS-K-------------------EDLLCSCD  555 (732)
Q Consensus       505 --~~Lasgs~Dg~I~IWDl~s---~~~~~~---~l~~h~~~V~sl~fs-pd-g-------------------~~llaSgs  555 (732)
                        -.+++|...|.+.+|.+.-   +.+.+.   ....+.++|..|..- .+ +                   +.+++.++
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS  233 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS  233 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence              3688999999999998751   222221   122456777766632 22 1                   12444444


Q ss_pred             CCCcEEEEECCCCeeeeEEeccCC--eeEEEEe-----CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----CCEEE
Q 004737          556 NNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS  624 (732)
Q Consensus       556 ~Dg~I~iWDl~t~~~i~~~~~~~~--i~~v~~s-----p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~----~~V~s  624 (732)
                       +..|+++...+.+...... ..+  ...+++.     ..+..|++...+|.|++|.+..-+.+..+.-..    ..+..
T Consensus       234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~  311 (395)
T PF08596_consen  234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS  311 (395)
T ss_dssp             -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred             -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence             6789999998877765544 332  2233442     245667888899999999999988887766432    23445


Q ss_pred             EEEeCCCCEEEEEeCCeEEEEEC
Q 004737          625 VCWNTSGEYLASVSDELVRVWSI  647 (732)
Q Consensus       625 la~spdg~~LasgsDg~I~IWDl  647 (732)
                      .+++++|+.++-.+...+.+|.+
T Consensus       312 ssis~~Gdi~~~~gpsE~~l~sv  334 (395)
T PF08596_consen  312 SSISRNGDIFYWTGPSEIQLFSV  334 (395)
T ss_dssp             -EE-TTS-EEEE-SSSEEEEEEE
T ss_pred             cEECCCCCEEEEeCcccEEEEEE
Confidence            67788999888777655555544

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.69  E-value=0.084  Score=61.16  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=87.5

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEecc--CCC--ceEE-EEEcCCCCeEEEEe------CCCeEEEEecCCCCceeEEe
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~--~V~~-l~fspdg~~Lasgs------~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      ..++.++.|+.|...|.++|+.+-....  +..  .+++ .... ++ .++++.      .+|.|..+|.++++..-+..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4677788899999999999999866542  111  1111 1111 34 444443      26899999999887533321


Q ss_pred             ecC------------------------------CcceE-EEEEcCCCCcEEEEEeC----CC-----------cEEEEEC
Q 004737          532 TGH------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSI  565 (732)
Q Consensus       532 ~~h------------------------------~~~V~-sl~fspdg~~llaSgs~----Dg-----------~I~iWDl  565 (732)
                      ...                              ...++ .+.+.|..+.+++..+.    ++           .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            111                              01111 23555553333332222    12           5777899


Q ss_pred             CCCeeeeEEeccC----------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEE
Q 004737          566 NNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR  612 (732)
Q Consensus       566 ~t~~~i~~~~~~~----------~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i  612 (732)
                      ++|+....+....          ...-+.+..+++   .++.+..+|.++++|.++++.+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            9999887776311          112233334555   5668888999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK10115 protease 2; Provisional

Probab=97.68  E-value=0.1  Score=62.50  Aligned_cols=237  Identities=11%  Similarity=0.003  Sum_probs=122.8

Q ss_pred             eEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC------CeEEEEec
Q 004737          453 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT  521 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl  521 (732)
                      +..+.|+|||++|+.+...     ..|+|.|+.+++.+...-....  ..++|.+|++.|+....+      ..|..|++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            6678999999998876432     4688889988764322211221  459999998877665442      36788888


Q ss_pred             CCCCc-eeEEeecCCcceE-EEEEcCCCCcEEEEEe--CCCcEEEEECC--CCeeeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737          522 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       522 ~s~~~-~~~~l~~h~~~V~-sl~fspdg~~llaSgs--~Dg~I~iWDl~--t~~~i~~~~~~~~i~~v~~sp~g~~ll~~  595 (732)
                      .++.. ....+........ .+..+.++..+++.+.  .++.+.+|+..  .+.....+.....+..-.... +..++..
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~  285 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR  285 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence            87632 2233443333333 2233336666665443  34679999853  333322333323322211222 3445444


Q ss_pred             EcC----CeEEEEECCC-CeEEEEEcCC-C-CCEEEEEEeCCCCEEEEEe-CCe--EEEEECCCCCCceeEEEee-cCCC
Q 004737          596 AIE----NYISILDVET-QVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGN  664 (732)
Q Consensus       596 s~d----g~I~IwDl~t-~~~i~~l~~h-~-~~V~sla~spdg~~Lasgs-Dg~--I~IWDl~t~~~~~~i~~~~-~~~~  664 (732)
                      +..    ..|...++.. ++.. .+..+ . ..|..+.+.. +.++++.. ++.  +.+++....    .+..+. ....
T Consensus       286 tn~~~~~~~l~~~~~~~~~~~~-~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~  359 (686)
T PRK10115        286 SNRHGKNFGLYRTRVRDEQQWE-ELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA  359 (686)
T ss_pred             EcCCCCCceEEEecCCCcccCe-EEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence            432    2455556552 2222 23334 3 3678888873 33444444 664  555554322    222222 1122


Q ss_pred             ceEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCeEE
Q 004737          665 KFHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL  698 (732)
Q Consensus       665 ~I~sl~fs--pdg~-~L~sgs~d---g~I~IwDl~t~~~~  698 (732)
                      .+..+.++  +++. .++..++.   ..++.||+.+++..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~  399 (686)
T PRK10115        360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR  399 (686)
T ss_pred             eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence            23333344  3443 34333332   38999998877543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.63  E-value=0.0072  Score=71.75  Aligned_cols=141  Identities=9%  Similarity=0.105  Sum_probs=96.5

Q ss_pred             CeEEEE-eCCCeEEEEecCCCCceeEEeecCCcc-eEEEEEcC-----CCCcEEEEEeCCCcEEEEECCCCe--eee---
Q 004737          505 SRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG---  572 (732)
Q Consensus       505 ~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~h~~~-V~sl~fsp-----dg~~llaSgs~Dg~I~iWDl~t~~--~i~---  572 (732)
                      ++|+.- .....|+-.|++.++ .+..+..|... |..++-..     .....+ .|-.+..|..||.+-..  ++.   
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence            344433 345788999999887 46777766543 54443221     112233 56668889999998632  221   


Q ss_pred             -EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECC
Q 004737          573 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG  648 (732)
Q Consensus       573 -~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~  648 (732)
                       .+.......|++-+.+ ++|++|+.+|.|++||--..+....+.+-..+|.+|+.+.||++|++.++..|.+++..
T Consensus       572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             cccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence             2222334566665554 88999999999999995443444456667889999999999999999999999999863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.60  E-value=0.024  Score=63.52  Aligned_cols=190  Identities=10%  Similarity=0.108  Sum_probs=99.7

Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-----CCeeEE----EE
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM----RF  585 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-----~~i~~v----~~  585 (732)
                      .|+||+.....  +..+.-..+.|.++.|..+ +.++ .-..||.+++||+. |+.  .+...     ..+...    .+
T Consensus        62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~  134 (410)
T PF04841_consen   62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW  134 (410)
T ss_pred             EEEEECCCCCE--eEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence            47777766432  2222222278999999886 4555 44469999999987 333  22211     112111    11


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCe-EEEEE---cCCCC------CEEE-EEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737          586 QPRLGRILAAAIENYISILDVETQV-CRLKL---QGHKN------QVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKG  653 (732)
Q Consensus       586 sp~g~~ll~~s~dg~I~IwDl~t~~-~i~~l---~~h~~------~V~s-la~spdg~~Lasgs-Dg~I~IWDl~t~~~~  653 (732)
                      ..+.+ +++...++.|++..-.... ....+   .....      .+.. ..++.+..+.+... ++.+.+.+-...   
T Consensus       135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~---  210 (410)
T PF04841_consen  135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF---  210 (410)
T ss_pred             cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence            22223 4444455555554332221 11111   11000      0000 22344444444444 445554443221   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeEEEEeCCCCEE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMV  719 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~sla~spdg~~L  719 (732)
                         ..+ ...+++..+++||++++++.-..+|.+.++...-.+.+ .+. .-......+.|+-++..+
T Consensus       211 ---~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~  274 (410)
T PF04841_consen  211 ---KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV  274 (410)
T ss_pred             ---ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence               011 12468999999999999999999999999876655544 222 224566788887665433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.53  E-value=0.095  Score=57.77  Aligned_cols=221  Identities=10%  Similarity=0.096  Sum_probs=109.3

Q ss_pred             CCCEEEEEE-CCCcEEEEEcCC----CeEEEEecc---CC----CceEEEEEcCCCCeEEEEeC------CCeEEEEecC
Q 004737          461 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE  522 (732)
Q Consensus       461 dg~~Lasgs-~Dg~I~VWd~~t----~~~~~~l~~---h~----~~V~~l~fspdg~~Lasgs~------Dg~I~IWDl~  522 (732)
                      +.++|+..+ ..+.|+|+|+.+    -+..++++.   +.    ..-..+..-|+|.+++++-.      -|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777776 678999999873    345555542   11    12233445578888887632      2467777777


Q ss_pred             CCCceeEEeec---CCcceEEEEEcCCCCcEEEEEeC--------------------CCcEEEEECCCCeeeeEEeccCC
Q 004737          523 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKCQSG  579 (732)
Q Consensus       523 s~~~~~~~l~~---h~~~V~sl~fspdg~~llaSgs~--------------------Dg~I~iWDl~t~~~i~~~~~~~~  579 (732)
                      +.+. ......   ....-..+-|.|.. ++++|...                    ..++.+||+.+.+.+.++.....
T Consensus       166 tf~v-~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  166 TFEV-KGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             T--E-EEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             cccc-cceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            6442 222222   12234566677763 45545532                    35799999999999999986532


Q ss_pred             ---eeEEEEe--CCCCEEEEEEc-CCeEEEEEC-CCC----eEEEEEcCC-----------------CCCEEEEEEeCCC
Q 004737          580 ---ATQMRFQ--PRLGRILAAAI-ENYISILDV-ETQ----VCRLKLQGH-----------------KNQVHSVCWNTSG  631 (732)
Q Consensus       580 ---i~~v~~s--p~g~~ll~~s~-dg~I~IwDl-~t~----~~i~~l~~h-----------------~~~V~sla~spdg  631 (732)
                         +..+.|.  |+..+-++++. ...|..|-- +.+    +.+..+...                 ..-|+.|..|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence               4456664  44455444443 445554433 433    222223211                 2457899999999


Q ss_pred             CEEEEEe--CCeEEEEECCCCCCceeEEEeecC----------------CCceEEEEEeCCCCEEEEEEc
Q 004737          632 EYLASVS--DELVRVWSIGSGSKGECIHELSCT----------------GNKFHSCVFHPTFPSLLVIGC  683 (732)
Q Consensus       632 ~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~----------------~~~I~sl~fspdg~~L~sgs~  683 (732)
                      ++|+.++  +|.|+.||+......+.+..+..-                .+...-+..|-||+.|++..+
T Consensus       324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            9999988  999999999998776666554321                122367889999999888753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.45  E-value=0.05  Score=59.39  Aligned_cols=242  Identities=12%  Similarity=0.128  Sum_probs=120.9

Q ss_pred             EcCCCeEEEEeccCCCce-----EEEEEcCCCCeEEEEeC-CC--eEEEEecCCCCceeEEeecCC-cceEEEEEcCCCC
Q 004737          478 CTESFTVKSTLEEHTQWI-----TDVRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE  548 (732)
Q Consensus       478 d~~t~~~~~~l~~h~~~V-----~~l~fspdg~~Lasgs~-Dg--~I~IWDl~s~~~~~~~l~~h~-~~V~sl~fspdg~  548 (732)
                      |..+|..+..+..+....     +.=+|.+||+.|+.++. ||  .+.+.|+.+++  +..+.... .......++++++
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~   93 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR   93 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence            667777777775443322     23367788877666554 55  56666777654  45555443 2233566778876


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEEeccCCee-EEEEe--CCCCEEEEEEc----------------------CCeEEE
Q 004737          549 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI----------------------ENYISI  603 (732)
Q Consensus       549 ~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~-~v~~s--p~g~~ll~~s~----------------------dg~I~I  603 (732)
                      .+++.- .+..|+..|+.+.+....+..+.... ...|.  .++..++..-.                      ...|..
T Consensus        94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~  172 (386)
T PF14583_consen   94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT  172 (386)
T ss_dssp             EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred             eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence            666544 35689999999988777776655543 34443  34444332211                      124777


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCC---e--EEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCC
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGE-YLASVSDE---L--VRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~-~LasgsDg---~--I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                      .|+.+++....+. ....+..+-|+|... +|+.|-+|   .  -|||-+++... ..+++.- .....+..=-|.|||.
T Consensus       173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS  250 (386)
T ss_dssp             EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred             EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence            7888887666555 567888999999654 45555554   2  37787765322 1222222 1233345557899998


Q ss_pred             EEEEEEc-----CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737          677 SLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       677 ~L~sgs~-----dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                      .|...+.     +..|.-+|..+++...+..- .....+-.++|++++|-=+.|
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence            8776543     23677788888765533222 234456667888877654444

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.037  Score=59.36  Aligned_cols=208  Identities=13%  Similarity=0.020  Sum_probs=126.1

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec----c-CCCceEE
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----E-HTQWITD  497 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~----~-h~~~V~~  497 (732)
                      +.....+..|+..+|.    ...+. +.+.+.++..-.++..|+++.  .-+.+++.+++..+..+.    + -....++
T Consensus        43 DI~~~~i~r~~~~~g~----~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND  115 (307)
T COG3386          43 DILGGRIHRLDPETGK----KRVFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPND  115 (307)
T ss_pred             eCCCCeEEEecCCcCc----eEEEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence            3444455555555442    22222 233345555544555666553  456777777666533332    1 1245678


Q ss_pred             EEEcCCCCeEEEEeC-----C----CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-
Q 004737          498 VRFSPSLSRLATSSA-----D----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-  567 (732)
Q Consensus       498 l~fspdg~~Lasgs~-----D----g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-  567 (732)
                      +...|+|.+.++...     .    ..-.||.++-.....+.+..+-..-+.|+|+||++.++++=+..+.|..|++.. 
T Consensus       116 ~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~  195 (307)
T COG3386         116 GVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA  195 (307)
T ss_pred             eeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence            889999887765544     1    112455555223345666665666789999999988877767778898888752 


Q ss_pred             -Cee---e-eEEe--ccCCeeEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEeC-CCCEEEEEe
Q 004737          568 -GSC---A-GVFK--CQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS  638 (732)
Q Consensus       568 -~~~---i-~~~~--~~~~i~~v~~sp~g~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~V~sla~sp-dg~~Lasgs  638 (732)
                       +..   . ..+.  ..+..-.++...+|...+++...| .|.+|+.. ++.+..+.-....+++++|-- +.+.|++.+
T Consensus       196 ~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         196 TGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             cCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence             111   1 1111  224466788888888776555554 99999999 888888877667888888853 445444444

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.41  E-value=0.33  Score=57.80  Aligned_cols=276  Identities=14%  Similarity=0.127  Sum_probs=153.2

Q ss_pred             CCCeEEEEEcCCC------CEEEEEECCCcEEEE-EcCCCeEEEEe----ccCCCceEEEEEcCCCCeEEEEeCCCeEEE
Q 004737          450 TSKVESCHFSPDG------KLLATGGHDKKAVLW-CTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRV  518 (732)
Q Consensus       450 ~~~V~~lafSpdg------~~Lasgs~Dg~I~VW-d~~t~~~~~~l----~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I  518 (732)
                      ...|.|+.++|-|      +++++|..+..+.+. -..+...+...    +.-...|....|-.|..+|.++..||.+.-
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            4679999999842      268888877655543 23333333222    122345666677777899999999999877


Q ss_pred             EecCCCCceeEEe---ecCCcceEEEEEcCCCCcE------------------------------------------EEE
Q 004737          519 WDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDL------------------------------------------LCS  553 (732)
Q Consensus       519 WDl~s~~~~~~~l---~~h~~~V~sl~fspdg~~l------------------------------------------laS  553 (732)
                      |.++.........   .-...++.--.|+..+...                                          +++
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~  689 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS  689 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence            7655322111100   0011222222222222221                                          222


Q ss_pred             EeCCCcEEEEECCCCe--eeeEEeccCCeeEEEEeCCCCEEEEEEc-----------C---CeEEEEECCCCeEEEEEcC
Q 004737          554 CDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI-----------E---NYISILDVETQVCRLKLQG  617 (732)
Q Consensus       554 gs~Dg~I~iWDl~t~~--~i~~~~~~~~i~~v~~sp~g~~ll~~s~-----------d---g~I~IwDl~t~~~i~~l~~  617 (732)
                      +. .+.+++.-+..-.  .++++........+++.+....+.+.+.           +   ..++++|-++.+.+...+-
T Consensus       690 ~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef  768 (1096)
T KOG1897|consen  690 AN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF  768 (1096)
T ss_pred             ec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccc
Confidence            22 2334444333211  1223334455666777764333433332           1   1367777777665544332


Q ss_pred             -CCC---CEEEEEEeCC-CCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737          618 -HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       618 -h~~---~V~sla~spd-g~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg  681 (732)
                       ...   .|.++.|..| +.++++|.           .|.|.||.+......+.+++....+ .+.++..- +|+  +.+
T Consensus       769 ~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G-av~aL~~f-ngk--llA  844 (1096)
T KOG1897|consen  769 ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG-AVYALVEF-NGK--LLA  844 (1096)
T ss_pred             cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc-ceeehhhh-CCe--EEE
Confidence             112   3445558777 67777664           2478888887754445555544333 33333221 344  444


Q ss_pred             EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      +-+..|++|++.+.+.+ ....|..++..+...-.+..|+.|+.=++|.+
T Consensus       845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            55668999999998766 44477888999999888999999887666654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.41  E-value=0.019  Score=67.02  Aligned_cols=185  Identities=12%  Similarity=0.136  Sum_probs=105.0

Q ss_pred             CceEEEEEcCCCCeEEEEe------CCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC--------
Q 004737          493 QWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------  556 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs------~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~--------  556 (732)
                      ..+...+++|||+.++..-      .|.  .|.+++...  .......+.  ..+.-.|+|+|..+.+....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678999999999887765      244  455555432  222223332  37889999997665544322        


Q ss_pred             ---CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE---EECCCCeEE----EEEcC-CCCCEEEE
Q 004737          557 ---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVETQVCR----LKLQG-HKNQVHSV  625 (732)
Q Consensus       557 ---Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I---wDl~t~~~i----~~l~~-h~~~V~sl  625 (732)
                         .+.+.+.++..++...  .....|..+.|+|||.+++... ++.|++   -....+...    ..+.. -...+..+
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence               2344444555444333  3346799999999999988876 577777   444445311    11222 23346889


Q ss_pred             EEeCCCCEEEEEeCC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737          626 CWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE  688 (732)
Q Consensus       626 a~spdg~~LasgsDg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~  688 (732)
                      .|..++.+++...++  .+...++....  .....-......+..++-+++  .+++...++.+.
T Consensus       503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        503 DWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             eEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            999999876544444  34444444321  111011112345566666653  466666666443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00084  Score=75.36  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceE-EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      -.|.-+.|+|.-.++|++..+|.|.+..+. ...+.++.-|...++ +++|.|||+.||+|-.||+|++.|++++.....
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            357789999999999999999999999988 777888887777787 999999999999999999999999998775333


Q ss_pred             EeecCCcceEEEEEcC
Q 004737          530 TFTGHSTTVMSLDFHP  545 (732)
Q Consensus       530 ~l~~h~~~V~sl~fsp  545 (732)
                      ....-...|.++.|.+
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            3333456778888863

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.35  E-value=0.26  Score=55.05  Aligned_cols=261  Identities=14%  Similarity=0.143  Sum_probs=146.7

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEE--EE-e-ccCCCceEEEEEcC-----CCCeEEEEeCCCeEEEEecCCCC-------
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVK--ST-L-EEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD-------  525 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~--~~-l-~~h~~~V~~l~fsp-----dg~~Lasgs~Dg~I~IWDl~s~~-------  525 (732)
                      ...|++|+..|.++||+.......  .. + ..-..+|..+..-.     +...||+ =.-..+.||.+....       
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence            458999999999999998643311  11 1 23456788877642     2234444 467788888873211       


Q ss_pred             -ceeEEeecCC--cceEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737          526 -YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       526 -~~~~~l~~h~--~~V~sl~fsp----dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                       ..+.....|.  .....+++-|    .+..+++.=+.||.+.+|+-+.....+.+...--...++|.+....|++++.+
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss  195 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS  195 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence             2334444444  2333444433    23678989999999999998765444444433335568888988999999999


Q ss_pred             CeEEEEECCCC--------------------e---EEEEEcCCCCCEEEE---EEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737          599 NYISILDVETQ--------------------V---CRLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSGSK  652 (732)
Q Consensus       599 g~I~IwDl~t~--------------------~---~i~~l~~h~~~V~sl---a~spdg~~LasgsDg~I~IWDl~t~~~  652 (732)
                      ..|..|....-                    +   +-.++. -.+.+..|   .++.....|++-++..+.+.+-. + .
T Consensus       196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~  272 (418)
T PF14727_consen  196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S  272 (418)
T ss_pred             eeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence            99988864210                    0   001111 12233333   33334445666666667776653 2 1


Q ss_pred             ceeEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEE---EeCCCCEEEEE
Q 004737          653 GECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVASA  722 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fsp----dg---~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla---~spdg~~LaSg  722 (732)
                      ....+.+..  .+...+.|..    .+   ..+++++.++.+.||.=.+-..- ......+| ++.   |..-...|++-
T Consensus       273 l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~Ws-A~l~~~PV-al~v~~~~~~~G~IV~L  348 (418)
T PF14727_consen  273 LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWS-AQLPHVPV-ALSVANFNGLKGLIVSL  348 (418)
T ss_pred             EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEe-cCCCCCCE-EEEecccCCCCceEEEE
Confidence            122223322  2222222221    22   24889999999999853322211 11112222 333   33335688888


Q ss_pred             ECCCeEEE
Q 004737          723 SHDKCVKI  730 (732)
Q Consensus       723 s~DG~I~I  730 (732)
                      +.+|.+.+
T Consensus       349 s~~G~L~v  356 (418)
T PF14727_consen  349 SDEGQLSV  356 (418)
T ss_pred             cCCCcEEE
Confidence            88998865

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.34  E-value=0.19  Score=52.29  Aligned_cols=194  Identities=13%  Similarity=0.080  Sum_probs=124.2

Q ss_pred             eEEEEecc-CCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737          483 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  559 (732)
Q Consensus       483 ~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~  559 (732)
                      +.+.++.. .......+.|..++.++-+.+.-|  .|+.+|+.+++..........---..++...  +.++.-.-.++.
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence            34444432 233455788877777777777665  7999999998754333332333334455553  456666778999


Q ss_pred             EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-----CCCEEEEEEeCCCCEE
Q 004737          560 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL  634 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-----~~~V~sla~spdg~~L  634 (732)
                      ..+||..+.+.+..+...+.-..++  .++..|+.......|+++|..+.+....+...     -..++-+.|. +|.+.
T Consensus       112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy  188 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY  188 (264)
T ss_dssp             EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred             EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence            9999999999999998877777777  55678888888899999999887666655432     2245667775 56555


Q ss_pred             EEEe-CCeEEEEECCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 004737          635 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       635 asgs-Dg~I~IWDl~t~~~~~~i~~~~~---------------~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      +-.- ...|...|..++   .++..+..               ...-.+.++|.|....+++.+..
T Consensus       189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            5555 778889999888   44443321               13457899999988877777653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.26  E-value=0.061  Score=54.14  Aligned_cols=208  Identities=12%  Similarity=0.099  Sum_probs=113.4

Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcC-CCC-cEEEEEeCCCcEEEEECCC--CeeeeEEe-----
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKE-DLLCSCDNNSEIRYWSINN--GSCAGVFK-----  575 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fsp-dg~-~llaSgs~Dg~I~iWDl~t--~~~i~~~~-----  575 (732)
                      .++.+--..+.|+-||+...+.....+.+..  +.++.+-- ++. .+.+.++..-.|--||-..  ....+++.     
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d  105 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD  105 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence            3444444567777799887654333333321  33333321 222 3444444444455677432  22222211     


Q ss_pred             -ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--------CCEEEEEEeCCCCEEEEEe--CCeEEE
Q 004737          576 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--------NQVHSVCWNTSGEYLASVS--DELVRV  644 (732)
Q Consensus       576 -~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--------~~V~sla~spdg~~Lasgs--Dg~I~I  644 (732)
                       .......-..+|+|+++ .|.....=.++....+....-+.+|.        .--+.++|+.+.+.+....  +-+|.-
T Consensus       106 ~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a  184 (310)
T KOG4499|consen  106 RKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA  184 (310)
T ss_pred             HHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence             12345566788998874 44331111122222233222223332        2335789998887776665  557877


Q ss_pred             EE--CCCCCC--ceeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCC
Q 004737          645 WS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV  715 (732)
Q Consensus       645 WD--l~t~~~--~~~i~~~~~----~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spd  715 (732)
                      ||  +.++..  .+.+..++.    ..-.--.+++..+|..++++-..++|..+|..+|+.+ ++.-....|++++|--.
T Consensus       185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            88  555432  233333332    1111234556778887777777789999999999988 66666889999999643

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.33  Score=50.67  Aligned_cols=270  Identities=10%  Similarity=0.043  Sum_probs=148.8

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc--CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      +-+..+.|+  +++...+..+.-++|.|+.+-+....+..  ..+.-.++..  .|++..++..|.-+.+.|+.++..+.
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence            345667776  45777778888999999987554433321  2233444444  57888888877778889998876544


Q ss_pred             E--EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          529 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       529 ~--~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      .  .+.........++.+  | +..+.+..|+-+.+.|+....   .+........+..+..+++  +.+....+..+.+
T Consensus       163 lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli  237 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI  237 (370)
T ss_pred             eeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence            3  333334444677777  3 344456668889999997643   3344444446777766664  4444445556777


Q ss_pred             EECCCCeEEEEEcC-CCCCEEEE-EEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          604 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       604 wDl~t~~~i~~l~~-h~~~V~sl-a~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      .|..+.+....+.. ....+.++ .|.-.+++..... +.-+-+.|+.+.........+...+..-..+..  .+.++..
T Consensus       238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yi  315 (370)
T COG5276         238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYI  315 (370)
T ss_pred             EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEe
Confidence            77776653333321 12222222 2222355555555 555667777665332222222222212222222  2333333


Q ss_pred             EEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          681 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       681 gs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +..+ ...+.+....+.+ ...+....+.+.+.+-+.+++.+...++-+.||+
T Consensus       316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~  367 (370)
T COG5276         316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE  367 (370)
T ss_pred             ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence            3333 3344444433332 1112222344455555566888999999999986

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.21  E-value=0.0028  Score=72.08  Aligned_cols=137  Identities=7%  Similarity=0.099  Sum_probs=97.5

Q ss_pred             CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      |...|.--+++..+++++.|+.-|.+++|+-..+........+-.+.+..+..+++ ++++|.|+..|.|.++-+..+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhccCC
Confidence            44556666777788999999999999999988766544444444555666667766 67888899899999998765321


Q ss_pred             e-----eEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEe
Q 004737          571 A-----GVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWN  628 (732)
Q Consensus       571 i-----~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~V~sla~s  628 (732)
                      .     ....  +...|++++|++++..+++|...|.|....+.+.    .....+....+.|.-|...
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            1     1111  2456999999999999999999999999888772    1112222345667666654

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.19  E-value=0.058  Score=63.09  Aligned_cols=186  Identities=12%  Similarity=0.043  Sum_probs=110.9

Q ss_pred             CcceEEEEEcCCCCcEEEEEe-----CC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC---------
Q 004737          535 STTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---------  598 (732)
Q Consensus       535 ~~~V~sl~fspdg~~llaSgs-----~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d---------  598 (732)
                      ...+...+++|+|..++++..     .|  ..|++++.. +.. ..+..........|+|+++.+++....         
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence            346789999999988887762     23  356666653 222 333333347889999998877776533         


Q ss_pred             ---CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEE---EECCCCCCcee--EEEee-cCCCceEEE
Q 004737          599 ---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV---WSIGSGSKGEC--IHELS-CTGNKFHSC  669 (732)
Q Consensus       599 ---g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~I---WDl~t~~~~~~--i~~~~-~~~~~I~sl  669 (732)
                         +.+.+.+++.+....   ...+.|..+.|+|||..|+...++.|++   -....+. ...  ...+. .....+..+
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence               234434444433222   2356799999999999999888888777   3433332 111  11122 223346789


Q ss_pred             EEeCCCCEEEEEEcCCe--EEEEECCCCeEEEEcc--CCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          670 VFHPTFPSLLVIGCYET--LELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~--I~IwDl~t~~~~~~~~--h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      .|..++. |+++..++.  ++..++.......+..  ....+.+++-++.  .|+....+|.+.
T Consensus       503 ~W~~~~~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        503 DWRTGDS-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             eEecCCE-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            9999998 455555543  4444554333222222  3567777877753  455666777554

>PRK10115 protease 2; Provisional

Probab=97.15  E-value=0.43  Score=57.16  Aligned_cols=200  Identities=9%  Similarity=0.017  Sum_probs=106.3

Q ss_pred             CceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 004737          493 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY  562 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~i  562 (732)
                      -.+..+.|+||+++|+.+...     ..|++.|+.++......+.+-   -..++|.+|++.++++...+     ..|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            346778999999988876432     368888998765322223221   14699999988888776533     36888


Q ss_pred             EECCCC--eeeeEEeccCC-ee-EEEEeCCCCEEEEEEc---CCeEEEEECC--CCeEEEEEcCCCCCEEEEEEeCCCCE
Q 004737          563 WSINNG--SCAGVFKCQSG-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY  633 (732)
Q Consensus       563 WDl~t~--~~i~~~~~~~~-i~-~v~~sp~g~~ll~~s~---dg~I~IwDl~--t~~~i~~l~~h~~~V~sla~spdg~~  633 (732)
                      +++.++  +....+..... .. .+..+.++.++++.+.   ++.+.+|+..  .+.....+....+....+. +..+.+
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  282 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF  282 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence            899887  43444443222 22 2233447777665554   3578888853  3332222222222222222 323333


Q ss_pred             EEEEe-CC---eEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEE
Q 004737          634 LASVS-DE---LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL  700 (732)
Q Consensus       634 Lasgs-Dg---~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~~~  700 (732)
                      ++... +.   .|...++....  . ...+..+  ...+..+.+..+ ..+++...++  .|++++..+++...+
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~~--~-~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l  353 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDEQ--Q-WEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI  353 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCcc--c-CeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence            33333 22   34444444211  1 1222233  246777777732 3344444455  566667655444433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.13  E-value=0.027  Score=67.03  Aligned_cols=140  Identities=13%  Similarity=0.107  Sum_probs=98.5

Q ss_pred             CcEEEE-EeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC-------CCEEEEEEcCCeEEEEECCCCe--EEEE-Ec
Q 004737          548 EDLLCS-CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-------LGRILAAAIENYISILDVETQV--CRLK-LQ  616 (732)
Q Consensus       548 ~~llaS-gs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~-------g~~ll~~s~dg~I~IwDl~t~~--~i~~-l~  616 (732)
                      ..+|+. ......|+-.|++.|+.+..++.+..+.-..+.|+       ....++|-.++.|..||.+-..  ++.. ..
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            344433 34567899999999999999998776655666664       2356888899999999998642  2211 11


Q ss_pred             --CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          617 --GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       617 --~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                        .......|++-+.+|. ||+|+ +|.||+||-- +.  ..-..+.+.+.+|..+..+.||++|++.+ +..|.+++.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~-g~--~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDRL-GK--RAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCCce-EEEEeCCCcEEeeccc-ch--hhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence              1345677888777775 55566 9999999943 22  33445667789999999999999776654 456777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.10  E-value=0.017  Score=51.88  Aligned_cols=101  Identities=21%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             eEEEEEcC---CC-CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          453 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       453 V~~lafSp---dg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      |+++++..   || +.|++|+.|..|+||+-+  +.+..+..+ +.|++++-... ..|+.+..+|+|-+|+-.....  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW--   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW--   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence            56666655   43 479999999999999855  566666544 45777777655 6799999999999998754322  


Q ss_pred             EEeecCCcceEEEEEc---CCCCcEEEEEeCCCcEE
Q 004737          529 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fs---pdg~~llaSgs~Dg~I~  561 (732)
                      +.-.  ...++++++.   -+|..-|++|-.+|.|-
T Consensus        76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2222  2336666554   34555666777787664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.092  Score=54.36  Aligned_cols=230  Identities=12%  Similarity=0.084  Sum_probs=135.5

Q ss_pred             EEEEcCCCC-EEEEEECCCc-EEEEEcCCCeEEEEeccCCCc--eEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCC
Q 004737          455 SCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD  525 (732)
Q Consensus       455 ~lafSpdg~-~Lasgs~Dg~-I~VWd~~t~~~~~~l~~h~~~--V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~  525 (732)
                      .++|+|-.. -++.+-.-|+ ..|+|........++...++.  --.=.|++||.+|+..-.|     |.|-|||.+.+-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            477887544 4555555454 567888877665554322111  1112699999999876443     789999999765


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEe------CCC-----------cEEEEECCCCeeeeEEecc-----CCeeEE
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------NNS-----------EIRYWSINNGSCAGVFKCQ-----SGATQM  583 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs------~Dg-----------~I~iWDl~t~~~i~~~~~~-----~~i~~v  583 (732)
                      ..+-.+..|.-....+.|.+||+.+++..+      .-|           .+.+.|..++..+......     -.+..+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            556677888877888999999987776543      011           2334444455554433322     346777


Q ss_pred             EEeCCCCEEEEEEcCCe-----EEEEECCCCeEEEEEcC-------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCC
Q 004737          584 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS  649 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~-----I~IwDl~t~~~i~~l~~-------h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t  649 (732)
                      +..+++..++.+-..|.     -.+=-...++.+.-+.-       ....|-+|+.+.+..+++..+  .+...+||..+
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            77777655554433331     11111122333322221       234677888887777777777  55889999999


Q ss_pred             CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      +   ..+....    -..++-.-+...-+++.+..|.+.+|.
T Consensus       312 G---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         312 G---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             C---cEEeccc----ccccccceeccCceEEecCCceEEecc
Confidence            8   3333211    111222333444477888888888774

>smart00320 WD40 WD40 repeats

Probab=97.07  E-value=0.0014  Score=44.69  Aligned_cols=37  Identities=38%  Similarity=0.592  Sum_probs=33.3

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  478 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd  478 (732)
                      .+..+..|...|.+++|.+++.++++++.|+.|++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4556778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.06  E-value=0.0018  Score=44.04  Aligned_cols=39  Identities=41%  Similarity=0.578  Sum_probs=34.3

Q ss_pred             CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ++....+..|...|.++.|.+++.++++++.|+.|++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345666778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.02  E-value=0.04  Score=64.31  Aligned_cols=230  Identities=12%  Similarity=0.076  Sum_probs=119.7

Q ss_pred             CCCEEEEEECC------CcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCC------CeEEEEecCCCCce
Q 004737          461 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS  527 (732)
Q Consensus       461 dg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl~s~~~~  527 (732)
                      .+.+++.||.+      ..|..||..+..-.....- +...-.++++. ++.+.++|+.|      .++..||...+...
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            34566666665      3677888877633322211 22223344444 45788888888      36778888776532


Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEeccCCeeEEEE-eCCCCEEEEEEcCC--
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIEN--  599 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i~~~~~~~~i~~v~~-sp~g~~ll~~s~dg--  599 (732)
                        ....-...-..+....-+..+.++|+.||     .|-.||..+.+....-........... .-++..+++|+.++  
T Consensus       363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence              22211111112222222357788888886     477788876654433322222222222 23455666666543  


Q ss_pred             ----eEEEEECCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCceE
Q 004737          600 ----YISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH  667 (732)
Q Consensus       600 ----~I~IwDl~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~~~~~~~I~  667 (732)
                          .+..||..+.....  .+...... ..++.. ++.+++.|+ |+     +|..||..+..- ..+.........+.
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g  517 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG  517 (571)
T ss_pred             cccceEEEEcCCCCceeecCCccccccc-ceEEEE-CCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence                57889988765432  22211111 223333 455555555 55     478888877521 22221221112111


Q ss_pred             EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEE
Q 004737          668 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL  698 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~  698 (732)
                        +..-++...++|+.|+     +|..||..+++..
T Consensus       518 --~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  518 --VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             --EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence              2223455667777666     6888887777655

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.01  E-value=0.56  Score=48.81  Aligned_cols=179  Identities=9%  Similarity=0.012  Sum_probs=110.8

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCee--EEEEeCCCCEEEEEEc-CCeEEEEECCCCeE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGRILAAAI-ENYISILDVETQVC  611 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~--~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~  611 (732)
                      -...+.|..++ .++-+.+.-|  .|+.+|+.+++.......+....  .++..  ++.++--+. ++...+||..+.+.
T Consensus        46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            35577775554 5666766555  79999999999888777665532  34444  345555554 78999999999988


Q ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEEcCCeE
Q 004737          612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIGCYETL  687 (732)
Q Consensus       612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~---~~I~sl~fspdg~~L~sgs~dg~I  687 (732)
                      +.++. ..+.=+.++  .|+..|+... ...|+++|..+......+... ..+   ..++.+.|. +|...+=.-....|
T Consensus       123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            88876 345667777  3455555444 779999998876433322222 222   345667776 56555555566789


Q ss_pred             EEEECCCCeEEEEc------c-------C---CCCeeEEEEeCCCCEEEEEE
Q 004737          688 ELWNMTENKTLTLS------A-------H---DKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       688 ~IwDl~t~~~~~~~------~-------h---~~~V~sla~spdg~~LaSgs  723 (732)
                      ...|..+|++....      .       +   .+-.+.|+|.|..+.|+..+
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            99999999987321      0       1   34689999998877555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02713 hypothetical protein; Provisional

Probab=96.99  E-value=0.051  Score=63.46  Aligned_cols=216  Identities=8%  Similarity=0.011  Sum_probs=106.9

Q ss_pred             cEEEEEcCCCeEEE--EeccCCCceEEEEEcCCCCeEEEEeCC------CeEEEEecCCCCceeEEeecCC--cceEEEE
Q 004737          473 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLRTFTGHS--TTVMSLD  542 (732)
Q Consensus       473 ~I~VWd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~D------g~I~IWDl~s~~~~~~~l~~h~--~~V~sl~  542 (732)
                      .+..||..+.+-..  .+...... .+++. -++.+++.|+.+      ..+..||..+...  .....-.  ..-.+++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~~~~  348 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRFSLA  348 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhceeEE
Confidence            56777877654321  12111111 12222 256677777754      3577888876543  2111111  1111222


Q ss_pred             EcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEeccCCe--eEEEEeCCCCEEEEEEcC-----------------
Q 004737          543 FHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIE-----------------  598 (732)
Q Consensus       543 fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i~~~~~~~~i--~~v~~sp~g~~ll~~s~d-----------------  598 (732)
                      ..  ++.+.+.|+.++     .+.+||..+.+....-......  .+++ .-++..+++|+.+                 
T Consensus       349 ~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        349 VI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             EE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccc
Confidence            22  246666777653     4888998876544322211111  1111 2245556666644                 


Q ss_pred             ------CeEEEEECCCCeEEEEEcCCCCCEE-EEEEeCCCCEEEEEe-CC------eEEEEECCCCCCceeEEEeecCCC
Q 004737          599 ------NYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLASVS-DE------LVRVWSIGSGSKGECIHELSCTGN  664 (732)
Q Consensus       599 ------g~I~IwDl~t~~~i~~l~~h~~~V~-sla~spdg~~Lasgs-Dg------~I~IWDl~t~~~~~~i~~~~~~~~  664 (732)
                            ..+..||.++.+-...-.-...... +++. -++++.+.|+ ++      .+..||..+......+..+.....
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCcccccCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence                  2477888887643321111111111 2222 3455555555 32      467898886212233333333222


Q ss_pred             ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE
Q 004737          665 KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL  698 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~  698 (732)
                      ....++  -+++..++|+.++  .+..||..+.+..
T Consensus       505 ~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        505 ALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             cceeEE--ECCEEEEEeeecceeehhhcCccccccc
Confidence            222222  2677778888787  7888998888766

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.98  E-value=0.17  Score=57.17  Aligned_cols=145  Identities=11%  Similarity=0.107  Sum_probs=91.4

Q ss_pred             CCeEEEEEcCC----CCEEEEEECCCcEEEEEcC-----CCeEEEEec-cCCC--c--eEEEEEcCCCCeEEEEeCCCeE
Q 004737          451 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EHTQ--W--ITDVRFSPSLSRLATSSADRTV  516 (732)
Q Consensus       451 ~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~-~h~~--~--V~~l~fspdg~~Lasgs~Dg~I  516 (732)
                      ..|..++|.|-    ...|+..-..+.|.||-+-     ..+.+..-. ....  +  -..+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            45899999984    3345555677899999764     222221111 1111  1  2356799998888877666555


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----eEEeccCCeeEEEEeCCCCE
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGR  591 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-----~~~~~~~~i~~v~~sp~g~~  591 (732)
                      .++++......++.-....+.|.|.+|..||.+++++.+..=.-++||-......     -.|...+.|.++.-.-+ ..
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq  215 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ  215 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence            6677765554455444567889999999999999988877778899997543221     23334445555544433 33


Q ss_pred             EEEEE
Q 004737          592 ILAAA  596 (732)
Q Consensus       592 ll~~s  596 (732)
                      +++++
T Consensus       216 VAvaT  220 (671)
T PF15390_consen  216 VAVAT  220 (671)
T ss_pred             EEEEe
Confidence            44444

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.92  E-value=1.6  Score=52.42  Aligned_cols=271  Identities=11%  Similarity=0.087  Sum_probs=155.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEE-EEEcCC--CCeEEEEeCCCeEEEEecCCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPS--LSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~-l~fspd--g~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      -+.++.--.|+..++.-+.+..|.-..+|.... +.+.+--.-+ .+.. +.|+.+  ...|+++. .+.+++.-++.-.
T Consensus       628 Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iq  704 (1096)
T KOG1897|consen  628 GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSLK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQ  704 (1096)
T ss_pred             CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccchH-HhhhhcccccccCCceEEEec-CCceEEEEecchh
Confidence            345666667776655444445566666776433 3332211111 1111 223332  33455554 4567777665422


Q ss_pred             -ceeEEeecCCcceEEEEEcCCCCcEEEEEeC-----------C---CcEEEEECCCCeeeeEEeccC-----CeeEEEE
Q 004737          526 -YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------N---SEIRYWSINNGSCAGVFKCQS-----GATQMRF  585 (732)
Q Consensus       526 -~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-----------D---g~I~iWDl~t~~~i~~~~~~~-----~i~~v~~  585 (732)
                       ..+++.. -......+++.+.. .++.+.+.           .   ..++++|-++.+.+...+...     .+.++.|
T Consensus       705 kl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~  782 (1096)
T KOG1897|consen  705 KLHIRTVP-LGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKF  782 (1096)
T ss_pred             hcceeeec-CCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeee
Confidence             2234433 23445677777632 23323221           1   147777777776665544322     2445557


Q ss_pred             eCC-CCEEEEEEc----------CCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737          586 QPR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK  652 (732)
Q Consensus       586 sp~-g~~ll~~s~----------dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~  652 (732)
                      ..+ +.++++|+.          .|.|.+|.......+.....  -.+.+.+++.- +|++| ++-...|++|++.+.  
T Consensus       783 ~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkll-A~In~~vrLye~t~~--  858 (1096)
T KOG1897|consen  783 TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLL-AGINQSVRLYEWTTE--  858 (1096)
T ss_pred             cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEE-EecCcEEEEEEcccc--
Confidence            777 556666654          57899998877433333222  23455555432 45544 345778999999876  


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                       +.++.-..+..++..+...-.+..+++|.--+.|.+  |+-.++...  .-.-+..+++++.+-.+..++ -+..+|.+
T Consensus       859 -~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNl  936 (1096)
T KOG1897|consen  859 -RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNL  936 (1096)
T ss_pred             -ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccE
Confidence             455555556788899999999999999998886555  455555455  334678889999887555444 45566766


Q ss_pred             EE
Q 004737          729 KI  730 (732)
Q Consensus       729 ~I  730 (732)
                      .+
T Consensus       937 f~  938 (1096)
T KOG1897|consen  937 FT  938 (1096)
T ss_pred             EE
Confidence            54

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.87  E-value=0.95  Score=49.26  Aligned_cols=232  Identities=14%  Similarity=0.152  Sum_probs=118.4

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE---EEEe----ccCCCceEEEEEcCC---CCeEEEEeC-C--------
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSA-D--------  513 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~---~~~l----~~h~~~V~~l~fspd---g~~Lasgs~-D--------  513 (732)
                      -+.|+|.|||+++++ ...|.|++++ ..+..   +..+    .........++|+|+   ..+|++... .        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            578999999987765 5699999999 44443   2233    224456899999994   334433332 1        


Q ss_pred             CeEEEEecCCCC-------ceeEEeec---CCcceEEEEEcCCCCcEEEEEeCC------------CcEEEEECCCCee-
Q 004737          514 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC-  570 (732)
Q Consensus       514 g~I~IWDl~s~~-------~~~~~l~~---h~~~V~sl~fspdg~~llaSgs~D------------g~I~iWDl~t~~~-  570 (732)
                      ..|.-|......       ..+..+..   .......|.|.|++..++.+|+..            |.|.-.+.. ++. 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p  160 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP  160 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence            234445444331       11112222   223456799999984444444321            233333332 110 


Q ss_pred             ------------eeEEe-ccCCeeEEEEeCCCCEEEEEEc--CC--eEEEEECC--------C------C----------
Q 004737          571 ------------AGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------T------Q----------  609 (732)
Q Consensus       571 ------------i~~~~-~~~~i~~v~~sp~g~~ll~~s~--dg--~I~IwDl~--------t------~----------  609 (732)
                                  ...+. .......++|+|..+.|+++..  ++  .|.+..--        .      +          
T Consensus       161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~  240 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP  240 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred             CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence                        01111 1233567899998566665543  22  23332110        0      0          


Q ss_pred             ---eEEEEEcCCCCCEEEEEEeC-------CCCEEEEEe-CCeEEEEECCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 004737          610 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       610 ---~~i~~l~~h~~~V~sla~sp-------dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~-~~~~~~~I~sl~fspdg~~  677 (732)
                         .++..+.. ...+..+.|..       .+.+|++.. .+.|....+........... +......+..+++.|||..
T Consensus       241 ~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L  319 (331)
T PF07995_consen  241 GFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL  319 (331)
T ss_dssp             TS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred             CcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence               12233333 35567777764       344666555 66888888864422122222 2234457999999999987


Q ss_pred             EEEEEcCCeEE
Q 004737          678 LLVIGCYETLE  688 (732)
Q Consensus       678 L~sgs~dg~I~  688 (732)
                      +++...+|.|+
T Consensus       320 yv~~d~~G~iy  330 (331)
T PF07995_consen  320 YVSDDSDGKIY  330 (331)
T ss_dssp             EEEE-TTTTEE
T ss_pred             EEEECCCCeEe
Confidence            77777777765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.044  Score=60.85  Aligned_cols=128  Identities=12%  Similarity=0.087  Sum_probs=91.9

Q ss_pred             EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCC--------EEEEEeCCeEEEEECCCCCCceeEEEeec----
Q 004737          594 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHELSC----  661 (732)
Q Consensus       594 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~--------~LasgsDg~I~IWDl~t~~~~~~i~~~~~----  661 (732)
                      .+.....|+-.|++.|+.+..+.-+.. |+-+.+.|+.+        .|+.-+|..|.-||.+-.... .+.....    
T Consensus       351 ~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~q~kqy~  428 (644)
T KOG2395|consen  351 DGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVVQSKQYS  428 (644)
T ss_pred             CCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeeeeccccc
Confidence            344457899999999999999987666 77777777653        455556889999999854331 2222222    


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH  724 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~  724 (732)
                      ....+.|.+-..+| +|++|+.+|.|++||-....-. .+.+-..+|..+..+.+|++|+..+.
T Consensus       429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            23456666666666 5999999999999997332222 56678889999999999998876554

>PRK13684 Ycf48-like protein; Provisional

Probab=96.84  E-value=1  Score=49.12  Aligned_cols=269  Identities=8%  Similarity=-0.002  Sum_probs=133.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEec----cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      ...+++|+|..+.+-+|+|. ++.|  |.. +.|+.-....    .....+.++.|.++ ..+++ +..+.|  |..+++
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~Dg  117 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDG  117 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCC
Confidence            45789999986666666664 4543  332 2232222211    12334778888653 34444 344443  333332


Q ss_pred             CceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCC
Q 004737          525 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       525 ~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      ........   ........+..... ..+++.+ ..|.|..=+ +.++.=..+.  ....+..+.+.+++ .+++.+..|
T Consensus       118 G~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g-~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g~~G  193 (334)
T PRK13684        118 GKNWTRIPLSEKLPGSPYLITALGP-GTAEMAT-NVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVSSRG  193 (334)
T ss_pred             CCCCeEccCCcCCCCCceEEEEECC-Ccceeee-ccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEeCCc
Confidence            22222211   01111222222222 2233333 344332221 1122111111  13457788888875 455666666


Q ss_pred             eEEEE-ECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCE
Q 004737          600 YISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       600 ~I~Iw-Dl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~  677 (732)
                      .+..- |-....-......-...++++.+.+++..++++..|.+++=+...+.....+..- ......+..+.+.+++. 
T Consensus       194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-  272 (334)
T PRK13684        194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-  272 (334)
T ss_pred             eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence            65543 2221111222223456789999999999888877886653333443222211110 11224577889998876 


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEc----cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          678 LLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t~~~~~~~----~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++++.+|.|. .....++.....    .-......+.|..+++.++ .+..|.|..|+
T Consensus       273 ~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        273 IWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             EEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            56666777665 344555544221    2223577888876666555 56778887664

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.81  E-value=0.54  Score=48.67  Aligned_cols=237  Identities=11%  Similarity=-0.007  Sum_probs=153.1

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe-
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-  531 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-  531 (732)
                      -..++-.+||..-+++...+.|--.|..+++....--+....-..|..-||+..-++-+.. -|.-.|-++.......+ 
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence            4568888999988888888888888989998876655566667788889998876664443 45555555544322222 


Q ss_pred             -ecCCcceEEEEEcCCCCcEEEEEeCC---------CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          532 -TGHSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       532 -~~h~~~V~sl~fspdg~~llaSgs~D---------g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                       ..-........|.+.|. +-+++...         +.|++|+.-.         ......++..|+|...++.-.++.|
T Consensus       143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPq---------G~gpyGi~atpdGsvwyaslagnai  212 (353)
T COG4257         143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQ---------GGGPYGICATPDGSVWYASLAGNAI  212 (353)
T ss_pred             cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCC---------CCCCcceEECCCCcEEEEeccccce
Confidence             22245678888999874 44465421         2344444332         2457789999999999988888999


Q ss_pred             EEEECCCCeEEEEE--cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          602 SILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       602 ~IwDl~t~~~i~~l--~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      ...|..++.....-  ......-..+-.+|.++.-++.. .+.+..||.....  -....+......-.++.+...++..
T Consensus       213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW  290 (353)
T COG4257         213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVW  290 (353)
T ss_pred             EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEE
Confidence            99998776322111  11123345565667788777766 7788888876542  2223344455556677777777755


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEcc
Q 004737          679 LVIGCYETLELWNMTENKTLTLSA  702 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~~~~~~~~  702 (732)
                      ++-...+.|.-+|-++-....+..
T Consensus       291 ~sea~agai~rfdpeta~ftv~p~  314 (353)
T COG4257         291 LSEADAGAIGRFDPETARFTVLPI  314 (353)
T ss_pred             eeccccCceeecCcccceEEEecC
Confidence            555556677777777665554443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.80  E-value=0.28  Score=54.64  Aligned_cols=88  Identities=23%  Similarity=0.350  Sum_probs=56.6

Q ss_pred             EEEEcCCCCEEEEEECCCcEEE---EEcC-----CCeEEEEec---cCC--CceEEEEEcC-----------CCCeEEEE
Q 004737          455 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS  510 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~V---Wd~~-----t~~~~~~l~---~h~--~~V~~l~fsp-----------dg~~Lasg  510 (732)
                      +++.+|++++||.+..+..|.+   |+..     .........   .+.  ..|+++.|-|           |...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4788999999999988776666   6441     112222221   122  5677776643           45789999


Q ss_pred             eCCCeEEEEecCCCCceeEEeecCCcceEEEEEc
Q 004737          511 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  544 (732)
Q Consensus       511 s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs  544 (732)
                      ..+|.|++|... +.. +..-.-|.++|..|.+.
T Consensus        86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence            999999999875 332 33333367777777664

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.79  E-value=0.056  Score=63.12  Aligned_cols=218  Identities=11%  Similarity=0.036  Sum_probs=112.8

Q ss_pred             CCeEEEEeCC------CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeee
Q 004737          504 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCA  571 (732)
Q Consensus       504 g~~Lasgs~D------g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t~~~i  571 (732)
                      +.+++.|+.+      ..|..||..++......-......-.++++..  +.++++|+.|      ..+..||..+.+..
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCcee
Confidence            3444555544      36778887776432211112333345555554  3677788888      36788888877644


Q ss_pred             eEEeccCCeeEEEE-eCCCCEEEEEEcCC-----eEEEEECCCCeEEEEEcCCCCCEEEEEE-eCCCCEEEEEe-CC---
Q 004737          572 GVFKCQSGATQMRF-QPRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSVCW-NTSGEYLASVS-DE---  640 (732)
Q Consensus       572 ~~~~~~~~i~~v~~-sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~h~~~V~sla~-spdg~~Lasgs-Dg---  640 (732)
                      ..-.....-..... .-+|..+++|+.||     .|..||.++.+....-. ......+... .-+|++.++|+ ++   
T Consensus       363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~  441 (571)
T KOG4441|consen  363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSN  441 (571)
T ss_pred             ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence            42222222112222 22456677788776     48888888764332211 1112222221 22566666665 43   


Q ss_pred             ---eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEccCCCCeeEEEE
Q 004737          641 ---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA  712 (732)
Q Consensus       641 ---~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~~~~~h~~~V~sla~  712 (732)
                         ++..||..+..- ..+..+........  +-.-++..+++||.++     +|..||..+.+...+..-......+..
T Consensus       442 ~l~sve~YDP~t~~W-~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~  518 (571)
T KOG4441|consen  442 CLNSVECYDPETNTW-TLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV  518 (571)
T ss_pred             ccceEEEEcCCCCce-eecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence               678888877521 12222221111111  2233555666777665     588899998887744322222222211


Q ss_pred             -eCCCCEEEEEECCCe
Q 004737          713 -STVNGMVASASHDKC  727 (732)
Q Consensus       713 -spdg~~LaSgs~DG~  727 (732)
                       .-++...+.|+.||.
T Consensus       519 ~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  519 VVLGGKLYAVGGFDGN  534 (571)
T ss_pred             EEECCEEEEEecccCc
Confidence             124667777887774

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.78  E-value=0.14  Score=51.73  Aligned_cols=164  Identities=16%  Similarity=0.148  Sum_probs=104.7

Q ss_pred             EEEEEECCCcEEEEEc--CCCeEEEEecc-----CCCceEEEEEcCCCCeEEEEeCC---------CeEEEEecCCCCce
Q 004737          464 LLATGGHDKKAVLWCT--ESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYS  527 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~--~t~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~D---------g~I~IWDl~s~~~~  527 (732)
                      +.+.++..-.|.=||.  +..+..+++.+     .+....+-..+|+|++++-.-.|         |.++.|-....   
T Consensus        73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---  149 (310)
T KOG4499|consen   73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---  149 (310)
T ss_pred             EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---
Confidence            4455555445555773  33334444321     23456666788999985432222         45555554421   


Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE--CCCCe-----eeeEEec-----cCCeeEEEEeCCCCEEEEE
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD--l~t~~-----~i~~~~~-----~~~i~~v~~sp~g~~ll~~  595 (732)
                      +..+...-.--+.++|+.+.+.+.++-+.+-+|.-||  ..+|.     .+..++.     +-....+++.-+|+.++++
T Consensus       150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~  229 (310)
T KOG4499|consen  150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT  229 (310)
T ss_pred             ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence            2223333344467899988777887888888898888  44443     3333332     1113456677788888888


Q ss_pred             EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737          596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spd  630 (732)
                      -..++|..+|..+++.+.+++-....|+|+||--.
T Consensus       230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            88899999999999999999888899999999643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.76  E-value=0.12  Score=53.54  Aligned_cols=156  Identities=15%  Similarity=0.158  Sum_probs=106.5

Q ss_pred             CeeeeEEeccCCeeEEEEeCCCCEEE-EEEcCC-eEEEEECCCCeEEEEEcCCCC--CEEEEEEeCCCCEEEEEe-----
Q 004737          568 GSCAGVFKCQSGATQMRFQPRLGRIL-AAAIEN-YISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-----  638 (732)
Q Consensus       568 ~~~i~~~~~~~~i~~v~~sp~g~~ll-~~s~dg-~I~IwDl~t~~~i~~l~~h~~--~V~sla~spdg~~Lasgs-----  638 (732)
                      ++++...........++++|....-+ .+-.-| ...+||.........+...++  ..-.=+|+|||.+|+...     
T Consensus        58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~  137 (366)
T COG3490          58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP  137 (366)
T ss_pred             CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence            55666666666677788888755533 344444 567899988766555443222  122347999999999865     


Q ss_pred             -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc------------------CCeEEEEECCCCeEE-
Q 004737          639 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------------------YETLELWNMTENKTL-  698 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~------------------dg~I~IwDl~t~~~~-  698 (732)
                       .|.|-|||.+.+  ...+.++..++-.-..+.|.+||+.++++..                  .-++.+.|..++.++ 
T Consensus       138 ~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie  215 (366)
T COG3490         138 NRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE  215 (366)
T ss_pred             CCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence             248999999854  3677888888888999999999998887654                  114455565666655 


Q ss_pred             --EEc--cCCCCeeEEEEeCCCCEEEEEECC
Q 004737          699 --TLS--AHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       699 --~~~--~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                        ++.  .+...|..++..+|+.+++.|-..
T Consensus       216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             hccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence              233  355678899999888877766443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.74  E-value=0.081  Score=47.53  Aligned_cols=101  Identities=21%  Similarity=0.195  Sum_probs=71.1

Q ss_pred             eEEEEE---cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737          538 VMSLDF---HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  614 (732)
Q Consensus       538 V~sl~f---spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~  614 (732)
                      |+++++   .-+|..-|++|+.|..|++|+-.  +.+..+.....++.++-... ..|+.+..+|+|-+|+-.  ..+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence            445554   45666788899999999999864  67778887788999888776 779999999999999863  33444


Q ss_pred             EcCCCCCEEEEEEeC-CC---CEEEEEe-CCeEEE
Q 004737          615 LQGHKNQVHSVCWNT-SG---EYLASVS-DELVRV  644 (732)
Q Consensus       615 l~~h~~~V~sla~sp-dg---~~Lasgs-Dg~I~I  644 (732)
                      ++. +..++++++.. ++   .-|++|. +|.|-+
T Consensus        77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            443 33466766654 22   2455555 887643

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.72  E-value=0.47  Score=49.58  Aligned_cols=188  Identities=9%  Similarity=0.022  Sum_probs=106.4

Q ss_pred             ceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEE-ECCCCeE-E
Q 004737          537 TVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL-DVETQVC-R  612 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw-Dl~t~~~-i  612 (732)
                      .+.+.++++++..+.+...  ....++++..  +...........+....|++++..+++...+....++ +...+.. .
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            6889999999988877773  3344555544  3333333233467888999996666665656665665 3333322 1


Q ss_pred             EEEcC--CCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          613 LKLQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       613 ~~l~~--h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~------~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      ..+..  -...|..+.++|||..++...    ++.|.|--+......      ..+.........+..+.|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            12221  122899999999999887766    567777765432221      112222233567899999999987766


Q ss_pred             EEcCCe-EEE-EECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          681 IGCYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       681 gs~dg~-I~I-wDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      +...+. +.. +....+....+..-...+..++...+...++..+.++
T Consensus       183 ~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~~  230 (253)
T PF10647_consen  183 GRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDGG  230 (253)
T ss_pred             eCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCCc
Confidence            665552 333 4443333333322223333344434444444443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.0066  Score=68.45  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=75.8

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  571 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~-sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i  571 (732)
                      ..|..+.|+|.-..||++..+|.|.+..+.- . .+.++.-|...++ +++|.||| .+++.|-.||+|++.|++++..+
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCce
Confidence            4578899999999999999999999998873 2 3666666777777 99999995 78889999999999999999888


Q ss_pred             eE--EeccCCeeEEEEeC
Q 004737          572 GV--FKCQSGATQMRFQP  587 (732)
Q Consensus       572 ~~--~~~~~~i~~v~~sp  587 (732)
                      ..  +.....+.++.|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            76  44556677777764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.044  Score=60.87  Aligned_cols=142  Identities=16%  Similarity=0.180  Sum_probs=100.6

Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEc
Q 004737          546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ  616 (732)
Q Consensus       546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~-------ll~~s~dg~I~IwDl~t~-~-~i~~l~  616 (732)
                      +.+.++.++.....|+-.|++.|+.+...+.+..|.-+.+.|+.+.       -++|-.++.|.-||.+-. . .+....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            3345566666667899999999999999998888888888887542       466778899999998843 2 222222


Q ss_pred             CC----CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          617 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       617 ~h----~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      +|    .....|++-..+| +|++|+ +|.|++||--..   ..-..+.+.+.+|..+..+.+|++|++. ++..+.+.+
T Consensus       424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~  498 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---RAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID  498 (644)
T ss_pred             ccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---hhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence            22    2345566655555 666677 999999997332   3334567788999999999999976554 455666665


Q ss_pred             C
Q 004737          692 M  692 (732)
Q Consensus       692 l  692 (732)
                      +
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            5

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.62  E-value=1.3  Score=47.38  Aligned_cols=267  Identities=9%  Similarity=0.053  Sum_probs=121.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEc-CCCeEEEEec--cC---CCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLE--EH---TQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~--~h---~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      ...+.+|+|..+..-+|+| ..+.|  +.. +.|+.-....  ..   .-...+|.|..+ ..+++| ..+.  |+...+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~--ll~T~D   88 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGL--LLHTTD   88 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTE--EEEESS
T ss_pred             CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCce--EEEecC
Confidence            3478999999555555555 44543  333 2333222211  11   224667777643 344444 4553  233332


Q ss_pred             CCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--eccCCeeEEEEeCCCCEEEEEEcC
Q 004737          524 PDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       524 ~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~--~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      +...-..+.   .-.+....+....++ ..++.+ ..|.|+.= .+.++.=..+  ...+.+..+..++++.+++++...
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            222222221   112333444444332 333333 34444322 2222211111  123557778888888766666555


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE----eecCCCceEEEEEeCC
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPT  674 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~----~~~~~~~I~sl~fspd  674 (732)
                      ..+.-||--...-...-..-...|..+.|.|++.+.+.+..|.|++=+.....  .....    .......+..++|.++
T Consensus       166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~~  243 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRPP  243 (302)
T ss_dssp             SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESSS
T ss_pred             cEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecCC
Confidence            55667876543222222224578999999999998887778888887722110  11111    2223445889999998


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEc----cCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          675 FPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~~~~----~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ... .+++..+.+ +.....++.-...    .-...+..|.|..+.+-+ ..+.||.|.-|
T Consensus       244 ~~~-wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf-~lG~~G~ll~~  301 (302)
T PF14870_consen  244 NEI-WAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF-VLGQDGVLLRY  301 (302)
T ss_dssp             S-E-EEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE-EE-STTEEEEE
T ss_pred             CCE-EEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE-EECCCcEEEEe
Confidence            774 445556655 3455666655222    234568889987654444 45688887655

>PHA02713 hypothetical protein; Provisional

Probab=96.51  E-value=0.18  Score=58.99  Aligned_cols=177  Identities=7%  Similarity=-0.013  Sum_probs=87.0

Q ss_pred             CcEEEEEeCC------CcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEE--
Q 004737          548 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL--  613 (732)
Q Consensus       548 ~~llaSgs~D------g~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~--  613 (732)
                      +.+++.|+.+      ..+..||..+......-....+ .......-++..+++|+.++     .+..||..+.+-..  
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            4666677643      3477889877654322211111 11122233456666777653     48889988764332  


Q ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEe-CC-----------------------eEEEEECCCCCCceeEEEeecCCCceEEE
Q 004737          614 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC  669 (732)
Q Consensus       614 ~l~~h~~~V~sla~spdg~~Lasgs-Dg-----------------------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl  669 (732)
                      .+....... +++ .-++++.+.|+ ++                       .+..||..+..- ..+..+.  .......
T Consensus       384 ~mp~~r~~~-~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~--~~r~~~~  458 (557)
T PHA02713        384 DMPIALSSY-GMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFW--TGTIRPG  458 (557)
T ss_pred             CCCcccccc-cEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCC--cccccCc
Confidence            221111111 122 22566666665 42                       467787766421 1111111  1112222


Q ss_pred             EEeCCCCEEEEEEcC------CeEEEEECCC-CeEEEEc---cCCCCeeEEEEeCCCCEEEEEECCC--eEEEe
Q 004737          670 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLS---AHDKLVSSLAASTVNGMVASASHDK--CVKIW  731 (732)
Q Consensus       670 ~fspdg~~L~sgs~d------g~I~IwDl~t-~~~~~~~---~h~~~V~sla~spdg~~LaSgs~DG--~I~IW  731 (732)
                      +..-+++..++|+.+      ..+..||..+ .+.....   ........++  -++++.++|+.||  .+..|
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence            233345555666543      2478899987 5544222   2222222222  3678888999888  44444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.51  E-value=0.49  Score=49.50  Aligned_cols=195  Identities=13%  Similarity=0.127  Sum_probs=114.9

Q ss_pred             ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       489 ~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                      .+-...|.++.|+|+.+.|++......-.||=..++.. ++++. ..-.....|.+.-+ +.++++--.+..+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~-n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGG-NQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecC-CEEEEEehhcceEEEEEEcC
Confidence            44555699999999999888887777666665555553 44332 11223456677655 35555666788888887765


Q ss_pred             CeeeeEEe-----------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EEEcCC-------CCCEEEEE
Q 004737          568 GSCAGVFK-----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR---LKLQGH-------KNQVHSVC  626 (732)
Q Consensus       568 ~~~i~~~~-----------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i---~~l~~h-------~~~V~sla  626 (732)
                      ...+..++           .+.+...++|+|....++++-...-+.||.+......   .....+       -..|.++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            53222111           1455778999999999999999888888876643211   111111       12467788


Q ss_pred             EeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          627 WNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       627 ~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~---------~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      |++....|++-+  ++.+...|.....    +..+.-         .-.....++..++|. |+++++-+-.+.+
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~~----~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F  309 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGEV----IELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRF  309 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCCe----eeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceec
Confidence            887554444444  5566666665431    222111         112235567777766 4555554444433

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.50  E-value=0.59  Score=48.93  Aligned_cols=163  Identities=12%  Similarity=0.152  Sum_probs=107.0

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC-CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      +.+-...|.++.|+|+.+.|++......-.||=...|+.+.++.-. -.....|.|..++.+.++--.++.+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3444555999999999999999988888889988889999887421 223456788888888877777888888877654


Q ss_pred             Ccee---------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-ee--eEEec--------cCCeeEEE
Q 004737          525 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA--GVFKC--------QSGATQMR  584 (732)
Q Consensus       525 ~~~~---------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i--~~~~~--------~~~i~~v~  584 (732)
                      ...+         ......+.....++|.|.+..++++ -...-+.||.+.... .+  .....        -..+..+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-KEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-KERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-EccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            3211         1112225567899999997777744 445567776655322 11  00000        13366788


Q ss_pred             EeCCCCEEEEEEc-CCeEEEEECCCC
Q 004737          585 FQPRLGRILAAAI-ENYISILDVETQ  609 (732)
Q Consensus       585 ~sp~g~~ll~~s~-dg~I~IwDl~t~  609 (732)
                      |.+..+.+++-+. ++.+...|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            8876666666555 566666776543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.47  E-value=0.0032  Score=62.97  Aligned_cols=139  Identities=14%  Similarity=0.088  Sum_probs=80.6

Q ss_pred             EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EE-eccCCeeE-E
Q 004737          507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VF-KCQSGATQ-M  583 (732)
Q Consensus       507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~-~~~~~i~~-v  583 (732)
                      +..-+.|+.|+-++++..+...+....|...-.-+.+    ..-++.|+.+|.|++|......... .+ .....+.+ +
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            4444578888888887544333333333332111222    2345578889999999886321111 11 11122222 2


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCEEEEEEeCCCCEEEEE--e-CCeEEEEECCC
Q 004737          584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGS  649 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~V~sla~spdg~~Lasg--s-Dg~I~IWDl~t  649 (732)
                      ..-.++....+++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|..+  + |..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            222344567788899999999999888777666666 455555555555666655  4 66667776654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.40  E-value=0.79  Score=49.05  Aligned_cols=204  Identities=14%  Similarity=0.137  Sum_probs=97.1

Q ss_pred             CCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737          435 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSAD  513 (732)
Q Consensus       435 ~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~D  513 (732)
                      +.|..+..+..-..-.+....+....++ .+..++..|.|+.= .+.++.-. ....-.+.+..+..++||++++++...
T Consensus        88 DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G  165 (302)
T PF14870_consen   88 DGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG  165 (302)
T ss_dssp             STTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred             CCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence            3455555544222222333444444444 33333444543322 22333322 234455778999999999999998777


Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeeeE----E-eccCCeeEEEEeC
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGV----F-KCQSGATQMRFQP  587 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl-~t~~~i~~----~-~~~~~i~~v~~sp  587 (732)
                      ....-||-...... .....-...|..+.|.|++...+ . ...|.|++=+. ...+.-..    + ...-.+..++|.+
T Consensus       166 ~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~lw~-~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~  242 (302)
T PF14870_consen  166 NFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGNLWM-L-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP  242 (302)
T ss_dssp             SEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS-EEE-E-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS
T ss_pred             cEEEEecCCCccce-EEccCccceehhceecCCCCEEE-E-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC
Confidence            77778886643332 22233457899999999964434 3 36888888772 22221111    1 1122378899998


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCeEEEE
Q 004737          588 RLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVW  645 (732)
Q Consensus       588 ~g~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~V~sla~spdg~~LasgsDg~I~IW  645 (732)
                      +. .+.+++..|.+.+ ....++.-...   ..-...++.|.|.++.+-++.|.+|.|.-|
T Consensus       243 ~~-~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  243 PN-EIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             SS--EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CC-CEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            84 4555566664443 33444322222   233557889999888888888889977655

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.27  E-value=2  Score=45.48  Aligned_cols=217  Identities=15%  Similarity=0.141  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcC-------CCeEEEEecc-----CCCceEEEEEcCCCC------------eEE
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA  508 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~-------t~~~~~~l~~-----h~~~V~~l~fspdg~------------~La  508 (732)
                      -+.|+|+|.+.+-++....+...+||..       ...++.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4569999999888888788999999986       1233444432     234578888875322            367


Q ss_pred             EEeCCCeEEEEecCCCCc----eeEEee-cCCcce-EEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeee--EEecc-
Q 004737          509 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ-  577 (732)
Q Consensus       509 sgs~Dg~I~IWDl~s~~~----~~~~l~-~h~~~V-~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t~~~i~--~~~~~-  577 (732)
                      .+++||+|.-|.-.-...    ....+. .....| ..+++..  .+..|.++--..++|.|||-.-.+...  .+... 
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            888999999998532211    112221 112333 3444443  344555555567899999865332211  01100 


Q ss_pred             -------------CC---eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeC------CCCE
Q 004737          578 -------------SG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY  633 (732)
Q Consensus       578 -------------~~---i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~sp------dg~~  633 (732)
                                   +.   |+-..-.++...=+.+..-|.|.+||+.- ..++++.  +.-..-+.|+..|      .+.+
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence                         00   11111122222223333456899999874 4455553  2334456777765      3555


Q ss_pred             EEEEe-CCeEEEEECCCCCCceeEEEeecCC------CceEEEEEeC
Q 004737          634 LASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHP  673 (732)
Q Consensus       634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~------~~I~sl~fsp  673 (732)
                      |+.-- ||+|..||..++   ..+..+....      ..++.+.|..
T Consensus       264 LVGNFGDG~InaFD~~sG---~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSG---AQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EEeecCCceeEEecCCCC---ceeeeecCCCCCeEEecCeEEeeeCC
Confidence            55444 999999999887   3444333222      2345666654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.20  E-value=0.21  Score=56.51  Aligned_cols=171  Identities=11%  Similarity=0.136  Sum_probs=105.6

Q ss_pred             cceEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC----CCEEEEEEcCCeEEEEECCC-
Q 004737          536 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET-  608 (732)
Q Consensus       536 ~~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~----g~~ll~~s~dg~I~IwDl~t-  608 (732)
                      .+|..++|. ||+.++.+.-  .+|++++=|-   ..+.   ..+.|..+.|.|.    ...+++.-....|.||-+.. 
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viG---qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIG---QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEee---ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            468889997 5566665542  3444444332   2222   2356888999885    34688899999999998752 


Q ss_pred             ----CeEEEEEcC-C--CCC--EEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          609 ----QVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       609 ----~~~i~~l~~-h--~~~--V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                          .+.+..-.. .  .-+  -..+.|+|...+|++-. .+.-.+++++...  ..++.-....+.|+|.+|.+||..|
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--srVkaDi~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--SRVKADIKTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--ceEEEeccCCceEEEEEecCcCCEE
Confidence                222222111 1  112  24678999999988877 4444556665443  2222222457889999999999888


Q ss_pred             EEEEcCC-eEEEEECCCCeEE-----EEccCCCCeeEEEEeCC
Q 004737          679 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTV  715 (732)
Q Consensus       679 ~sgs~dg-~I~IwDl~t~~~~-----~~~~h~~~V~sla~spd  715 (732)
                      +++-... .-||||-......     .++.-.+.|.+|.-.-|
T Consensus       171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d  213 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD  213 (671)
T ss_pred             EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence            7776555 7889987554322     33344556666665433

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.18  E-value=1.5  Score=52.85  Aligned_cols=112  Identities=14%  Similarity=0.148  Sum_probs=69.7

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc--------eEEEEEcC----------------CCCeEEEEeCCCeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR  517 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~Dg~I~  517 (732)
                      +..|+.++.++.|.-.|..+|+.+-.+......        +..+.+..                .+..|+.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            457777788899999999999988776432211        12233321                234788888999999


Q ss_pred             EEecCCCCceeEEeecCCcceE-------------EEEEcC--CCCcEEEEEe----------CCCcEEEEECCCCeeee
Q 004737          518 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG  572 (732)
Q Consensus       518 IWDl~s~~~~~~~l~~h~~~V~-------------sl~fsp--dg~~llaSgs----------~Dg~I~iWDl~t~~~i~  572 (732)
                      -.|.++++.+. .+. ..+.|.             .+.-.|  .++.++ .++          .+|.|+-+|+++|+.+.
T Consensus       274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999987542 221 111110             011111  122333 443          26889999999999998


Q ss_pred             EEec
Q 004737          573 VFKC  576 (732)
Q Consensus       573 ~~~~  576 (732)
                      .+..
T Consensus       351 ~~~~  354 (764)
T TIGR03074       351 AWDP  354 (764)
T ss_pred             EEec
Confidence            8764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.071  Score=63.71  Aligned_cols=101  Identities=21%  Similarity=0.268  Sum_probs=71.9

Q ss_pred             CCCEEEEEECCCcEEEEEcCCC-eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceE
Q 004737          461 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  539 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~  539 (732)
                      .+..++.|+..|.|-..|+... .....=..-.++|++++|+.+|..++.|-.+|.|.+||+..++ .++.+..|..+++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k-~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK-ILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc-ceeeeeecCCccc
Confidence            4557888988899988887652 1112222345789999999999999999999999999999866 5777777766655


Q ss_pred             EEEE---cCCCCcEEEEEeCCCcEEEEEC
Q 004737          540 SLDF---HPSKEDLLCSCDNNSEIRYWSI  565 (732)
Q Consensus       540 sl~f---spdg~~llaSgs~Dg~I~iWDl  565 (732)
                      .+-+   ..++ ..+.+++..|.  +|.+
T Consensus       177 ~vi~v~~t~~n-S~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQN-SKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence            5543   3343 35557766665  5544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.17  E-value=2.6  Score=45.92  Aligned_cols=230  Identities=11%  Similarity=0.128  Sum_probs=116.9

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc--eeEEe----ecCCcceEEEEEcCC---CCcEEEEEeCC-------
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN-------  557 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l----~~h~~~V~sl~fspd---g~~llaSgs~D-------  557 (732)
                      ..+.|+|.||+++|++ ...|.|++++.. +..  .+..+    .........++++|+   ...+.++....       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3578999999877665 569999999933 332  12222    234457899999994   22333333311       


Q ss_pred             -CcEEEEECCCC--e-----ee-eEEec----cCCeeEEEEeCCCCEEEEEEcCC-------------eEEEEECCCCe-
Q 004737          558 -SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV-  610 (732)
Q Consensus       558 -g~I~iWDl~t~--~-----~i-~~~~~----~~~i~~v~~sp~g~~ll~~s~dg-------------~I~IwDl~t~~-  610 (732)
                       ..|.-|....+  .     .+ ..+..    ......+.|.|++..+++.+..+             .|.-.+....- 
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p  160 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP  160 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence             23444544433  1     11 11111    12356799999986555555422             23333332110 


Q ss_pred             ------------EEEEEcCCCCCEEEEEEeCC-CCEEEEEe--CC--eEEEEECCCCCC---------------------
Q 004737          611 ------------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DE--LVRVWSIGSGSK---------------------  652 (732)
Q Consensus       611 ------------~i~~l~~h~~~V~sla~spd-g~~Lasgs--Dg--~I~IWDl~t~~~---------------------  652 (732)
                                  ...--.++ .....++|+|. |.++++-.  |.  .|.+.  ..+..                     
T Consensus       161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCcccccc
Confidence                        00000112 23467999998 66665533  33  34333  22210                     


Q ss_pred             -----ceeEEEeecCCCceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCeEE----EEc-cCCCCeeEEEEeCC
Q 004737          653 -----GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TLS-AHDKLVSSLAASTV  715 (732)
Q Consensus       653 -----~~~i~~~~~~~~~I~sl~fspd-------g~~L~sgs~dg~I~IwDl~t~~~~----~~~-~h~~~V~sla~spd  715 (732)
                           ..++..+..| ..+..+.|...       +.++++.-..+.|...+++++..+    .+. .....+..+++.||
T Consensus       238 ~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD  316 (331)
T PF07995_consen  238 SCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD  316 (331)
T ss_dssp             S-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred             CCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence                 0122223322 44566666643       333444444458888888755433    222 34458999999999


Q ss_pred             CCEEEEEECCCeEE
Q 004737          716 NGMVASASHDKCVK  729 (732)
Q Consensus       716 g~~LaSgs~DG~I~  729 (732)
                      |.++++.+.+|.|.
T Consensus       317 G~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  317 GALYVSDDSDGKIY  330 (331)
T ss_dssp             SEEEEEE-TTTTEE
T ss_pred             CeEEEEECCCCeEe
Confidence            99888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.11  E-value=1.9  Score=47.40  Aligned_cols=188  Identities=15%  Similarity=0.174  Sum_probs=115.9

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc----CCCCe--EEEEe-CC---CeEEEEecCCCCceeE
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS----PSLSR--LATSS-AD---RTVRVWDTENPDYSLR  529 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs----pdg~~--Lasgs-~D---g~I~IWDl~s~~~~~~  529 (732)
                      |...+|+....++-+.+||+.. +.+..+..  +.++.|...    -+++.  |+.++ .+   .+|++|.++.....+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            3455777777888999999875 45555532  233333321    13332  44443 32   4799998874322343


Q ss_pred             Eeec-------CCcceEEEEEc--C-CCCcEEEEEeCCCcEEEEECC---CC----eeeeEEeccCCeeEEEEeCCCCEE
Q 004737          530 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       530 ~l~~-------h~~~V~sl~fs--p-dg~~llaSgs~Dg~I~iWDl~---t~----~~i~~~~~~~~i~~v~~sp~g~~l  592 (732)
                      .+..       ....++.+|+.  + ++..+++....+|.+.-|.+.   .+    +.++.|.....+..+........|
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL  222 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence            3321       12346777764  3 456677788889998888774   23    467888888889999999999999


Q ss_pred             EEEEcCCeEEEEECCC-----CeEEEEEcC--CCCCEEEEEEeC--CC-CEEEEEe--CCeEEEEECCCC
Q 004737          593 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SG-EYLASVS--DELVRVWSIGSG  650 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t-----~~~i~~l~~--h~~~V~sla~sp--dg-~~Lasgs--Dg~I~IWDl~t~  650 (732)
                      +++-.+--|..|+.+-     +..+....+  ....|..|++-.  ++ .||++++  +++..||+....
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999999999999872     223323322  345777787753  43 4777777  889999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.07  E-value=3.3  Score=46.23  Aligned_cols=147  Identities=11%  Similarity=0.068  Sum_probs=82.3

Q ss_pred             eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCce--eEEE
Q 004737          581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHE  658 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~--~i~~  658 (732)
                      ..+...+++..++++.....++-||--...-...-......+..+.|.+++.+++++.+|.+.+ ....+....  .+.+
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~  320 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEE  320 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceee
Confidence            3345556655444443333333344322110111122345788999999999998887776543 333332111  2222


Q ss_pred             eec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          659 LSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       659 ~~~--~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~----~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ...  ....+..+.|.+++. +++++..|.+... ...++....    ..-...++.+.|.++++-++ .+.+|.|.-|
T Consensus       321 ~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il~~  396 (398)
T PLN00033        321 ADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLLRY  396 (398)
T ss_pred             cccCCCCcceEEEEEcCCCc-EEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEEEe
Confidence            222  224588899998876 6677777766655 455555422    22345688999877665554 5678887665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.07  E-value=0.075  Score=63.79  Aligned_cols=144  Identities=13%  Similarity=0.078  Sum_probs=95.0

Q ss_pred             ceEEEEEcCCCCeEEEE--eCCCeEEEEecCCCCcee----EEee------cCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737          494 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasg--s~Dg~I~IWDl~s~~~~~----~~l~------~h~~~V~sl~fspdg~~llaSgs~Dg~I~  561 (732)
                      .|..+...+|+...++.  +.+-.|..||+++-....    +-+.      ....-..++.|+|.-....+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            45555666676654443  334588999987532111    1111      12234568889987666666777899999


Q ss_pred             EEECCCCe-eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEeCCCCEEEE
Q 004737          562 YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS  636 (732)
Q Consensus       562 iWDl~t~~-~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~V~sla~spdg~~Las  636 (732)
                      +..+..-. .+..+......++++|+|.|..+++|-..|++.-|...-. ....+.+    ....|.||+|-....++++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            88775322 2233455567899999999999999999999998875432 2222221    2468999999988888776


Q ss_pred             Ee
Q 004737          637 VS  638 (732)
Q Consensus       637 gs  638 (732)
                      -+
T Consensus       261 y~  262 (1405)
T KOG3630|consen  261 YG  262 (1405)
T ss_pred             ec
Confidence            55

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.82  E-value=2.1  Score=44.63  Aligned_cols=140  Identities=18%  Similarity=0.168  Sum_probs=87.9

Q ss_pred             ceEEEEEcCCCCeEEEEe---CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCe
Q 004737          494 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS  569 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs---~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD-l~t~~  569 (732)
                      .+...++++++..+|...   ....+.++......  ...+.+  ..+....|++++ .+.+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~g--~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLTG--GSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeeccC--CccccccccCCC-CEEEEEcCCCceEEEEecCCCc
Confidence            688999999999887766   33456666554322  222232  368888999995 5554555555566663 33332


Q ss_pred             ee-eEEec--c-CCeeEEEEeCCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEcCCCCCEEEEEEeCCCCE
Q 004737          570 CA-GVFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY  633 (732)
Q Consensus       570 ~i-~~~~~--~-~~i~~v~~sp~g~~ll~~s~---dg~I~IwDl~---t~------~~i~~l~~h~~~V~sla~spdg~~  633 (732)
                      .. ..+..  . ..|..+.++|||.+++....   ++.|.+--+.   .+      ..+.........+..+.|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            22 11211  1 27999999999999888773   4667766443   22      111222233568899999999998


Q ss_pred             EEEEe
Q 004737          634 LASVS  638 (732)
Q Consensus       634 Lasgs  638 (732)
                      ++.+.
T Consensus       180 ~V~~~  184 (253)
T PF10647_consen  180 VVLGR  184 (253)
T ss_pred             EEEeC
Confidence            88777

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA03098 kelch-like protein; Provisional

Probab=95.80  E-value=0.36  Score=56.10  Aligned_cols=151  Identities=9%  Similarity=0.039  Sum_probs=73.4

Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEEEE
Q 004737          548 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK  614 (732)
Q Consensus       548 ~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d------g~I~IwDl~t~~~i~~  614 (732)
                      +.+++.|+.+     ..+..||..+.+....-....+  -.+++ .-++..++.|+.+      ..+..||..+.+-...
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            4566677654     3577888876654332211111  11222 2344556666632      4688999887643321


Q ss_pred             --EcCCCCCEEEEEEeCCCCEEEEEe-CC--------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004737          615 --LQGHKNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  683 (732)
Q Consensus       615 --l~~h~~~V~sla~spdg~~Lasgs-Dg--------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~  683 (732)
                        +..... -.+++. .++.+++.|+ ++        .+.+||..+..- ..+..+.........+.+  ++..+++|+.
T Consensus       422 ~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~  496 (534)
T PHA03098        422 SPLPISHY-GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGD  496 (534)
T ss_pred             CCCCcccc-CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence              111111 112222 3455555554 21        388888876521 111111111111122222  5666666655


Q ss_pred             C-----CeEEEEECCCCeEEEEccCC
Q 004737          684 Y-----ETLELWNMTENKTLTLSAHD  704 (732)
Q Consensus       684 d-----g~I~IwDl~t~~~~~~~~h~  704 (732)
                      +     ..|.+||..++....+....
T Consensus       497 ~~~~~~~~v~~yd~~~~~W~~~~~~p  522 (534)
T PHA03098        497 KYEYYINEIEVYDDKTNTWTLFCKFP  522 (534)
T ss_pred             cCCcccceeEEEeCCCCEEEecCCCc
Confidence            4     47899999888766444433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=3.4  Score=43.41  Aligned_cols=252  Identities=12%  Similarity=0.030  Sum_probs=135.2

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEcCCC
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      =+++.|..+.....++..+... +--.++..  .|++..++..|.-+.+.|+.+-   .+...+.........++.+  |
T Consensus       107 GL~IvDIS~P~sP~~~~~lnt~-gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--G  181 (370)
T COG5276         107 GLRIVDISTPDSPTLIGFLNTD-GYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--G  181 (370)
T ss_pred             ceEEEeccCCCCcceeccccCC-ceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--c
Confidence            3456666665544444444431 23344444  4778888886777778887653   3334444444445667775  6


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCc-ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCee
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGAT  581 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~-~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~  581 (732)
                      ++-+.+..|+-+.|.|+.++..+...-.-..+ .+.++..+++ ..++ +-. +--+.+-|....+....+..  ...+.
T Consensus       182 n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn-r~y~-vvy-~egvlivd~s~~ssp~~~gsyet~~p~  258 (370)
T COG5276         182 NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN-RAYL-VVY-DEGVLIVDVSGPSSPTVFGSYETSNPV  258 (370)
T ss_pred             CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC-eeEE-EEc-ccceEEEecCCCCCceEeeccccCCcc
Confidence            67778889999999999987654433222233 6777777765 2333 333 34477778776654444332  12222


Q ss_pred             EE-EEeCCCCEEEEEEcCCeEEEEECCCCeE---EEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEE
Q 004737          582 QM-RFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       582 ~v-~~sp~g~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~  657 (732)
                      ++ .+.-.+++..++..+..+-+.|+.....   ...+......-..+..  .+.++..+......+-+....+   ...
T Consensus       259 ~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s---~m~  333 (370)
T COG5276         259 SISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPS---MMD  333 (370)
T ss_pred             cccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChh---hcc
Confidence            22 3333456666666666666777654321   1111111112222322  2344444442244455544331   111


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ........+.++..+-+.+.+.....++.+.||+.
T Consensus       334 ~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         334 KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             cccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence            11122233445555555567778888888888875

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.60  E-value=2.3  Score=44.19  Aligned_cols=210  Identities=10%  Similarity=0.051  Sum_probs=129.7

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  573 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~  573 (732)
                      .-..|+-.+||..-+++...+.|--.|-.+++. ...-.+....-..|..-||+...++-.+  .-|.-+|-++.+..+-
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~~--~aI~R~dpkt~evt~f  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDTG--LAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecCc--ceeEEecCcccceEEe
Confidence            456778889999999998888888888888774 3333444555677888898876663222  2566667665543321


Q ss_pred             -Ee---ccCCeeEEEEeCCCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C
Q 004737          574 -FK---CQSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D  639 (732)
Q Consensus       574 -~~---~~~~i~~v~~sp~g~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D  639 (732)
                       +.   .........|.+.|...+++...         +.|++|+..          ....-+.||..|||.+.++.- +
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag  209 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG  209 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence             11   22446778899998888877631         234444332          233557889999999887766 7


Q ss_pred             CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCC
Q 004737          640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG  717 (732)
Q Consensus       640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~  717 (732)
                      +.|-..|..++.. +.+..-.........+-.+|.+...++....+.++.||-......  .+.+....-.++.....++
T Consensus       210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr  288 (353)
T COG4257         210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR  288 (353)
T ss_pred             cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence            7788888776632 222222222333445556677777777667778888877655433  3333333444444443333

>PLN02153 epithiospecifier protein

Probab=95.55  E-value=1.5  Score=47.71  Aligned_cols=175  Identities=8%  Similarity=-0.035  Sum_probs=80.9

Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCeeeeEEec-----cCC-eeEEEEeCCCCEEEEEEcC-----------CeEEEEE
Q 004737          548 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----QSG-ATQMRFQPRLGRILAAAIE-----------NYISILD  605 (732)
Q Consensus       548 ~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~-----~~~-i~~v~~sp~g~~ll~~s~d-----------g~I~IwD  605 (732)
                      ..+++.|+.+     ..+.+||+.+.+-...-..     ... ....+...++..++.|+.+           ..|.+||
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd  165 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN  165 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence            4566666643     3578899887654432211     111 1112222344556666643           2577899


Q ss_pred             CCCCeEEEEEcCC-----CCCEEEEEEeCCCCEEEEEe-C-------------CeEEEEECCCCCCceeEEEee-cCCCc
Q 004737          606 VETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS-CTGNK  665 (732)
Q Consensus       606 l~t~~~i~~l~~h-----~~~V~sla~spdg~~Lasgs-D-------------g~I~IWDl~t~~~~~~i~~~~-~~~~~  665 (732)
                      .++.+-.. +...     ...-.+++. -++++++.++ +             ..|.+||+.+..- ..+.... .....
T Consensus       166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r  242 (341)
T PLN02153        166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSAR  242 (341)
T ss_pred             CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCc
Confidence            88764332 1111     111112222 2455444433 2             3588888876521 1111110 01111


Q ss_pred             eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEEccC------CCC--eeEEEEeCCCCEEEEEE
Q 004737          666 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAH------DKL--VSSLAASTVNGMVASAS  723 (732)
Q Consensus       666 I~sl~fspdg~~L~sgs~d--------------g~I~IwDl~t~~~~~~~~h------~~~--V~sla~spdg~~LaSgs  723 (732)
                      ....+..-+++.++.|+..              ..|+.||..+.....+...      ...  ..++.+..++++++.|+
T Consensus       243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG  322 (341)
T PLN02153        243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG  322 (341)
T ss_pred             ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence            1112223345666666641              2688899887765543211      111  12333344456777776


Q ss_pred             CC
Q 004737          724 HD  725 (732)
Q Consensus       724 ~D  725 (732)
                      .+
T Consensus       323 ~~  324 (341)
T PLN02153        323 KL  324 (341)
T ss_pred             cC
Confidence            53

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.42  E-value=5.7  Score=44.23  Aligned_cols=220  Identities=10%  Similarity=0.062  Sum_probs=104.2

Q ss_pred             CCCeEEEEe-CCCeEEEEecCCCCc---eeEEeec---CC----cceEEEEEcCCCCcEEEEE--eC----CCcEEEEEC
Q 004737          503 SLSRLATSS-ADRTVRVWDTENPDY---SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--DN----NSEIRYWSI  565 (732)
Q Consensus       503 dg~~Lasgs-~Dg~I~IWDl~s~~~---~~~~l~~---h~----~~V~sl~fspdg~~llaSg--s~----Dg~I~iWDl  565 (732)
                      +.++|+..+ ..+.|.|.|+.+.-.   ..+++..   +.    .....+..-|+|+.++ ++  +.    -|.+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence            456777776 578999999984321   1222221   11    1222334456664444 43  22    246888898


Q ss_pred             CCCeeeeEEeccCC----eeEEEEeCCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEcCCCC-
Q 004737          566 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN-  620 (732)
Q Consensus       566 ~t~~~i~~~~~~~~----i~~v~~sp~g~~ll~~s~--------------------dg~I~IwDl~t~~~i~~l~~h~~-  620 (732)
                      ++.+.....+....    -..+-|.|..+.+++...                    ...+.+||+.+.+.+.++.-... 
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            88888777765333    456778888777777643                    34699999999999988874332 


Q ss_pred             -CEEEEEEeC--CCCEEEEEe--CCeEEEEEC-CCCCC-ceeEEEeecC-----------------CCceEEEEEeCCCC
Q 004737          621 -QVHSVCWNT--SGEYLASVS--DELVRVWSI-GSGSK-GECIHELSCT-----------------GNKFHSCVFHPTFP  676 (732)
Q Consensus       621 -~V~sla~sp--dg~~Lasgs--Dg~I~IWDl-~t~~~-~~~i~~~~~~-----------------~~~I~sl~fspdg~  676 (732)
                       ....|.|..  +..+=++++  ...|..|-- ..+.- .+.+..+...                 ..-|+.+.+|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence             345666654  445544444  555555544 32211 1112222111                 23478899999999


Q ss_pred             EEEEEEc-CCeEEEEECCCCe---EE-E-Ecc---------------CCCCeeEEEEeCCCCEEEEEE
Q 004737          677 SLLVIGC-YETLELWNMTENK---TL-T-LSA---------------HDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       677 ~L~sgs~-dg~I~IwDl~t~~---~~-~-~~~---------------h~~~V~sla~spdg~~LaSgs  723 (732)
                      +|++.+. .|.|+.||+....   +. . ..+               -.+...-+..|.||+.|+..+
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            9988875 6799999997643   22 1 111               112346678889998877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.41  E-value=2.2  Score=51.55  Aligned_cols=67  Identities=10%  Similarity=0.064  Sum_probs=46.1

Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEEeccCCee-------------EEEEeC--CCCEEEEEEc----------CCeEEEE
Q 004737          550 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL  604 (732)
Q Consensus       550 llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~-------------~v~~sp--~g~~ll~~s~----------dg~I~Iw  604 (732)
                      .++.++.|+.|.-.|.++|+.+..+...+.+.             .+.-.|  .++.+++++.          +|.|+-|
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            45567779999999999999887765433221             011111  1356666643          5889999


Q ss_pred             ECCCCeEEEEEc
Q 004737          605 DVETQVCRLKLQ  616 (732)
Q Consensus       605 Dl~t~~~i~~l~  616 (732)
                      |+++++.+..+.
T Consensus       342 Da~TGkl~W~~~  353 (764)
T TIGR03074       342 DVNTGALVWAWD  353 (764)
T ss_pred             ECCCCcEeeEEe
Confidence            999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.38  E-value=1.2  Score=49.64  Aligned_cols=71  Identities=13%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE-EEEEEeCC-----------------CCEEEEEe--C
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV-HSVCWNTS-----------------GEYLASVS--D  639 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V-~sla~spd-----------------g~~Lasgs--D  639 (732)
                      +.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.= .-+.....                 ..+|+.-.  .
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            6788999997777776666999999999998888888755421 11111111                 12344433  7


Q ss_pred             CeEEEEECCCC
Q 004737          640 ELVRVWSIGSG  650 (732)
Q Consensus       640 g~I~IWDl~t~  650 (732)
                      |.|.||+++.+
T Consensus       390 g~lEvW~~~~g  400 (415)
T PF14655_consen  390 GILEVWSMRQG  400 (415)
T ss_pred             CeEEEEecCCC
Confidence            89999999887

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.34  E-value=0.032  Score=56.01  Aligned_cols=136  Identities=15%  Similarity=0.115  Sum_probs=80.5

Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE-E
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-S  668 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~-s  668 (732)
                      +.+.+.++.|.-++++.-+....-. -+... ..+  ..-+.-+++|. +|.|++|...-..  .....+......|. .
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLG  107 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-eee--cccCceEEeecccceEEEecCCccc--hHHHhhhcccccceec
Confidence            5566677888877776543221111 11111 111  12234455666 9999999876321  10001111112222 2


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCC-CCeeEEEEeCCCCEEEEE--ECCCeEEEeC
Q 004737          669 CVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK  732 (732)
Q Consensus       669 l~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~-~~V~sla~spdg~~LaSg--s~DG~I~IWD  732 (732)
                      +..-.++.+.++++.++.|+.|++.-++.+.+. .|. ..+..+..+..+++|+.+  |.|..++.|+
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence            233345567899999999999999999988444 555 566677777777788888  8888888885

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.34  E-value=8.2  Score=47.04  Aligned_cols=177  Identities=16%  Similarity=0.196  Sum_probs=97.4

Q ss_pred             cCCCceEEEEEc---C----CCCeEEEEeCCCeEEEEecCCCC--------------ceeEEeec---CCcceEEEEEcC
Q 004737          490 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTENPD--------------YSLRTFTG---HSTTVMSLDFHP  545 (732)
Q Consensus       490 ~h~~~V~~l~fs---p----dg~~Lasgs~Dg~I~IWDl~s~~--------------~~~~~l~~---h~~~V~sl~fsp  545 (732)
                      ....+|..|+|.   .    ..++|++ -....+.|+...-.+              .++..+..   ...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788889887   2    1234444 355567777622111              01112221   123566778887


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 004737          546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV  625 (732)
Q Consensus       546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sl  625 (732)
                      ....-||..+..|...|||+.......     ....          -+.....|.| ++|.+.          ...-..|
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~----------~~~~~~~gsi-~~d~~e----------~s~w~rI  209 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNL----------RLSRNISGSI-IFDPEE----------LSNWKRI  209 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccC-----Ccce----------eeccCCCccc-cCCCcc----------cCcceee
Confidence            766677777778888888872111000     1111          1111112333 223221          1345678


Q ss_pred             EEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          626 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       626 a~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      +|.++...|++++...+.++|+.+......+ ........|..+.-++.....+..-....|...++..
T Consensus       210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            8988888899899888999999886432221 1222446688888887733222233345677777766

These proteins are found in fungi.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.21  E-value=0.84  Score=50.41  Aligned_cols=144  Identities=10%  Similarity=0.009  Sum_probs=82.1

Q ss_pred             CCeeEEEEeCCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCe
Q 004737          578 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL  641 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s-----------~dg-~I~IwDl~t--~~--~i~~l~~h~~~V~sla~spdg~~LasgsDg~  641 (732)
                      .....++|.++|+.+++-.           ..+ .|.+++-..  ++  ....+.........|++.+++ +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4466788888877665542           123 777776543  22  223333334456889999988 444 44334


Q ss_pred             EEEE-ECCCCC----CceeE-EEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CeEEEEEC
Q 004737          642 VRVW-SIGSGS----KGECI-HELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNM  692 (732)
Q Consensus       642 I~IW-Dl~t~~----~~~~i-~~~~~~----~~~I~sl~fspdg~~L~sgs~d-------------------g~I~IwDl  692 (732)
                      |..| |.....    ..+.+ ..+...    ......++|.|||.+.++.+..                   +.|..++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            4434 543211    11222 223221    3447789999999866655521                   34666666


Q ss_pred             CCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          693 TENKTLTLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       693 ~t~~~~~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      .+++...+...-.....++|++++.++++-.
T Consensus       172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            6655444333334567899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.14  E-value=0.066  Score=63.98  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737          588 RLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  665 (732)
Q Consensus       588 ~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~  665 (732)
                      .+..+++++..|.+..+|+...-. ...-..-.++|++++|+.+|.+++.|- +|.|.+||+..+   +.++.+..+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCc
Confidence            345688888889999999876422 122222457999999999999999988 999999999987   444444444444


Q ss_pred             ---eEEEEEeCCCCEEEEEEcCCe
Q 004737          666 ---FHSCVFHPTFPSLLVIGCYET  686 (732)
Q Consensus       666 ---I~sl~fspdg~~L~sgs~dg~  686 (732)
                         +..+.+..++..++++...|.
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc
Confidence               444455566666777776665

>PRK13684 Ycf48-like protein; Provisional

Probab=95.12  E-value=2.7  Score=45.81  Aligned_cols=150  Identities=11%  Similarity=0.050  Sum_probs=86.5

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      ...+.++.+.+++.+++++ ..|.+..- .+.+..... ....-...++++.+.+++. +++.+ ..|.+++=..+.+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence            4578999999998776665 45544432 112211122 2223346789999999865 44344 457665323343332


Q ss_pred             eeEEec-----cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCeE
Q 004737          571 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV  642 (732)
Q Consensus       571 i~~~~~-----~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~V~sla~spdg~~LasgsDg~I  642 (732)
                      -.....     ...+..+.+.+++. +++++.+|.|.. ....++.-...   ..-....+.+.|..+++.+++|..|.|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i  325 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL  325 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence            222111     13467788888654 556666776653 33433322222   122346788888888888888889988


Q ss_pred             EEEEC
Q 004737          643 RVWSI  647 (732)
Q Consensus       643 ~IWDl  647 (732)
                      ..|+-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            87764

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.06  E-value=7.5  Score=43.58  Aligned_cols=224  Identities=12%  Similarity=0.092  Sum_probs=121.2

Q ss_pred             CCeEEEEeCCCeEEEEecCCCCce---eEEeecCCcceEEEEEcC---C-CCcEEEEEeCCCcEEEEECCC--Ce-----
Q 004737          504 LSRLATSSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHP---S-KEDLLCSCDNNSEIRYWSINN--GS-----  569 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~---~~~l~~h~~~V~sl~fsp---d-g~~llaSgs~Dg~I~iWDl~t--~~-----  569 (732)
                      ...|++|+..|.++||+.......   +..-..-..+|..+.+-.   . ....||.- .-..+.||.+..  +.     
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCc
Confidence            468999999999999998654422   122223456788777542   1 22344333 245677777621  11     


Q ss_pred             -----eeeEEeccCCeeEEEEeCCC-----CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737          570 -----CAGVFKCQSGATQMRFQPRL-----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       570 -----~i~~~~~~~~i~~v~~sp~g-----~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-  638 (732)
                           .+...........+++-|-|     ..+.+=+.||.+.+|+-+.-...+.+.. .--.-.++|.+....|++++ 
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence                 11222223445555555432     4567778899999999887655555543 22223467777777777777 


Q ss_pred             CCeEEEEECCCC--------------------CCceeEEEeecCCCceEEEE---EeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          639 DELVRVWSIGSG--------------------SKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       639 Dg~I~IWDl~t~--------------------~~~~~i~~~~~~~~~I~sl~---fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +..|..|....-                    +....-.++. -+..+..+.   ++.....+++ -.+..+++.+. +|
T Consensus       195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~Ivv-Lger~Lf~l~~-~G  271 (418)
T PF14727_consen  195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVV-LGERSLFCLKD-NG  271 (418)
T ss_pred             ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEE-EecceEEEEcC-CC
Confidence            778888876321                    0001111111 123333333   3323333333 33446777665 34


Q ss_pred             eEEEEccCCCCeeEEE-Ee----CCC---CEEEEEECCCeEEEeC
Q 004737          696 KTLTLSAHDKLVSSLA-AS----TVN---GMVASASHDKCVKIWK  732 (732)
Q Consensus       696 ~~~~~~~h~~~V~sla-~s----pdg---~~LaSgs~DG~I~IWD  732 (732)
                      .+......+....|++ |.    .++   ..++.++.++.+.||+
T Consensus       272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~  316 (418)
T PF14727_consen  272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE  316 (418)
T ss_pred             eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence            5443333333333332 21    122   2478888999998874

>PHA03098 kelch-like protein; Provisional

Probab=95.04  E-value=0.78  Score=53.27  Aligned_cols=183  Identities=10%  Similarity=0.028  Sum_probs=88.0

Q ss_pred             CCCEEEEEECCC------cEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCCce
Q 004737          461 DGKLLATGGHDK------KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS  527 (732)
Q Consensus       461 dg~~Lasgs~Dg------~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~~~  527 (732)
                      ++..++.||.++      .+..||..+.+-...  +.........+.+  ++.+++.|+.+     ..+..||..+....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            556667776542      577888776554221  1111112222222  56777788765     35778888765532


Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC-
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-  598 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d-  598 (732)
                      ...-..+...-.+++..  ++.+++.|+.+      ..+..||+.+.+....-....+  ..++ ...++..+++|+.+ 
T Consensus       372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence            11100111111122222  24566666632      3588899887654432221111  1122 22344555555542 


Q ss_pred             -------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCC
Q 004737          599 -------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG  650 (732)
Q Consensus       599 -------g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~  650 (732)
                             ..+.+||..+.+-...  +...... .+++. -++++++.|+ +     ..|.+||..+.
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                   2388999887643321  1111111 12222 2566666665 3     26777877654

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.00  E-value=1.3  Score=48.86  Aligned_cols=142  Identities=11%  Similarity=0.113  Sum_probs=79.6

Q ss_pred             CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEEcCC--Ce--EEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737          451 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR  514 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs-----------~Dg-~I~VWd~~t--~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg  514 (732)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+...-.....++|.+++ +++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3467899999999877653           223 777776542  32  234444444556889999888 444 44454


Q ss_pred             eEEEEecCCC-----Cc--eeEEeec----CCcceEEEEEcCCCCcEEEEEeC------------------CCcEEEEEC
Q 004737          515 TVRVWDTENP-----DY--SLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI  565 (732)
Q Consensus       515 ~I~IWDl~s~-----~~--~~~~l~~----h~~~V~sl~fspdg~~llaSgs~------------------Dg~I~iWDl  565 (732)
                      ..++.|.+..     +.  .+..+..    +......+.|.|+|..++..++.                  .|.|..+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3344455421     11  1111222    12347789999998655544421                  134555666


Q ss_pred             CCCeeeeEEeccCCeeEEEEeCCCCEEEE
Q 004737          566 NNGSCAGVFKCQSGATQMRFQPRLGRILA  594 (732)
Q Consensus       566 ~t~~~i~~~~~~~~i~~v~~sp~g~~ll~  594 (732)
                      ..++.............++|++++..+++
T Consensus       172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFC  200 (367)
T ss_pred             CCCeEEEEecCcCCCccceECCCCCEEEE
Confidence            55443322222334567899888766554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.97  E-value=7.2  Score=42.95  Aligned_cols=150  Identities=9%  Similarity=0.058  Sum_probs=86.1

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccC--CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCC-cc
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TT  537 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~-~~  537 (732)
                      |+ .++++..||.|.-.|.++++.+.....-  ...+.+-.+..+|+ |+.++.++.+..+|.+++.. +..+.... ..
T Consensus        68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~~  144 (370)
T COG1520          68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSPY  144 (370)
T ss_pred             CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCeE
Confidence            45 4444577888888888888765433211  12333333333665 77788899888899877764 33333222 11


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEE--EEeCCCCEEEEEEc--CCeEEEEECCCCeEE
Q 004737          538 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQM--RFQPRLGRILAAAI--ENYISILDVETQVCR  612 (732)
Q Consensus       538 V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v--~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i  612 (732)
                      +..-.+..+  ..++.++.++.+...|..+++....+..... -...  ........++.+..  ++.+.-+|.+++...
T Consensus       145 ~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~  222 (370)
T COG1520         145 YASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLK  222 (370)
T ss_pred             EecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEe
Confidence            112222222  2333444688999999998888776554331 0000  01123345566655  667888888888776


Q ss_pred             EEE
Q 004737          613 LKL  615 (732)
Q Consensus       613 ~~l  615 (732)
                      ...
T Consensus       223 w~~  225 (370)
T COG1520         223 WSQ  225 (370)
T ss_pred             eee
Confidence            653

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.75  E-value=5.3  Score=42.57  Aligned_cols=164  Identities=9%  Similarity=0.099  Sum_probs=94.1

Q ss_pred             cEEEEECCCCeeeeEEeccCC-------eeEEEEeCCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEcCC-------
Q 004737          559 EIRYWSINNGSCAGVFKCQSG-------ATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGH-------  618 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~~~-------i~~v~~sp~g-----~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h-------  618 (732)
                      .|.+||+.+.+.++.+..+..       ...+.+....     .+++.+.. .+.|.|||+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            577889998888887775433       5567776632     34444444 368999999998776655432       


Q ss_pred             ------------CCCEEEEEEeC---CCCEEEEEeCCeEEEEECCC-----CCCc------eeEEEeecCCCceEEEEEe
Q 004737          619 ------------KNQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH  672 (732)
Q Consensus       619 ------------~~~V~sla~sp---dg~~LasgsDg~I~IWDl~t-----~~~~------~~i~~~~~~~~~I~sl~fs  672 (732)
                                  ...+..++.+|   +++.|+...=...++|.+.+     ....      ..+..+-........++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                        12356666655   66677766622223333322     1110      1122222223456778999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCC----CeE--EEEccC-CCCeeEEEEeC--CCCEEEEE
Q 004737          673 PTFPSLLVIGCYETLELWNMTE----NKT--LTLSAH-DKLVSSLAAST--VNGMVASA  722 (732)
Q Consensus       673 pdg~~L~sgs~dg~I~IwDl~t----~~~--~~~~~h-~~~V~sla~sp--dg~~LaSg  722 (732)
                      ++|..+++--....|..|+..+    ...  +..... -..+.++.+.+  ++.+.+.+
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            9998777778888999999886    122  222222 35788999998  77655554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.65  E-value=9.3  Score=42.68  Aligned_cols=110  Identities=12%  Similarity=0.007  Sum_probs=66.6

Q ss_pred             cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe-----EEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737          577 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS  649 (732)
Q Consensus       577 ~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~-----~i~~l~~--h~~~V~sla~spdg~~LasgsDg~I~IWDl~t  649 (732)
                      ...+..+.+.+++..++++ ..|.+..- ...+.     ....+..  ....+.++.|.+++..+++|..|.+.+.. ..
T Consensus       280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~  356 (398)
T PLN00033        280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG  356 (398)
T ss_pred             ccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence            3557888898886666544 55665443 33332     1222221  22358899999999988888888666653 44


Q ss_pred             CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      ++..............++.+.|.++++ .++.+.+|.|.-|
T Consensus       357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~  396 (398)
T PLN00033        357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY  396 (398)
T ss_pred             CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence            433222222223345688899877765 6777778877655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.60  E-value=5.5  Score=47.83  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=49.4

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCC----------CCc--eeEEe--------ecCCcceEEEEEcCCC--CcE
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTEN----------PDY--SLRTF--------TGHSTTVMSLDFHPSK--EDL  550 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s----------~~~--~~~~l--------~~h~~~V~sl~fspdg--~~l  550 (732)
                      -.|..|.++++|++|+..+..|.+ |..+..          ++.  ..+++        ..+...|..+.|+|.+  +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            358889999999999998876644 333321          111  11221        1345678999999974  234


Q ss_pred             EEEEeCCCcEEEEECCCC
Q 004737          551 LCSCDNNSEIRYWSINNG  568 (732)
Q Consensus       551 laSgs~Dg~I~iWDl~t~  568 (732)
                      |+.-..|+++|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            445566999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.51  E-value=16  Score=44.68  Aligned_cols=165  Identities=12%  Similarity=0.095  Sum_probs=88.1

Q ss_pred             EEEEECCCCeeeeEEeccCC-----eeEEEEeCCCCE-E-EEEEc-----------CCeEEEEECCC-CeEEEEEc--CC
Q 004737          560 IRYWSINNGSCAGVFKCQSG-----ATQMRFQPRLGR-I-LAAAI-----------ENYISILDVET-QVCRLKLQ--GH  618 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~~~-----i~~v~~sp~g~~-l-l~~s~-----------dg~I~IwDl~t-~~~i~~l~--~h  618 (732)
                      |+++|..+++.+..+.....     +..+.|+..... + +++..           +|.++.|++-. ++.+.-+.  .-
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            55566655555554443222     445555554333 3 33322           34577776543 33222221  12


Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEECCCCe
Q 004737          619 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTENK  696 (732)
Q Consensus       619 ~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~--IwDl~t~~  696 (732)
                      .+.|.  +++|...++++|-...+++||+...+... ..++......|..+.+  .+..+++|.....|.  .|+-.++.
T Consensus       935 ~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lLR-k~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen  935 PGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLLR-KCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred             Cccce--EEeccCCEEEEecccEEEEeeCChHHHHh-hhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence            23443  55577778888888999999997653211 1112222344555554  455688888777554  45555566


Q ss_pred             EEEEcc--CCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          697 TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       697 ~~~~~~--h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      .+.+..  -...|+++.+- |...++.+..=|.+.+
T Consensus      1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred             EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence            665443  33457766654 4445666666666654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.36  E-value=0.12  Score=39.12  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=29.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  483 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~  483 (732)
                      ...|.+++|+|...+||.+..||.|.||.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            356999999999999999999999999998 443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.19  E-value=1.9  Score=47.51  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=84.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE----EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      ..++|.++.||+|.+.||+--.|++|.+++...-+.    ..+.+..+..|...+|+.+ .-+|..+..| +-+|-+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            345899999999999999999999999998743222    2333445566999999866 4566655444 778877766


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeee
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCA  571 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i  571 (732)
                      +..++..+.|...|.-..|+++..-++.+.+ ..+.+.=+-++++...
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~  190 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS  190 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence            6667778888899999999998655554444 3444444555554433

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.14  E-value=0.028  Score=65.70  Aligned_cols=163  Identities=10%  Similarity=0.105  Sum_probs=90.1

Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcC--CCeEE-----EEeccCCCceEEEEEcC---CCCeEEEEeCC
Q 004737          445 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD  513 (732)
Q Consensus       445 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~--t~~~~-----~~l~~h~~~V~~l~fsp---dg~~Lasgs~D  513 (732)
                      .+++..+.|-.+.|-. +...++  -.-|.+.|||++  .|+..     +........+.-|.|.|   +..++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            4567777888888854 222222  233678899876  34332     22223334455566655   66778888888


Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEE-----------cCCCCcEEEEEeCCCcEEEEECC-----CCeeeeEEecc
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF-----------HPSKEDLLCSCDNNSEIRYWSIN-----NGSCAGVFKCQ  577 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~f-----------spdg~~llaSgs~Dg~I~iWDl~-----t~~~i~~~~~~  577 (732)
                      ++|++.++++..  ...+.+|...+..++|           +||| ..++.+..||.+++|-+.     ...|+...+.+
T Consensus       205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph  281 (1283)
T KOG1916|consen  205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH  281 (1283)
T ss_pred             CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence            999998877543  2455667777666654           5665 344455557776666542     22344444433


Q ss_pred             CCeeEEEEeCCC---------C--EEEEEEc-CCeEEEEECCCCeEE
Q 004737          578 SGATQMRFQPRL---------G--RILAAAI-ENYISILDVETQVCR  612 (732)
Q Consensus       578 ~~i~~v~~sp~g---------~--~ll~~s~-dg~I~IwDl~t~~~i  612 (732)
                      .+-..+||..+.         .  ++++++. +..+++|.....+|.
T Consensus       282 d~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  282 DKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            322223332211         1  1233322 456777776666655

>PHA02790 Kelch-like protein; Provisional

Probab=94.07  E-value=1.5  Score=50.43  Aligned_cols=179  Identities=7%  Similarity=-0.019  Sum_probs=82.6

Q ss_pred             CCCEEEEEECC-----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC--CeEEEEecCCCCceeEEe
Q 004737          461 DGKLLATGGHD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       461 dg~~Lasgs~D-----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~s~~~~~~~l  531 (732)
                      ++.++++||.+     ..+..||..+.+-...  +.........+.  -++.+.+.|+.+  .++..||..++..  ...
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence            34556667654     2567788776543221  111111122222  366777777754  3578888765443  221


Q ss_pred             ecCCcce--EEEEEcCCCCcEEEEEeCCC---cEEEEECCCCeeeeEEeccCCee-EEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          532 TGHSTTV--MSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILD  605 (732)
Q Consensus       532 ~~h~~~V--~sl~fspdg~~llaSgs~Dg---~I~iWDl~t~~~i~~~~~~~~i~-~v~~sp~g~~ll~~s~dg~I~IwD  605 (732)
                      ..-..+.  .+++..  ++.+.+.|+.++   .+..||.++.+-...-....+.. ..+..-++..+++|   |.+.+||
T Consensus       347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~yd  421 (480)
T PHA02790        347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYC  421 (480)
T ss_pred             CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEec
Confidence            1111111  122222  246666776543   47788887765443222111111 11122333334444   4577888


Q ss_pred             CCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCC
Q 004737          606 VETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG  650 (732)
Q Consensus       606 l~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~  650 (732)
                      .++.+-..  .+....... +++. -++++.+.|+ +     ..|.+||..+.
T Consensus       422 p~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        422 ESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            87764332  222111122 2222 2555555555 3     24556665543

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=93.90  E-value=16  Score=42.97  Aligned_cols=122  Identities=16%  Similarity=0.135  Sum_probs=68.6

Q ss_pred             EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC-CCCCEEEEEEeCC------CCEEEEEe--CC-
Q 004737          573 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG-HKNQVHSVCWNTS------GEYLASVS--DE-  640 (732)
Q Consensus       573 ~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~-h~~~V~sla~spd------g~~Lasgs--Dg-  640 (732)
                      .++....+..+.|..++..+++...+|.|.+||...+.  .+..+.. +...+..=+|-++      ..++++.+  ++ 
T Consensus       125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~  204 (670)
T PF10395_consen  125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS  204 (670)
T ss_pred             EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence            44566889999999999999999999999999993321  1112221 2222221133222      23444433  22 


Q ss_pred             --eEEEEECCCCCCceeEEEee---cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          641 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       641 --~I~IWDl~t~~~~~~i~~~~---~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                        .++++.+....  ..+.++.   .+......+.|.- +|. |+.- .++.|.+|++...+..
T Consensus       205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~  264 (670)
T PF10395_consen  205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQ  264 (670)
T ss_pred             cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEE
Confidence              78888882211  2222322   2222233333332 454 3333 7779999999887655

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.89  E-value=1.6  Score=51.17  Aligned_cols=72  Identities=13%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEc--CCCCcEEEEEeCCCcEEEEEC
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCDNNSEIRYWSI  565 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs--pdg~~llaSgs~Dg~I~iWDl  565 (732)
                      ..+..+.-+.-++..++-+....+.|||...+...........+.|.+++|.  |++..++++| ....|.+|.-
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q  103 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQ  103 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEc
Confidence            3455555555455444444456899999998764444333557889999996  6776677555 4677877753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=93.75  E-value=3.2  Score=47.58  Aligned_cols=144  Identities=8%  Similarity=-0.009  Sum_probs=69.7

Q ss_pred             CcEEEEEeCC--CcEEEEECCCCeeeeEEeccCCeeE-EEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEE--EcCCC
Q 004737          548 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK  619 (732)
Q Consensus       548 ~~llaSgs~D--g~I~iWDl~t~~~i~~~~~~~~i~~-v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i~~--l~~h~  619 (732)
                      +.+.+.|+.+  ..+..||..+.+....-........ ....-++..+++|+.+   ..+..||.++..-...  +....
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            4666677643  4578888876544332222222111 2223345556666654   3577888877643321  11111


Q ss_pred             CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCC
Q 004737          620 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE  694 (732)
Q Consensus       620 ~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t  694 (732)
                      .. .+++ .-++++.+.|  |.+.+||..+.. ...+..+....... + +..-+++..++||.+     ..|.+||..+
T Consensus       399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~-~-~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNP-E-LIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cc-ceEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCcccc-E-EEEECCEEEEECCcCCCcccceEEEEECCC
Confidence            11 1222 2345555555  456788887642 12222222111112 2 223355666666643     3577888777


Q ss_pred             CeEE
Q 004737          695 NKTL  698 (732)
Q Consensus       695 ~~~~  698 (732)
                      ++..
T Consensus       472 ~~W~  475 (480)
T PHA02790        472 YSWN  475 (480)
T ss_pred             CeEE
Confidence            6654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.69  E-value=2.3  Score=49.75  Aligned_cols=122  Identities=11%  Similarity=0.114  Sum_probs=79.4

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEc--CCCCeEEEEeCCCeEEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVRV  518 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fs--pdg~~Lasgs~Dg~I~I  518 (732)
                      ....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |++..+++.+....|.+
T Consensus        21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence            334444445556666666656655555556789999999877554332 456789999995  58899999999999999


Q ss_pred             EecC-----CCC---ceeE--EeecCC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          519 WDTE-----NPD---YSLR--TFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       519 WDl~-----s~~---~~~~--~l~~h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                      |--.     +..   ..++  .+..|+ .+|.+..|.++|. +++.+  ++.+.|+|-.
T Consensus       101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence            8432     111   1122  223444 6799999999874 33233  4578888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.60  E-value=11  Score=40.62  Aligned_cols=101  Identities=12%  Similarity=0.065  Sum_probs=48.8

Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCeee---eEEe-ccCCe--eEEEEeCCCCEEEEEEc-----CCeEEEEECCCCeE
Q 004737          548 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQVC  611 (732)
Q Consensus       548 ~~llaSgs~D-----g~I~iWDl~t~~~i---~~~~-~~~~i--~~v~~sp~g~~ll~~s~-----dg~I~IwDl~t~~~  611 (732)
                      +.+++.|+.+     ..+..||+.+.+..   ..+. .....  .+++. -++..++.|+.     ...+.+||+.+.+-
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            4566666644     35677777665531   1111 11111  12222 23455555554     24688899887643


Q ss_pred             EE--EEcCCCCCEEEEEEeCCCCEEEEEe-CC----eEEEEECCCC
Q 004737          612 RL--KLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG  650 (732)
Q Consensus       612 i~--~l~~h~~~V~sla~spdg~~Lasgs-Dg----~I~IWDl~t~  650 (732)
                      ..  .+... ......+...++++++.|+ ++    .+.+||+.+.
T Consensus       152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            22  22211 1112222233556666665 43    3568888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.53  E-value=4.7  Score=40.69  Aligned_cols=103  Identities=16%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             CEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---C---eEEEE---ecC-CCCceeE-
Q 004737          463 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R---TVRVW---DTE-NPDYSLR-  529 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g---~I~IW---Dl~-s~~~~~~-  529 (732)
                      +.|+.+...+.|.+|++.  ..+...+|..- +.|..+.++..|+||+|--.+   .   .+|+|   +.. ....+++ 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455444566889999988  44556666543 789999999999999986432   2   56665   222 1111111 


Q ss_pred             Eeec---------------------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737          530 TFTG---------------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  568 (732)
Q Consensus       530 ~l~~---------------------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~  568 (732)
                      ...|                     -..++.+++.+|...++++++  ++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence            1112                     234678888888877888554  568899987543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.50  E-value=2.6  Score=39.28  Aligned_cols=118  Identities=11%  Similarity=0.062  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-------eeEEeecCCcceEEEEEcC----CCCcEEEEEeCCCcEEEEE
Q 004737          496 TDVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-------~~~~l~~h~~~V~sl~fsp----dg~~llaSgs~Dg~I~iWD  564 (732)
                      ..-+|......|++++.-|.|.|++......       .++.+ .....|++|+--+    ++..+|+.|+ ...|..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            3446666666788888999999998764321       12233 3456788886544    3456776776 56799999


Q ss_pred             CCCCeeeeEEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737          565 INNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL  615 (732)
Q Consensus       565 l~t~~~i~~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t~~~i~~l  615 (732)
                      +....-+..-+.+.++.++.+-.   ...-++..+.+..|.-||.+..+...+.
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            99887776666678888877643   2234666666777888887766655544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=93.48  E-value=14  Score=40.57  Aligned_cols=189  Identities=5%  Similarity=-0.055  Sum_probs=97.2

Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecC-CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC--CeeE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQ  582 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~--~i~~  582 (732)
                      .++++..||.|.-.|.+++.......... ...+.+-.+..+|+  ++.++.++.++.+|.++++.+.......  .+..
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            45555788888888888766322111111 12222223333543  4467778899999999999988888666  1112


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEE
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~  657 (732)
                      ..+. ....++..+.++.+...|..+++.+.......   ..+..--...++..++...  ++.+.-.|..++...-..+
T Consensus       148 ~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~  226 (370)
T COG1520         148 PPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK  226 (370)
T ss_pred             CcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence            2222 23445555578999999999888776644321   1111111112333333322  3355566665553211100


Q ss_pred             E-eecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          658 E-LSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       658 ~-~~~~~~------~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      . ......      .+..-...-++ .++.++.++.+...|..+++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~  273 (370)
T COG1520         227 VSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI  273 (370)
T ss_pred             eecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence            0 000000      01111111122 2466677777888888888877

>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]

Probab=93.48  E-value=0.13  Score=62.76  Aligned_cols=16  Identities=25%  Similarity=0.524  Sum_probs=8.7

Q ss_pred             CCCCCCcccccccccc
Q 004737           54 LPFQRDSLDDATIKPR   69 (732)
Q Consensus        54 ~~~~~~~~~~~~~~~~   69 (732)
                      .|..--++||.+..||
T Consensus      1952 ~~~sqg~~~~t~vhq~ 1967 (2220)
T KOG3598|consen 1952 PPMSQGSSDETKVHQR 1967 (2220)
T ss_pred             ccccccccCCCceeec
Confidence            3444456677666444

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.46  E-value=0.024  Score=62.39  Aligned_cols=149  Identities=12%  Similarity=0.123  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-E
Q 004737          495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V  573 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~  573 (732)
                      .....|-+.+.-++.++.+..+..||-....   ..-...++....++|..+++.+++.+...+.+.+||+.+...-. .
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            3455678877778888899899999866422   11122345677889998888888888889999999997543211 1


Q ss_pred             EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Q 004737          574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWS  646 (732)
Q Consensus       574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWD  646 (732)
                      +.....-.-+.|++....++.+...|.+.||...+.+.+...-.|...+++++|.+.+..+...+|..+.+-.
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~  186 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTT  186 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhh
Confidence            1111112236788888889999899999999998887766666699999999999988766655566544433

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.43  E-value=11  Score=40.47  Aligned_cols=107  Identities=7%  Similarity=-0.049  Sum_probs=53.3

Q ss_pred             CCCeEEEEeCC-----CeEEEEecCCCCce--eEEeecCCcce--EEEEEcCCCCcEEEEEeC-----CCcEEEEECCCC
Q 004737          503 SLSRLATSSAD-----RTVRVWDTENPDYS--LRTFTGHSTTV--MSLDFHPSKEDLLCSCDN-----NSEIRYWSINNG  568 (732)
Q Consensus       503 dg~~Lasgs~D-----g~I~IWDl~s~~~~--~~~l~~h~~~V--~sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~  568 (732)
                      ++.+++.|+.+     ..+..||+.+....  ...+..-..+.  .+++.. + ..+++.|+.     ...+..||+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~-~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D-GTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C-CEEEEEeCcCCCccCceEEEEcCCCC
Confidence            45666777654     35677777765431  12211111111  122222 2 456656653     235888898876


Q ss_pred             eeeeEEecc--CCeeEEEEeCCCCEEEEEEcCC----eEEEEECCCCeE
Q 004737          569 SCAGVFKCQ--SGATQMRFQPRLGRILAAAIEN----YISILDVETQVC  611 (732)
Q Consensus       569 ~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t~~~  611 (732)
                      +-...-...  ......+...++..++.|+.++    .+.+||.++.+-
T Consensus       150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            544322111  1222223334556666666553    356889887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=93.26  E-value=9.1  Score=43.78  Aligned_cols=149  Identities=4%  Similarity=-0.065  Sum_probs=73.4

Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCeeeeEEec---cCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 004737          548 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCR  612 (732)
Q Consensus       548 ~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~---~~~--i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i  612 (732)
                      ..+++.|+.+     ..+.+||+.+.+.......   ..+  -.+++ .-++..++.++.+     ..+..||+.+.+-.
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            4566666654     3588899887655432221   111  11222 2244555666543     34778888776433


Q ss_pred             EEEc-----CCCCCEEEEEEeCCCCEEEEEe-C----CeEEEEECCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEE
Q 004737          613 LKLQ-----GHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       613 ~~l~-----~h~~~V~sla~spdg~~Lasgs-D----g~I~IWDl~t~~~~~~i~~~~-~~~~~I~sl~fspdg~~L~sg  681 (732)
                      ..-.     ..... ..++. -++++++.++ +    ..+.+||+.+..- ..+.... .........+..-+++.++++
T Consensus       308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~G  384 (470)
T PLN02193        308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAVGKHIVIFG  384 (470)
T ss_pred             eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEECCEEEEEC
Confidence            2110     01111 12222 2556665555 4    3689999887521 1111110 011111122223355666666


Q ss_pred             EcC--------------CeEEEEECCCCeEEEE
Q 004737          682 GCY--------------ETLELWNMTENKTLTL  700 (732)
Q Consensus       682 s~d--------------g~I~IwDl~t~~~~~~  700 (732)
                      +..              ..+++||+.+.....+
T Consensus       385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             CccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence            642              2588999988876633

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.25  E-value=0.094  Score=61.52  Aligned_cols=125  Identities=18%  Similarity=0.247  Sum_probs=77.2

Q ss_pred             ecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEE-----------EcCCCCeEEEEe
Q 004737          446 IPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSS  511 (732)
Q Consensus       446 l~~H~~~V~~lafSp---dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~-----------fspdg~~Lasgs  511 (732)
                      ...-...+.-+.|+|   +.-++..+-.+++|++.++.+... ..+.+|..++++++           .+|||+.||+++
T Consensus       176 ~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~  254 (1283)
T KOG1916|consen  176 ITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI  254 (1283)
T ss_pred             cCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence            333334444555554   667888888889999887665332 44556777766654           478999999999


Q ss_pred             CCCeEEEEecCCCC----ceeEEeecCC-cceEEEEEcCCC-------C--cEEEEEeCCCcEEEEECCCCeee
Q 004737          512 ADRTVRVWDTENPD----YSLRTFTGHS-TTVMSLDFHPSK-------E--DLLCSCDNNSEIRYWSINNGSCA  571 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~----~~~~~l~~h~-~~V~sl~fspdg-------~--~llaSgs~Dg~I~iWDl~t~~~i  571 (732)
                      .||.++.|-+.-..    .++...+.|+ .+-.|.-|+...       .  .+|-+...+..+++|.....+|+
T Consensus       255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            99999988754211    1234455565 333333333221       1  22323345567999988777776

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.20  E-value=3.3  Score=41.42  Aligned_cols=173  Identities=13%  Similarity=0.102  Sum_probs=98.7

Q ss_pred             CCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe
Q 004737          503 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA  580 (732)
Q Consensus       503 dg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i  580 (732)
                      ++.++.+.+.  ...|++||+++++.....-.. ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+..++.-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence            4556665554  347999999987753332221 1122211112223445555667899999999999999988887776


Q ss_pred             eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737          581 TQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  654 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i----~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~  654 (732)
                      ..++..  +..++.+.....++.-|.++-...    .++.+ .-..++.+.|- +|.+.+-.- +..|...|..+++   
T Consensus       134 WgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr---  207 (262)
T COG3823         134 WGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR---  207 (262)
T ss_pred             eeeecC--CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc---
Confidence            666644  455777766677888787654332    22222 11223344443 455444444 5555555665552   


Q ss_pred             eEEEe------------ecCCCceEEEEEeCCCCEEEEEE
Q 004737          655 CIHEL------------SCTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       655 ~i~~~------------~~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      .+..+            ..+.+..+.+++.|+...++..+
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            22221            12344567889999885555544

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.18  E-value=1.2  Score=49.12  Aligned_cols=104  Identities=11%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-
Q 004737          618 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-  694 (732)
Q Consensus       618 h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t-  694 (732)
                      .+++|.+|.|++|.+.|++-- |.+|.++++-.... .....+-......|...+|+.. .-++.....| +.+|-+.. 
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            567999999999999999987 99999999843321 1122222333456889999887 4466666655 55554433 


Q ss_pred             -CeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          695 -NKTLTLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       695 -~~~~~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                       ........|...|.-..|+++.+.+.-++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeec
Confidence             22335557888899999999888555443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.97  E-value=6.8  Score=47.05  Aligned_cols=81  Identities=26%  Similarity=0.348  Sum_probs=56.9

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcC---------CCeEE---EEe--------ccCCCceEEEEEcCC---CCeE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTE---------SFTVK---STL--------EEHTQWITDVRFSPS---LSRL  507 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~---------t~~~~---~~l--------~~h~~~V~~l~fspd---g~~L  507 (732)
                      -.|..|.++++|++||..|..+.+.+.=..         .++..   +++        ..+...|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            358899999999999999887655443211         11111   111        134567999999995   5789


Q ss_pred             EEEeCCCeEEEEecCCCCceeEEe
Q 004737          508 ATSSADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      ++-..|+++|+||+.....+..++
T Consensus       165 ~vLtsdn~lR~y~~~~~~~p~~v~  188 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQHPWQVL  188 (717)
T ss_pred             EEEecCCEEEEEecCCCCCCeEEE
Confidence            999999999999998766544443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.90  E-value=3.2  Score=49.19  Aligned_cols=110  Identities=8%  Similarity=0.132  Sum_probs=69.4

Q ss_pred             eEEEEEcC-CCCcEEEEEeCCCcEEEEECCC-------C-------------eeeeEEeccCCeeEEEEe--CCCCEEEE
Q 004737          538 VMSLDFHP-SKEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILA  594 (732)
Q Consensus       538 V~sl~fsp-dg~~llaSgs~Dg~I~iWDl~t-------~-------------~~i~~~~~~~~i~~v~~s--p~g~~ll~  594 (732)
                      |+.|.... .+..+|+.|.+||.|.+|.++.       .             ++...+.....+..+++.  ...+.|++
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444332 2457888999999999996521       0             122344455668888888  66666666


Q ss_pred             EEcCCeEEEEECCCC--eE-EEEEcCCCCCEEEEEEeCCC-----C-EEEEEe-CCeEEEEEC
Q 004737          595 AAIENYISILDVETQ--VC-RLKLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI  647 (732)
Q Consensus       595 ~s~dg~I~IwDl~t~--~~-i~~l~~h~~~V~sla~spdg-----~-~Lasgs-Dg~I~IWDl  647 (732)
                      ++....|.||-....  +. ...-..+...|.+|+|-++.     . .|++++ .|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            666677777654431  11 11111266788999997753     2 666677 998888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.80  E-value=0.95  Score=54.88  Aligned_cols=142  Identities=11%  Similarity=0.022  Sum_probs=86.7

Q ss_pred             CCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEE-----EEEcC------CCCCEEEEEEeCCCCE--EEEEeCCeE
Q 004737          578 SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCR-----LKLQG------HKNQVHSVCWNTSGEY--LASVSDELV  642 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~t~~~i-----~~l~~------h~~~V~sla~spdg~~--LasgsDg~I  642 (732)
                      ..+..+.+.+|....++....  -.|+.||+++-...     .-+..      ......++.|.|.-..  +++-.|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            344555566665555554443  37889998753211     11111      2234567888886433  333338899


Q ss_pred             EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc----cCCCCeeEEEEeCCCCE
Q 004737          643 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGM  718 (732)
Q Consensus       643 ~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~----~h~~~V~sla~spdg~~  718 (732)
                      ++..+.-..  ..+.. -......++++|+|.|+.+++|-..|++.-|...-.....+.    .....|.+|+|-....+
T Consensus       181 ~V~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  181 RVKSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeE
Confidence            888775431  11111 123566899999999999999999999988865433222211    12468999999877766


Q ss_pred             EEEE
Q 004737          719 VASA  722 (732)
Q Consensus       719 LaSg  722 (732)
                      |++-
T Consensus       258 lvvy  261 (1405)
T KOG3630|consen  258 LVVY  261 (1405)
T ss_pred             EEEe
Confidence            6653

>PLN02153 epithiospecifier protein

Probab=92.80  E-value=17  Score=39.51  Aligned_cols=62  Identities=16%  Similarity=0.127  Sum_probs=33.1

Q ss_pred             CCCEEEEEECC-------CcEEEEEcCCCeEEEEeccC----CC---ceEEEEEcCCCCeEEEEeCC-----CeEEEEec
Q 004737          461 DGKLLATGGHD-------KKAVLWCTESFTVKSTLEEH----TQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDT  521 (732)
Q Consensus       461 dg~~Lasgs~D-------g~I~VWd~~t~~~~~~l~~h----~~---~V~~l~fspdg~~Lasgs~D-----g~I~IWDl  521 (732)
                      ++++++.|+.+       ..+.+||+.+.+-. .+...    ..   ....+.+  ++++++.|+.+     ..+.+||.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  108 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWS-IAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT  108 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEE-EcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence            45566666652       35788888775432 22111    00   1222333  45677777653     35778888


Q ss_pred             CCCC
Q 004737          522 ENPD  525 (732)
Q Consensus       522 ~s~~  525 (732)
                      .+..
T Consensus       109 ~t~~  112 (341)
T PLN02153        109 VKNE  112 (341)
T ss_pred             CCCE
Confidence            7654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.65  E-value=0.36  Score=36.51  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=28.5

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ...|.+++|+|..++||.++.||.|.||.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=92.47  E-value=8.8  Score=43.80  Aligned_cols=268  Identities=13%  Similarity=0.016  Sum_probs=130.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      ..+|..+.|...|. +.+|+.|| +..||..+++.+..-.... ..|..+.-+-.+ .|.+|+.+| |.+.+.+.....-
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence            34588888888884 45566554 6778888877765544333 556655555444 467777666 6666665422111


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEecc---CCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQ---SGATQMRFQPRLGRILAAAIENYISIL  604 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~Iw  604 (732)
                      ....-....|..+.-..+|..  ..|+..|..+ +......... ..+.+   +.+..+-.+.+ +.+.+++.++.+++-
T Consensus       240 ~~~~lp~~~I~ll~qD~qG~l--WiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~  315 (671)
T COG3292         240 WGPMLPSGNILLLVQDAQGEL--WIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL  315 (671)
T ss_pred             cCCCCcchheeeeecccCCCE--EEeeccccee-EecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence            111112334444444444432  2355455332 2333222211 11111   23444444444 445666666666554


Q ss_pred             ECCCCeEEEEEcCCCC-CEEEEEEeC---CCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          605 DVETQVCRLKLQGHKN-QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       605 Dl~t~~~i~~l~~h~~-~V~sla~sp---dg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      +.. ......+....+ .+-.++..|   +......-+-|.+.+-+-.++.....++..  .+..|+.+++..++. +..
T Consensus       316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g~-lWl  391 (671)
T COG3292         316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRGR-LWL  391 (671)
T ss_pred             cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCCc-EEE
Confidence            432 111111111111 111111112   111111111222333333333221222222  235567777777555 677


Q ss_pred             EEcCCeEEEEECCC-CeEEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          681 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       681 gs~dg~I~IwDl~t-~~~~~~~--~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      ++..+-+..|+-.+ +-.+...  ...++|..|.-.|+++ |..|+.+|.++.
T Consensus       392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence            77776677777766 3333221  2456788888889888 777888887763

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.43  E-value=19  Score=39.15  Aligned_cols=41  Identities=12%  Similarity=0.158  Sum_probs=22.4

Q ss_pred             eEEEEECCCCeEEEEccCCCC-eeEEEEeCCCCEEEEEECCC
Q 004737          686 TLELWNMTENKTLTLSAHDKL-VSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       686 ~I~IwDl~t~~~~~~~~h~~~-V~sla~spdg~~LaSgs~DG  726 (732)
                      .+.+||..+.+.......... -...+..-++++++.|+.+.
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence            467888877655432222111 12223345678888887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.41  E-value=17  Score=40.27  Aligned_cols=14  Identities=7%  Similarity=0.135  Sum_probs=9.9

Q ss_pred             cEEEEECCCCeeee
Q 004737          559 EIRYWSINNGSCAG  572 (732)
Q Consensus       559 ~I~iWDl~t~~~i~  572 (732)
                      .|.+||..+.+...
T Consensus       190 ~v~~YD~~t~~W~~  203 (376)
T PRK14131        190 EVLSYDPSTNQWKN  203 (376)
T ss_pred             eEEEEECCCCeeeE
Confidence            58889987765543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.35  E-value=3.2  Score=41.51  Aligned_cols=170  Identities=8%  Similarity=-0.020  Sum_probs=94.7

Q ss_pred             CcEEEEEeC--CCcEEEEECCCCeeeeEEeccC-CeeEEEEeCCCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCCCEE
Q 004737          548 EDLLCSCDN--NSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       548 ~~llaSgs~--Dg~I~iWDl~t~~~i~~~~~~~-~i~~v~~sp~g~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~~V~  623 (732)
                      ..++.+.+.  ...|++||+.+++.+...+... .+..--...-+..+.. .-.+|.-.+||.++.+++..+. ..+.=+
T Consensus        56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGW  134 (262)
T COG3823          56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGW  134 (262)
T ss_pred             CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcce
Confidence            356656553  4479999999998887666541 2221111222344443 4457888999999888777665 445556


Q ss_pred             EEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737          624 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT  699 (732)
Q Consensus       624 sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~  699 (732)
                      .++.  |++-|+.++ ..+++.-|.++......+... ..+.+   ++.+.|- +|..++-.-.+..|...|..+|+.+.
T Consensus       135 gLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~  210 (262)
T COG3823         135 GLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA  210 (262)
T ss_pred             eeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence            6664  444444444 557777777664322222111 11222   2333332 34434444444455556666666552


Q ss_pred             E-------------ccCCCCeeEEEEeCCCC-EEEEE
Q 004737          700 L-------------SAHDKLVSSLAASTVNG-MVASA  722 (732)
Q Consensus       700 ~-------------~~h~~~V~sla~spdg~-~LaSg  722 (732)
                      .             ..|.+..+.|++.|+.. +++||
T Consensus       211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            1             23556788999999884 55554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.30  E-value=4.1  Score=47.75  Aligned_cols=171  Identities=12%  Similarity=0.172  Sum_probs=86.4

Q ss_pred             CCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE---EcCCCCCEEEEEEeCCCC
Q 004737          557 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGE  632 (732)
Q Consensus       557 Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~---l~~h~~~V~sla~spdg~  632 (732)
                      .-.|+||++. |..+..+. .+..+..+.|+.+ ..+++...+|.+++|++-.......   +......|..+.|..+|-
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence            3457788876 44444333 3347888999877 7788999999999999864322211   122233455555555665


Q ss_pred             EEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEE-EeCCCCE--EEEEEcCCeEEEEECCCC--eEEEEccCCCCe
Q 004737          633 YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPS--LLVIGCYETLELWNMTEN--KTLTLSAHDKLV  707 (732)
Q Consensus       633 ~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~-fspdg~~--L~sgs~dg~I~IwDl~t~--~~~~~~~h~~~V  707 (732)
                      .+.+.++..+.+.++..... ..........-.-.|-. +.|....  ++-....-...++-.++.  ....+......+
T Consensus       141 avlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~  219 (829)
T KOG2280|consen  141 AVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV  219 (829)
T ss_pred             EEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence            55555555555555544211 01111111111111111 2221111  111110001112222221  122232334567


Q ss_pred             eEEEEeCCCCEEEEEECCCeEEE
Q 004737          708 SSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       708 ~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      ..+..||+.++|+--..+|.|.+
T Consensus       220 ~ki~VS~n~~~laLyt~~G~i~~  242 (829)
T KOG2280|consen  220 VKISVSPNRRFLALYTETGKIWV  242 (829)
T ss_pred             EEEEEcCCcceEEEEecCCcEEE
Confidence            78888888888888888887765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.29  E-value=1.8  Score=48.31  Aligned_cols=142  Identities=13%  Similarity=0.125  Sum_probs=90.7

Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCC-------EEEEEEcCCeEEEEECCCC-eEEEE--E
Q 004737          546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVETQ-VCRLK--L  615 (732)
Q Consensus       546 dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~-------~ll~~s~dg~I~IwDl~t~-~~i~~--l  615 (732)
                      +...++..+.....++-.|++.|+.+..+..+..+ -+.|.|...       .-++|-++..|.-.|.+-. ..+..  .
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            33344445556677888899999999999887777 677777532       2456666777777777643 22221  1


Q ss_pred             cC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          616 QG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       616 ~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      +.  ......|..- ...-||++++ .|-|++||--..   ..-..+.+.+..|..+..+.+|+++++.+. ..|.+.|+
T Consensus       557 KdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         557 KDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             hhcccccccccccc-ccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            11  1122223322 3455788888 889999996443   233345666788999999999997776554 46666665


Q ss_pred             C
Q 004737          693 T  693 (732)
Q Consensus       693 ~  693 (732)
                      .
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            3

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.97  E-value=37  Score=41.48  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=93.2

Q ss_pred             CCCCeEEEEEc---C----CCCEEEEEECCCcEEEEEcCC---------------CeEEEEecc---CCCceEEEEEcC-
Q 004737          449 STSKVESCHFS---P----DGKLLATGGHDKKAVLWCTES---------------FTVKSTLEE---HTQWITDVRFSP-  502 (732)
Q Consensus       449 H~~~V~~lafS---p----dg~~Lasgs~Dg~I~VWd~~t---------------~~~~~~l~~---h~~~V~~l~fsp-  502 (732)
                      -..+|..|+|.   .    ..++|++= ....+.|+...-               ...+..+..   ...+..+++|+| 
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            34567778887   2    12355543 445677766211               122333331   234678999998 


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCC----ceeEEeecCCc----------ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737          503 SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHST----------TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  568 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~----~~~~~l~~h~~----------~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~  568 (732)
                      +...||+....|...|||+....    ..+.....+.+          .-..|.|.++-+.+| .++ ...+.++|+++.
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~~  234 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFESN  234 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCCC
Confidence            56689999999999999992111    11111111122          234778887755565 444 567899999887


Q ss_pred             eeee---EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          569 SCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET  608 (732)
Q Consensus       569 ~~i~---~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t  608 (732)
                      ....   ..+....|..+.-++.....+..-....|..+|+..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            6533   222234577788777643333333457888888877

These proteins are found in fungi.

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=91.95  E-value=30  Score=40.49  Aligned_cols=200  Identities=14%  Similarity=0.081  Sum_probs=111.8

Q ss_pred             ceEEEEEcCCCCeEEEEeC-----CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC----cEEEEE
Q 004737          494 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS  564 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~-----Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg----~I~iWD  564 (732)
                      .+-.++.+||.+++|-+-.     .-++++-|+.++......+.   +....++|.+|+..++++-..++    .|..-.
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~  206 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR  206 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence            3556788899988886532     34789999998775333333   34678899999999998877655    233333


Q ss_pred             CCC--CeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEE
Q 004737          565 INN--GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA  635 (732)
Q Consensus       565 l~t--~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~La  635 (732)
                      +.+  ..-...+.....  ...+.-+....+|+....+   ..+++.+......  ........+--..+.  ..+.+++
T Consensus       207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~  284 (682)
T COG1770         207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY  284 (682)
T ss_pred             cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence            333  122222322222  3334444455666665533   5688888775432  222221112222222  2244444


Q ss_pred             EEe--CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEE
Q 004737          636 SVS--DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL  698 (732)
Q Consensus       636 sgs--Dg-~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~  698 (732)
                      .-+  +| ..+|+.............+..|...+.--.|+--..+|+....++   .|++++..++...
T Consensus       285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~  353 (682)
T COG1770         285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER  353 (682)
T ss_pred             EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence            333  55 566665443111133345556666666666666677777776655   7888888776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.91  E-value=17  Score=42.90  Aligned_cols=180  Identities=11%  Similarity=0.047  Sum_probs=86.2

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE--EeecCCcceEEEEEcCCCCc
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKED  549 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~--~l~~h~~~V~sl~fspdg~~  549 (732)
                      -.|+||++. |..+..+.-....+-.+.|+.+. .|++...||+++||++........  .+......|..+.|..+|  
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--  139 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--  139 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence            468888865 44443333233378889999765 566667999999999874332111  111122334444444343  


Q ss_pred             EEEEEeCCCcEEE-EECCCCeeeeEEec-c---CCeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCe-EEEEEcCCCC
Q 004737          550 LLCSCDNNSEIRY-WSINNGSCAGVFKC-Q---SGATQMRFQPRLG---RILAAAIENYISILDVETQV-CRLKLQGHKN  620 (732)
Q Consensus       550 llaSgs~Dg~I~i-WDl~t~~~i~~~~~-~---~~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~-~i~~l~~h~~  620 (732)
                      +++-. .+|.|.+ -+.... .++.+.. +   ....|-...+++.   .++-....-...++-.+... ....+.....
T Consensus       140 Vavlt-~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~  217 (829)
T KOG2280|consen  140 VAVLT-VSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS  217 (829)
T ss_pred             eEEEe-cCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence            22222 2344433 333321 1111111 0   1112222222211   11111100011112122111 1112222235


Q ss_pred             CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          621 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       621 ~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      .+..+..+|+.++|+--. +|.|.+-+....   +++.++.
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~  255 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFN  255 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccC
Confidence            678899999999999877 899988887665   4444444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.74  E-value=9  Score=38.70  Aligned_cols=140  Identities=19%  Similarity=0.224  Sum_probs=80.0

Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC--C---cEEEE---ECC--CCeee---
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCA---  571 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D--g---~I~iW---Dl~--t~~~i---  571 (732)
                      +.|+.+.....|.+|++.........-..--+.|..+.++..|++++..=.+.  .   .+|+|   +..  ....+   
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            44544466778999999954444443333457899999999986665332211  2   45664   221  11111   


Q ss_pred             ------------------e--EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------EEEEc----CCCC-
Q 004737          572 ------------------G--VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQ----GHKN-  620 (732)
Q Consensus       572 ------------------~--~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~------i~~l~----~h~~-  620 (732)
                                        .  .+.....+.+++..|-.+.|++|+. +.+.+|.+.....      +..+.    .|.. 
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~  187 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN  187 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence                              1  1112345677888887777777654 6777776654322      11111    1111 


Q ss_pred             -CEEEEEEeCCCCEEEEEeCCeEEEEEC
Q 004737          621 -QVHSVCWNTSGEYLASVSDELVRVWSI  647 (732)
Q Consensus       621 -~V~sla~spdg~~LasgsDg~I~IWDl  647 (732)
                       ....+++.  +.|++..++..++++.+
T Consensus       188 ~~p~~v~ic--~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  188 FKPTQVAIC--EGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             ceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence             23444543  56888888888888765

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=91.67  E-value=30  Score=39.87  Aligned_cols=226  Identities=13%  Similarity=0.128  Sum_probs=111.7

Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCce-eEEeecC-CcceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCeeeeEEec
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC  576 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~h-~~~V~sl~fspdg~~llaSgs~--Dg~I~iWDl~t~~~i~~~~~  576 (732)
                      ..++..++.+..+|.+....+...... .....+. .....++++..++..+++.|+.  |+.+..|....-+++..+..
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N  298 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN  298 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence            446778999999999998887753311 1222222 4566788887765345556654  55666666555666677777


Q ss_pred             cCCeeEEEEeCC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEcCC--CCCEEEEEEeC-CCCEEEEEe
Q 004737          577 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGH--KNQVHSVCWNT-SGEYLASVS  638 (732)
Q Consensus       577 ~~~i~~v~~sp~----g~------~ll~~s~---dg~I~IwDl~t~~~--i~~l~~h--~~~V~sla~sp-dg~~Lasgs  638 (732)
                      -+++..+++...    ..      .+++++.   +|.++++.---+-.  ......-  ...++.+.... ++.||+.+.
T Consensus       299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~  378 (504)
T PF10433_consen  299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF  378 (504)
T ss_dssp             --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred             cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence            788988888632    22      5666654   57888774321111  1111111  22344444322 256777777


Q ss_pred             CCeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeEEE
Q 004737          639 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLA  711 (732)
Q Consensus       639 Dg~I~IWDl~t~~~~~~i~~~-----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~sla  711 (732)
                      ...-+++.+........+.+.     ......+.+..+.  +..++=+... .|++.+....+.. .+. .....|.+.+
T Consensus       379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~  455 (504)
T PF10433_consen  379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS  455 (504)
T ss_dssp             SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred             CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence            666667766421111222111     1112223332332  3334444443 5888888777766 332 3444555555


Q ss_pred             EeCCCCEEEEEECCCeEEEe
Q 004737          712 ASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       712 ~spdg~~LaSgs~DG~I~IW  731 (732)
                      +.  +.+++.+-.++.+.++
T Consensus       456 ~~--~~~v~v~~~~~~~~~~  473 (504)
T PF10433_consen  456 IN--DPQVLVALSGGELVYF  473 (504)
T ss_dssp             ES--SSEEEEEE-TTEEEEE
T ss_pred             EC--CCEEEEEEeCCcEEEE
Confidence            43  3455555556666554

...

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=91.40  E-value=37  Score=40.36  Aligned_cols=149  Identities=17%  Similarity=0.185  Sum_probs=81.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCc--EEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe------CCCe--
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADRT--  515 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~--I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs------~Dg~--  515 (732)
                      ...+...+..+.|+|||.+++..+.++.  ..+|-+....   .+..+...|....|++++..++...      .|+.  
T Consensus        55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~  131 (620)
T COG1506          55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH  131 (620)
T ss_pred             ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence            4456677889999999999988774332  3344332221   3344556788889999988877621      1222  


Q ss_pred             -----EEEEecCCC-Cc----------eeEEeecCCcceEEEEEcCCCCcEEEEEeCC---C---cEEEEECCCCeeeeE
Q 004737          516 -----VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCAGV  573 (732)
Q Consensus       516 -----I~IWDl~s~-~~----------~~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g---~I~iWDl~t~~~i~~  573 (732)
                           +.+|....+ ..          ...........+....+++++..++.+...+   .   ...++...++.....
T Consensus       132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (620)
T COG1506         132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL  211 (620)
T ss_pred             eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEE
Confidence                 334433322 11          1112222344556666666544443332222   1   233333335555555


Q ss_pred             EeccCCeeEEEEeCCCCEEEEEEc
Q 004737          574 FKCQSGATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       574 ~~~~~~i~~v~~sp~g~~ll~~s~  597 (732)
                      ......+..+.|.++++.++..+.
T Consensus       212 ~~~~~~~~~~~~~~~gk~~~~~~~  235 (620)
T COG1506         212 TPGEGSISKLAFDADGKSIALLGT  235 (620)
T ss_pred             cCCCceeeeeeeCCCCCeeEEecc
Confidence            555556888888998886555443

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.95  E-value=20  Score=39.55  Aligned_cols=39  Identities=15%  Similarity=0.197  Sum_probs=19.8

Q ss_pred             EEEEECCCCeEEEEccC-CCCeeEEEEeCCCCEEEEEECC
Q 004737          687 LELWNMTENKTLTLSAH-DKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       687 I~IwDl~t~~~~~~~~h-~~~V~sla~spdg~~LaSgs~D  725 (732)
                      +.+||.++++......- ...-...+..-++++++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            56788887665422211 1111122334457777777753

>PLN02193 nitrile-specifier protein

Probab=90.93  E-value=34  Score=39.12  Aligned_cols=172  Identities=8%  Similarity=-0.032  Sum_probs=80.6

Q ss_pred             CcEEEEEeCC-------CcEEEEECCCCeeeeEEe---ccC--CeeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCe
Q 004737          548 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV  610 (732)
Q Consensus       548 ~~llaSgs~D-------g~I~iWDl~t~~~i~~~~---~~~--~i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~  610 (732)
                      +.+++.|+.+       ..+.+||+.+.+-...-.   ...  ........-++..++.++.+     +.+.+||+.+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            4566666642       247788887765432111   001  01111122234455566543     468899998765


Q ss_pred             EEEEEcC----CCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEe---ecCCCceEEEEEeCCCCE
Q 004737          611 CRLKLQG----HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       611 ~i~~l~~----h~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~---~~~~~~I~sl~fspdg~~  677 (732)
                      -...-..    ....-.+++. -++++++.|+ ++     .+.+||+.+..- ..+...   ...... ..++. -+++.
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~R~~-~~~~~-~~gki  331 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW-FHCSTPGDSFSIRGG-AGLEV-VQGKV  331 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE-EeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence            4321110    1111122222 2455555554 32     467788776421 111100   000111 12222 25666


Q ss_pred             EEEEEcC----CeEEEEECCCCeEEEEccC----CC-CeeEEEEeCCCCEEEEEEC
Q 004737          678 LLVIGCY----ETLELWNMTENKTLTLSAH----DK-LVSSLAASTVNGMVASASH  724 (732)
Q Consensus       678 L~sgs~d----g~I~IwDl~t~~~~~~~~h----~~-~V~sla~spdg~~LaSgs~  724 (732)
                      +++++.+    ..|.+||+.+.+...+...    .. ...+++ .-++++++.|+.
T Consensus       332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~  386 (470)
T PLN02193        332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGE  386 (470)
T ss_pred             EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCc
Confidence            6666654    4699999998876644321    11 112222 335667777775

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.90  E-value=4.7  Score=45.22  Aligned_cols=143  Identities=13%  Similarity=0.148  Sum_probs=91.8

Q ss_pred             CCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC-------CcEEEEEeCCCcEEEEECCC-CeeeeE
Q 004737          503 SLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-------EDLLCSCDNNSEIRYWSINN-GSCAGV  573 (732)
Q Consensus       503 dg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg-------~~llaSgs~Dg~I~iWDl~t-~~~i~~  573 (732)
                      |..+|+ .+.....++-.|++.++ .+..+.-|...  -+.|.|..       ..-| .|-.+..|.-.|.+- +..+..
T Consensus       478 dssli~~dg~~~~kLykmDIErGk-vveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGK-VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CcceEEecCCCcccceeeecccce-eeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence            444444 34445567777887766 46666666554  56676652       1233 343455666666543 322222


Q ss_pred             EeccCCeeEEEE----eCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCC
Q 004737          574 FKCQSGATQMRF----QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS  649 (732)
Q Consensus       574 ~~~~~~i~~v~~----sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t  649 (732)
                      .....-.+.-.|    ....+++++++..|.|++||.-..+....+.+-...|..|..+.+|++|++.+...+.+-|++-
T Consensus       554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i  633 (776)
T COG5167         554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI  633 (776)
T ss_pred             eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence            222222222222    2345899999999999999976655555666777889999999999999999999999998753

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=90.58  E-value=54  Score=40.89  Aligned_cols=168  Identities=13%  Similarity=0.100  Sum_probs=92.3

Q ss_pred             cEEEEECCCCeeeeEEec--cCCeeEEEEeC---------CCCEEEEEEc---------CCeEEEEECCC-----Ce---
Q 004737          559 EIRYWSINNGSCAGVFKC--QSGATQMRFQP---------RLGRILAAAI---------ENYISILDVET-----QV---  610 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~--~~~i~~v~~sp---------~g~~ll~~s~---------dg~I~IwDl~t-----~~---  610 (732)
                      .|.+.+..+++.+-.+..  ...+.++++..         ...++++|+.         -|.++|||+-.     ++   
T Consensus      1005 ~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t 1084 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFT 1084 (1366)
T ss_pred             eeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcc
Confidence            455555555555544332  23344444321         1245666654         47899998632     21   


Q ss_pred             --EEEE--EcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 004737          611 --CRLK--LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET  686 (732)
Q Consensus       611 --~i~~--l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~  686 (732)
                        .+..  .+.-+++|..+|=. +| +|+++..-+|.||++........+..   -.-+++.....--.++|+++.-...
T Consensus      1085 ~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~r~~~ligVaF---iD~~~yv~s~~~vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1085 KNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLDRDSELIGVAF---IDLPLYVHSMKVVKNLILAGDVMKS 1159 (1366)
T ss_pred             cceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEeccCCcceeeEE---eccceeEEehhhhhhheehhhhhhc
Confidence              1111  12356777776632 33 56666677899999954422222222   1233333344444566777777777


Q ss_pred             EEEEECCCC-eEEEEc---cCCCCeeEEEEeCCCC--EEEEEECCCeEEEe
Q 004737          687 LELWNMTEN-KTLTLS---AHDKLVSSLAASTVNG--MVASASHDKCVKIW  731 (732)
Q Consensus       687 I~IwDl~t~-~~~~~~---~h~~~V~sla~spdg~--~LaSgs~DG~I~IW  731 (732)
                      |.+.-..+. ..+.+.   ...-.+.++.|--+|.  ++++++.|++|++|
T Consensus      1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred             eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence            766655432 222222   2233577888877775  67788899999886

>PRK05560 DNA gyrase subunit A; Validated

Probab=90.57  E-value=42  Score=41.17  Aligned_cols=226  Identities=9%  Similarity=0.036  Sum_probs=110.6

Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCc--------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE---CCC--
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN--  567 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~--------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD---l~t--  567 (732)
                      -++...+++-+.+|.|+--.+.+...        ....+... +.+..+..+.....+++..+ .|.+....   +..  
T Consensus       495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs-~Grv~~l~v~~iP~~~  572 (805)
T PRK05560        495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTN-RGRVYRLKVYEIPEAS  572 (805)
T ss_pred             cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEec-CCeEEEEEhhhCcCCC
Confidence            44567888889999998876543210        01112222 34444444444455554444 56655554   332  


Q ss_pred             ----Ceee---eEEeccCCe-eEEEEe--CCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCC
Q 004737          568 ----GSCA---GVFKCQSGA-TQMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       568 ----~~~i---~~~~~~~~i-~~v~~s--p~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spd  630 (732)
                          |..+   ..+.....+ ..+.+.  ++...++..+.+|.++..++..       +.....+.. ...+..+.....
T Consensus       573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~  651 (805)
T PRK05560        573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDG  651 (805)
T ss_pred             cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCC
Confidence                2222   112222233 334444  2567899999999998876643       222333443 234444444334


Q ss_pred             C-CEEEEEeCCeEEEEECCCCC------CceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 004737          631 G-EYLASVSDELVRVWSIGSGS------KGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTEN-------  695 (732)
Q Consensus       631 g-~~LasgsDg~I~IWDl~t~~------~~~~i~~~~~~~~~I~sl-~fspdg~~L~sgs~dg~I~IwDl~t~-------  695 (732)
                      . .+++....|.+..+....-.      .+.....+. .+..|..+ .+.++..+++..+..|.++...+..-       
T Consensus       652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~  730 (805)
T PRK05560        652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLR-EGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG  730 (805)
T ss_pred             CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCC-CCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence            3 44444557766555543211      111222232 22334443 44444447888888898777764321       


Q ss_pred             e-EE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          696 K-TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       696 ~-~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      + ..  .+....+.+..+........++..+.+|.+..
T Consensus       731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr  768 (805)
T PRK05560        731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR  768 (805)
T ss_pred             CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence            1 11  22222334444333333344555666776543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.56  E-value=1.6  Score=44.58  Aligned_cols=66  Identities=12%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEEEEE-------c-------CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737          585 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  650 (732)
Q Consensus       585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l-------~-------~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~  650 (732)
                      +...+.++++.+.+|.+++||+.+++++..-       .       .....|..+.++.+|.-|++-++|..+.|+..-.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4456788999999999999999998765432       1       2456788899999999888888898999987653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.55  E-value=20  Score=43.82  Aligned_cols=153  Identities=12%  Similarity=0.042  Sum_probs=78.0

Q ss_pred             EEEEEcCCCeEEEEeccC----CCceEEEEEcCCCC--eEEEEeC-----------CCeEEEEecCCCCceeEEeecCCc
Q 004737          474 AVLWCTESFTVKSTLEEH----TQWITDVRFSPSLS--RLATSSA-----------DRTVRVWDTENPDYSLRTFTGHST  536 (732)
Q Consensus       474 I~VWd~~t~~~~~~l~~h----~~~V~~l~fspdg~--~Lasgs~-----------Dg~I~IWDl~s~~~~~~~l~~h~~  536 (732)
                      |+++|..+++.+..+...    .-.|..+.|+....  +++++..           +|.++.|++-.....+..+....-
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            677777777666555321    22456666765332  3333322           455777776544433333322222


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc---CCeeEEEEeCCCCEEEEEEcCCeEEE--EECCCCeE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISI--LDVETQVC  611 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~g~~ll~~s~dg~I~I--wDl~t~~~  611 (732)
                      +-.-.+.+|..+.+++.  ....+++||+...+.++..+..   ..|+.+.+.  +.++++|.....+..  |+.+....
T Consensus       935 ~~~v~Ai~~f~~~~Lag--vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen  935 PGPVGAICPFQGRVLAG--VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred             CccceEEeccCCEEEEe--cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeE
Confidence            22234556766666633  3578999999887776654432   234445443  356777766544433  44333333


Q ss_pred             EEEEc-CCCCCEEEEEEeCC
Q 004737          612 RLKLQ-GHKNQVHSVCWNTS  630 (732)
Q Consensus       612 i~~l~-~h~~~V~sla~spd  630 (732)
                      +.-.. .-..+|+++.+-..
T Consensus      1011 ~~fadD~~pR~Vt~~~~lD~ 1030 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLDY 1030 (1205)
T ss_pred             EEEeCCCccceeeEEEEecC
Confidence            22211 12345666555433

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=90.51  E-value=38  Score=39.01  Aligned_cols=247  Identities=11%  Similarity=0.104  Sum_probs=119.9

Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCCe---EEEEeccC-CCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEeec
Q 004737          459 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       459 Spdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h-~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      ..++..++.+..+|.+....+....   .+..+ +. ....+++++..++ .+|+.|+.-|.=.++.+......+.....
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence            4467788889999999888766433   12222 22 4556777776654 47777776554444444433332222233


Q ss_pred             CCcceEEEEEcCC---CC-------cEEEEEe--CCCcEEEEECCCC---eeeeEEeccC--CeeEEEEeC-CCCEEEEE
Q 004737          534 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQS--GATQMRFQP-RLGRILAA  595 (732)
Q Consensus       534 h~~~V~sl~fspd---g~-------~llaSgs--~Dg~I~iWDl~t~---~~i~~~~~~~--~i~~v~~sp-~g~~ll~~  595 (732)
                      .-++|..+++.+.   +.       .++++++  .+|.+++..-.-+   .........+  .+..+.... ++.+++++
T Consensus       298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S  377 (504)
T PF10433_consen  298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS  377 (504)
T ss_dssp             ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred             CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence            4578988888532   12       4554443  5678888743211   1222222222  122233222 13455555


Q ss_pred             EcCCeEEEEECC---CCeEEEEEc--C---CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeec-CCCce
Q 004737          596 AIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNKF  666 (732)
Q Consensus       596 s~dg~I~IwDl~---t~~~i~~l~--~---h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~-~~~~I  666 (732)
                      ..+ .-+++.+.   ....+..+.  +   ....+.+-.+ . +..++=.....|++.+....   .....+.. .+..|
T Consensus       378 ~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~-~-~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I  451 (504)
T PF10433_consen  378 FPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNV-G-DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII  451 (504)
T ss_dssp             ESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEE-T-TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred             cCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEc-C-CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence            544 44444442   333332221  1   1122322222 2 55565566667888887665   44444332 33444


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-----cCCCCeeEEEEeC
Q 004737          667 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST  714 (732)
Q Consensus       667 ~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-----~h~~~V~sla~sp  714 (732)
                      .++++.  +..++++..++.+.++.+...... ...     .....|.|+...|
T Consensus       452 ~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  452 VAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            444443  356788888888999988877765 211     2567888888776

...

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.26  E-value=8.4  Score=35.94  Aligned_cols=111  Identities=9%  Similarity=0.082  Sum_probs=71.6

Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCe--------EEEEEcCCCCCEEEEEEeC-----CCCEEEEEeCCeEEEEECCC
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS  649 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~--------~i~~l~~h~~~V~sla~sp-----dg~~LasgsDg~I~IWDl~t  649 (732)
                      -.|......|++++..|.|.|++.....        .+..+. -...|++|+-.+     +...|+.|+...|..||+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN   82 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence            3455555678888899999999876432        233333 456788886544     35688889999999999987


Q ss_pred             CCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fsp---dg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      ... ..   ++.-...++++.+-.   ...-++.++.+-.|.-||....+.+
T Consensus        83 N~d-~F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   83 NSD-LF---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             Cch-hh---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            532 11   122235566665532   2234666666777888887766654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.14  E-value=34  Score=37.84  Aligned_cols=181  Identities=13%  Similarity=0.180  Sum_probs=104.0

Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEe----CCCCE--EEEEEc-C---CeEEEEECC--CCeEEEEE
Q 004737          548 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ----PRLGR--ILAAAI-E---NYISILDVE--TQVCRLKL  615 (732)
Q Consensus       548 ~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~s----p~g~~--ll~~s~-d---g~I~IwDl~--t~~~i~~l  615 (732)
                      ..+++....++-+.+||+. |+.+..+.. +....+.+-    -.+..  |++++. +   ..|++|.+.  ++.. ..+
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~v  144 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TDV  144 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE-
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eEc
Confidence            3466677888899999998 555555542 444444332    13333  444443 2   468888664  4433 222


Q ss_pred             c-------CCCCCEEEEEEe--C-CCCEEEE-Ee-CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737          616 Q-------GHKNQVHSVCWN--T-SGEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       616 ~-------~h~~~V~sla~s--p-dg~~Las-gs-Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~  679 (732)
                      .       .....+..+|+-  + +|.+.+. .. +|.+..|.+.....    .+.++++.. ...+..|+......+|+
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence            2       122347778774  3 4554444 44 88888888753222    245666654 45899999999999999


Q ss_pred             EEEcCCeEEEEECCCC-----eEEEE-c--cCCCCeeEEEEeC--CC-CEEEEEE-CCCeEEEeC
Q 004737          680 VIGCYETLELWNMTEN-----KTLTL-S--AHDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK  732 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~-----~~~~~-~--~h~~~V~sla~sp--dg-~~LaSgs-~DG~I~IWD  732 (732)
                      ++-++.-|+-|+.+..     ..+.. .  .....|..|++-.  ++ .||+..+ .+++..|||
T Consensus       224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            9999999999988622     22222 1  2346788888743  33 3666555 466777775

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=89.97  E-value=11  Score=44.46  Aligned_cols=164  Identities=16%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEec-cCCCceEEEEEcC------CCCeEEEEeC-C---CeE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE-EHTQWITDVRFSP------SLSRLATSSA-D---RTV  516 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~-~h~~~V~~l~fsp------dg~~Lasgs~-D---g~I  516 (732)
                      .+.|..+.|..+++.+++...+|.|.+||.......  ..+. .+...|..-+|-+      ...++++.+. +   -.+
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            677999999999999999999999999999332221  1221 1222111113322      2345554444 2   256


Q ss_pred             EEEecCCCCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe-----eEEEEeCC
Q 004737          517 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-----TQMRFQPR  588 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i-----~~v~~sp~  588 (732)
                      +++.+......+..+.   -+........|+-..+.+..-  .+++|.+|++...+....+....-+     ..+.+.|-
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~  286 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP  286 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence            7777722222222221   222223333343332334333  5789999999888877776644221     12233332


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737          589 LGRILAAAIENYISILDVETQVCRLKL  615 (732)
Q Consensus       589 g~~ll~~s~dg~I~IwDl~t~~~i~~l  615 (732)
                      ...-+.-+.++.|++.|+.-...+..+
T Consensus       287 s~nRvLLs~~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  287 SPNRVLLSVNNKIYLLDLKFESILSEF  313 (670)
T ss_pred             CCCeEEEEcCCEEEEEeehhhhhhhhh
Confidence            222334456789999998765544443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.91  E-value=8.9  Score=47.89  Aligned_cols=229  Identities=13%  Similarity=0.090  Sum_probs=108.1

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      .....++|+|.-.++|.+..+|.|++|-...-+.......-. ..+..+.|-...........+..+.+|.......   
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---  112 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---  112 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence            346678999999999999999999999765444332221111 1222222222222233344455666665543221   


Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--eccCCeeEE-EEeCCCCEEEEEEcCCeEEEEEC
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQM-RFQPRLGRILAAAIENYISILDV  606 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~--~~~~~i~~v-~~sp~g~~ll~~s~dg~I~IwDl  606 (732)
                        ..+...+++....+-  ...+.+ ..+.+++||..-.......  ......... .+.+..-.+..--.+-.-.+|-+
T Consensus       113 --~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  187 (993)
T KOG1983|consen  113 --VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL  187 (993)
T ss_pred             --eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence              112233333333222  111344 7788888887532211100  000000000 00000000000000000011111


Q ss_pred             CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 004737          607 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET  686 (732)
Q Consensus       607 ~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~  686 (732)
                      ....  ..+..+..++.+..+.....++.....+.+-+|+....   .....+....     ..+..++..++++-.|+.
T Consensus       188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs  257 (993)
T KOG1983|consen  188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPNG-----QLESRDGSHFVSYHTDGS  257 (993)
T ss_pred             cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhccccc-----ccCccCCceEEEEEecCC
Confidence            1000  12222455666666665666666566677777765543   1111222111     122778888999999999


Q ss_pred             EEEEECCCCeE
Q 004737          687 LELWNMTENKT  697 (732)
Q Consensus       687 I~IwDl~t~~~  697 (732)
                      +.+||...++.
T Consensus       258 ~~fWd~s~g~~  268 (993)
T KOG1983|consen  258 YAFWDVSSGKL  268 (993)
T ss_pred             EEeeecCCCce
Confidence            99999988754

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.41  E-value=0.042  Score=60.59  Aligned_cols=141  Identities=16%  Similarity=0.270  Sum_probs=99.3

Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEE
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~  657 (732)
                      .....|.+.+..+++++.+..+..||-.... +..+. ..+....++|+.++..++...  .+.+.+||+.+......  
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL--  112 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL--  112 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH--
Confidence            4556788888889999999999999865432 22222 445667889998888776655  78999999987432111  


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      +..+ ...-.-+.|++.+..++.+...+.+.||+..+.+..... .|...+++++|.+.+ +.+.++.|.
T Consensus       113 E~gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~  180 (615)
T KOG2247|consen  113 ESGG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN  180 (615)
T ss_pred             hccC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence            1111 111122689999999999999999999999887776444 499999999998876 445555554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=89.39  E-value=7.1  Score=40.47  Aligned_cols=129  Identities=15%  Similarity=0.138  Sum_probs=75.7

Q ss_pred             EEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCC-ceeEEE--eecCCCceEEEEEeC
Q 004737          601 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSK-GECIHE--LSCTGNKFHSCVFHP  673 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~-~~~i~~--~~~~~~~I~sl~fsp  673 (732)
                      -.+||+.+++....-......+.+-.+.+||++|.+|+  +|  .+++|+...... ......  .-....+.-+...-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            45788888765432222233344446778999999988  44  688888654111 011111  112334555667788


Q ss_pred             CCCEEEEEEcCC-eEEEEECCC--CeEEEE--c------cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          674 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--S------AHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       674 dg~~L~sgs~dg-~I~IwDl~t--~~~~~~--~------~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      ||+.|++|+... +..+|.-..  .....+  .      .....--.+...|+|++++.+..+..|.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~  194 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY  194 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence            999999998886 556666432  112211  1      1122233566679999999888776554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=89.39  E-value=44  Score=38.01  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=38.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEec-----cCCCceEEEEEcCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL  504 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~-----~h~~~V~~l~fspdg  504 (732)
                      .-..-+.|+|.|||++|++--..|.|++++..++..  +..+.     ........|+|+|+-
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            344578899999998887765569999998665432  22121     124668999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.34  E-value=8  Score=45.92  Aligned_cols=110  Identities=12%  Similarity=0.073  Sum_probs=68.9

Q ss_pred             EEEEEEeC--CCCEEEEEe-CCeEEEEECCCC-----------C------CceeEEEeecCCCceEEEEEe--CCCCEEE
Q 004737          622 VHSVCWNT--SGEYLASVS-DELVRVWSIGSG-----------S------KGECIHELSCTGNKFHSCVFH--PTFPSLL  679 (732)
Q Consensus       622 V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~-----------~------~~~~i~~~~~~~~~I~sl~fs--pdg~~L~  679 (732)
                      |+.|....  +..+|+.|. ||.|.+|.+++-           .      ..++...+. .+...+.++++  ...++||
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence            45444433  345666666 999999976321           0      001122222 34578899998  7777777


Q ss_pred             EEEcCCeEEEEECCC--CeEE--EEccCCCCeeEEEEeCCC---C---EEEEEECCCeEEEeC
Q 004737          680 VIGCYETLELWNMTE--NKTL--TLSAHDKLVSSLAASTVN---G---MVASASHDKCVKIWK  732 (732)
Q Consensus       680 sgs~dg~I~IwDl~t--~~~~--~~~~h~~~V~sla~spdg---~---~LaSgs~DG~I~IWD  732 (732)
                      +++....|.||-...  .+..  ....|...|-+|+|-++.   .   +|++++-.|.+.+|+
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            777777776665433  2222  222467789999997754   2   788899999988875

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.22  E-value=22  Score=38.54  Aligned_cols=143  Identities=13%  Similarity=0.208  Sum_probs=87.0

Q ss_pred             CCeeEEEEeCCCCEEEEEEcCCe------EEEEECCCC----eEE-----EEEcCCCC--------CEEEEEEeCCCCEE
Q 004737          578 SGATQMRFQPRLGRILAAAIENY------ISILDVETQ----VCR-----LKLQGHKN--------QVHSVCWNTSGEYL  634 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s~dg~------I~IwDl~t~----~~i-----~~l~~h~~--------~V~sla~spdg~~L  634 (732)
                      ++...+.+.++++.+++.+.+|.      ++.+++...    ..+     ..+....+        ..-+|++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            56788889887788888888888      776665541    111     11111111        34478887788877


Q ss_pred             EEEe-C------CeEEEEECCCCCCceeE---EEe---------ecCCCceEEEEEeCCCCEEEEEEcCC-------e--
Q 004737          635 ASVS-D------ELVRVWSIGSGSKGECI---HEL---------SCTGNKFHSCVFHPTFPSLLVIGCYE-------T--  686 (732)
Q Consensus       635 asgs-D------g~I~IWDl~t~~~~~~i---~~~---------~~~~~~I~sl~fspdg~~L~sgs~dg-------~--  686 (732)
                      ++.- +      ..|+.++.. +.....+   ..+         ......+..++++|+|..|+++....       .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            7665 6      678888765 3221221   011         12345689999999999777765422       1  


Q ss_pred             -----EEE--EECCC-Ce---EEE--Ecc-----CCCCeeEEEEeCCCCEEEE
Q 004737          687 -----LEL--WNMTE-NK---TLT--LSA-----HDKLVSSLAASTVNGMVAS  721 (732)
Q Consensus       687 -----I~I--wDl~t-~~---~~~--~~~-----h~~~V~sla~spdg~~LaS  721 (732)
                           +++  ||..+ +.   ...  +..     ....|+.+.+-+++++|+.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                 444  55554 21   122  222     4578999999999987664

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.19  E-value=2.3  Score=43.42  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEEE--------Ec-------cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          670 VFHPTFPSLLVIGCYETLELWNMTENKTLT--------LS-------AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~~--------~~-------~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+...+.++++.+.+|.+++||+.+++.+.        +.       .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            355678889999999999999999988761        11       3556789999998887777655 57778775

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=88.80  E-value=39  Score=36.66  Aligned_cols=24  Identities=8%  Similarity=0.084  Sum_probs=15.5

Q ss_pred             CCCeEEEEeCC-----------CeEEEEecCCCCc
Q 004737          503 SLSRLATSSAD-----------RTVRVWDTENPDY  526 (732)
Q Consensus       503 dg~~Lasgs~D-----------g~I~IWDl~s~~~  526 (732)
                      ++++.+.|+.+           ..+..||..+...
T Consensus        63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W   97 (346)
T TIGR03547        63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW   97 (346)
T ss_pred             CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence            56777777653           2467788776543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.69  E-value=13  Score=41.78  Aligned_cols=28  Identities=11%  Similarity=0.368  Sum_probs=16.3

Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          666 FHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       666 I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      |..++..+..+.+++...++.|.+|++.
T Consensus       192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  192 IVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             eeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            5666666666666666666666666654

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=88.64  E-value=14  Score=41.50  Aligned_cols=30  Identities=23%  Similarity=0.534  Sum_probs=23.8

Q ss_pred             CCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737          620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t  649 (732)
                      ..|..++..+..+++++.. ++.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            4499999999889999988 88999999986

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.64  E-value=1.6  Score=32.26  Aligned_cols=31  Identities=35%  Similarity=0.535  Sum_probs=26.2

Q ss_pred             CCeEEEEEcCCC---CEEEEEECCCcEEEEEcCC
Q 004737          451 SKVESCHFSPDG---KLLATGGHDKKAVLWCTES  481 (732)
Q Consensus       451 ~~V~~lafSpdg---~~Lasgs~Dg~I~VWd~~t  481 (732)
                      +.|.+|.|||+.   .+|+.+-.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999844   5888888889999999984

It contains a characteristic DLL sequence motif.

>PRK05560 DNA gyrase subunit A; Validated

Probab=88.43  E-value=71  Score=39.23  Aligned_cols=255  Identities=11%  Similarity=0.054  Sum_probs=130.0

Q ss_pred             EEcCCCCEEEEEECCCcEEEEEcCCCeE---------EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec---CCC
Q 004737          457 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENP  524 (732)
Q Consensus       457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl---~s~  524 (732)
                      .+-++...+++-+.+|.|+--.......         ...+... +.+..+........|+..+..|.+....+   ...
T Consensus       493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~  571 (805)
T PRK05560        493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA  571 (805)
T ss_pred             hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence            4455677888889999988876554321         1112222 34444444445566666667776655543   322


Q ss_pred             C-----cee---EEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC-------eeeeEEeccCCeeEEEEeCC
Q 004737          525 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR  588 (732)
Q Consensus       525 ~-----~~~---~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWDl~t~-------~~i~~~~~~~~i~~v~~sp~  588 (732)
                      .     ..+   ..+.....-|.++.+... ....++..+.+|.++--++...       .....++....+..+.....
T Consensus       572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~  651 (805)
T PRK05560        572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG  651 (805)
T ss_pred             CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence            1     111   112222233444444421 2345667888999888776432       22222333334444445555


Q ss_pred             CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEE-EEeCCCCEEEEEe-CCeEEEEECCCCC------
Q 004737          589 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGS------  651 (732)
Q Consensus       589 g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sl-a~spdg~~Lasgs-Dg~I~IWDl~t~~------  651 (732)
                      ...+++.+..|.+..+.+..         |.....+.. ...|.++ .+.++..+++..+ .|.++...+..-.      
T Consensus       652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~  730 (805)
T PRK05560        652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG  730 (805)
T ss_pred             CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence            57788888888877776542         122223322 2344444 4444333555555 8888877654221      


Q ss_pred             CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCC
Q 004737          652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spd  715 (732)
                      .......+......+..+........+++.+.+|.+..++..+-..  .......|..+.+..+
T Consensus       731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~  792 (805)
T PRK05560        731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG  792 (805)
T ss_pred             CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC
Confidence            1112222222233444443333444577777888777777654221  1122344666666433

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.05  E-value=22  Score=40.26  Aligned_cols=194  Identities=16%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             EEEEECCCcEEEEEcCCCeEE-EEeccCCCc---------------------eEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          465 LATGGHDKKAVLWCTESFTVK-STLEEHTQW---------------------ITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~---------------------V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ++.+..| .+..||.+..-.. ..+++..+.                     |..|..++.|..++-++.+| |.|..+.
T Consensus        55 ~~~~~gD-~lf~Wd~~ds~Llv~~lR~~~~~~~~~a~~q~q~l~P~~~V~feV~~vl~s~~GS~VaL~G~~G-i~vMeLp  132 (741)
T KOG4460|consen   55 VVFGLGD-ELFLWDGEDSSLLVVRLRGPSGGGEEPALSQYQRLLPINPVLFEVYQVLLSPTGSHVALIGIKG-LMVMELP  132 (741)
T ss_pred             hhcccCC-EEEEEecCcceEEEEEeccCCCCcccccccccceeccCCcceEEEEEEEecCCCceEEEecCCe-eEEEEch


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC---CEEEEEEcCC
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIEN  599 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g---~~ll~~s~dg  599 (732)
                      ..--.-..+......|+|=.|.-+...+.-+..                      -.+..++|+|+.   ..++.-+.|+
T Consensus       133 ~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~----------------------ltl~Qa~WHP~S~~D~hL~iL~sdn  190 (741)
T KOG4460|consen  133 KRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTS----------------------LTLKQAAWHPSSILDPHLVLLTSDN  190 (741)
T ss_pred             hhcCccceecCCCceEEEEeecccceeeccCCc----------------------eeeeeccccCCccCCceEEEEecCc


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~  679 (732)
                      .|++||+...+.+....+..+.      ++...-|++-+|+.+.+-......  ..+.......+....+..++..  |+
T Consensus       191 viRiy~lS~~telylqpgepgR------S~tn~Si~sFGe~~~~~l~~~~a~--~~V~~~Esv~Nd~~~l~~S~kt--L~  260 (741)
T KOG4460|consen  191 VIRIYSLSEPTELYLQPGEPGR------SPTNVSILSFGEEESLVLNKGRAY--TAVLGEEAVANDFGPLAASPKT--LF  260 (741)
T ss_pred             EEEEEecCCcchhhccCCCcCC------CCccceeeccCCcceeeeccCccc--ccccCchhhccCccccccCccc--ee


Q ss_pred             EEEcCCeEEEEEC
Q 004737          680 VIGCYETLELWNM  692 (732)
Q Consensus       680 sgs~dg~I~IwDl  692 (732)
                      +..+.+.+.....
T Consensus       261 ~~nSs~k~E~iE~  273 (741)
T KOG4460|consen  261 GQNSSGKDEVVEY  273 (741)
T ss_pred             eecccccceeEec

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.92  E-value=4.5  Score=50.20  Aligned_cols=150  Identities=13%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe--------CCCC-EEEEEeCCeEEEEECCCCC
Q 004737          581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN--------TSGE-YLASVSDELVRVWSIGSGS  651 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s--------pdg~-~LasgsDg~I~IWDl~t~~  651 (732)
                      ..+-+.|.-++ +-.+.|+.+.+|+.+++.....+.+-...|..|..-        |.=+ +|+.+.--.|.++-+....
T Consensus        82 ~~mGiFpeI~R-aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~  160 (1311)
T KOG1900|consen   82 TDMGIFPEIGR-AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE  160 (1311)
T ss_pred             eeeccchhhcc-eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence            33444444222 344568999999999976666666655566555432        2222 3344444445555433221


Q ss_pred             C----ce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCC-------e--------------EEEEc-
Q 004737          652 K----GE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTEN-------K--------------TLTLS-  701 (732)
Q Consensus       652 ~----~~--~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t~-------~--------------~~~~~-  701 (732)
                      .    ..  ....+...+..|.++....+|+ ++.+|.||.|+=  |...++       +              ...+. 
T Consensus       161 ~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~  239 (1311)
T KOG1900|consen  161 FTGELSIFNTSFKISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG  239 (1311)
T ss_pred             ccCcccccccceeeecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence            1    01  1123334467788899788887 666666664432  222221       0              11233 


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          702 AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       702 ~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+..+|..+++....+++++-+..|+|.+||
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~  270 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYD  270 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEE
Confidence            5677999999998899999999999999996

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=87.84  E-value=67  Score=38.21  Aligned_cols=146  Identities=13%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             eccCCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEE-----eCCCc-
Q 004737          488 LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE-  559 (732)
Q Consensus       488 l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSg-----s~Dg~-  559 (732)
                      ...+...+..+.|+|++..++..+.++  ...+|-+....    .+..+...|....|++++..+++-.     ..++. 
T Consensus        55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~  130 (620)
T COG1506          55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD  130 (620)
T ss_pred             ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence            345667788999999999999887443  23444443221    2333455677788888876666511     11222 


Q ss_pred             ------EEEEECCCC-eeee--EE----------eccCCeeEEEEeCCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 004737          560 ------IRYWSINNG-SCAG--VF----------KCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL  613 (732)
Q Consensus       560 ------I~iWDl~t~-~~i~--~~----------~~~~~i~~v~~sp~g~~ll~~s~dg-------~I~IwDl~t~~~i~  613 (732)
                            +.+|....+ +...  .+          .....+....+.+++..++....+.       ...++...++ .+.
T Consensus       131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  209 (620)
T COG1506         131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNG-ELE  209 (620)
T ss_pred             eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCC-ceE
Confidence                  333433222 1111  11          1122344555555555555544332       1233333233 333


Q ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737          614 KLQGHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       614 ~l~~h~~~V~sla~spdg~~Lasgs  638 (732)
                      .+......+..+.|.++++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         210 SLTPGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             EEcCCCceeeeeeeCCCCCeeEEec
Confidence            4444556688899999998555544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.70  E-value=42  Score=35.80  Aligned_cols=194  Identities=9%  Similarity=0.079  Sum_probs=108.7

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEECC------CC-eeeeEEe------ccCCeeEEEEeCCCC------------E
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFK------CQSGATQMRFQPRLG------------R  591 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~------t~-~~i~~~~------~~~~i~~v~~sp~g~------------~  591 (732)
                      .-+.|+|+|.+ .+-++....+...+||..      .. ..+..+.      .....+.+.|+....            .
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            45789999986 444466667889999986      12 2222222      123456666664332            3


Q ss_pred             EEEEEcCCeEEEEECCCCeE-----EEEEc-CCCCCE-EEEEEeCC--CCEEEEEe--CCeEEEEECCCCCCceeEEEe-
Q 004737          592 ILAAAIENYISILDVETQVC-----RLKLQ-GHKNQV-HSVCWNTS--GEYLASVS--DELVRVWSIGSGSKGECIHEL-  659 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~-----i~~l~-~h~~~V-~sla~spd--g~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~-  659 (732)
                      ++.+++||+|.-|...-...     ...+. .....| ..+++...  +.+|+.+.  .++|.|||-.-.... .-..+ 
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~  181 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI  181 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence            68889999999998532211     12222 112333 45666543  67888877  889999985432110 00000 


Q ss_pred             ----ecCCCc-----------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc--cCCCCeeEEEEeC------CC
Q 004737          660 ----SCTGNK-----------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAAST------VN  716 (732)
Q Consensus       660 ----~~~~~~-----------I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~--~h~~~V~sla~sp------dg  716 (732)
                          .....+           |+-..-.++...=+.+..-|.|-+||+...-+.++.  +.-+..+.|+..|      .+
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg  261 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG  261 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence                000001           111111222322333445568999998665554442  4445678888765      34


Q ss_pred             CEEEEEECCCeEEEeC
Q 004737          717 GMVASASHDKCVKIWK  732 (732)
Q Consensus       717 ~~LaSgs~DG~I~IWD  732 (732)
                      .+|+----||+|.+||
T Consensus       262 ~lLVGNFGDG~InaFD  277 (336)
T TIGR03118       262 ALLVGNFGDGTINAYD  277 (336)
T ss_pred             CeEEeecCCceeEEec
Confidence            5666555799999987

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=87.69  E-value=12  Score=44.29  Aligned_cols=93  Identities=13%  Similarity=0.261  Sum_probs=55.4

Q ss_pred             eEEEEeCCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737          581 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK  652 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t---~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~  652 (732)
                      ..+.|-|.|..+++-..||     .|.++..+.   |+.-... +....+..++|+-....++.+..+.|++|-..+-  
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy--  326 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY--  326 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence            3488999999999887665     355554332   1111111 1234566778877777777666889999987654  


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCE
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                       .......-.-..+.-+.|+|....
T Consensus       327 -hWYLK~e~~ip~~s~vkwhpe~~n  350 (1243)
T COG5290         327 -HWYLKVERQIPGISYVKWHPEEKN  350 (1243)
T ss_pred             -EEEEEEeecCCCcceeeeccccCc
Confidence             222222222344566678776543

>TIGR01063 gyrA DNA gyrase, A subunit

Probab=87.22  E-value=83  Score=38.63  Aligned_cols=261  Identities=11%  Similarity=0.065  Sum_probs=133.3

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCCeE---------EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---C
Q 004737          456 CHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---N  523 (732)
Q Consensus       456 lafSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---s  523 (732)
                      -.+-++...+++-+.+|.|+-.+..+...         ...++. .+.+..+........|+..+.+|.+...+..   .
T Consensus       490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~  568 (800)
T TIGR01063       490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE  568 (800)
T ss_pred             hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence            34456667788888999988876654321         111222 2345454444555667767777766655432   2


Q ss_pred             CCc-----ee---EEeecCCcceEEEEEcC-CCCcEEEEEeCCCcEEEEECCCCee-------eeEEeccCCeeEEEEeC
Q 004737          524 PDY-----SL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKCQSGATQMRFQP  587 (732)
Q Consensus       524 ~~~-----~~---~~l~~h~~~V~sl~fsp-dg~~llaSgs~Dg~I~iWDl~t~~~-------i~~~~~~~~i~~v~~sp  587 (732)
                      ...     .+   ..+.....-|.++.+.. +....++..+.+|.++-.++.....       ...+.....+..+....
T Consensus       569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~  648 (800)
T TIGR01063       569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS  648 (800)
T ss_pred             CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence            110     11   11222222344444332 1234566778899999887654221       11222233444444445


Q ss_pred             CCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC------
Q 004737          588 RLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------  651 (732)
Q Consensus       588 ~g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~------  651 (732)
                      ....+++.+..|.+..+.+..         |.....+. ....|.++....+..+++..+ .|.++...+..-.      
T Consensus       649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~  727 (800)
T TIGR01063       649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG  727 (800)
T ss_pred             CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence            556788888888777765532         12222232 233455555444454555555 8888877654321      


Q ss_pred             CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737          652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS  721 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaS  721 (732)
                      .......+......+..+........++..+.+|.+..++..+-...  ..-...|..+.... +..++.
T Consensus       728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~--gR~a~GVk~i~L~~-~D~vv~  794 (800)
T TIGR01063       728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQ--GRNTQGVRLIRLDE-DDKLVS  794 (800)
T ss_pred             cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCcc--ccCCCCeeeeeeCC-CCEEEE
Confidence            11122222222344444444444455777788887777776542211  12233466666643 334443

This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.95  E-value=50  Score=35.79  Aligned_cols=143  Identities=14%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCe------EEEEecCCCC---ceeE-----EeecCCc--------ceEEEEEcCCCCcE
Q 004737          493 QWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSLR-----TFTGHST--------TVMSLDFHPSKEDL  550 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~------I~IWDl~s~~---~~~~-----~l~~h~~--------~V~sl~fspdg~~l  550 (732)
                      +.+..|.+.+++..+++.+.+|.      +..+++....   ..+.     .+..-.+        ...+|++.+++ .+
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~   98 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF   98 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence            45778888866666666777777      5555554310   0011     1111111        34578885554 56


Q ss_pred             EEEEeCC------CcEEEEECCCCeeeeEEe----------------ccCCeeEEEEeCCCCEEEEEEc-----CC----
Q 004737          551 LCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAI-----EN----  599 (732)
Q Consensus       551 laSgs~D------g~I~iWDl~t~~~i~~~~----------------~~~~i~~v~~sp~g~~ll~~s~-----dg----  599 (732)
                      +++.-.+      ..|+.++.. |+....+.                ...+...++++|++..|+++..     |+    
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            6566666      678888876 55544332                2345778999999997777654     22    


Q ss_pred             -------eEEEEECCC-C----eEEEEEcC-----CCCCEEEEEEeCCCCEEEEE
Q 004737          600 -------YISILDVET-Q----VCRLKLQG-----HKNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       600 -------~I~IwDl~t-~----~~i~~l~~-----h~~~V~sla~spdg~~Lasg  637 (732)
                             .|..||..+ +    ...+.+..     ....|..+.+.+++++|+.-
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE  232 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE  232 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence                   244566654 2    12233332     35678899999999977753

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=86.33  E-value=51  Score=40.20  Aligned_cols=179  Identities=9%  Similarity=0.021  Sum_probs=0.0

Q ss_pred             EEEEECCCcEEEEEc-CCCeEEEEe---------ccCCCceEEEEEcCCCCeEEEEeCC---CeEEEEecCCCCc-----
Q 004737          465 LATGGHDKKAVLWCT-ESFTVKSTL---------EEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-----  526 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~-~t~~~~~~l---------~~h~~~V~~l~fspdg~~Lasgs~D---g~I~IWDl~s~~~-----  526 (732)
                      +++....|.|++|-. .+++....-         ...--.--++++..+|..++.++.+   +.|++|.+.-...     
T Consensus        65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~  144 (753)
T PF11635_consen   65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ  144 (753)
T ss_pred             EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc


Q ss_pred             --e-----eEEeecCCc--------------------ceEEEEEcC------CCCcEEEEEeCCC----cEEEEECCCCe
Q 004737          527 --S-----LRTFTGHST--------------------TVMSLDFHP------SKEDLLCSCDNNS----EIRYWSINNGS  569 (732)
Q Consensus       527 --~-----~~~l~~h~~--------------------~V~sl~fsp------dg~~llaSgs~Dg----~I~iWDl~t~~  569 (732)
                        .     +.....+..                    .++.+.|-+      ....++++.+...    .|..|.+....
T Consensus       145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~  224 (753)
T PF11635_consen  145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ  224 (753)
T ss_pred             CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC


Q ss_pred             ---------------------------eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE----c--
Q 004737          570 ---------------------------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL----Q--  616 (732)
Q Consensus       570 ---------------------------~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l----~--  616 (732)
                                                 ....+..+..|.++....-+..++.+..||.|.++|..+.+.+...    .  
T Consensus       225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~  304 (753)
T PF11635_consen  225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP  304 (753)
T ss_pred             cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc


Q ss_pred             -------------CCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737          617 -------------GHKNQVHSVCWNTSGEYLASVS-DELVR  643 (732)
Q Consensus       617 -------------~h~~~V~sla~spdg~~Lasgs-Dg~I~  643 (732)
                                   .....+..++|||.+-.++.-. +|.+.
T Consensus       305 ~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  305 NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             cccccccccccccccCCCCceEEECcccceEEEEecCCCce

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	732
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-24
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-20
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-20
2h9l_A	329	Wdr5delta23 Length = 329		2e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-20
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-19
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-15
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-15
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-14
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		1e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-12
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-10
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-10
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		3e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-10
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-10
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-10
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		7e-10
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-10
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-08
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		8e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		9e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		3e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		8e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		8e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		9e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		2e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		3e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		3e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-04
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		6e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 140/290 (48%), Gaps = 10/290 (3%)
Query: 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 502
            Q +   +S V    FSPDG+ +A+   DK   LW      ++ TL  H+  +  V FSP
Sbjct: 50  LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 562
               +A++S D+TV++W+       L+T TGHS++V  + F P  + +  + D+ + ++ 
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 165
Query: 563 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 622
           W+ N      +    S    + F P    I +A+ +  + + +   Q+ +  L GH + V
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSV 224
Query: 623 HSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 681
             V ++  G+ +AS SD+  V++W+      G+ +  L+   +  +   F P   ++   
Sbjct: 225 RGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASA 280
Query: 682 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
              +T++LWN       TL+ H   V  +A S     +ASAS DK VK+W
Sbjct: 281 SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 149/316 (47%), Gaps = 17/316 (5%)
Query: 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 486
           ++GR +E  K     +F L    T  V S  FSP+G+ LA    DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 546
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 547 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 605
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 606 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 663
             +  C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +   
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 664 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 718
           N+ + C+   F  T    +V G  + L  +WN+ T+     L  H  +V S A      +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 719 VASAS--HDKCVKIWK 732
           +ASA+  +DK +K+WK
Sbjct: 297 IASAALENDKTIKLWK 312

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 47  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 225 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 280
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 129/299 (43%), Gaps = 30/299 (10%)
Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517
           F P   ++ +   D    +W  E+   + TL+ HT  + D+ F  S   LA+ SAD T++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577
           +WD +  +  +RT  GH   V S+   P+  D + S   +  I+ W +  G C   F   
Sbjct: 176 LWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Query: 578 SGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY-- 633
               +M  +P     L A+  N   + +  V T+ C+ +L+ H++ V  + W     Y  
Sbjct: 234 REWVRM-VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 634 -------------------LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674
                              L+   D+ +++W +   S G C+  L    N     +FH  
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSG 349
Query: 675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
              +L     +TL +W+    + + TL+AH+  V+SL        V + S D+ VK+W+
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 28  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 88  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 206 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 261
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 45  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 40  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 100 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 157
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 218 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 273
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 22  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 82  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 200 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 255
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 24  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 84  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 202 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 257
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 19  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 79  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 252
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 17/316 (5%)
Query: 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 486
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 546
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 547 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 605
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 606 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 663
             +  C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +   
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 664 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 718
           N+ + C+   F  T    +V G  + L  +WN+ T+     L  H  +V S A      +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 719 VASAS--HDKCVKIWK 732
           +ASA+  +DK +K++K
Sbjct: 297 IASAALENDKTIKLYK 312

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 204 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + +  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 17/316 (5%)
Query: 427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 486
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 546
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 547 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILD 605
           + +L+ S   +  +R W +  G C       S   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 606 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 663
             +  C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +   
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 664 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 718
           N+ + C+   F  T    +V G  + L  +WN+ T+     L  H  +V S A      +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 719 VASAS--HDKCVKIWK 732
           +ASA+  +DK +K++K
Sbjct: 297 IASAALENDKTIKLFK 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 16/293 (5%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 570 CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 627
           C       S   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 628 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 683
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 204 SPNGKYILAATLDNDLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 684 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 732
            + +  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 132/276 (47%), Gaps = 23/276 (8%)
Query: 462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVW 519
           G  + +G  D    +W   +     TL  HT   W + +R +  +S     S DRT++VW
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS----GSTDRTLKVW 184
Query: 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 579
           + E  +  + T  GH++TV  +  H   E  + S   ++ +R W I  G C  V      
Sbjct: 185 NAETGE-CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 580 ATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 638
           A + +++  R  R+++ A +  + + D ET+ C   LQGH N+V+S+     G ++ S S
Sbjct: 241 AVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGS 296
Query: 639 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 697
            D  +RVW + +G+   CIH L  TG++  +         L+      T+++W++   + 
Sbjct: 297 LDTSIRVWDVETGN---CIHTL--TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 698 L-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 731
           L TL   +K  S++     N   V ++S D  VK+W
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 143/314 (45%), Gaps = 44/314 (14%)
Query: 458 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 514
           ++P G LLA+ G D++  +W TE  S+  KS L E H + +  V +SP  + LA++S D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 515 TVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SC 570
           T  +W     D+  + T  GH   V S+ + PS  +LL +C  +  +  W ++      C
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 571 AGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCW 627
             V    +     + + P    + +A+ ++ + +   E    VC   L+GH++ V S+ +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 628 NTSGEYLASVSDE-LVRVW------------SIGSGSKGECIHELSCTGNKFHS-CVFHP 673
           + SG+ LAS SD+  VR+W              GS    +CI    CT + FHS  ++  
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHSRTIYDI 258
Query: 674 TFPSL---LVIGC-YETLELWNMTENK-----TLTLSAHDKLVSSLAASTVN------GM 718
            +  L   L   C  + + ++    N      T +L+AH     S   + V       G+
Sbjct: 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318
Query: 719 VASASHDKCVKIWK 732
           +AS S D  V  WK
Sbjct: 319 LASCSDDGEVAFWK 332

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 129/315 (40%), Gaps = 77/315 (24%)
Query: 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 506
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + + PS  +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566
           L + S DRTVR+WD       LRT                                    
Sbjct: 180 LVSGSGDRTVRIWD-------LRT------------------------------------ 196
Query: 567 NGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ-------GH 618
            G C+     + G T +   P  G+ +AA +++  + + D ET     +L        GH
Sbjct: 197 -GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 255
Query: 619 KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------GECIHELSCTGNK-FH 667
           K+ V+SV +   G+ + S S D  V++W++ + +          G C  E++  G+K F 
Sbjct: 256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC--EVTYIGHKDFV 313
Query: 668 SCVFHPTFPSLLVIGCYET-LELWNMTE-NKTLTLSAHDKLVSSLAASTVNG-------- 717
             V        ++ G  +  +  W+    N  L L  H   V S+A +  NG        
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA--NGSSLGPEYN 371
Query: 718 MVASASHDKCVKIWK 732
           + A+ S D   +IWK
Sbjct: 372 VFATGSGDCKARIWK 386

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 41/239 (17%)
Query: 525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ-- 582
           D  L     H++ V  + F    E L   C+  +++  + +++GS        S A +  
Sbjct: 54  DVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQV--YRVSDGSLVARLSDDSAANKDP 111
Query: 583 -----------------MRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHS 624
                            + F P  G+ LA   E+  I I D+E +   + LQGH+  ++S
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 625 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 683
           + +  SG+ L S S D  VR+W + +   G+C   LS   +   +    P     +  G 
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSIE-DGVTTVAVSPGDGKYIAAGS 226
Query: 684 YE-TLELWNM----------TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
            +  + +W+           +EN++ T   H   V S+  +     V S S D+ VK+W
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 407 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 466
           GS D  V  +   + AD            + F      +I    ++V+   +S DG  LA
Sbjct: 76  GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 467 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 522
           T   DK   +W T    E +   S L+EH+Q +  V + PS + LA+SS D TVR+W   
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 523 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 563
           + D+  +    GH  TV S DF  ++    LCS  ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 47/244 (19%)
Query: 500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDN 556
           F  S   LAT S DR +++   +  D++L      T H   + S+ + P    LL +   
Sbjct: 20  FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF 78
Query: 557 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 616
           +S +  W+            +  +    F+  L  I+                      +
Sbjct: 79  DSTVSIWA------------KEESADRTFEMDLLAII----------------------E 104
Query: 617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPT 674
           GH+N+V  V W+  G YLA+ S D+ V +W    SG + ECI  L          ++HP+
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
Query: 675 FPSLLVIGCY-ETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGM--VASASHDKCV 728
             +LL    Y +T+ +W   ++       L+ H+  V S       G+  + S S D  V
Sbjct: 165 -EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223
Query: 729 KIWK 732
           ++WK
Sbjct: 224 RVWK 227

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 3/184 (1%)
Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517
           FSPD + LATG H  K  ++  ES   + +L+   ++I  + +SP    LA+ + D  + 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ 577
           ++D       L T  GH+  + SL F P  + LL +  ++  I+ + + + + AG     
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 578 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 636
            S    + F P     ++++ +  + + DV T+ C      H++QV  V +N +G  + S
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307
Query: 637 VSDE 640
           V D+
Sbjct: 308 VGDD 311

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 20/235 (8%)
Query: 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 506
           P + +KV S   S D  LL+ G +  +    C+     +  LE H+ +++DV  S + + 
Sbjct: 25  PETATKVVST--SRDKTLLSWGPNPDRHSSECSYGLPDRR-LEGHSAFVSDVALSNNGNF 81
Query: 507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566
             ++S D ++R+W+ +N     + F GH+  V+S+ F P    ++    +N+ +R W++ 
Sbjct: 82  AVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVSGGRDNA-LRVWNV- 138
Query: 567 NGSCAGVFKCQSGA-----TQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQGHK 619
            G C  +     GA     + +RF P L    I++   +N + + D+ T      L+GH 
Sbjct: 139 KGEC--MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT 196
Query: 620 NQVHSVCWNTSGEYLASV-SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 673
           N V SV  +  G   AS   D + R+W +   +KGE + E++  G   +   F P
Sbjct: 197 NYVTSVTVSPDGSLCASSDKDGVARLWDL---TKGEALSEMA-AGAPINQICFSP 247

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 506
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 507 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 563
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 186 PIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 564 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 615
            +N G              + F P    + AA         +E  I + +++ +V     
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302
Query: 616 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 652
           +    Q  S+ W+  G+ L A  +D LVRVW +  G++
Sbjct: 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 49/303 (16%)
Query: 460 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 514
           PD  ++ +   DK  ++W      T     +  L  H+ +++DV  S       + S D 
Sbjct: 51  PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574
           T+R+WD      + R F GH+  V+S+ F      ++ S   +  I+ W+   G C    
Sbjct: 109 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 165
Query: 575 KCQS---GATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCW 627
           + +S     + +RF P      I++   +  + + ++    C+LK    GH   +++V  
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTV 223
Query: 628 NTSGEYLAS-VSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLV 680
           +  G   AS   D    +W +  G        G+ I+ L  + N++  C    T PS   
Sbjct: 224 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGPS--- 278
Query: 681 IGCYETLELWNMTENKTLTLSAHDKLVS-----------SLAASTVNGMVASASHDKCVK 729
                 +++W++ E K +      +++S           SLA S     + +   D  V+
Sbjct: 279 ------IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 730 IWK 732
           +W+
Sbjct: 332 VWQ 334

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 506
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 507 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 563
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 564 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 615
            +N G              + F P    + AA         +E  I + +++ +V     
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 616 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 652
           +    Q  S+ W+  G+ L A  +D LVRVW +  G++
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 49/303 (16%)
Query: 460 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 514
           PD  ++ +   DK  ++W      T     +  L  H+ +++DV  S       + S D 
Sbjct: 28  PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574
           T+R+WD      + R F GH+  V+S+ F      ++ S   +  I+ W+   G C    
Sbjct: 86  TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 142
Query: 575 KCQS---GATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCW 627
           + +S     + +RF P      I++   +  + + ++    C+LK    GH   +++V  
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTV 200
Query: 628 NTSGEYLAS-VSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLV 680
           +  G   AS   D    +W +  G        G+ I+ L  + N++  C    T PS   
Sbjct: 201 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGPS--- 255
Query: 681 IGCYETLELWNMTENKTLTLSAHDKLVS-----------SLAASTVNGMVASASHDKCVK 729
                 +++W++ E K +      +++S           SLA S     + +   D  V+
Sbjct: 256 ------IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 308
Query: 730 IWK 732
           +W+
Sbjct: 309 VWQ 311

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 42/253 (16%)
Query: 426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW-----CTE 480
           D+  R  ++  G T+  F       S+V S  FSPD + + + G +++  LW     C  
Sbjct: 97  DKTLRLWDLRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF 153
Query: 481 SFTVKSTLEEHTQWITDVRFSPSLS----------RLATSSADRTVRVWDTENPDYSLR- 529
           S   K   E H+ W++ VR+SP +             A+   D  ++VW+T   ++ +R 
Sbjct: 154 SSAEK---ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT---NFQIRY 207
Query: 530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPR 588
           TF  H + V  L   P+ +  + +   + ++  W I N +     F   S   Q+ F P+
Sbjct: 208 TFKAHESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPK 266
Query: 589 LGRILAAAIENYISILDVETQ----VCRL------KLQGHKN---QVHSVCWNTSGEYL- 634
           L + +A   +  + I ++ TQ    VC +      K +G K    Q  S+ WN  G+ L 
Sbjct: 267 L-QWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325
Query: 635 ASVSDELVRVWSI 647
           A  +D ++R +S 
Sbjct: 326 AGFTDGVIRTFSF 338

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 109/275 (39%), Gaps = 76/275 (27%)
Query: 485 KSTLEEHTQWITDVR--FSPSLSR----LATSSADRTVRVW----DTENPDYSL--RTFT 532
           +  LE H+ W+T +   FS   +     L + S D+TV +W    + +N  + +  +  T
Sbjct: 14  RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 592
           GH+  V          DL  S +N             C  +                   
Sbjct: 74  GHNHFV---------SDLALSQEN-------------CFAI------------------- 92
Query: 593 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGS 651
            +++ +  + + D+ T     +  GH+++V+SV ++    + L++ ++  +++W+I    
Sbjct: 93  -SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI---- 147
Query: 652 KGECIHELSCTGNKFHS----CVFH-----------PTFPSLLVIGCYETLELWNMTENK 696
            GEC  + S    + HS    CV +           P  P    +G    L++WN     
Sbjct: 148 LGEC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQI 205
Query: 697 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
             T  AH+  V+ L+ S     +A+   DK + IW
Sbjct: 206 RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 15/192 (7%)
Query: 461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 520
           D +++ TG  D    +W   +  + +TL  H + +  +RF+  +  + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 521 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-- 576
             +P D +L R   GH   V  +DF    +  + S   +  I+ W  N  +C  V     
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 577 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 635
            + G   ++++ RL  +++ + +N I + D+E   C   L+GH+  V  + ++     ++
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVS 351
Query: 636 SVSDELVRVWSI 647
              D  ++VW +
Sbjct: 352 GAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 591 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 650
           +I++   +N I I D  T  C+  L GH   V  + ++       S SD  VRVW + + 
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-SDSTVRVWDVNT- 202
Query: 651 SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKL 706
             GE ++ L       H C  V H  F + +++ C +  ++ +W+M     +TL     L
Sbjct: 203 --GEMLNTL------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL--RRVL 252
Query: 707 VSSLAASTV----NGMVASASHDKCVKIW 731
           V   AA  V    +  + SAS D+ +K+W
Sbjct: 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVW 281

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 113/254 (44%), Gaps = 21/254 (8%)
Query: 417 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 471
           L  D    + R+  S++ GK      FT  +   +    + V +C ++P G  +A GG D
Sbjct: 68  LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 472 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 525
            K  ++       E+   K  ++  HT +++   F+ S  ++ T+S D T  +WD E+  
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 526 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGAT 581
             L++F GH   V+ LD  PS+     +   CD  + +  W + +G C   F+  +S   
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 582 QMRFQPRLGRILAAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYL-ASVS 638
            +R+ P      + + +    + D+  + +V     +       SV ++ SG  L A  +
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 639 DELVRVWSIGSGSK 652
           D  + VW +  GS+
Sbjct: 305 DYTINVWDVLKGSR 318

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 542
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 543 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 598
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 645
           N + I    T     +L+GH ++V S+  +  G  +AS  +DE +R+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 28/288 (9%)
Query: 462 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 519
           G +LA    D    LW   S  +   L  E+  ++I+ V +    + LA  ++   V++W
Sbjct: 127 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 579
           D +     LR  T HS  V SL ++     +L S   +  I +  +            SG
Sbjct: 186 DVQQ-QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH--VATLSG 239
Query: 580 ATQ----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCW-NTS 630
            +Q    +R+ P    + +   +N +++      +   + LQ    H+  V +V W    
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 631 GEYLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--E 685
              LA+    SD  +R+W++ SG+   C+  +    ++  S ++ P +  L+    +   
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 355
Query: 686 TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
            L +W   T  K   L  H   V SL  S     VASA+ D+ +++W+
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 542
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 543 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 598
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 645
           N + I    T     +L+GH ++V S+  +  G  +AS  +DE +R+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 121/288 (42%), Gaps = 28/288 (9%)
Query: 462 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 519
           G +LA    D    LW   S  +   L  E+  ++I+ V +    + LA  ++   V++W
Sbjct: 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG 579
           D +     LR  T HS  V SL ++     +L S   +  I +  +            SG
Sbjct: 175 DVQQQK-RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH--VATLSG 228
Query: 580 ATQ----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCW-NTS 630
            +Q    +R+ P    + +   +N +++      +   + LQ    H+  V +V W    
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 631 GEYLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--E 685
              LA+    SD  +R+W++ SG+   C+  +    ++  S ++ P +  L+    +   
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQN 344
Query: 686 TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
            L +W   T  K   L  H   V SL  S     VASA+ D+ +++W+
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 40/287 (13%)
Query: 430 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 489
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 490 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 547
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 548 EDLLCSCDNNSEIRYWSINNGS--------------------CAGVFKCQSGATQMRFQP 587
           E LL SC  +  +R W + + +                       + KC S +       
Sbjct: 763 E-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----- 816
Query: 588 RLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLA--SVSDELVRV 644
             G  +  A +N + + D+ T     ++  GH + +   C  +  ++LA  ++S   V +
Sbjct: 817 --GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ-YCDFSPYDHLAVIALSQYCVEL 873
Query: 645 WSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690
           W+I S  K  +C   LS      H  +F P   S L     +T+ +W
Sbjct: 874 WNIDSRLKVADCRGHLSWV----HGVMFSPDGSSFLTASDDQTIRVW 916

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 33/293 (11%)
Query: 451  SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 510
            S ++ C FSP   L           LW  +S    +    H  W+  V FSP  S   T+
Sbjct: 848  STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 511  SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561
            S D+T+RVW+T    +N    L+      F  + T V+++D   +   L        +I 
Sbjct: 908  SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 964
Query: 562  YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 621
            Y      SC     C S        P L  +     +  I I+++          GHK  
Sbjct: 965  YLPEAQVSCC----CLS--------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1012
Query: 622  VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680
            V  + +   G+ L S S D +++VW+  +G        +    ++     F     S L+
Sbjct: 1013 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLL 1066
Query: 681  IGCYE-TLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
               ++ T+++WN+   +     + H   V S A S+     +S S DK  KIW
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 40/287 (13%)
Query: 430 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 489
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 490 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 547
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 548 EDLLCSCDNNSEIRYWSINNGS--------------------CAGVFKCQSGATQMRFQP 587
           E LL SC  +  +R W + + +                       + KC S +       
Sbjct: 756 E-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD----- 809
Query: 588 RLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLA--SVSDELVRV 644
             G  +  A +N + + D+ T     ++  GH + +   C  +  ++LA  ++S   V +
Sbjct: 810 --GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ-YCDFSPYDHLAVIALSQYCVEL 866
Query: 645 WSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 690
           W+I S  K  +C   LS      H  +F P   S L     +T+ +W
Sbjct: 867 WNIDSRLKVADCRGHLSWV----HGVMFSPDGSSFLTASDDQTIRVW 909

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 115/293 (39%), Gaps = 33/293 (11%)
Query: 451  SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 510
            S ++ C FSP   L           LW  +S    +    H  W+  V FSP  S   T+
Sbjct: 841  STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 511  SADRTVRVWDT----ENPDYSLR-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 561
            S D+T+RVW+T    +N    L+      F  + T V+++D   +   L        +I 
Sbjct: 901  SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVD---NIRGLQLIAGKTGQID 957
Query: 562  YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 621
            Y      SC     C S        P L  +     +  I I+++          GHK  
Sbjct: 958  YLPEAQVSCC----CLS--------PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA 1005
Query: 622  VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 680
            V  + +   G+ L S S D +++VW+  +G        +    ++     F     S L+
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------VFLQAHQETVKDFRLLQDSRLL 1059
Query: 681  IGCYE-TLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
               ++ T+++WN+   +     + H   V S A S+     +S S DK  KIW
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%)
Query: 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 542
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 543 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA--IE 598
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 645
           N + I    T     +L+GH ++V S+  +  G  +AS  +DE +R+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 21/293 (7%)
Query: 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 510
           +K+ + H+  D +LL +   D K ++W + +      +   + W+    ++PS + +A  
Sbjct: 67  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 126
Query: 511 SADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567
             D    +++ +  + ++R      GH+  +    F    + +  S D    +  W I  
Sbjct: 127 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDIET 184
Query: 568 GSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 626
           G     F   +G    +   P     ++ A +    + DV   +CR    GH++ ++++C
Sbjct: 185 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 244
Query: 627 WNTSGEYLASVSDEL-VRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS---LLVI 681
           +  +G   A+ SD+   R++ + +        EL    +    C +   +F     LL+ 
Sbjct: 245 FFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 682 GCYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  +KIW
Sbjct: 299 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 126/295 (42%), Gaps = 25/295 (8%)
Query: 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 508
           +K+ + H+  D +LL +   D K ++W  +S+T      +   + W+    ++PS + +A
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 509 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565
               D    +++ +  + ++R      GH+  +    F    + +  S D    +  W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 566 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 624
             G     F   +G    +   P     ++ A +    + DV   +CR    GH++ +++
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 625 VCWNTSGEYLASVSDEL-VRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS---LL 679
           +C+  +G   A+ SD+   R++ + +        EL    +    C +   +F     LL
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 680 VIGCYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           + G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  +KIW
Sbjct: 286 LAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 126/295 (42%), Gaps = 25/295 (8%)
Query: 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 508
           +K+ + H+  D +LL +   D K ++W  +S+T      +   + W+    ++PS + +A
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 509 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565
               D    +++ +  + ++R      GH+  +    F    + +  S D    +  W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 566 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 624
             G     F   +G    +   P     ++ A +    + DV   +CR    GH++ +++
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 625 VCWNTSGEYLASVSDEL-VRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS---LL 679
           +C+  +G   A+ SD+   R++ + +        EL    +    C +   +F     LL
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 680 VIGCYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           + G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  +KIW
Sbjct: 286 LAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 126/295 (42%), Gaps = 25/295 (8%)
Query: 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 508
           +K+ + H+  D +LL +   D K ++W  +S+T      +   + W+    ++PS + +A
Sbjct: 56  AKIYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 509 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565
               D    +++ +  + ++R      GH+  +    F    + +  S D    +  W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 566 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 624
             G     F   +G    +   P     ++ A +    + DV   +CR    GH++ +++
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 625 VCWNTSGEYLASVSDEL-VRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS---LL 679
           +C+  +G   A+ SD+   R++ + +        EL    +    C +   +F     LL
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 680 VIGCYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           + G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  +KIW
Sbjct: 286 LAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 126/295 (42%), Gaps = 25/295 (8%)
Query: 451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLA 508
           +K+ + H+  D +LL +   D K ++W  +S+T      +   + W+    ++PS + +A
Sbjct: 56  AKIYAMHWGTDSRLLLSASQDGKLIIW--DSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 509 TSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565
               D    +++ +  + ++R      GH+  +    F    + +  S D    +  W I
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL--WDI 171
Query: 566 NNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 624
             G     F   +G    +   P     ++ A +    + DV   +CR    GH++ +++
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 625 VCWNTSGEYLASVSDEL-VRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPS---LL 679
           +C+  +G   A+ SD+   R++ + +        EL    +    C +   +F     LL
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKSGRLL 285
Query: 680 VIGCYETLE--LWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           + G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  +KIW
Sbjct: 286 LAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 444 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 501
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 502 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 547
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 548 EDLLCSCDNNSEIRYWSI 565
             ++CS   ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 6/223 (2%)
Query: 429 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 488
           GR  E+    T  E + I  + + V +  F      +  G  D +  ++   +       
Sbjct: 35  GR-VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF 93
Query: 489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 548
           E H  +I  +   P+   + + S D TV++W+ EN     +TF GH   VM + F+P   
Sbjct: 94  EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 549 DLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISIL 604
               S   +  ++ WS+   +         + G   + + P   +  ++ A+ +  I I 
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 605 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646
           D +T+ C   L+GH + V    ++ +   + S S D  +++W+
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 585
           +TF+  S  V  +DFHP++  +L +   +  +  W  N  +   V   Q   T +R   F
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVEIW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 644
             R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 699
           W+  +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 700 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 731
            +  ++ V+ +    +     + +AS D  +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500
            E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +  
Sbjct: 46  VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560
            P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   +  +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 561 RYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ 616
           + WS+   +         + G   + + P   +  ++ A+ +  I I D +T+ C   L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646
           GH + V    ++ +   + S S D  +++W+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 585
           +TF+  S  V  +DFHP++  +L +   +  +  W  N  +   V   Q   T +R   F
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 644
             R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 699
           W+  +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 700 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 731
            +  ++ V+ +    +     + +AS D  +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500
            E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +  
Sbjct: 46  VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560
            P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   +  +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 561 RYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ 616
           + WS+   +         + G   + + P   +  ++ A+ +  I I D +T+ C   L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646
           GH + V    ++ +   + S S D  +++W+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 585
           +TF+  S  V  +DFHP++  +L +   +  +  W  N  +   V   Q   T +R   F
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 644
             R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 699
           W+  +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 700 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 731
            +  ++ V+ +    +     + +AS D  +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 5/211 (2%)
Query: 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 500
            E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +  
Sbjct: 46  VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560
            P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   +  +
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 561 RYWSINNGSCAGVFKC--QSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ 616
           + WS+   +         + G   + + P   +  ++ A+ +  I I D +T+ C   L+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWS 646
           GH + V    ++ +   + S S D  +++W+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR---F 585
           +TF+  S  V  +DFHP++  +L +   +  +  W  N  +   V   Q   T +R   F
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELW--NYETQVEVRSIQVTETPVRAGKF 63
Query: 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRV 644
             R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++
Sbjct: 64  IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLT 699
           W+  +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT
Sbjct: 124 WNWENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 700 LSAHDKLVSSLAASTV--NGMVASASHDKCVKIW 731
            +  ++ V+ +    +     + +AS D  +KIW
Sbjct: 181 -TGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 444 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 501
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 502 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 547
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 548 EDLLCSCDNNSEIRYW 563
             ++CS   ++  + W
Sbjct: 389 PWVICSVSEDNIXQIW 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 446 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 502
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 503 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 549
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 550 LLCSCDNNSEIRYWSI 565
           ++CS   ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 446 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 502
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 503 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 549
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 550 LLCSCDNNSEIRYWSI 565
           ++CS   ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 446 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 502
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 503 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 549
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 550 LLCSCDNNSEIRYWSI 565
           ++CS   ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 446 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 502
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 503 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 549
           + + LA+S  DR + VWD              + P   L    GH+  +    ++P++  
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 550 LLCSCDNNSEIRYWSI 565
           ++CS   ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 90/202 (44%), Gaps = 3/202 (1%)
Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 512
           VE    S DG+   +G  D +  LW   +         HT+ +  V FS    ++ ++S 
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 513 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGS 569
           DRT+++W+T     Y++     GH   V  + F P+  +  + S   +  ++ W+++N  
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 570 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629
                   +G          G + A+  ++ + +L    +  +L      + +H++C++ 
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 612
Query: 630 SGEYLASVSDELVRVWSIGSGS 651
           +  +L + ++  +++W + S S
Sbjct: 613 NRYWLCAATEHGIKIWDLESKS 634

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 548
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 549 DLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603
            +L SC  + ++  W   NG     +   V      + Q         +L A+ +  +S+
Sbjct: 70  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 604 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 647
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 648 GSGSK 652
            S ++
Sbjct: 190 NSDAQ 194

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 548
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 549 DLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603
            +L SC  + ++  W   NG     +   V      + Q         +L A+ +  +S+
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 604 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 647
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 648 GSGSK 652
            S ++
Sbjct: 188 NSDAQ 192

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 23/185 (12%)
Query: 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 548
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 549 DLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQ-MRFQPRLG--RILAAAIENYISI 603
            +L SC  + ++  W   NG  S   V    S +   +++ P      +L A+ +  +S+
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 604 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 647
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 648 GSGSK 652
            S ++
Sbjct: 188 NSDAQ 192

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 23/185 (12%)
Query: 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 548
           H + I D        R+AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 549 DLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 603
            +L SC  + ++  W   NG     +   V      + Q         +L A+ +  +S+
Sbjct: 68  TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 604 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 647
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 648 GSGSK 652
            S ++
Sbjct: 188 NSDAQ 192

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504
           ++   T ++ S  +  + K   +   D    +W  E+  +  TL+ HT  +  +R S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564
             L +++AD ++R WD    DYS R F+ H T + ++      +++L S   N +   ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 565 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 605
           + +G    A + K       + F+   G+ L AA+E    +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 116/279 (41%), Gaps = 47/279 (16%)
Query: 485 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 543
           ++TL  H T  IT ++F  +   + T + D+ +RV+D+ N  + L+  +GH   V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ---MRFQPRLGRILAAAIENY 600
             +   +L S   +  +R W I  G C  VF+  +   +   +     +  I+  + +N 
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 601 ISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN----TSGEY 633
           + +  +                       E       L+GH   V +V  +     SG Y
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288
Query: 634 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693
                D  + VW +   ++ +C++ LS   ++ +S ++       +      T+ +W++ 
Sbjct: 289 -----DNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 694 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
             + + TL  H  LV  L  S  +  + SA+ D  ++ W
Sbjct: 341 NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 480 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 532
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 591
           GHS  V            L S   +  +R W +  G     F   +S    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 644
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 703
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 704 DKLVS--------SLAASTVNGM 718
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 480 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 532
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 591
           GHS  V            L S   +  +R W +  G     F   +S    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 644
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 703
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 704 DKLVS--------SLAASTVNGM 718
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 480 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 532
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 591
           GHS  V            L S   +  +R W +  G     F   +S    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 644
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 703
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 704 DKLVS--------SLAASTVNGM 718
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 31/263 (11%)
Query: 480 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 532
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR 591
           GHS  V            L S   +  +R W +  G     F   +S    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 644
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 703
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 704 DKLVS--------SLAASTVNGM 718
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 504
           ++   T ++ S  +  + K   +   D    +W  E+  +  TL+ HT  +  +R S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564
             L +++AD ++R WD    DYS R F+ H T + ++      +++L S   N +   ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 565 INNGSC--AGVFKCQSGATQMRFQPRLGRILAAAIE----NYISILD 605
           + +G    A + K       + F+   G+ L AA+E    +++ ILD
Sbjct: 419 LRSGKLVHANILKDADQIWSVNFK---GKTLVAAVEKDGQSFLEILD 462

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 117/280 (41%), Gaps = 49/280 (17%)
Query: 485 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 543
           ++TL  H T  IT ++F  +   + T + D+ +RV+D+ N  + L+  +GH   V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ---MRFQPRLGRILAAAIENY 600
             +   +L S   +  +R W I  G C  VF+  +   +   +     +  I+  + +N 
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 601 ISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN----TSGEY 633
           + +  +                       E       L+GH   V +V  +     SG Y
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSY 288
Query: 634 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 693
                D  + VW +   ++ +C++ LS   ++ +S ++       +      T+ +W++ 
Sbjct: 289 -----DNTLIVWDV---AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL- 339
Query: 694 ENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           EN  L  TL  H  LV  L  S  +  + SA+ D  ++ W
Sbjct: 340 ENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 108/267 (40%), Gaps = 63/267 (23%)
Query: 480 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 532
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 592
           GHS  V         +D   + D            G+ A                     
Sbjct: 63  GHSHIV---------QDCTLTAD------------GAYA--------------------- 80
Query: 593 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 651
           L+A+ +  + + DV T     +  GHK+ V SV  +     + S S D+ ++VW+I    
Sbjct: 81  LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTI---- 136
Query: 652 KGECIHELSCTGNKFHSCVFHPTFPS------LLVIGCYETLELWNMTENKT-LTLSAHD 704
           KG+C+  L    +        P   +      ++  G  + ++ WN+ + +       H+
Sbjct: 137 KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHN 196
Query: 705 KLVSSLAASTVNGMVASASHDKCVKIW 731
             +++L AS    ++ASA  D  + +W
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIXLW 223

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 109/261 (41%), Gaps = 31/261 (11%)
Query: 482 FTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFTGH 534
             ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F GH
Sbjct: 1   LVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 58
Query: 535 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL 593
           S  V            L S   +  +R W +  G     F   +S    +    +   I+
Sbjct: 59  SHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 594 AAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRVWS 646
           + + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ W+
Sbjct: 118 SGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 647 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK 705
           +   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA D+
Sbjct: 177 L---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
Query: 706 LVS--------SLAASTVNGM 718
           + S         LAA+T  G+
Sbjct: 234 VFSLAFSPNRYWLAAATATGI 254

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 20/295 (6%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSP 502
           T  V S  ++PDG L A+ G D   VL+     T     E+       H+  +  + +SP
Sbjct: 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP 249
Query: 503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 562
             +++A++SAD+T+++W+            G       L    +K+ L+ S   N  I +
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV-SISANGFINF 308
Query: 563 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQGHKN 620
            +   GS   V    + A         G+ L +A  E +I+  D+ T +  R+    H  
Sbjct: 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368
Query: 621 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--- 677
            +  +   + G+      D+ ++V   G    G  +       NK  S        +   
Sbjct: 369 MITGIKTTSKGDLFTVSWDDHLKVVPAG----GSGVDSSKAVANKLSSQPLGLAVSADGD 424
Query: 678 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
           + V  CY+ + +++  +   + +S +    S +A S     VA    D  V ++K
Sbjct: 425 IAVAACYKHIAIYSHGKLTEVPISYNS---SCVALSNDKQFVAVGGQDSKVHVYK 476

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 549
           EH   ++ V    S ++  + S D  ++VWD       L ++  H+  V  +   P K+ 
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 550 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGA---TQMRFQPRLGRILAAAIEN-YISILD 605
           +  SC  ++ I  W       A    C +     T + + P+   +     EN  +S++D
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 606 VETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVSDE 640
            ++  C L    H   V  + ++  S  +LAS+S++
Sbjct: 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED 279

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 22/168 (13%)
Query: 488 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 547
           L  H + +T V+++     L + S D +  VW + N +  L T  GH+ T+ S+D     
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-RLGTLDGHTGTIWSIDVDCFT 86
Query: 548 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY------I 601
           +  +    + S I+ W ++NG C   +K      ++ F P  G    A ++N       I
Sbjct: 87  KYCVTGSADYS-IKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSI 144
Query: 602 SILDVETQVCRLKL-QGHKNQVHSVC------------WNTSGEYLAS 636
           +I ++E      +L +  +  +H +             W+T G+Y+ +
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA 192

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWC----TESFTVKSTLEEHTQWITDVRFSP 502
           PA+  +    + + + +   TGG D    +W      +++ ++STLE H+ W+ DV +SP
Sbjct: 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214
Query: 503 SL---SRLATSSADRTVRVWDTEN 523
           ++   S  A+ S DRT  +W  +N
Sbjct: 215 TVLLRSYXASVSQDRTCIIWTQDN 238

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 59/307 (19%), Positives = 122/307 (39%), Gaps = 26/307 (8%)
Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           + KV S  ++P+   + +   D + ++W   +      ++ H  W+ +  F+P+   +A 
Sbjct: 66  SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 510 SSADRTVRVWDTE---NPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 563
              D    +++     + D ++   R  TGH     S  + P +E  L +   +     W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 564 SINNGSCAGVFKCQ--SGATQMRFQPRLGRI-----LAAAIENYISILDVE-TQVCRLKL 615
            +  G    +F  +  SG T       +  +     ++ + +  + + D+  T       
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 616 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECI--------HELSCTGNKF 666
            GH+  ++SV +   G+   + SD+   R++ + +G + +          +EL    +  
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305
Query: 667 HSCVFHPTFPSLLVIGCY--ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 724
            S      F       CY  +TL L  M  N     ++H+  +S L  S+    + + S 
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTL-LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364
Query: 725 DKCVKIW 731
           DK +KIW
Sbjct: 365 DKNLKIW 371

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/176 (19%), Positives = 70/176 (39%), Gaps = 18/176 (10%)
Query: 534 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL 593
           H  +V ++ ++P    +  S   +  ++ W  N    A VF  +         P   +  
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 594 AAAIENY---ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV--SDELVRVWSI- 647
             A+      + + D+++  C   LQGH+ ++ +V W+   +Y+ +   +D  V++W + 
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 648 -----------GSGSKGECIHELSCTGN-KFHSCVFHPTFPSLLVIGCYETLELWN 691
                       +G K + +   +   N K +   F      LL +G    + LWN
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	732
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.89
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.62
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.58
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.48
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.46
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.45
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.45
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.42
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.42
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.41
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.39
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.38
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.31
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.24
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.23
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.23
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.22
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.21
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.18
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.16
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.11
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.07
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.02
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.01
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.96
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.91
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.89
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.87
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.84
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.8
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.76
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.74
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.73
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.72
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.7
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.69
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.67
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.62
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.55
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.53
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.53
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.52
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.5
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.5
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.39
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.39
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.38
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.38
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.37
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.37
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.28
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.27
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.2
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.12
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.11
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.05
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.03
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.02
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.0
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.98
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.96
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.93
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.88
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.86
3ott_A	758	Two-component system sensor histidine kinase; beta	97.85
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.82
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.81
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.79
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.77
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.74
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.72
3ott_A	758	Two-component system sensor histidine kinase; beta	97.7
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.68
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.65
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.61
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.57
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.51
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.42
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.4
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.38
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.23
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.18
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.17
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.13
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.09
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.89
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.76
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.74
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.71
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.61
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.47
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.41
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.34
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.28
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.18
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.06
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.92
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.77
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.76
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.13
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	95.08
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.94
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.75
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.69
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	94.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.54
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.46
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.01
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.96
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	93.18
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	92.13
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	91.18
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	91.12
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	90.86
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	90.7
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	89.8
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	89.58
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	89.47
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	88.69
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	85.85
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	83.62
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	82.96
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	82.85
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	82.46
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	80.37

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-42  Score=375.26  Aligned_cols=288  Identities=19%  Similarity=0.364  Sum_probs=263.6

Q ss_pred             eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +.....+.+|.+.|++++|+||+++|++|+.|++|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEE
Q 004737          520 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       520 Dl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~  595 (732)
                      |+.+..   .....+.+|...|.++.|++++  .+++++.|+.|++||+++++++..+.. ...+.+++|+|++..++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            998754   2356788999999999999875  366889999999999999999888874 4579999999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CCCceEEEEEe
Q 004737          596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFH  672 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~--~~~~I~sl~fs  672 (732)
                      +.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||+++.   ..+..+..  +...|.+++|+
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s  279 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEEC
Confidence            9999999999999999999999999999999999999999999 999999999886   45555443  23479999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          673 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       673 pdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus       280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999988877 7789999999999999999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-43  Score=389.88  Aligned_cols=285  Identities=26%  Similarity=0.482  Sum_probs=267.0

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ...+.+|.+.|++++|+|++.+|++|+.|++|+|||+.+++....+.+|.+.|++++|+|++++|++|+.|++|+|||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      +.. .+..+.+|...|.+++|+|++ .++++|+.|+.|++||++++.++..+..+ ..+.++.|++++..+++++.|+.|
T Consensus       181 ~~~-~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          181 GFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             SSC-EEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCc-eeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            765 578889999999999999996 45669999999999999999999888754 458999999999999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCC--------------------CCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spd--------------------g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      ++||++++++...+.+|...|.+++|+|+                    +.+|++++ |+.|++||++++   .++..+.
T Consensus       259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~  335 (410)
T 1vyh_C          259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV  335 (410)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred             EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEE
Confidence            99999999999999999999999999996                    67899999 999999999987   7888999


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus       336 ~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            99999999999999999999999999999999988766 7779999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=8e-42  Score=366.32  Aligned_cols=285  Identities=18%  Similarity=0.330  Sum_probs=261.0

Q ss_pred             EEEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737          443 FQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTV  516 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I  516 (732)
                      +..+.+|.+.|++|+|+++    +.+|++|+.|++|+|||+.+.+.  ...+.+|...|.+++|++++.++++++.|++|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            4567899999999999985    67999999999999999987654  45688999999999999999999999999999


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEE
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAA  595 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~  595 (732)
                      ++||+.+++ .+..+..|...+.+++|+|++ .+|++++.|+.|++||+++++....+..+ ..+.+++|+|++.+|+++
T Consensus       105 ~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          105 RLWDLENGK-QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEETTTTE-EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCC-EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            999999876 477788899999999999997 46668999999999999999888777654 458999999999999999


Q ss_pred             EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      +.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|++||+++.   .++..+..|...|.+++|+|+
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTT
T ss_pred             cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECCC
Confidence            9999999999999999999999999999999999999999999 999999999887   677888899999999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.+|++++.|+.|++||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            999999999999999999999888 7779999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.9e-41  Score=365.78  Aligned_cols=288  Identities=17%  Similarity=0.279  Sum_probs=260.3

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      .....+.+|.+.|+|++|+||+++||+|+.|++|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-----ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeC--CCCEE
Q 004737          521 TENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGRI  592 (732)
Q Consensus       521 l~s~~-----~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp--~g~~l  592 (732)
                      +....     .....+.+|...|.+++|+|++. .|++++.|++|++||+++++++..+.. ...+.+++|+|  ++..|
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            86432     23467788999999999999964 556899999999999999999988875 45688999987  46899


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC--CCceEEE
Q 004737          593 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHSC  669 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl  669 (732)
                      ++++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |++|++||++..   ..+..+..+  ...+.++
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~  290 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASSV  290 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeEE
Confidence            9999999999999999999999999999999999999999999999 999999999876   444444432  3478999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||.|+||+
T Consensus       291 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999988877 7779999999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.7e-42  Score=377.00  Aligned_cols=289  Identities=17%  Similarity=0.337  Sum_probs=259.1

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ....++.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|||
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------ccCCeeEEEEeC-
Q 004737          521 TENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQP-  587 (732)
Q Consensus       521 l~s~~------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------~~~~i~~v~~sp-  587 (732)
                      +.+..      .....+.+|.+.|.++.|.|++...|++|+.|+.|++||+.+++++..+.      +...+.+++|++ 
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  216 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL  216 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence            87532      12456789999999999999877788899999999999999999887763      345689999977 


Q ss_pred             CCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC--
Q 004737          588 RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--  663 (732)
Q Consensus       588 ~g~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~--  663 (732)
                      ++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|++||++++   .++..+..+.  
T Consensus       217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~  293 (380)
T 3iz6_a          217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDR  293 (380)
T ss_dssp             SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCCSS
T ss_pred             CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccccc
Confidence            77899999999999999998 4577888999999999999999999999999 999999999987   5555554332  


Q ss_pred             -----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          664 -----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       664 -----~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                           ..|.+++|+|++.+|++++.|+.|++||+..++.+ .+    .+|.+.|++++|+|++.+|++|+.||.|+||+
T Consensus       294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence                 24889999999999999999999999999988876 44    57999999999999999999999999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.8e-40  Score=349.67  Aligned_cols=283  Identities=18%  Similarity=0.316  Sum_probs=253.5

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      ..+++.+|.+.|++++|+|++++|++++.||+|+|||+++++.+..+..|...|.+++|+|++++|++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe-ccCCeeEEEEeC-CCCEEEEEEcC
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAIE  598 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~-~~~~i~~v~~sp-~g~~ll~~s~d  598 (732)
                      .++. .+..+.+|...|.+++|+|++ .++++|+.|+.|++||++++ .+...+. +...|.+++|+| ++..+++++.|
T Consensus        85 ~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           85 NTGE-KVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             TTCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             CCCc-EEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            9876 578889999999999999996 56679999999999999877 4445554 445699999999 56889999999


Q ss_pred             CeEEEEECCCCeEEEEEc-CCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          599 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~-~h~~~V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      +.|++||+++......+. +|...|..++|+|  ++.+|++++ |++|++||++++   .++..+..|...|.+++|+|+
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~  239 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT  239 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCC
Confidence            999999998876655554 4668899999987  678999999 999999999987   888999999999999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC--EEEEEECCCeEE
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK  729 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~--~LaSgs~DG~I~  729 (732)
                      +.+|++++.|+.|++||+.+++.+ .+..|...+++++|+|++.  +|++|+.||.+.
T Consensus       240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            999999999999999999999888 7778999999999999885  688888777543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.1e-39  Score=348.86  Aligned_cols=288  Identities=19%  Similarity=0.335  Sum_probs=250.6

Q ss_pred             ceeEEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCC-----CeEEEEeccCCCceEEEEEcCCCCeEEEEe
Q 004737          438 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSS  511 (732)
Q Consensus       438 ~~~~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs  511 (732)
                      ..+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++..     +..+..+.+|...|.+++|+|++++|++|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            4456677899999999999999965 8999999999999999863     345678899999999999999999999999


Q ss_pred             CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC---
Q 004737          512 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR---  588 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~---  588 (732)
                      .|++|+|||+.+++ .+..+.+|...|.+++|+|++ .++++++.|+.|++||++.........+...+.++.|.|.   
T Consensus        85 ~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           85 WDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC---
T ss_pred             CCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCC
Confidence            99999999999876 578899999999999999986 5667999999999999985443333345567999999985   


Q ss_pred             ---CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004737          589 ---LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN  664 (732)
Q Consensus       589 ---g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~  664 (732)
                         +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++ |+.|++||+.+.   .++..+.. ..
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~~  238 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-QD  238 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-CS
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-CC
Confidence               44799999999999999999999999999999999999999999999999 999999999987   66666664 46


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE--------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|.+++|+|++.++++++. +.+++|++.....+ .+        ..|...|.+++|+|++++|++|+.||.|+|||
T Consensus       239 ~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          239 EVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             CEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            8999999999998877665 56999999887765 22        23567899999999999999999999999996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.6e-40  Score=360.31  Aligned_cols=282  Identities=28%  Similarity=0.455  Sum_probs=251.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC------------------ceEEEEEcCCCCeEEE
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT  509 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------------------~V~~l~fspdg~~Las  509 (732)
                      +|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|..                  .|++++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999976 78999999999998888765532                  4999999999999999


Q ss_pred             EeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeC-C
Q 004737          510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R  588 (732)
Q Consensus       510 gs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp-~  588 (732)
                      |+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.....+.+++|+| +
T Consensus       141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence            9999999999999865 5778899999999999999975 56699999999999999999999998888999999999 8


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEEEEE-------cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC--------
Q 004737          589 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------  652 (732)
Q Consensus       589 g~~ll~~s~dg~I~IwDl~t~~~i~~l-------~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~--------  652 (732)
                      +.++++++.|+.|++||++++..+..+       .+|...|.+++|+|++.+|++++ |+.|++||+++...        
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            899999999999999999999887766       57899999999999999999999 99999999976421        


Q ss_pred             -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeC------CCCEEEEEEC
Q 004737          653 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH  724 (732)
Q Consensus       653 -~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~sp------dg~~LaSgs~  724 (732)
                       ..+...+.+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++      ++.+|++|+.
T Consensus       299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~  378 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG  378 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence             2456677889999999999999999999999999999999999887 7779999999999986      6789999999


Q ss_pred             CCeEEEeC
Q 004737          725 DKCVKIWK  732 (732)
Q Consensus       725 DG~I~IWD  732 (732)
                      ||.|+|||
T Consensus       379 Dg~i~iW~  386 (393)
T 1erj_A          379 DCKARIWK  386 (393)
T ss_dssp             TSEEEEEE
T ss_pred             CCcEEECc
Confidence            99999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-39  Score=352.83  Aligned_cols=292  Identities=25%  Similarity=0.450  Sum_probs=249.5

Q ss_pred             eEEEEEecCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE---EeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737          440 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT  515 (732)
Q Consensus       440 ~~~v~~l~~H~~-~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~---~l~~h~~~V~~l~fspdg~~Lasgs~Dg~  515 (732)
                      +..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||++++....   ...+|...|.+++|+|++++|++|+.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            456778999998 99999999999999999999999999998876432   23689999999999999999999999999


Q ss_pred             EEEEecCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEe-ccCCeeEEEEeCCCC
Q 004737          516 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK-CQSGATQMRFQPRLG  590 (732)
Q Consensus       516 I~IWDl~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---~i~~~~-~~~~i~~v~~sp~g~  590 (732)
                      |+|||+..... .+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+..+.   ++..+. +...+.+++|+|++.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            99999987653 467889999999999999996 567799999999999998764   334443 345699999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC------------cee
Q 004737          591 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC  655 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~------------~~~  655 (732)
                      +|++++.|+.|++||++++.  +...+.+|...|.+++|+|++++|++++ |++|+|||......            ..+
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            99999999999999998875  5578889999999999999999999999 99999999743221            133


Q ss_pred             EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------EE--EEccCCCCeeEEEEeCCC-CEEEEEE
Q 004737          656 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS  723 (732)
Q Consensus       656 i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--------~~--~~~~h~~~V~sla~spdg-~~LaSgs  723 (732)
                      +..+.. |...|.+++|+|++..|++++.|+.|++|+.....        ..  ...+|...|++++|+|++ .+||+|+
T Consensus       244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred             eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence            444444 77889999999999999999999999999987542        11  234899999999999998 4999999


Q ss_pred             CCCeEEEeC
Q 004737          724 HDKCVKIWK  732 (732)
Q Consensus       724 ~DG~I~IWD  732 (732)
                      .||.|+|||
T Consensus       324 ~Dg~v~~W~  332 (345)
T 3fm0_A          324 DDGEVAFWK  332 (345)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.6e-39  Score=340.10  Aligned_cols=288  Identities=24%  Similarity=0.458  Sum_probs=258.5

Q ss_pred             eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +....++.+|.+.|++++|+|++++|++|+.|+.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      |+.++. .+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|
T Consensus        93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           93 DVSSGK-CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             ETTTCC-EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCc-EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            999876 578889999999999999996 5667999999999999999998888774 4569999999999999999999


Q ss_pred             CeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE---EEEEeC
Q 004737          599 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP  673 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~---sl~fsp  673 (732)
                      +.|++||+++++.+..+. .+...+.+++|+|++++|++++ |+.|++||++++   .++..+..+...+.   .....+
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence            999999999998877764 4667899999999999999999 999999999887   67777777665432   233446


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEE--CCCeEEEeC
Q 004737          674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs--~DG~I~IWD  732 (732)
                      ++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++  .|+.|+||+
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            7889999999999999999999888 7789999999999999999999997  699999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-39  Score=380.33  Aligned_cols=302  Identities=20%  Similarity=0.303  Sum_probs=256.4

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-------cCCCce
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWI  495 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-------~h~~~V  495 (732)
                      .+.|..+++|+...+   ..+..+.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.+..+.       +|.+.|
T Consensus       166 ~s~D~~v~lwd~~~~---~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          166 GSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             EETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             EeCCCeEEEEECCCC---eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCE
Confidence            456788999997665   4567789999999999999999999999999999999999999988884       799999


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEecCCCCce------------------------------------------eEEeec
Q 004737          496 TDVRFSPSLSRLATSSADRTVRVWDTENPDYS------------------------------------------LRTFTG  533 (732)
Q Consensus       496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~------------------------------------------~~~l~~  533 (732)
                      ++++|+|++++|++++.|++|+|||+.+++..                                          ...+.+
T Consensus       243 ~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g  322 (611)
T 1nr0_A          243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG  322 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence            99999999999999999999999999865421                                          234468


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE---------------------------------------
Q 004737          534 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---------------------------------------  574 (732)
Q Consensus       534 h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~---------------------------------------  574 (732)
                      |...|++++|+|++. +|++++.|+.|++||+.++++...+                                       
T Consensus       323 h~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~  401 (611)
T 1nr0_A          323 HNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVD  401 (611)
T ss_dssp             CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSC
T ss_pred             CCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccc
Confidence            999999999999974 5669999999999999876543221                                       


Q ss_pred             --------------------------------------------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          575 --------------------------------------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  610 (732)
Q Consensus       575 --------------------------------------------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~  610 (732)
                                                                  .+...+.+++|+|++.++++++.|+.|++||+.++.
T Consensus       402 ~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~  481 (611)
T 1nr0_A          402 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  481 (611)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             ccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence                                                        011235789999999999999999999999998765


Q ss_pred             E--EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCC
Q 004737          611 C--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYE  685 (732)
Q Consensus       611 ~--i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~--~~~~~~~I~sl~fspdg~~L~sgs~dg  685 (732)
                      .  +.. .+|...|++++|+|++++|++++ |++|++||+.+..  +++..  +..|...|.+++|+|++++|++++.|+
T Consensus       482 ~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~  558 (611)
T 1nr0_A          482 VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN  558 (611)
T ss_dssp             EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccceeEEEECCCCCEEEEEECCC
Confidence            3  233 56999999999999999999999 9999999998621  33322  334889999999999999999999999


Q ss_pred             eEEEEECCCCe--E-EEEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          686 TLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       686 ~I~IwDl~t~~--~-~~~~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|++||+.++.  . ..+.+| ...|.+++|+|++. |++++.|++|++||
T Consensus       559 ~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~  608 (611)
T 1nr0_A          559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN  608 (611)
T ss_dssp             CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             cEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence            99999998764  2 355688 89999999999998 99999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.6e-39  Score=346.94  Aligned_cols=286  Identities=19%  Similarity=0.356  Sum_probs=242.2

Q ss_pred             eEEEEEecCCCCCeEEEEE-----cC-CCCEEEEEECCCcEEEEEcCC-------CeEEEEeccCCCceEEEEEcCCCCe
Q 004737          440 FTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSR  506 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~laf-----Sp-dg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~V~~l~fspdg~~  506 (732)
                      +.....+.+|.+.|++++|     ++ |+++||+|+.|++|+|||+.+       +.....+.+|...|.+++|+|++.+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~   90 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF   90 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence            4456789999999999999     77 999999999999999999874       3456788999999999999999999


Q ss_pred             EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE---eccCCeeEE
Q 004737          507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQM  583 (732)
Q Consensus       507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~---~~~~~i~~v  583 (732)
                      |++++.|++|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+.........   .+...+.++
T Consensus        91 l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~  168 (343)
T 2xzm_R           91 AISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV  168 (343)
T ss_dssp             EEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred             EEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeee
Confidence            9999999999999999876 5788899999999999999975 5668999999999999843332222   234569999


Q ss_pred             EEeCCC----------CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          584 RFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       584 ~~sp~g----------~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      +|+|++          .++++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|++||+.... 
T Consensus       169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~-  246 (343)
T 2xzm_R          169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT-  246 (343)
T ss_dssp             EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS-
T ss_pred             eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc-
Confidence            999986          6899999999999999 45677778889999999999999999999999 9999999995442 


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---EEc-----------cCCCCeeEEEEeCCCCE
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNGM  718 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~---~~~-----------~h~~~V~sla~spdg~~  718 (732)
                       .....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++..   .+.           +|...|.+++|+|++++
T Consensus       247 -~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~  323 (343)
T 2xzm_R          247 -YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK  323 (343)
T ss_dssp             -SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred             -ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence             222222 2456799999999998665 556888999999876532   222           67889999999999999


Q ss_pred             EEEEECCCeEEEeC
Q 004737          719 VASASHDKCVKIWK  732 (732)
Q Consensus       719 LaSgs~DG~I~IWD  732 (732)
                      |++|+.||.|+|||
T Consensus       324 l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          324 LFAGFTDGVIRTFS  337 (343)
T ss_dssp             EEEEETTSEEEEEE
T ss_pred             EEEecCCceEEEEE
Confidence            99999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.4e-39  Score=377.30  Aligned_cols=296  Identities=18%  Similarity=0.272  Sum_probs=250.5

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCe
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR  506 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~  506 (732)
                      .+++|+  .+.   ....+.+|.+.|++++|+|++. +|++|+.|++|++||..+++....+.+|...|++++|+|++++
T Consensus       130 ~v~~wd--~~~---~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~  204 (611)
T 1nr0_A          130 HVFLFD--TGT---SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL  204 (611)
T ss_dssp             EEEETT--TCC---BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             EEEEee--CCC---CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE
Confidence            455555  443   3456889999999999999987 5999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCeEEEEecCCCCceeEEee-------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----
Q 004737          507 LATSSADRTVRVWDTENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----  575 (732)
Q Consensus       507 Lasgs~Dg~I~IWDl~s~~~~~~~l~-------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----  575 (732)
                      |++++.|++|+|||+.++.. ...+.       +|.+.|.+++|+|++ .+|++++.|++|++||+.+++++..+.    
T Consensus       205 las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          205 FASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            99999999999999988764 55553       799999999999997 566699999999999999887665432    


Q ss_pred             ----------------------------------------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 004737          576 ----------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  615 (732)
Q Consensus       576 ----------------------------------------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l  615 (732)
                                                              +...|.+++|+|++.+|++++.|+.|++||+.++.+...+
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~  362 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF  362 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence                                                    2345899999999999999999999999999876543221


Q ss_pred             -c------------------------------------------------------------------------------
Q 004737          616 -Q------------------------------------------------------------------------------  616 (732)
Q Consensus       616 -~------------------------------------------------------------------------------  616 (732)
                       .                                                                              
T Consensus       363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~  442 (611)
T 1nr0_A          363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  442 (611)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence             0                                                                              


Q ss_pred             ---CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          617 ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       617 ---~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                         .|...+.+++|+|++++|++++ |++|++||+.+... ..+.. ..|...|.+++|+|++++|++++.|+.|++||+
T Consensus       443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~  520 (611)
T 1nr0_A          443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV  520 (611)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred             eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence               0234578899999999999999 99999999976521 22333 678899999999999999999999999999999


Q ss_pred             CC-CeEEE---EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          693 TE-NKTLT---LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       693 ~t-~~~~~---~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+ ++...   +..|...|++++|+||+++|++|+.|++|+|||
T Consensus       521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            87 55542   234999999999999999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-38  Score=341.44  Aligned_cols=288  Identities=21%  Similarity=0.321  Sum_probs=236.7

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEe-cc-CCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRTV  516 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l-~~-h~~~V~~l~fspdg~~Lasgs~Dg~I  516 (732)
                      ..+..+.+|.+.|++++|+++  +||+|+.|++|+|||+.++  +....+ .+ |...|.+++|+|++++|++|+.|++|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            456788999999999999988  9999999999999999874  455666 44 99999999999999999999999999


Q ss_pred             EEEecCCC------CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEe-ccCCeeEEEE
Q 004737          517 RVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRF  585 (732)
Q Consensus       517 ~IWDl~s~------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~-~~~~i~~v~~  585 (732)
                      +|||+...      ...+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.    .+++..+. +...|.+++|
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            99998632      12456788999999999999996 5677999999999999943    24555555 4466999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCC--CCEEEEEe-CCeEEEEECCCCCC-----cee
Q 004737          586 QPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSK-----GEC  655 (732)
Q Consensus       586 sp~g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~spd--g~~Lasgs-Dg~I~IWDl~t~~~-----~~~  655 (732)
                      +|++..|++++.|+.|++||..++  +++..+.+|...|.+++|+|+  +.+|++++ |++|++||+.....     ..+
T Consensus       162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence            999999999999999999999876  678889999999999999998  67899988 99999999875421     123


Q ss_pred             EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE--E-E-EccCCC-CeeEEEEeC--CCCEEEEEECCCe
Q 004737          656 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L-T-LSAHDK-LVSSLAAST--VNGMVASASHDKC  727 (732)
Q Consensus       656 i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~--~-~-~~~h~~-~V~sla~sp--dg~~LaSgs~DG~  727 (732)
                      ...+.. |...|.+++|++++ +|++++.|+.|++||..+++.  . . ...|.. .|.+++|+|  ++.+|++|+.||.
T Consensus       242 ~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          242 EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCc
Confidence            444444 78899999999766 799999999999999988742  3 2 347877 899999999  6889999999999


Q ss_pred             EEEeC
Q 004737          728 VKIWK  732 (732)
Q Consensus       728 I~IWD  732 (732)
                      |+|||
T Consensus       321 v~~W~  325 (330)
T 2hes_X          321 VNFWS  325 (330)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.3e-39  Score=349.16  Aligned_cols=279  Identities=15%  Similarity=0.210  Sum_probs=235.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-----------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeE
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  516 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I  516 (732)
                      .|...|.+++|+|||++|++++ |+++++||...           .........|...|.+++|+|++ .|++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            5677799999999999999888 77888887321           01111122356789999999984 78899999999


Q ss_pred             EEEecCCCCcee---EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCC-E
Q 004737          517 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R  591 (732)
Q Consensus       517 ~IWDl~s~~~~~---~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~-~  591 (732)
                      +|||+.+++...   ..+.+|.+.|++++|+|++ .+|++|+.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            999999876432   2356899999999999997 5666999999999999999999998874 56799999999875 6


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  667 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~  667 (732)
                      +++++.|+.|++||++++++...+.  .|...+.+++|+|+ +.+|++++ |+.|++||++++   +++..+..|...|+
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~  261 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT  261 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence            7889999999999999998887764  35667999999995 56888888 999999999987   77888999999999


Q ss_pred             EEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEeC
Q 004737          668 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  732 (732)
Q Consensus       668 sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWD  732 (732)
                      +++|+|++ .+|++++.|+.|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            99999998 578999999999999999999999999999999999999986 677999999999995

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.8e-38  Score=358.79  Aligned_cols=295  Identities=27%  Similarity=0.454  Sum_probs=261.2

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      ..|..+++|+...    ..+..+.+|...|++++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|+
T Consensus       281 ~~d~~i~~w~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~  355 (577)
T 2ymu_A          281 SDDKTVKLWNRNG----QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPD  355 (577)
T ss_dssp             ETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTT
T ss_pred             eCCCEEEEEeCCC----cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCC
Confidence            4567788998643    24567889999999999999999999999999999999765 456678899999999999999


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeE
Q 004737          504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ  582 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~  582 (732)
                      +++|++++.|+.|++||...  ..+..+.+|...|.+++|+|++.. |++++.|+.|++||.. ++.+..+. +...+.+
T Consensus       356 g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~  431 (577)
T 2ymu_A          356 GQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG  431 (577)
T ss_dssp             SSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTT-CCEEEEEECCSSCEEE
T ss_pred             CCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEE
Confidence            99999999999999999653  357788899999999999999754 5588899999999965 56666555 4567999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC  661 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~  661 (732)
                      ++|+|++.++++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++ |+.|++||.. +   +++..+..
T Consensus       432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~---~~~~~~~~  506 (577)
T 2ymu_A          432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTG  506 (577)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-S---CEEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-C---CEEEEEeC
Confidence            999999999999999999999996 5677888889999999999999999999999 9999999964 3   67888999


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |...|++++|+|++++|++++.|+.|++||........+.+|...|++++|+||+++|+|++.|++|+|||
T Consensus       507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999999999999999975444448889999999999999999999999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-39  Score=351.15  Aligned_cols=282  Identities=13%  Similarity=0.163  Sum_probs=236.5

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCeEE----EEeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRT  515 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~------Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~  515 (732)
                      ...|.+.|++++|+|||++||+|+.      |+.|++|+..++...    ....+|...|++++|+|++. +++++.||+
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~  116 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGA  116 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSC
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCE
Confidence            4579999999999999999999997      778999998776543    33456889999999999975 556788999


Q ss_pred             EEEEecCCCCcee---EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCC-
Q 004737          516 VRVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-  590 (732)
Q Consensus       516 I~IWDl~s~~~~~---~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~-  590 (732)
                      |+|||+.+++...   ....+|...|++++|+|++ .+|++++.|+.|++||+++++++..+.. ...+.+++|++++. 
T Consensus       117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             EEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             EEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence            9999998765322   2455899999999999997 4566999999999999999999988874 45699999999875 


Q ss_pred             EEEEEEcCCeEEEEECCCCeEEEEE--cCCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce
Q 004737          591 RILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF  666 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t~~~i~~l--~~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I  666 (732)
                      .+++++.|+.|++||++++++...+  ..|...+.+++|+|+ +.+|++++ |+.|++||++++   .++..+..+...|
T Consensus       196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v  272 (357)
T 4g56_B          196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNI  272 (357)
T ss_dssp             CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCE
T ss_pred             eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeE
Confidence            6888999999999999998766544  346778999999997 46788888 999999999887   6778888999999


Q ss_pred             EEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeC-CCCEEEEEECCCeEEEeC
Q 004737          667 HSCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  732 (732)
Q Consensus       667 ~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWD  732 (732)
                      ++++|+|++ .+|++++.|+.|+|||+.+++++...+|.+.|++++|+| ++.+|++|+.||.|+|||
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            999999987 578899999999999999999998889999999999998 789999999999999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-38  Score=335.62  Aligned_cols=284  Identities=17%  Similarity=0.246  Sum_probs=254.1

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      ....+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            45668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeee-----------eEEe-ccC--CeeE
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA-----------GVFK-CQS--GATQ  582 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i-----------~~~~-~~~--~i~~  582 (732)
                      .++.. +..+. |...|.+++|+|++.. +++++.+     +.|++||+......           ..+. +..  .+.+
T Consensus       104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          104 SNGQC-VATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             TTCCE-EEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             CCCcE-EEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            98763 55555 8889999999999755 4566667     99999999765422           2222 222  7999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          583 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      ++|+|++..+++++.||.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++   ..+..+.
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~  257 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE  257 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence            99999999999999999999999999 788889999999999999999999999999 999999999987   5555555


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~dg--------------~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                       +...+..++|+|++.++++++.++              .|++||+.+++.+ .+.+|...|++++|+|++++|++++.|
T Consensus       258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  336 (369)
T 3zwl_B          258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED  336 (369)
T ss_dssp             -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence             678899999999999999999988              8999999999888 777899999999999999999999999


Q ss_pred             CeEEEeC
Q 004737          726 KCVKIWK  732 (732)
Q Consensus       726 G~I~IWD  732 (732)
                      |.|+|||
T Consensus       337 g~v~iw~  343 (369)
T 3zwl_B          337 GFIRLHH  343 (369)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEE
Confidence            9999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.2e-37  Score=327.00  Aligned_cols=287  Identities=19%  Similarity=0.339  Sum_probs=246.4

Q ss_pred             eeEEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCC-----eEEEEeccCCCceEEEEEcCCCCeEEEEeC
Q 004737          439 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA  512 (732)
Q Consensus       439 ~~~~v~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~-----~~~~~l~~h~~~V~~l~fspdg~~Lasgs~  512 (732)
                      .+....+|+||.+.|+||+|+|+ +++||||+.|++|+|||+.+.     .....+.+|...|.+++|+|++++|++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            33455679999999999999997 689999999999999998754     356778999999999999999999999999


Q ss_pred             CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCC-
Q 004737          513 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL-  589 (732)
Q Consensus       513 Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g-  589 (732)
                      |+.|++|+..... .......+...+..+.+++++. ++++++.|+.+++||+..........  +...+..++|++++ 
T Consensus       107 d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          107 DGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             TSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred             cccceEEeecccc-eeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence            9999999999765 4666777888899999999865 55689999999999998665443322  34568889998764 


Q ss_pred             -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737          590 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  667 (732)
Q Consensus       590 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~  667 (732)
                       ..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++.   .++..+.. ...+.
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~  260 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN  260 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence             4678889999999999999999999999999999999999999999999 999999999987   66666654 46799


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-E---------EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          668 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-T---------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~---------~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++|+|++. +++++.|+.|++||++++..+ .         ...|...|++++|+|++++|++|+.||.|+|||
T Consensus       261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            999999886 667778999999999988765 2         236889999999999999999999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-39  Score=353.38  Aligned_cols=305  Identities=16%  Similarity=0.207  Sum_probs=266.1

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC----CeEEEEeccCCCceEEEE
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVR  499 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~V~~l~  499 (732)
                      ..|..+++|+..++.....+..+ .|...|++++|+|++++|++++.|+.|+|||+.+    .+.+..+.+|...|++++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~  120 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK  120 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence            56788999999887543333333 5899999999999999999999999999999987    458888999999999999


Q ss_pred             EcCC-CCeEEEEeCCCeEEEEecCCCC------cee--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          500 FSPS-LSRLATSSADRTVRVWDTENPD------YSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       500 fspd-g~~Lasgs~Dg~I~IWDl~s~~------~~~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      |+|+ +.+|++++.|+.|++||+.+..      ...  ..+..|...|.+++|+|++..++++++.|+.|++||++++++
T Consensus       121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            9998 8999999999999999999865      222  234679999999999999778888999999999999999999


Q ss_pred             eeEEec-------cCCeeEEEEeCCC-CEEEEEEcCC---eEEEEECCCC-eEEEEEc-CCCCCEEEEEEeC-CCCEEEE
Q 004737          571 AGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVETQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLAS  636 (732)
Q Consensus       571 i~~~~~-------~~~i~~v~~sp~g-~~ll~~s~dg---~I~IwDl~t~-~~i~~l~-~h~~~V~sla~sp-dg~~Las  636 (732)
                      +..+..       ...+.+++|+|++ ..+++++.++   .|++||++++ .++..+. +|...|.+++|+| ++.+|++
T Consensus       201 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s  280 (416)
T 2pm9_A          201 VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS  280 (416)
T ss_dssp             EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred             ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE
Confidence            888875       4669999999997 5788888888   9999999986 6667777 8999999999999 8999999


Q ss_pred             Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE-EE-------------
Q 004737          637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TL-------------  700 (732)
Q Consensus       637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~-~~-------------  700 (732)
                      ++ |+.|++||++++   +++..+..|...|.+++|+|++ .+|++++.|+.|++||+.+.... ..             
T Consensus       281 ~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  357 (416)
T 2pm9_A          281 SGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETD  357 (416)
T ss_dssp             EESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------
T ss_pred             EeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccc
Confidence            99 999999999987   7788888999999999999999 89999999999999999876532 10             


Q ss_pred             -c---------------------cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          701 -S---------------------AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       701 -~---------------------~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                       .                     .|...+.+++|+|++++|++++.||.|+|||
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~  411 (416)
T 2pm9_A          358 FWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN  411 (416)
T ss_dssp             ---------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred             ccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence             0                     1667888999999999999999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=8.2e-38  Score=340.66  Aligned_cols=286  Identities=14%  Similarity=0.152  Sum_probs=255.2

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe------EEEEeccCCCceEEEEEcCC----C---CeE
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SRL  507 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~V~~l~fspd----g---~~L  507 (732)
                      .....+.+|.+.|++|+|+|  ++|++|+.||.|+|||+.+++      .+..+.+|...|++++|+|+    +   .+|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            45677899999999999998  799999999999999999887      78888899999999999999    9   999


Q ss_pred             EEEeCCCeEEEEecCCCCc----eeEEeecC-----CcceEEEEEc----CCCCcEEEEEeCCCcEEEEECCC------C
Q 004737          508 ATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------G  568 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~----~~~~l~~h-----~~~V~sl~fs----pdg~~llaSgs~Dg~I~iWDl~t------~  568 (732)
                      ++++.|+.|++||+.+...    ....+..|     ...|.+++|+    |++..+|++++.||.|++||+.+      +
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            9999999999999987653    16677788     5899999999    98765377899999999999998      6


Q ss_pred             eeee-----EEe--------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---C---CCCEEEEEEeC
Q 004737          569 SCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWNT  629 (732)
Q Consensus       569 ~~i~-----~~~--------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h---~~~V~sla~sp  629 (732)
                      +.+.     .+.        +...+.+++|+|++ .+++++.|+.|++||+++++.+..+..   |   ...|.+++|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            6665     554        35679999999999 999999999999999999999999998   8   99999999999


Q ss_pred             CCCEEEEEe-C---CeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          630 SGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       630 dg~~Lasgs-D---g~I~IWDl~t~~~~~~i~~~~~-------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ++.+|++++ |   +.|++||++++   ..+..+..             |...|.+++|+|++.+|++++.|+.|++||+
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            999999998 8   89999999987   67777877             8999999999999999999999999999999


Q ss_pred             CCCeEE-EEc------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCeEEEeC
Q 004737          693 TENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK  732 (732)
Q Consensus       693 ~t~~~~-~~~------~h---------------~~~V~sla~spdg----------~~LaSgs~DG~I~IWD  732 (732)
                      .+++.+ .+.      .|               ...|++++|+|++          .+|++++.||.|+|||
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          321 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            999887 666      67               8999999999998          7999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-36  Score=349.33  Aligned_cols=295  Identities=26%  Similarity=0.450  Sum_probs=262.6

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      ..|..+++|+...    ..+..+.+|...|++++|+||+++|++++.|+.|++||. +++....+.+|...|++++|+|+
T Consensus       240 ~~d~~i~~w~~~~----~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~  314 (577)
T 2ymu_A          240 SDDKTVKLWNRNG----QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD  314 (577)
T ss_dssp             ETTSCEEEECTTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTT
T ss_pred             eCCCEEEEEeCCC----CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCC
Confidence            4567788898543    356678999999999999999999999999999999996 45778889999999999999999


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeE
Q 004737          504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQ  582 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~  582 (732)
                      +.+|++++.|++|++||+...  .+..+.+|...|.+++|+|++. ++++++.|+.|++||.. ++++..+. +...+.+
T Consensus       315 ~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~  390 (577)
T 2ymu_A          315 GQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG  390 (577)
T ss_dssp             SSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-CCEEEEEECCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEE
Confidence            999999999999999998753  4677889999999999999975 56689999999999965 56666665 4567999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC  661 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~  661 (732)
                      ++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++ |+.|++||...    ..+..+..
T Consensus       391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----~~~~~~~~  465 (577)
T 2ymu_A          391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----QLLQTLTG  465 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----CEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----CEEEEEcC
Confidence            999999999999999999999995 5677888899999999999999999999999 99999999743    57778889


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|++++|++++.||.|+|||
T Consensus       466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence            99999999999999999999999999999975544448889999999999999999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-37  Score=335.67  Aligned_cols=276  Identities=14%  Similarity=0.197  Sum_probs=249.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      |.+.|++++|+|++++|++++.|+.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++. .+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~  184 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VM  184 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EE
Confidence            788999999999999999999999999999 6778889999999999999999999999999999999999998865 46


Q ss_pred             EEeecCCcc---------------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEE
Q 004737          529 RTFTGHSTT---------------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRI  592 (732)
Q Consensus       529 ~~l~~h~~~---------------V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~l  592 (732)
                      ..+..+...               +.+++|++++  .+++++.|+.|++||+.+++.+..+. +...+.+++|+|++..|
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL  262 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence            667767666               9999999974  46688889999999999988887775 45679999999999999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737          593 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF  671 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f  671 (732)
                      ++++.|+.|++||+++++.+..+..|...|.+++|+|++ +|++++ |+.|++||+.++   ..+..+..+...|.+++|
T Consensus       263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~  338 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRI  338 (425)
T ss_dssp             EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEE
Confidence            999999999999999999888999999999999999999 888888 999999999887   788888889999999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCe--------------------EE-EEccCCC--CeeEEEEeCCCCEEEEEECCCeE
Q 004737          672 HPTFPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       672 spdg~~L~sgs~dg~I~IwDl~t~~--------------------~~-~~~~h~~--~V~sla~spdg~~LaSgs~DG~I  728 (732)
                      +|++.+|++++.|+.|++||+.+++                    .+ .+..|..  .|++++|+|++++|++++.||.|
T Consensus       339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence            9999999999999999999998877                    55 6778866  99999999999999999999999


Q ss_pred             EEeC
Q 004737          729 KIWK  732 (732)
Q Consensus       729 ~IWD  732 (732)
                      +|||
T Consensus       419 ~iw~  422 (425)
T 1r5m_A          419 SVVA  422 (425)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-36  Score=322.39  Aligned_cols=280  Identities=18%  Similarity=0.246  Sum_probs=250.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE---EEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~---~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ..+|.+.|++++|+|++++|++++ |+.|+|||+.+++.   ...+.  .|...|.+++|+|++++|++++.|+.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            347999999999999999999999 99999999987643   23333  7999999999999999999999999999999


Q ss_pred             cCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC
Q 004737          521 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       521 l~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      +.++.. ....+..|...|.+++|+|++ .++++++.|+.|++||+++++.+..+.. ...+.+++|+|++..+++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            998653 345678899999999999986 5566888999999999999998888874 5679999999999999999999


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      +.|++||+++++.+..+. +...+.+++|+|++++|++++ |+.|++||+.+..    ...+..|...|.+++|+|++++
T Consensus       205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCE
Confidence            999999999998888775 788999999999999999999 9999999998863    3456778899999999999999


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          678 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            9999999999999999999887778999999999999999999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=326.70  Aligned_cols=263  Identities=18%  Similarity=0.259  Sum_probs=240.8

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      .|..+++|++..+. ......+.+|...|.+++|++++.++++++.|++|+|||+.+++.+..+..|...+.+++|+|++
T Consensus        56 ~D~~v~vW~~~~~~-~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg  134 (321)
T 3ow8_A           56 LDDLVKVWKWRDER-LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS  134 (321)
T ss_dssp             TTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS
T ss_pred             CCCCEEEEECCCCC-eeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC
Confidence            35667777776543 33455789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEE
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQM  583 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v  583 (732)
                      ++|++++.|+.|++||++++. ....+..|...|.+++|+|++ .+|++++.|+.|++||+++++++..+.. ...+.++
T Consensus       135 ~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l  212 (321)
T 3ow8_A          135 QYLATGTHVGKVNIFGVESGK-KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL  212 (321)
T ss_dssp             SEEEEECTTSEEEEEETTTCS-EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred             CEEEEEcCCCcEEEEEcCCCc-eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEE
Confidence            999999999999999999876 466778899999999999997 5666999999999999999999988874 4569999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737          584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT  662 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~  662 (732)
                      +|+|++.+|++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++++ |+.|++||+.++   .++..+..|
T Consensus       213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~h  289 (321)
T 3ow8_A          213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFDH  289 (321)
T ss_dssp             EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCC
T ss_pred             EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcCC
Confidence            9999999999999999999999999999999999999999999999999999999 999999999887   888999999


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          663 GNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       663 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      ...|.+++|+|++.+|++++.|+.|++||+.
T Consensus       290 ~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          290 QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-37  Score=343.75  Aligned_cols=260  Identities=24%  Similarity=0.464  Sum_probs=237.9

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..++.   .+..+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++.
T Consensus       129 Dg~i~vwd~~~~~---~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~  205 (410)
T 1vyh_C          129 DATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD  205 (410)
T ss_dssp             SSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCC
Confidence            5667778877764   3567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  584 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~  584 (732)
                      +|++|+.|++|++||+.++. .+..+.+|...|.++.|+|++ .++++|+.|+.|++||+.++++...+.. ...+.+++
T Consensus       206 ~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~  283 (410)
T 1vyh_C          206 HIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS  283 (410)
T ss_dssp             EEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEE
Confidence            99999999999999999876 578899999999999999996 5677999999999999999998887764 45699999


Q ss_pred             EeCC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737          585 FQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR  643 (732)
Q Consensus       585 ~sp~--------------------g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~  643 (732)
                      |+|+                    +.++++++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~  363 (410)
T 1vyh_C          284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR  363 (410)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred             EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence            9996                    56899999999999999999999999999999999999999999999999 99999


Q ss_pred             EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      +||+.++   .++..+..|...|++++|+|++.+|++++.|+.|++|+++
T Consensus       364 vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          364 VWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999877   6778888999999999999999999999999999999863

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.7e-37  Score=330.84  Aligned_cols=282  Identities=15%  Similarity=0.190  Sum_probs=247.1

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      +..|.++|++++|+|++++|++++.|+.|+|||+.+++  .+..+.+|...|++++|+|++++|++++.|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45699999999999999999999999999999999987  8888999999999999999999999999999999999987


Q ss_pred             CCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEEe--ccCCeeEEEEeCCCCEEEEEEc
Q 004737          524 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       524 ~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~---i~~~~--~~~~i~~v~~sp~g~~ll~~s~  597 (732)
                      +... ...+..|...|.+++|+|++ .++++++.|+.|++||++.+..   ...+.  +...+.+++|+|++..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            6532 23447799999999999996 5666888999999999988763   22332  3567999999999999999999


Q ss_pred             CCeEEEEEC------------------CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737          598 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       598 dg~I~IwDl------------------~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~  658 (732)
                      |+.|++||+                  ..++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++   .++..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~  239 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT  239 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence            999999995                  46788889989999999999999999999999 999999999887   67888


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CeE---------------------------------------
Q 004737          659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT---------------------------------------  697 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t--~~~---------------------------------------  697 (732)
                      +..+...|.+++|+|++.+++++ .|+.|++|++.+  ++.                                       
T Consensus       240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (372)
T 1k8k_C          240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  318 (372)
T ss_dssp             EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence            88899999999999999877766 999999999987  531                                       


Q ss_pred             EEE-ccCCCCeeEEEEe-CCC---CEEEEEECCCeEEEeC
Q 004737          698 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK  732 (732)
Q Consensus       698 ~~~-~~h~~~V~sla~s-pdg---~~LaSgs~DG~I~IWD  732 (732)
                      ..+ .+|...|++++|+ +++   .+|++|+.||.|+|||
T Consensus       319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence            112 3899999999976 666   8999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.4e-36  Score=356.83  Aligned_cols=285  Identities=21%  Similarity=0.356  Sum_probs=244.2

Q ss_pred             EEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCC-----CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737          441 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  514 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg  514 (732)
                      .....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+     +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            3456789999999999999864 7999999999999999875     345678899999999999999999999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccCCeeEEEEeCCC-
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL-  589 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~~i~~v~~sp~g-  589 (732)
                      +|+|||+.++. ....+.+|...|.+++|+|++. +|++|+.|+.|++||+..........    +...+.+++|+|++ 
T Consensus       453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            99999999865 5778899999999999999975 45599999999999987554333322    33459999999986 


Q ss_pred             -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE
Q 004737          590 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  667 (732)
Q Consensus       590 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~  667 (732)
                       ..+++++.|+.|++||+++.++...+.+|...|++++|+|++++|++++ |+.|++||++++   .++..+.. ...|.
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~  606 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH  606 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred             cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence             5799999999999999999999999999999999999999999999999 999999999987   56665543 56799


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-------------------CCCeeEEEEeCCCCEEEEEECCCe
Q 004737          668 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-------------------DKLVSSLAASTVNGMVASASHDKC  727 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-------------------~~~V~sla~spdg~~LaSgs~DG~  727 (732)
                      +++|+|++.+++++ .++.|+|||+.++..+ .+..+                   ...+++++|+|++++|++|+.||.
T Consensus       607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            99999999866555 5667999999998876 23211                   123789999999999999999999


Q ss_pred             EEEeC
Q 004737          728 VKIWK  732 (732)
Q Consensus       728 I~IWD  732 (732)
                      |+|||
T Consensus       686 i~iW~  690 (694)
T 3dm0_A          686 IRVWG  690 (694)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-36  Score=312.76  Aligned_cols=279  Identities=15%  Similarity=0.237  Sum_probs=248.6

Q ss_pred             eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +..+..+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            4567889999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeC-CCCEEEEE
Q 004737          520 DTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILAA  595 (732)
Q Consensus       520 Dl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp-~g~~ll~~  595 (732)
                      ++....  .....+.+|...|.++.|.   ..++++++.|+.|++||  .++....+. +...+.+++|.+ ++..++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence            987653  3466788999999999994   35777999999999999  566666665 456789999988 88999999


Q ss_pred             EcCCeEEEEECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004737          596 AIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  673 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp  673 (732)
                      +.|+.|++||  ..+....+.. |...|.+++|+|++. +++++ |+.|++||++++   ..+..+..|...|.+++|+|
T Consensus       162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~  235 (313)
T 3odt_A          162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLLP  235 (313)
T ss_dssp             ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECT
T ss_pred             ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEec
Confidence            9999999999  4566677776 899999999999998 66666 999999999987   77888888999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. +++++.||.|+|||
T Consensus       236 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          236 NG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             TS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             CC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            99 5999999999999999999887 6778999999999999998 66799999999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.6e-36  Score=320.10  Aligned_cols=265  Identities=18%  Similarity=0.289  Sum_probs=234.7

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      .|..+++|+..++.   .+..+..|...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|++++|+|++
T Consensus        33 ~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  109 (304)
T 2ynn_A           33 YSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK  109 (304)
T ss_dssp             TTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS
T ss_pred             CCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC
Confidence            36678888888775   456788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCeeE
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ  582 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~~  582 (732)
                      .+|++|+.|++|++||++++......+.+|...|.+++|+|.+..+|++|+.|+.|++||++.......+..  ...+..
T Consensus       110 ~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~  189 (304)
T 2ynn_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY  189 (304)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEE
Confidence            999999999999999999876667788999999999999997678888999999999999988776665542  356888


Q ss_pred             EEEeC--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737          583 MRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       583 v~~sp--~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      +.|.|  ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |++|++||+.+.   +++..+
T Consensus       190 ~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~  266 (304)
T 2ynn_A          190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTL  266 (304)
T ss_dssp             EEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEE
T ss_pred             EEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeec
Confidence            88886  677999999999999999999999999999999999999999999999999 999999999987   788888


Q ss_pred             ecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 004737          660 SCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~  695 (732)
                      ..+...+.+++|+|++. .+++++.++.+.+|++.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~  303 (304)
T 2ynn_A          267 NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND  303 (304)
T ss_dssp             CCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred             cCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence            88889999999999885 3345555666888887653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=329.90  Aligned_cols=245  Identities=17%  Similarity=0.273  Sum_probs=212.3

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE----EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~----~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ..|...|++++|+||+ .|++|+.||+|+|||+++++.+.    .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.
T Consensus        79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~  157 (344)
T 4gqb_B           79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA  157 (344)
T ss_dssp             EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence            3466789999999985 78899999999999999886543    345899999999999999999999999999999999


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCC-CEEEEEEcC
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIE  598 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g-~~ll~~s~d  598 (732)
                      ++. .+..+.+|...|.+++|++++..+|++++.|+.|++||++++++...+..   ...+.+++|+|++ .++++++.|
T Consensus       158 ~~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d  236 (344)
T 4gqb_B          158 QQV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN  236 (344)
T ss_dssp             TTE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred             CCc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence            865 58889999999999999999988999999999999999999988877653   2358899999964 567788999


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                      +.|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++   ++ ..+.+|...|++++|+|++.
T Consensus       237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~~-~~~~~H~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---EL-FRSQAHRDFVRDATWSPLNH  312 (344)
T ss_dssp             SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---EE-EEECCCSSCEEEEEECSSST
T ss_pred             CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---cE-EEEcCCCCCEEEEEEeCCCC
Confidence            999999999999999999999999999999998 5788888 999999999876   33 45678999999999999986


Q ss_pred             E-EEEEEcCCeEEEEECCCCeE
Q 004737          677 S-LLVIGCYETLELWNMTENKT  697 (732)
Q Consensus       677 ~-L~sgs~dg~I~IwDl~t~~~  697 (732)
                      . |++++.|+.|++|++.+...
T Consensus       313 ~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          313 SLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             TEEEEEETTSCEEEEECCC---
T ss_pred             eEEEEEcCCCeEEEEECCCCCC
Confidence            5 56889999999999987543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.7e-37  Score=328.46  Aligned_cols=285  Identities=15%  Similarity=0.275  Sum_probs=245.6

Q ss_pred             EecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeEEEEecc-----CCCceEEEEEcCC----CCeEEEEe
Q 004737          445 LIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATSS  511 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-----h~~~V~~l~fspd----g~~Lasgs  511 (732)
                      ...+|.+.|++++|+|+    ..++++++.++.|+|||+.+++.+..+..     |...|++++|+|+    +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            45589999999999984    44666666677999999998877666643     6678999999998    67999999


Q ss_pred             CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE----eccCCeeEEEEeC
Q 004737          512 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQP  587 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~----~~~~~i~~v~~sp  587 (732)
                      .||.|++||+.+++ .+..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+    .+...+.+++|+|
T Consensus        93 ~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           93 SRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             TTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             CCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            99999999999876 477888999999999999944677889999999999999999998887    3567799999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEEE----------------------------EcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737          588 RLGRILAAAIENYISILDVETQVCRLK----------------------------LQGHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       588 ~g~~ll~~s~dg~I~IwDl~t~~~i~~----------------------------l~~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      ++..+++++.|+.|++||+++++....                            ...|...|.+++|+  +.+|++++ 
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  249 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC  249 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred             CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence            999999999999999999997654332                            23389999999998  77899988 


Q ss_pred             CCeEEEEECCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCeE-----EEE
Q 004737          639 DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LTL  700 (732)
Q Consensus       639 Dg~I~IWDl~t~~~-----------~~~i~~~~~~~~~I~sl~fspd--g~~L~sgs~dg~I~IwDl~t~~~-----~~~  700 (732)
                      |+.|++||+.+...           ...+..+..|...|.+++|+|+  +.+|++++.|+.|++||+.+++.     ..+
T Consensus       250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  329 (366)
T 3k26_A          250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTL  329 (366)
T ss_dssp             SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEE
T ss_pred             CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEE
Confidence            99999999987532           1347778888999999999999  99999999999999999998742     256


Q ss_pred             ccC--CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          701 SAH--DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       701 ~~h--~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ..|  ...|++++|+|++++|++++.||.|+|||
T Consensus       330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence            666  79999999999999999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.7e-36  Score=326.64  Aligned_cols=284  Identities=16%  Similarity=0.220  Sum_probs=237.0

Q ss_pred             EEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEEcCCCeEEEEec--cCCCceEEEEEcC-CCCeEEEEeCCCeE
Q 004737          441 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRTV  516 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~V~~l~fsp-dg~~Lasgs~Dg~I  516 (732)
                      ..+..+.+|.+.|++++|+|++ ++|++|+.|+.|+|||+.+++....+.  +|...|.+++|+| ++.+|++++.|+.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            4566789999999999999999 999999999999999999888777765  6999999999999 78999999999999


Q ss_pred             EEEecCCCCceeEEeec---CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC-E
Q 004737          517 RVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-R  591 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~---h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~-~  591 (732)
                      ++||+...  ....+..   |...|.+++|+|++ .+|++++.|+.|++||++ ++.+..+. +...+.+++|+|++. .
T Consensus       144 ~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          144 TLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEETTSC--EEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEECCCC--ceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCE
Confidence            99999963  3455544   44889999999996 466799999999999995 66666665 456799999999998 8


Q ss_pred             EEEEEcCCeEEEEECCC----CeEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCCCceeEEEee----c
Q 004737          592 ILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS----C  661 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t----~~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~----~  661 (732)
                      +++++.|+.|++||+++    +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||+++......+....    .
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ  298 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence            99999999999999998    6677666 5999999999999 999999999 9999999999875433332111    1


Q ss_pred             CC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc--CCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          662 TG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       662 ~~----------~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~--h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                      +.          ..+..++|+|++.+  +++.|+.|++||+.+++.+ .+..  |...+.+++|+|++++|++++ ||.|
T Consensus       299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i  375 (383)
T 3ei3_B          299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNI  375 (383)
T ss_dssp             TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEE
T ss_pred             cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcE
Confidence            11          33445666666665  6678999999999999887 5554  567888889999999999997 9999


Q ss_pred             EEeC
Q 004737          729 KIWK  732 (732)
Q Consensus       729 ~IWD  732 (732)
                      +|||
T Consensus       376 ~iw~  379 (383)
T 3ei3_B          376 LIWN  379 (383)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-36  Score=327.33  Aligned_cols=295  Identities=16%  Similarity=0.236  Sum_probs=248.4

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEc----CCCe------EEEEecc-----
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE-----  490 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~----~t~~------~~~~l~~-----  490 (732)
                      .+..+|++....   .......|.+.|++++|+|+++ +||+|+.|+.|+|||+    .+++      ....+..     
T Consensus        25 ~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (425)
T 1r5m_A           25 SIDSSDDLDGFV---KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS  101 (425)
T ss_dssp             ---------CCC---EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred             cccccccchhhh---hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence            344556654432   2233456779999999999999 9999999999999999    8887      4555544     


Q ss_pred             -----CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 004737          491 -----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI  565 (732)
Q Consensus       491 -----h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl  565 (732)
                           |...|++++|+|++++|++++.||.|++||.. + ..+..+.+|...|.+++|+|++. +|++++.|+.|++||+
T Consensus       102 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~  178 (425)
T 1r5m_A          102 ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT-G-ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNV  178 (425)
T ss_dssp             ------CBCEEEEEECTTSSEEEEEETTSCEEEEETT-S-CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEET
T ss_pred             ccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-C-CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEEC
Confidence                 68899999999999999999999999999943 3 35778889999999999999965 5568888999999999


Q ss_pred             CCCeeeeEEeccCC----------------eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737          566 NNGSCAGVFKCQSG----------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       566 ~t~~~i~~~~~~~~----------------i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp  629 (732)
                      .+++.+..+..+..                +.+++|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  257 (425)
T 1r5m_A          179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND  257 (425)
T ss_dssp             TTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET
T ss_pred             CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC
Confidence            99998887775433                888999987 6799999999999999999998888999999999999999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCe
Q 004737          630 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV  707 (732)
Q Consensus       630 dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V  707 (732)
                      ++.+|++++ |+.|++||+++.   ..+..+..|...|.+++|+|++ ++++++.|+.|++||+.+++.+ .+..|...|
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i  333 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI  333 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CCCEEEEEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence            999999999 999999999887   5667777889999999999999 9999999999999999999887 667899999


Q ss_pred             eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          708 SSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       708 ~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+++|+|++++|++++.||.|+|||
T Consensus       334 ~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEE
Confidence            9999999999999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.6e-36  Score=320.08  Aligned_cols=287  Identities=16%  Similarity=0.204  Sum_probs=241.5

Q ss_pred             EEecCCCCCeEEEEEcCCCCEE-EEEEC---CCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcCC---CCeEEEEeCCCe
Q 004737          444 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT  515 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~L-asgs~---Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fspd---g~~Lasgs~Dg~  515 (732)
                      ..+.+|.+.|++++|+|++..+ ++|+.   |+.|+|||+.+++..... .+|...|++++|+|+   +.+|++++.||.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            4467899999999999999755 55555   899999999998776443 379999999999998   699999999999


Q ss_pred             EEEEecCCCCceeEEeecCCcceEEEEE------cCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEecc-----CCeeEE
Q 004737          516 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQ-----SGATQM  583 (732)
Q Consensus       516 I~IWDl~s~~~~~~~l~~h~~~V~sl~f------spdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~~-----~~i~~v  583 (732)
                      |++||+.++...+..+.+|...|.+++|      +|++ .+|++++.|+.|++||+++++ .+..+..+     ..+.++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence            9999999877567889999999999966      4565 567799999999999999887 56666532     257788


Q ss_pred             E----EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC---CCCEEEEEe-CCeEEEEECCCCCCcee
Q 004737          584 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC  655 (732)
Q Consensus       584 ~----~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp---dg~~Lasgs-Dg~I~IWDl~t~~~~~~  655 (732)
                      +    |++++..+++++.|+.|++||+++++.... ..|...|.+++|+|   ++.+|++++ |+.|++||+++......
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence            7    678999999999999999999999987555 45889999999999   899999999 99999999987643222


Q ss_pred             E--EEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC-------------------eEE-EEccCCCCeeEEEE
Q 004737          656 I--HELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN-------------------KTL-TLSAHDKLVSSLAA  712 (732)
Q Consensus       656 i--~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~-------------------~~~-~~~~h~~~V~sla~  712 (732)
                      +  ..+..|...|.+++|+|++. +|++++.|+.|++||+..+                   +.+ .+..|...|++++|
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence            2  24457899999999999998 8999999999999999753                   223 67789999999999


Q ss_pred             eCCCCEEE-EEECCCeEEEeC
Q 004737          713 STVNGMVA-SASHDKCVKIWK  732 (732)
Q Consensus       713 spdg~~La-Sgs~DG~I~IWD  732 (732)
                      +|++++|+ +++.||.|+|||
T Consensus       330 s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          330 SPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             CSSSTTEEEEEETTSEEEEEE
T ss_pred             cCCCCeEEEEecCCCcEEEEE
Confidence            99999888 899999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=336.88  Aligned_cols=284  Identities=14%  Similarity=0.241  Sum_probs=236.7

Q ss_pred             EEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCC---Ce---EEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737          442 EFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSAD  513 (732)
Q Consensus       442 ~v~~l-~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t---~~---~~~~l~~h~~~V~~l~fspdg~~Lasgs~D  513 (732)
                      .+..+ .+|.+.|++++|+| ++++||+|+.|++|+|||+.+   +.   ....+ .|...|++++|+|++.+|++++.|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            45667 89999999999999 999999999999999999876   33   23333 599999999999999999999999


Q ss_pred             CeEEEEecC---CCCceeEEeec------------CCcceEEEE--EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004737          514 RTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC  576 (732)
Q Consensus       514 g~I~IWDl~---s~~~~~~~l~~------------h~~~V~sl~--fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~  576 (732)
                      |+|++||++   ++. ....+.+            +...+.++.  +++++ .++++++.|+.|++||+++++++..+..
T Consensus       133 g~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          133 GQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             SEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            999999995   333 2332222            445566666  44554 6777999999999999999999988874


Q ss_pred             ---cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeC----CCCEEEEEe-CCeEEEEEC
Q 004737          577 ---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWSI  647 (732)
Q Consensus       577 ---~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~sp----dg~~Lasgs-Dg~I~IWDl  647 (732)
                         ...+.+++|+|++.++++++.||.|++||+++++++..+. .|...|.+++|+|    ++.+|++++ |+.|++||+
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~  290 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF  290 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence               5789999999999999999999999999999999999886 6888999997665    577999998 999999999


Q ss_pred             CCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE
Q 004737          648 GSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL  700 (732)
Q Consensus       648 ~t~~~~~~i~~~~~--------------------------~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~  700 (732)
                      +++   .++..+..                          |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .+
T Consensus       291 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          291 VKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             TTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             CCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence            887   55555443                          44568889999 7789999999999999999887644 22


Q ss_pred             cc-------------------------------------CCCCeeEEEEeCC--CCEEEEEECCCeEEEeC
Q 004737          701 SA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK  732 (732)
Q Consensus       701 ~~-------------------------------------h~~~V~sla~spd--g~~LaSgs~DG~I~IWD  732 (732)
                      .+                                     |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            22                                     8999999999998  77999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.8e-36  Score=328.42  Aligned_cols=298  Identities=15%  Similarity=0.209  Sum_probs=249.1

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..++..   ...+..| ..+.+..|++++++|++|+.|+.|+|||+.+++....+.+|...|++++|+|+++
T Consensus        77 d~~v~i~d~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  152 (420)
T 3vl1_A           77 DGHDFLFNTIIRDG---SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGE  152 (420)
T ss_dssp             TTEEEEEECCSEET---TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSS
T ss_pred             CCcEEEEEecccce---eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCC
Confidence            45667777665532   2334455 4455568899999999999999999999999999998899999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--------
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------  577 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--------  577 (732)
                      +|++++.|+.|++||+.++. .+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++++..+..+        
T Consensus       153 ~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~  230 (420)
T 3vl1_A          153 ALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN  230 (420)
T ss_dssp             EEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred             EEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence            99999999999999999876 467888999999999999996 45669999999999999999998888632        


Q ss_pred             -----------------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCC-EEEEEe
Q 004737          578 -----------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS  638 (732)
Q Consensus       578 -----------------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~-~Lasgs  638 (732)
                                       ..+.+++|+|++.++++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  310 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY  310 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence                             234445567888999999999999999999998777765 4788999999999998 999988


Q ss_pred             -CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC----------eEEEEccCCCC
Q 004737          639 -DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN----------KTLTLSAHDKL  706 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~----------~~~~~~~h~~~  706 (732)
                       ||.|++||++++.  ..+..+.. +...+.++.+ +++.+|++++.|+.|++||+...          ....+..|...
T Consensus       311 ~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (420)
T 3vl1_A          311 ENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA  387 (420)
T ss_dssp             TTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC
T ss_pred             CCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc
Confidence             9999999999864  23455555 5667777755 57789999999999999998762          23356688999


Q ss_pred             eeEEEEeCCCC---EEEEEECCCeEEEeC
Q 004737          707 VSSLAASTVNG---MVASASHDKCVKIWK  732 (732)
Q Consensus       707 V~sla~spdg~---~LaSgs~DG~I~IWD  732 (732)
                      |.+++|+|++.   .|++++.+|.+.+|+
T Consensus       388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          388 VSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             CCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             eEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            99999999999   788888999999995

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.1e-35  Score=313.29  Aligned_cols=266  Identities=17%  Similarity=0.273  Sum_probs=232.2

Q ss_pred             CCCceeeeeecCCC--ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          424 PRDRVGRSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       424 ~~d~~~r~wd~~~g--~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      +.|..+++|+....  .....+..+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|+
T Consensus        37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~  116 (319)
T 3frx_A           37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID  116 (319)
T ss_dssp             ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc
Confidence            34667777776532  2234577899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC-----CcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINNGSCAGVFK-  575 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg-----~~llaSgs~Dg~I~iWDl~t~~~i~~~~-  575 (732)
                      |++.+|++|+.|++|++||++.  ..+..+.+|...|.++.|.|..     ..++++++.|+.|++||+++.++...+. 
T Consensus       117 ~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  194 (319)
T 3frx_A          117 KKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG  194 (319)
T ss_dssp             TTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC
Confidence            9999999999999999999974  3577888999999999999863     3478899999999999999998887776 


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCcee
Q 004737          576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC  655 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~  655 (732)
                      +...+.+++|+|++.+|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|+++.++.+++|++...   ..
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~---~~  270 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ---YL  270 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETTEEEEEEETTE---EE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC---ee
Confidence            456799999999999999999999999999999999988875 46899999999999999999888999999875   44


Q ss_pred             EEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          656 IHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       656 i~~~~--------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +..+.        .+...+.+++|+|+|++|++++.|+.|+|||+.+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             eeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            44433        23567899999999999999999999999998654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.6e-35  Score=315.53  Aligned_cols=258  Identities=23%  Similarity=0.347  Sum_probs=230.2

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----eEEEEeccCCCceEEEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~V~~l~f  500 (732)
                      .|..+++|+..++.   .+..+..|...|.+++|+|++++|++|+.|+.|+|||+.+.    .....+.+|.+.|.++.|
T Consensus        75 ~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~  151 (340)
T 1got_B           75 QDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF  151 (340)
T ss_dssp             TTTEEEEEETTTCC---EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEE
T ss_pred             CCCcEEEEECCCCC---cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEE
Confidence            35677888877765   35667899999999999999999999999999999999865    456778899999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCC
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG  579 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~  579 (732)
                      ++++. |++++.|++|++||+.++. .+..+.+|...|.+++|+|++ .++++|+.|+.|++||++++.++..+.. ...
T Consensus       152 ~~~~~-l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~  228 (340)
T 1got_B          152 LDDNQ-IVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESD  228 (340)
T ss_dssp             EETTE-EEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSC
T ss_pred             CCCCc-EEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC
Confidence            98764 8999999999999999866 577889999999999999986 5777999999999999999999888874 456


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeE
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI  656 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i  656 (732)
                      |.+++|+|++..|++++.|+.|++||+++++.+..+..  +...|.+++|+|++.+|++++ |+.|++||+.+.   ..+
T Consensus       229 v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~  305 (340)
T 1got_B          229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRA  305 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEe
Confidence            99999999999999999999999999999988777653  335799999999999999999 999999999887   677


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          657 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      ..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus       306 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            88889999999999999999999999999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-37  Score=333.26  Aligned_cols=285  Identities=15%  Similarity=0.189  Sum_probs=229.9

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      .+..|.+.|+|++|+|++++||+|+.|+.|+|||+.++  +.+..+.+|...|++++|+|++++|++++.|++|+|||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34557789999999999999999999999999999988  7788889999999999999999999999999999999999


Q ss_pred             CCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEEe--ccCCeeEEEEeCCCCEEEEE
Q 004737          523 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       523 s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~---~i~~~~--~~~~i~~v~~sp~g~~ll~~  595 (732)
                      ++.  .....+.+|...|.+++|+|++. +|++++.|+.|++||+++++   +...+.  +...+.+++|+|++.+|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            865  23566788999999999999865 55588899999999999877   355555  46679999999999999999


Q ss_pred             EcCCeEEEEECC------------------CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc-ee
Q 004737          596 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC  655 (732)
Q Consensus       596 s~dg~I~IwDl~------------------t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~-~~  655 (732)
                      +.|+.|++||++                  .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            999999999985                  35566667 8999999999999999999999 999999999987431 12


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe---------------------------------------
Q 004737          656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK---------------------------------------  696 (732)
Q Consensus       656 i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~---------------------------------------  696 (732)
                      +..+..|...|.+++|+|++.+|++++.++. .+|+.....                                       
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESAIVAAGYNYSP-ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS  322 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTEEEEEESSSSE-EEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred             eEeecCCCCceEEEEEcCCCCEEEEEcCCcE-EEEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence            6677889999999999999998877765554 477664211                                       


Q ss_pred             EE-E-------------EccCCCCeeEEEEeCCC-C---EEEEEECCCeEEEeC
Q 004737          697 TL-T-------------LSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK  732 (732)
Q Consensus       697 ~~-~-------------~~~h~~~V~sla~spdg-~---~LaSgs~DG~I~IWD  732 (732)
                      .+ .             ...|.+.|+++++.+.. .   .|+||+.||.|+|||
T Consensus       323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence            00 0             01299999999976544 3   699999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-36  Score=331.29  Aligned_cols=278  Identities=19%  Similarity=0.306  Sum_probs=244.2

Q ss_pred             CeEEEEEcCCCC-EEEEE----------ECCCcEEEEEcCCCe---EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEE
Q 004737          452 KVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  517 (732)
Q Consensus       452 ~V~~lafSpdg~-~Lasg----------s~Dg~I~VWd~~t~~---~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~  517 (732)
                      .|.+++|+|+++ +|++|          +.|+.|+|||+.+++   .+..+ .|...|++++|+|++.+|++++.||.|+
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            588999999997 99999          899999999999875   33333 5889999999999999999999999999


Q ss_pred             EEecCC---CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------eeeEE----eccCCeeEEE
Q 004737          518 VWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQMR  584 (732)
Q Consensus       518 IWDl~s---~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~------~i~~~----~~~~~i~~v~  584 (732)
                      +||+.+   +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++      ....+    .+...+.+++
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            999987   2336778889999999999999966788899999999999999876      33322    3456799999


Q ss_pred             EeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCC------CCCEEEEEEeCCC-CEEEEEe-CC---eEEEEECCCCCC
Q 004737          585 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGSK  652 (732)
Q Consensus       585 ~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h------~~~V~sla~spdg-~~Lasgs-Dg---~I~IWDl~t~~~  652 (732)
                      |+|+ +..+++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .+|++++ |+   .|++||+++.. 
T Consensus       173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-  251 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-  251 (416)
T ss_dssp             ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-
T ss_pred             eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-
Confidence            9999 688999999999999999999999888876      7899999999997 6888888 77   99999998853 


Q ss_pred             ceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCC-CEEEEEECCCeE
Q 004737          653 GECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCV  728 (732)
Q Consensus       653 ~~~i~~~~-~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg-~~LaSgs~DG~I  728 (732)
                       ..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.|
T Consensus       252 -~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          252 -TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             -SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred             -CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence             3445566 7889999999999 8999999999999999999999887 777999999999999999 899999999999


Q ss_pred             EEeC
Q 004737          729 KIWK  732 (732)
Q Consensus       729 ~IWD  732 (732)
                      +|||
T Consensus       331 ~iw~  334 (416)
T 2pm9_A          331 EVQT  334 (416)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=310.50  Aligned_cols=273  Identities=21%  Similarity=0.334  Sum_probs=225.2

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC--eEEEEeccCCCceEEEEEcC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~V~~l~fsp  502 (732)
                      .|..+++|+...+..........+|.+.|++++|+|++++||+|+.|++|+|||+...  +.+..+.+|...|.+++|+|
T Consensus        36 ~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp  115 (345)
T 3fm0_A           36 GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP  115 (345)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT
T ss_pred             CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC
Confidence            3566788887776543344455799999999999999999999999999999999876  45788899999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEEe-cc
Q 004737          503 SLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK-CQ  577 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i--~~~~-~~  577 (732)
                      ++++|++|+.|++|++||+.+...  .+..+.+|...|.+++|+|++. +|++++.|+.|++||++.++..  ..+. +.
T Consensus       116 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~  194 (345)
T 3fm0_A          116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHE  194 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCC
Confidence            999999999999999999987542  3567789999999999999975 5669999999999999887543  4444 44


Q ss_pred             CCeeEEEEeCCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CC
Q 004737          578 SGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE  640 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t---------------~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg  640 (732)
                      ..|.+++|+|++.+|++++.|+.|++||...               .+++..+.+ |...|.+++|++++.+|++++ |+
T Consensus       195 ~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~  274 (345)
T 3fm0_A          195 STVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD  274 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS
T ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC
Confidence            6799999999999999999999999999632               134555655 888999999999999999998 99


Q ss_pred             eEEEEECCCCCCc------eeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEE
Q 004737          641 LVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       641 ~I~IWDl~t~~~~------~~i~~~~~~~~~I~sl~fspdg-~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      .|++|+.......      ...+....|...|.+++|+|++ .+|++++.|+.|++|++.+++..
T Consensus       275 ~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            9999998764321      1122345788999999999998 48999999999999999887755

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1e-35  Score=323.56  Aligned_cols=265  Identities=14%  Similarity=0.220  Sum_probs=218.5

Q ss_pred             CCceeeeeecCCCceeEE-EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE----EEeccCCCceEEEE
Q 004737          425 RDRVGRSAEVGKGFTFTE-FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVR  499 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~-v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~  499 (732)
                      +|..+++|+..++..... .....+|...|++++|+|+++ +++++.||+|+|||+.+++..    ....+|...|++++
T Consensus        68 wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~  146 (357)
T 4g56_B           68 WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS  146 (357)
T ss_dssp             CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred             ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence            366778888777654332 234567999999999999985 556788999999999887654    33458999999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---c
Q 004737          500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---C  576 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~  576 (732)
                      |+|++++|++|+.|++|+|||+.++. .+..+.+|...|.+++|++++..++++++.|+.|++||++++++...+.   .
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~  225 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS  225 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc
Confidence            99999999999999999999999865 5788899999999999999988888899999999999999988776654   2


Q ss_pred             cCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEECCCCCCc
Q 004737          577 QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKG  653 (732)
Q Consensus       577 ~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs-Dg~I~IWDl~t~~~~  653 (732)
                      ...+.+++|+|++ ..|++++.|+.|++||+++++++..+.+|...|++++|+|++ ++|++++ |++|+|||++++   
T Consensus       226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---  302 (357)
T 4g56_B          226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---  302 (357)
T ss_dssp             CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---
T ss_pred             cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---
Confidence            3458999999975 567788999999999999999999999999999999999987 5788888 999999999886   


Q ss_pred             eeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCC
Q 004737          654 ECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +++.. ..|...|++++|+| ++.+|++++.|+.|++|++.+.
T Consensus       303 ~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          303 EVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             cEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            55544 46899999999998 7899999999999999999654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.1e-34  Score=312.72  Aligned_cols=266  Identities=15%  Similarity=0.210  Sum_probs=220.8

Q ss_pred             CCceeeeeecCCCc----eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          425 RDRVGRSAEVGKGF----TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       425 ~d~~~r~wd~~~g~----~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      .|..+++|+...+.    .......+.+|...|++++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|.+++|
T Consensus        47 ~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~  126 (343)
T 2xzm_R           47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF  126 (343)
T ss_dssp             TTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEE
T ss_pred             CCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEE
Confidence            35566777765432    23456778999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCCCC---------cEEEEEeCCCcEEEEECCCC
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE---------DLLCSCDNNSEIRYWSINNG  568 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspdg~---------~llaSgs~Dg~I~iWDl~t~  568 (732)
                      +|++++|++++.|++|++||+....  ....   .+|...|.+++|+|++.         .++++++.|+.|++||.. .
T Consensus       127 sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~  203 (343)
T 2xzm_R          127 SPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F  203 (343)
T ss_dssp             CSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T
T ss_pred             CCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C
Confidence            9999999999999999999998422  2222   37889999999999863         578899999999999954 5


Q ss_pred             eeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Q 004737          569 SCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWS  646 (732)
Q Consensus       569 ~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWD  646 (732)
                      .....+. +...+.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.+++|+|++.+++++.|+.|++||
T Consensus       204 ~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~  282 (343)
T 2xzm_R          204 QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFN  282 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred             ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEE
Confidence            5555555 456799999999999999999999999999954 33334443 55679999999999999888899999999


Q ss_pred             CCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          647 IGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       647 l~t~~~~~~i~~~~-----------~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +.+..... +..+.           .|...|.+++|+|++.+|++++.|+.|++|+++++
T Consensus       283 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          283 LMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             eCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            98764322 22222           56778999999999999999999999999998654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.3e-35  Score=308.39  Aligned_cols=278  Identities=17%  Similarity=0.245  Sum_probs=243.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc--
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--  526 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~--  526 (732)
                      |.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..  
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            456799999999999999998888888877665555555558999999999999999999998 99999999987542  


Q ss_pred             eeEEee--cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          527 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       527 ~~~~l~--~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~--~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      .+..+.  +|...|.+++|+|++ .++++++.|+.|++||+.+++  ....+. +...+.+++|+|++..+++++.|+.|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence            223333  789999999999986 566688889999999999877  444444 34568999999999999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      ++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++   ..+..+. +...+.+++|+|++.++++
T Consensus       166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~  241 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred             EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence            9999999999999999999999999999999999999 999999999887   5555543 6778999999999999999


Q ss_pred             EEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          681 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       681 gs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus       242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            9999999999999999888899999999999999999999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-36  Score=342.86  Aligned_cols=306  Identities=8%  Similarity=0.047  Sum_probs=237.4

Q ss_pred             CCCCCceeeeeecCCCce-eEEEEEecCCCCCeEEEEEcCC------CCEEEEEECCCcEEEEEcCCCeE----------
Q 004737          422 ADPRDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKAVLWCTESFTV----------  484 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~-~~~v~~l~~H~~~V~~lafSpd------g~~Lasgs~Dg~I~VWd~~t~~~----------  484 (732)
                      ..+.|..+++|++..+.. ......+.+|.+.|.+|+|+|+      +.+||+++.||+|+|||+.+++.          
T Consensus       178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~  257 (524)
T 2j04_B          178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK  257 (524)
T ss_dssp             ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred             cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence            356788999999877643 2233457789999999999997      57999999999999999986632          


Q ss_pred             -EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEE--EEcCCCCcEEEEEeCCCcEE
Q 004737          485 -KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL--DFHPSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       485 -~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl--~fspdg~~llaSgs~Dg~I~  561 (732)
                       ...+.+|...|++++|+++ ..|++|+.||+|++||++++..+...+.+|...|.+|  .|+|++..+|++|+.|++|+
T Consensus       258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred             ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence             2467889999999999986 4899999999999999997765667789999999999  46676557888999999999


Q ss_pred             EEECCCCeeeeEEeccC---CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737          562 YWSINNGSCAGVFKCQS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       562 iWDl~t~~~i~~~~~~~---~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs  638 (732)
                      +||+++++++..+..+.   .+.+++|+|++..+++++.|+.|++||++++.++..+.+|...|++|+|+|++.+|++|+
T Consensus       337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE
T ss_pred             EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE
Confidence            99999888776665432   478999999999999999999999999999988888889999999999999999999999


Q ss_pred             -CCeEEEEECCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCCeEEEEccCCCCeeEEEEe
Q 004737          639 -DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSLAAS  713 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl--~t~~~~~~~~h~~~V~sla~s  713 (732)
                       |++|++||+..... ......  ......+.+++|+|++..+ ...  +.+++|+.  .......+.+|...|.+++|+
T Consensus       417 ~Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~--~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs  492 (524)
T 2j04_B          417 ADGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKY-RID--SSYEVYPLTVNDVSKAKIDAHGINITCTKWN  492 (524)
T ss_dssp             TTTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEE-EEC--CCCCCCC-------------CCCSCCCEEEC
T ss_pred             CCCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeE-Ecc--CCceecccccCCcceeeecCCCceEEEEECC
Confidence             99999999865311 110000  0122357899999999844 222  22334433  233344788999999999999


Q ss_pred             CCCC---EEEEEECCCeEEEeC
Q 004737          714 TVNG---MVASASHDKCVKIWK  732 (732)
Q Consensus       714 pdg~---~LaSgs~DG~I~IWD  732 (732)
                      |++.   +|++|+.||.|+||+
T Consensus       493 p~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          493 ETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             CSTTTTTEEEEECTTSEEEEEE
T ss_pred             CCCCccHHHHhhccCceEEEEE
Confidence            9964   999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.2e-34  Score=320.34  Aligned_cols=280  Identities=18%  Similarity=0.302  Sum_probs=246.5

Q ss_pred             EEEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          441 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       441 ~~v~~l~~H~~~V-~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      .....+.+|.+.| +|+.|  ++++|++|+.||+|+|||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            3556788999885 66666  56799999999999999999999999999999999999999987 99999999999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCeeee-----------------------EEe
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK  575 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWDl~t~~~i~-----------------------~~~  575 (732)
                      |++++. .+..+.+|...|.+++|++. +..++++++.|+.|++||+.++....                       .+.
T Consensus       189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            999876 57888999999999999962 34778899999999999998765432                       222


Q ss_pred             -ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737          576 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG  653 (732)
Q Consensus       576 -~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~  653 (732)
                       +...+.+  +++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++   
T Consensus       268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---  342 (464)
T 3v7d_B          268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---  342 (464)
T ss_dssp             CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred             CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence             1223444  467789999999999999999999999999999999999999999999999999 999999999987   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .++..+..|...|.++.|+  +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus       343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            7888999999999999997  5789999999999999999988776667888899999999999999998 89999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-34  Score=311.52  Aligned_cols=260  Identities=21%  Similarity=0.334  Sum_probs=230.3

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC------eEEEEeccCCCceEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDV  498 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~V~~l  498 (732)
                      .|..+++|+..++..   ...+..|...|.+++|+|+|.+|++|+.|+.|++|++...      .....+..|...|.++
T Consensus        84 ~Dg~v~vWd~~~~~~---~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~  160 (354)
T 2pbi_B           84 QDGKVIVWDSFTTNK---EHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC  160 (354)
T ss_dssp             TTSEEEEEETTTCCE---EEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEE
T ss_pred             CCCeEEEEECCCCCc---ceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEE
Confidence            356777888766643   4557789999999999999999999999999999998643      3456677899999999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEec-
Q 004737          499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-  576 (732)
Q Consensus       499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-  576 (732)
                      +|+|++..|++++.|++|++||++++. .+..+.+|...|.+++|+|+. ..+|++|+.||.|++||+++++++..+.. 
T Consensus       161 ~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h  239 (354)
T 2pbi_B          161 SFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH  239 (354)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence            999999999999999999999999876 578899999999999999863 36888999999999999999999888874 


Q ss_pred             cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc
Q 004737          577 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG  653 (732)
Q Consensus       577 ~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h--~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~  653 (732)
                      ...|.+++|+|++..|++++.|+.|++||++..+.+..+..+  ...+.+++|+|++.+|++++ |+.|++||+.++   
T Consensus       240 ~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---  316 (354)
T 2pbi_B          240 ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---  316 (354)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---
T ss_pred             CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---
Confidence            466999999999999999999999999999998877766543  35789999999999999999 999999999887   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      ..+..+..|...|.+++|+|++.+|++++.|+.|+||+
T Consensus       317 ~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            67788889999999999999999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=309.61  Aligned_cols=287  Identities=17%  Similarity=0.265  Sum_probs=243.6

Q ss_pred             eEEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEEcCC-CeEE-EEeccCCCceEEEEEcCCCCeEEEEeCCC
Q 004737          440 FTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADR  514 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpd---g~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg  514 (732)
                      +..+..+.+|.+.|+|++|+|+   |++|++|+.|+.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.||
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            3456778999999999999999   69999999999999999997 5554 77889999999999999999999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~f--spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l  592 (732)
                      .|++||+.++.  ...+..|...|.+++|  ++++ .+|++++.|+.|++||+++++++..+..+..+.++.+.+  ..+
T Consensus       109 ~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~  183 (368)
T 3mmy_A          109 TAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMA  183 (368)
T ss_dssp             EEEEEETTTTE--EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEE
T ss_pred             cEEEEEcCCCC--ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Cee
Confidence            99999999865  3446779999999999  7775 567799999999999999999999999888777777765  588


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCE----EEEEe-CCeEEEEECCCCCCceeEEEeecCCC-
Q 004737          593 LAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN-  664 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~----Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~-  664 (732)
                      ++++.++.+.+||++.........  .+...+.++++.++...    +++++ |+.|++||++.......+..+..|.. 
T Consensus       184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence            999999999999999875443322  24556777777666554    77777 99999999988754345556666654 


Q ss_pred             -----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          665 -----------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       665 -----------~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                                 .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++.+|++++.|+..+.|
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence                       7999999999999999999999999999999887 677899999999999999999999998865444

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.8e-35  Score=311.77  Aligned_cols=277  Identities=14%  Similarity=0.145  Sum_probs=241.4

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEE
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV  518 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~I  518 (732)
                      +....+|.+.|++++|+|++++|++++.|+.|+|||+.+++   ....+..|...|++++|+|+++ +|++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            44566899999999999999999999999999999998876   3455568999999999999999 9999999999999


Q ss_pred             Eec-CCCCceeEEeec--CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEEeccCCeeEEEEe
Q 004737          519 WDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQ  586 (732)
Q Consensus       519 WDl-~s~~~~~~~l~~--h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---------~~~i~~~~~~~~i~~v~~s  586 (732)
                      ||+ .++.  ...+.+  |...|.+++|+| + .++++++.|+.|++||+++         ++++..+.+...+.+++|+
T Consensus        84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  159 (342)
T 1yfq_A           84 VDLIGSPS--FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             ECSSSSSS--EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             EEeccCCc--eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence            999 7754  477788  999999999999 4 6677999999999999987         7777777777889999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCC---CceeEEE
Q 004737          587 PRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIHE  658 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t-~~--~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~---~~~~i~~  658 (732)
                      +++  +++++.++.|++||+++ +.  .......|...|.+++|+| ++.+|++++ |+.|++|++....   .......
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            886  99999999999999998 43  3444556888999999999 999999999 9999999998751   0134455


Q ss_pred             eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCCCEEEEEECCCe
Q 004737          659 LSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKC  727 (732)
Q Consensus       659 ~~~~~~---------~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg~~LaSgs~DG~  727 (732)
                      +..|..         .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|.+++  |++.+|++++.||.
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            555544         9999999999999999999999999999999887 66777 99999999  99999999999998

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.1e-34  Score=304.32  Aligned_cols=251  Identities=19%  Similarity=0.289  Sum_probs=212.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--CeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEEE
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW  519 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~IW  519 (732)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+.++.+|.+.|++++|+++  +++|++|+.|++|+||
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45789999999999999999999999999999999974  4677899999999999999864  8999999999999999


Q ss_pred             ecCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCee--eeEEe-ccCCeeEEEEeCC------
Q 004737          520 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPR------  588 (732)
Q Consensus       520 Dl~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~--i~~~~-~~~~i~~v~~sp~------  588 (732)
                      |++++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++..  ...+. +...+.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998764 2356678899999999999972 36777999999999999987632  22333 4567999999997      


Q ss_pred             -------CCEEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEeCCC---CEEEEEe-CCeEEEEECCCCCCc
Q 004737          589 -------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKG  653 (732)
Q Consensus       589 -------g~~ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~V~sla~spdg---~~Lasgs-Dg~I~IWDl~t~~~~  653 (732)
                             +..|++++.|+.|++||++++.    ....+.+|...|.+++|+|++   .+|++++ |++|+|||++.....
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   4689999999999999998764    667888999999999999985   7899999 999999999875321


Q ss_pred             eeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          654 ECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       654 ~~i~~~--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      .....+  ..+...|.+++|+|++++|++++.|+.|++|+...
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            222233  45678899999999999999999999999999763

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5e-34  Score=313.83  Aligned_cols=262  Identities=22%  Similarity=0.366  Sum_probs=224.4

Q ss_pred             CceeeeeecCCCceeEEEEEecCC------------------CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPAS------------------TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST  487 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H------------------~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~  487 (732)
                      +..+++|++.++....   .+..|                  ...|++++|+|||++||+|+.|+.|+|||+.+++.+..
T Consensus        84 ~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~  160 (393)
T 1erj_A           84 NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI  160 (393)
T ss_dssp             BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            3456777777765433   23333                  33599999999999999999999999999999999999


Q ss_pred             eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          488 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       488 l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                      +.+|...|++++|+|++.+|++++.|++|++||+.++.. ...+. +...+.+++|+|.+..++++++.|+.|++||+++
T Consensus       161 ~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~  238 (393)
T 1erj_A          161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET  238 (393)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred             EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            999999999999999999999999999999999998653 44444 6678999999995567888999999999999999


Q ss_pred             CeeeeEEe--------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC------------eEEEEEcCCCCCEEEEEE
Q 004737          568 GSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKNQVHSVCW  627 (732)
Q Consensus       568 ~~~i~~~~--------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~------------~~i~~l~~h~~~V~sla~  627 (732)
                      ++++..+.        +...|.+++|+|++.+|++++.|+.|++||+++.            .+...+.+|...|.+++|
T Consensus       239 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  318 (393)
T 1erj_A          239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT  318 (393)
T ss_dssp             CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred             CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE
Confidence            98877662        3456999999999999999999999999999753            456678889999999999


Q ss_pred             eCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC------CCCEEEEEEcCCeEEEEECCCC
Q 004737          628 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       628 spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp------dg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      ++++.+|++++ |+.|++||+.++   .++..+.+|...|.+++|++      ++.+|++++.|+.|+||++...
T Consensus       319 ~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          319 TQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             CGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            99999999999 999999999987   67888889999999999986      6789999999999999997643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.1e-35  Score=318.63  Aligned_cols=279  Identities=13%  Similarity=0.103  Sum_probs=227.7

Q ss_pred             CCeEEEEEcCCCCEEEEEECCC-------cEEEEEcCCCeE----------EEEeccCCCceEEEEEcCCCCeEEEEe--
Q 004737          451 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFTV----------KSTLEEHTQWITDVRFSPSLSRLATSS--  511 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg-------~I~VWd~~t~~~----------~~~l~~h~~~V~~l~fspdg~~Lasgs--  511 (732)
                      -+|+||+|+||+++||+|+.|.       .|+||++.....          ...+..|...|.+++|+  ++.+++|+  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4799999999999999998643       599999875421          23467888899998875  45666654  


Q ss_pred             ---------CCCeEEEEecCCCCceeEEe--------ecCCcceEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCeeeeE
Q 004737          512 ---------ADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV  573 (732)
Q Consensus       512 ---------~Dg~I~IWDl~s~~~~~~~l--------~~h~~~V~sl~fspdg~~ll-aSgs~Dg~I~iWDl~t~~~i~~  573 (732)
                               .|+.|++|++......+...        ..+...+.+++|+|||..++ ++++.|++|++||+++++++..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                     47889999987655433322        23445689999999998764 4566799999999999999999


Q ss_pred             EeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-CC----eEEEEE
Q 004737          574 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS  646 (732)
Q Consensus       574 ~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-Dg----~I~IWD  646 (732)
                      +.+...|.+++|+|++.++++++ ++.+.+|+..++..+..  ...|...|.+++|+|++.++++++ |+    .+++|+
T Consensus       173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~  251 (365)
T 4h5i_A          173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS  251 (365)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred             eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence            99888999999999999888876 55677777777765543  445888999999999999999988 65    688899


Q ss_pred             CCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE-ccCCCCeeEEEEeCCCCEEEEEE
Q 004737          647 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-SAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       647 l~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~-~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      +..... ......+..|...|++++|+|++++|++++.|+.|+|||+.+++++ .+ .+|...|++++|+||+++||+|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred             cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence            876532 1234567788899999999999999999999999999999999988 43 58999999999999999999999


Q ss_pred             CCCeEEEeC
Q 004737          724 HDKCVKIWK  732 (732)
Q Consensus       724 ~DG~I~IWD  732 (732)
                      .|++|+|||
T Consensus       332 ~D~tvrvw~  340 (365)
T 4h5i_A          332 AANTIHIIK  340 (365)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCeEEEEE
Confidence            999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=315.32  Aligned_cols=301  Identities=19%  Similarity=0.342  Sum_probs=244.6

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEe-------------ccCC
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHT  492 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------------~~h~  492 (732)
                      ..+++|+...+.   ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+             .+|.
T Consensus        23 ~~~~v~~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           23 STRRVLGLELNK---DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHTEEECT---TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             CcceeeccccCc---ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            345666665543   3456788999999999999 9999999999999999999987654333             2599


Q ss_pred             CceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCe
Q 004737          493 QWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGS  569 (732)
Q Consensus       493 ~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~--~llaSgs~Dg~I~iWDl~t~~  569 (732)
                      ..|.+++|+| ++.+|++++.||.|++||+.++.. ...+. +...+.++.|++.+.  .++++++.|+.|++||+++++
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            9999999999 788999999999999999998653 44444 778899999998643  378899999999999999998


Q ss_pred             eeeEEe-ccCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCCe-EEEEE---------------cCCCCCEEEEEEeCCC
Q 004737          570 CAGVFK-CQSGATQMRFQPRLGR-ILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSG  631 (732)
Q Consensus       570 ~i~~~~-~~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~~-~i~~l---------------~~h~~~V~sla~spdg  631 (732)
                      .+..+. +...+.+++|+|++.+ +++++.||.|++||+++.. ++..+               ..|...|.+++|+|++
T Consensus       178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  257 (408)
T 4a11_B          178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG  257 (408)
T ss_dssp             CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred             eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence            888887 4567999999999884 8899999999999998764 44444               4688899999999999


Q ss_pred             CEEEEEe-CCeEEEEECCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCe
Q 004737          632 EYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV  707 (732)
Q Consensus       632 ~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~--~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V  707 (732)
                      .+|++++ |+.|++||+.++.........  ......+...........+++++.++.|++||+.+++.+ .+.+|...|
T Consensus       258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v  337 (408)
T 4a11_B          258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV  337 (408)
T ss_dssp             SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE
T ss_pred             CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE
Confidence            9999999 999999999987432211110  111122222233344566888889999999999999888 777899999


Q ss_pred             eEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          708 SSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       708 ~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++++|+|++.+|++++.||.|+|||
T Consensus       338 ~~~~~s~~~~~l~s~~~dg~i~iw~  362 (408)
T 4a11_B          338 DCCVFQSNFQELYSGSRDCNILAWV  362 (408)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCCeEEEEe
Confidence            9999999999999999999999996

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.1e-35  Score=307.43  Aligned_cols=286  Identities=18%  Similarity=0.215  Sum_probs=218.9

Q ss_pred             EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----eEEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEE
Q 004737          444 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR  517 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~  517 (732)
                      ..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++    +....+.+|...|++++|+|  ++.+|++++.||.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            356899999999999999999999999999999999876    56777889999999999999  699999999999999


Q ss_pred             EEecCCCC--------ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEe-------------
Q 004737          518 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK-------------  575 (732)
Q Consensus       518 IWDl~s~~--------~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~-------------  575 (732)
                      +||+.++.        ..+..+.+|...|.+++|+|+. ..++++++.|+.|++||+++++.+..+.             
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99998764        3467788999999999999982 3566688999999999998877654332             


Q ss_pred             -ccCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCC----CEEEEEe-CCeEEE
Q 004737          576 -CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRV  644 (732)
Q Consensus       576 -~~~~i~~v~~sp~---g~~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg----~~Lasgs-Dg~I~I  644 (732)
                       +...+.+++|+|+   +..+++++.++.+.+|+...+..  +..+.+|...|++++|+|++    .+|++++ |+.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence             3356899999997   89999999999998888887754  67788899999999999998    7899998 999999


Q ss_pred             EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE----cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEE
Q 004737          645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG----CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV  719 (732)
Q Consensus       645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs----~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~L  719 (732)
                      ||++....   ..........+....+.+....+..+.    ....+.+|+....+.+ .+.+|...|++++|+|++++|
T Consensus       245 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          245 FKITEKLS---PLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred             EeCCCCcC---ccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence            99987632   222222223333334444443333333    2335556665555555 677899999999999999999


Q ss_pred             EEEECCCeEEEeC
Q 004737          720 ASASHDKCVKIWK  732 (732)
Q Consensus       720 aSgs~DG~I~IWD  732 (732)
                      ++++.||.|+|||
T Consensus       322 ~s~~~dg~v~iw~  334 (351)
T 3f3f_A          322 SSAGDDGKVRLWK  334 (351)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEecCCCcEEEEe
Confidence            9999999999996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.9e-34  Score=325.79  Aligned_cols=294  Identities=16%  Similarity=0.280  Sum_probs=244.1

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCC---ceEEEEEcC
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSP  502 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~l~fsp  502 (732)
                      ..+.+|+  .+.   .+..+.+|...|++++|+|+++ +|++++.|+.|++||+.+++.+..+.+|..   .|++++|+|
T Consensus       142 ~~v~~~d--~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  216 (615)
T 1pgu_A          142 GVFISWD--SGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP  216 (615)
T ss_dssp             EEEEETT--TCC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred             cEEEEEE--CCC---cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC
Confidence            3555555  433   4667889999999999999998 899999999999999999999999999999   999999999


Q ss_pred             C-CCeEEEEeCCCeEEEEecCCCCceeEEe-e---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc
Q 004737          503 S-LSRLATSSADRTVRVWDTENPDYSLRTF-T---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ  577 (732)
Q Consensus       503 d-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l-~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~  577 (732)
                      + +++|++++.|+.|++||+.+++. +..+ .   .|...|.+++|+ ++ .++++++.|+.|++||+++++++..+..+
T Consensus       217 ~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  293 (615)
T 1pgu_A          217 DSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLD  293 (615)
T ss_dssp             TTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCE-eEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            9 99999999999999999998764 5666 5   899999999999 64 66778999999999999987766554432


Q ss_pred             -----CCee-----------------------------------------------------------------------
Q 004737          578 -----SGAT-----------------------------------------------------------------------  581 (732)
Q Consensus       578 -----~~i~-----------------------------------------------------------------------  581 (732)
                           ..+.                                                                       
T Consensus       294 ~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~  373 (615)
T 1pgu_A          294 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSN  373 (615)
T ss_dssp             TTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCS
T ss_pred             CCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccC
Confidence                 1111                                                                       


Q ss_pred             ---EEEEe----------------------------------CC------------------------------------
Q 004737          582 ---QMRFQ----------------------------------PR------------------------------------  588 (732)
Q Consensus       582 ---~v~~s----------------------------------p~------------------------------------  588 (732)
                         +++|.                                  |+                                    
T Consensus       374 ~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (615)
T 1pgu_A          374 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS  453 (615)
T ss_dssp             CEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred             ceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEE
Confidence               11110                                  00                                    


Q ss_pred             --CCEEEEEEc-CCeEEEEECCCCeEE-EEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-C
Q 004737          589 --LGRILAAAI-ENYISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-T  662 (732)
Q Consensus       589 --g~~ll~~s~-dg~I~IwDl~t~~~i-~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-~  662 (732)
                        +..+++++. |+.|++||+.+++.. ..+..|...|.+++|+|++++|++++ |+.|++||+.++   +++..+.. |
T Consensus       454 ~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h  530 (615)
T 1pgu_A          454 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFR  530 (615)
T ss_dssp             ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCC
T ss_pred             EcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCC
Confidence              334444555 666666666655444 45567899999999999999999999 999999999887   77777777 8


Q ss_pred             CCceEEEEEeC----------CCCEEEEEEcCCeEEEEECCCC-eEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          663 GNKFHSCVFHP----------TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       663 ~~~I~sl~fsp----------dg~~L~sgs~dg~I~IwDl~t~-~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      ...|.+++|+|          ++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|
T Consensus       531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~i  609 (615)
T 1pgu_A          531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKR  609 (615)
T ss_dssp             SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEE
T ss_pred             CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEE
Confidence            99999999999          9999999999999999999987 444 6779999999999999999 999999999999


Q ss_pred             eC
Q 004737          731 WK  732 (732)
Q Consensus       731 WD  732 (732)
                      ||
T Consensus       610 w~  611 (615)
T 1pgu_A          610 WN  611 (615)
T ss_dssp             EE
T ss_pred             Ee
Confidence            96

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-35  Score=329.51  Aligned_cols=280  Identities=19%  Similarity=0.275  Sum_probs=223.3

Q ss_pred             EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEe
Q 004737          445 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD  520 (732)
Q Consensus       445 ~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWD  520 (732)
                      ...+|...|+||+|+| ++++||+|+.||.|+|||+.+++.  ...+.+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd  193 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD  193 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence            4567899999999999 667999999999999999987654  344568999999999998 689999999999999999


Q ss_pred             cCCCCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCC-EEEEE
Q 004737          521 TENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAA  595 (732)
Q Consensus       521 l~s~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~-~ll~~  595 (732)
                      +++..  ...+.   .+...+.+++|+|++ .+|++|+.||.|++||++.. .+..+. +...|.+++|+|++. .++++
T Consensus       194 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          194 FKGNI--LRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             TTSCE--EEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             ccCCc--eeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEEe
Confidence            98643  33332   234567899999996 56779999999999999754 444444 456799999999876 56788


Q ss_pred             EcCCeEEEEECCCCeEEE---EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC------c
Q 004737          596 AIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------K  665 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~---~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~------~  665 (732)
                      +.|+.|++||+++.+...   ...+|...|++++|+|++.+|++++ |+.|+|||+.++   .+...+..|..      .
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~  346 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLT  346 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSC
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccce
Confidence            899999999998765432   3356899999999999999999999 999999999987   34444433321      2


Q ss_pred             eEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCeEE-EE-ccCCCCeeEE-EEeCCCCEEEEEECCCeEEE
Q 004737          666 FHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       666 I~sl~fspdg~~L~sgs~------------dg~I~IwDl~t~~~~-~~-~~h~~~V~sl-a~spdg~~LaSgs~DG~I~I  730 (732)
                      +..+.|+|++..++++..            ++.|++||..+++.+ .+ ..|...|.++ +|+|++.+|++|+ |+.|+|
T Consensus       347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i  425 (435)
T 4e54_B          347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI  425 (435)
T ss_dssp             CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred             eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence            344567777776666642            247999999999888 33 4788889887 6999999999876 889999


Q ss_pred             eC
Q 004737          731 WK  732 (732)
Q Consensus       731 WD  732 (732)
                      ||
T Consensus       426 W~  427 (435)
T 4e54_B          426 WS  427 (435)
T ss_dssp             CC
T ss_pred             EE
Confidence            97

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3e-33  Score=312.48  Aligned_cols=292  Identities=17%  Similarity=0.246  Sum_probs=251.5

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc--C
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS--P  502 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs--p  502 (732)
                      .|..+++|+..++.   .+..+.+|.+.|++++|++++ +|++|+.|++|+|||+++++.+..+.+|...|.+++|+  +
T Consensus       140 ~dg~i~vwd~~~~~---~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          140 DDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             TTSCEEEEETTTTE---EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESS
T ss_pred             CCCcEEEEECCCCc---EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCC
Confidence            35667888887774   466788999999999999988 99999999999999999999999999999999999998  5


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCce----------------------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~----------------------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      ++.+|++++.|++|++||+.+....                      ...+.+|...|.++...   ..++++++.|+.|
T Consensus       216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i  292 (464)
T 3v7d_B          216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH---GNIVVSGSYDNTL  292 (464)
T ss_dssp             SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEE---TTEEEEEETTSCE
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCC---CCEEEEEeCCCeE
Confidence            7889999999999999999876432                      45678899999888544   3577799999999


Q ss_pred             EEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737          561 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      ++||+++++++..+.. ...+.+++|+|++..+++++.|+.|++||+++++++..+.+|...|.+++|+  +.+|++++ 
T Consensus       293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~  370 (464)
T 3v7d_B          293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAA  370 (464)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEET
T ss_pred             EEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeC
Confidence            9999999999988874 5679999999999999999999999999999999999999999999999997  57888888 


Q ss_pred             CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--EccCCCCeeEEEEeCCC
Q 004737          639 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVN  716 (732)
Q Consensus       639 Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~--~~~h~~~V~sla~spdg  716 (732)
                      |+.|++||+.+..   ..... .+...+..++|++++.++++++ |+.|++||+.+++.+.  ...|...|.+++|+ ..
T Consensus       371 dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~  444 (464)
T 3v7d_B          371 DGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GK  444 (464)
T ss_dssp             TSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TT
T ss_pred             CCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CC
Confidence            9999999999863   33333 3566788899999999888888 8999999999999884  56889999999998 44


Q ss_pred             CEEEEEECCCeEEEe
Q 004737          717 GMVASASHDKCVKIW  731 (732)
Q Consensus       717 ~~LaSgs~DG~I~IW  731 (732)
                      .++++++.||.+.+|
T Consensus       445 ~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          445 TLVAAVEKDGQSFLE  459 (464)
T ss_dssp             EEEEEEEETTEEEEE
T ss_pred             EEEEEEEeCCeEEEE
Confidence            566666778866655

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.4e-34  Score=312.20  Aligned_cols=280  Identities=18%  Similarity=0.335  Sum_probs=240.9

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      ...+|...+.+.++++++..+++++.|+.|+|||+.+++....+.. |...|++++|+|++++|++|+.||.|++||+.+
T Consensus        86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence            3456776654433333345688888999999999999998877765 889999999999999999999999999999998


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      +. .+..+.+|...|.+++|++   .++++++.||.|++||++ ....+..+. +...+.+++|+|++..+++++.|+.|
T Consensus       166 ~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v  241 (401)
T 4aez_A          166 QT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV  241 (401)
T ss_dssp             CC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             Ce-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence            76 5778889999999999953   578899999999999998 455555555 45679999999999999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCC-CEEEEEe---CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg-~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      ++||+++++.+..+..|...|.+++|+|++ .++++++   |+.|++||+.++   .++..+. +...|.+++|+|++.+
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~  317 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSKE  317 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSSE
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCCe
Confidence            999999999999999999999999999976 5666654   899999999987   5566654 5678999999999999


Q ss_pred             EEEEE--cCCeEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          678 LLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       678 L~sgs--~dg~I~IwDl~t~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +++++  .|+.|++||+.+++..   .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       318 l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             EEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            99965  7999999999987655   4668999999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=343.38  Aligned_cols=181  Identities=13%  Similarity=0.102  Sum_probs=153.2

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+...+..    .....|...|++++|+| |++|++++.|++|+|||+.+++.+..+. |...|++++|+|+++
T Consensus        38 Dg~I~lw~~~~~~~----~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~  111 (902)
T 2oaj_A           38 TGEVHIYGQQQVEV----VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLD  111 (902)
T ss_dssp             TSEEEEECSTTCEE----EEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCS
T ss_pred             CCEEEEEeCCCcEE----EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCC
Confidence            34566666554432    22235888999999999 8899999999999999999999988886 778999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCcee----------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737          506 RLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  575 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~----------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~  575 (732)
                      +|++|+.||+|++||+++.....          ..+.+|.+.|++++|+|++..++++|+.|+.| +||+++++++..+.
T Consensus       112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~  190 (902)
T 2oaj_A          112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI  190 (902)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred             EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence            99999999999999999765321          23467899999999999866788899999999 99999999988876


Q ss_pred             cc-------------------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737          576 CQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  613 (732)
Q Consensus       576 ~~-------------------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~  613 (732)
                      .+                   ..|.+++|+|++.+|++++.|+.|++||+++++++.
T Consensus       191 ~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          191 YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            54                   569999999999999999999999999998776543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-33  Score=299.20  Aligned_cols=260  Identities=25%  Similarity=0.423  Sum_probs=229.8

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..++.   ....+.+|...|.+++|+|++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|+++
T Consensus        44 dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (312)
T 4ery_A           44 DKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN  120 (312)
T ss_dssp             TSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEeCCCcc---cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            4566777776664   3456789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCeeEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQM  583 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~~v  583 (732)
                      +|++++.|+.|++||++++. .+..+..|...|.+++|+|++ .++++++.|+.|++||+++++++..+..  ...+..+
T Consensus       121 ~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  198 (312)
T 4ery_A          121 LIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV  198 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEE
T ss_pred             EEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEE
Confidence            99999999999999999876 577888999999999999986 4666999999999999999988877643  3468899


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE--EEE-eCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737          584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS--VCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~s--la~-spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      +|+|++.++++++.|+.|++||+++++++..+.+|...+.+  ..| .+++.+|++++ |+.|++||+.+.   ..+..+
T Consensus       199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~  275 (312)
T 4ery_A          199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKL  275 (312)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEE
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhh
Confidence            99999999999999999999999999999999888765432  233 36788999988 999999999887   778889


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 004737          660 SCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT  693 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~  693 (732)
                      ..|...|.+++|+|++.++++++  .|+.|++|+..
T Consensus       276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999987  58899999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-34  Score=305.82  Aligned_cols=267  Identities=23%  Similarity=0.403  Sum_probs=209.9

Q ss_pred             CCceeeeeecCCCceeEEEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-------CCeEEEEeccCCCce
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQWI  495 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l-~~-H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-------t~~~~~~l~~h~~~V  495 (732)
                      .|..+++|+...+. +..+..+ .+ |.+.|++++|+|++++||+|+.|++|+|||++       ..+.+..+.+|...|
T Consensus        32 ~D~~i~lw~~~~~~-~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V  110 (330)
T 2hes_X           32 TDRKIKLVSVKYDD-FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV  110 (330)
T ss_dssp             SSSCEEEEECSSSC-CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CE
T ss_pred             CCCEEEEEEecCCC-eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE
Confidence            45667777776542 2233444 44 99999999999999999999999999999985       345677889999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEecCCCC---ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--ee
Q 004737          496 TDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SC  570 (732)
Q Consensus       496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~---~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~--~~  570 (732)
                      ++++|+|++++|++|+.|++|+|||+....   ..+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.++  ++
T Consensus       111 ~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~  189 (330)
T 2hes_X          111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWEC  189 (330)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeE
Confidence            999999999999999999999999995332   3456788999999999999996 56779999999999999876  56


Q ss_pred             eeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEcC-CCCCEEEEEEeCCCCEEEEEe
Q 004737          571 AGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG-HKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       571 i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~--------~~i~~l~~-h~~~V~sla~spdg~~Lasgs  638 (732)
                      +..+. +...|.+++|+|+  +..+++++.|+.|++||++.+        .+...+.. |...|.+++|++++ +|++++
T Consensus       190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~  268 (330)
T 2hes_X          190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG  268 (330)
T ss_dssp             EEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE
T ss_pred             EEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe
Confidence            66665 4457999999998  678999999999999998754        44555555 89999999999766 667777


Q ss_pred             -CCeEEEEECCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEECCC
Q 004737          639 -DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~-~I~sl~fsp--dg~~L~sgs~dg~I~IwDl~t  694 (732)
                       |+.|+|||..++...........|.. .|.+++|+|  ++.+|++++.|+.|+|||+++
T Consensus       269 ~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             CCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence             99999999876521112223356766 899999999  688999999999999999865

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=319.87  Aligned_cols=278  Identities=18%  Similarity=0.343  Sum_probs=230.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----------EEEEeccCC------------CceEEEEEcCCC
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL  504 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~------------~~V~~l~fspdg  504 (732)
                      .|.+.|+||+|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            367889999999999999999999999999999876           577888998            889999999998


Q ss_pred             --CeEEEEeCCCeEEEEecCCCCce--------------------------------------eEE-eecCCcceEEEEE
Q 004737          505 --SRLATSSADRTVRVWDTENPDYS--------------------------------------LRT-FTGHSTTVMSLDF  543 (732)
Q Consensus       505 --~~Lasgs~Dg~I~IWDl~s~~~~--------------------------------------~~~-l~~h~~~V~sl~f  543 (732)
                        .+|++++.|++|++||+.+....                                      .+. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998763321                                      112 3679999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCC-CeeeeEE--------eccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCCCeE--
Q 004737          544 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC--  611 (732)
Q Consensus       544 spdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~--------~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~~~--  611 (732)
                      +|++. +|++| .|+.|++||+++ +.++..+        .+...+.+++|+|++ ..|++++.|+.|++||+++++.  
T Consensus       186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99865 55577 699999999984 4454433        245669999999998 8999999999999999999876  


Q ss_pred             --EEEEcCCCC------------CEEEEEEeCCCCEEEEEeCCeEEEEECCC-CCCceeEEEeecCCCc-----------
Q 004737          612 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK-----------  665 (732)
Q Consensus       612 --i~~l~~h~~------------~V~sla~spdg~~LasgsDg~I~IWDl~t-~~~~~~i~~~~~~~~~-----------  665 (732)
                        +..+..|..            .|.+++|+|++++|++++++.|++||++. +   .++..+..|...           
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence              677887876            89999999999999999899999999987 4   444455555321           


Q ss_pred             ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccC---------------------------------CCCee
Q 004737          666 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS  708 (732)
Q Consensus       666 ----I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h---------------------------------~~~V~  708 (732)
                          +..++|+|++.+|++++.|+.|++||+.+++.+.+..|                                 ...|.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence                33489999999999999999999999999988765443                                 35688


Q ss_pred             EEEEeCCCCEEEEEECCCeEEEe
Q 004737          709 SLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       709 sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .++|+|++.+||+++.++ ++||
T Consensus       421 ~~~~~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             EEEECSSSSEEEEECSSC-EEEE
T ss_pred             EEEECCCCCEEEEEecce-eeee
Confidence            999999999999998887 6666

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.4e-33  Score=311.21  Aligned_cols=287  Identities=20%  Similarity=0.356  Sum_probs=254.5

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..++.   .+..+.+|.+.|++++|+  +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+  +.
T Consensus       138 dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~  210 (445)
T 2ovr_B          138 DNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EK  210 (445)
T ss_dssp             TSCEEEEETTTCC---EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred             CCcEEEEECCCCc---EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CC
Confidence            5667888887775   456788999999999997  6699999999999999999999999999999999999995  56


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  584 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~  584 (732)
                      +|++|+.||+|++||+.+++ .+..+.+|...|.++.|  ++ .++++++.||.|++||+++++++..+.. ...+.++.
T Consensus       211 ~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  286 (445)
T 2ovr_B          211 RVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ  286 (445)
T ss_dssp             EEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence            89999999999999999876 57788899999999999  33 5667899999999999999999988874 45688888


Q ss_pred             EeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--
Q 004737          585 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--  661 (732)
Q Consensus       585 ~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~--  661 (732)
                      |  ++..+++++.|+.|++||+++++++..+.+|...+.++.++  +.+|++++ |+.|++||++++   .++..+..  
T Consensus       287 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~  359 (445)
T 2ovr_B          287 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---QCLQTLQGPN  359 (445)
T ss_dssp             E--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECSTT
T ss_pred             E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC---cEEEEEccCC
Confidence            8  77899999999999999999999999999999999998875  56888888 999999999887   66667665  


Q ss_pred             -CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE-----ccCCCCeeEEEEeCCCCEEEEEECCCe----EEE
Q 004737          662 -TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAASTVNGMVASASHDKC----VKI  730 (732)
Q Consensus       662 -~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~-----~~h~~~V~sla~spdg~~LaSgs~DG~----I~I  730 (732)
                       |...|.+++|+  +.+|++++.|+.|++||+.+++.+ .+     ..|.+.|++++|+|++.+|++|+.||.    |.|
T Consensus       360 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v  437 (445)
T 2ovr_B          360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV  437 (445)
T ss_dssp             SCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred             CCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEE
Confidence             77889999995  578999999999999999999887 34     378899999999999999999999997    999


Q ss_pred             eC
Q 004737          731 WK  732 (732)
Q Consensus       731 WD  732 (732)
                      ||
T Consensus       438 ~d  439 (445)
T 2ovr_B          438 LD  439 (445)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3e-34  Score=359.40  Aligned_cols=304  Identities=21%  Similarity=0.377  Sum_probs=264.9

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC-
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-  502 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp-  502 (732)
                      +.|..+++|+..++.   .+..+.+|.+.|++++|+|++++||+++.|+.|+|||+.+++.+..+.+|...|.+++|+| 
T Consensus       634 ~~d~~i~vw~~~~~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~  710 (1249)
T 3sfz_A          634 GADKTLQVFKAETGE---KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNK  710 (1249)
T ss_dssp             ETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             eCCCeEEEEECCCCC---EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecC
Confidence            346678899988875   4566789999999999999999999999999999999999999999999999999999999 


Q ss_pred             -CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe------
Q 004737          503 -SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------  575 (732)
Q Consensus       503 -dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~------  575 (732)
                       ++.++++++.|+.|++||+.++. ....+.+|...|.+++|+|++. ++++++.||.|++||+.+++....+.      
T Consensus       711 ~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~  788 (1249)
T 3sfz_A          711 SNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFL  788 (1249)
T ss_dssp             SSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC-
T ss_pred             CCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceeccccccc
Confidence             55689999999999999999876 5778889999999999999964 66699999999999998776544332      


Q ss_pred             --------------------------------------------------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          576 --------------------------------------------------CQSGATQMRFQPRLGRILAAAIENYISILD  605 (732)
Q Consensus       576 --------------------------------------------------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD  605 (732)
                                                                        +...+.+++|+|++..+++++.++.|++||
T Consensus       789 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN  868 (1249)
T ss_dssp             -------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred             ccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence                                                              234578899999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc------e--------------------eEE-
Q 004737          606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------E--------------------CIH-  657 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~------~--------------------~i~-  657 (732)
                      +.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+....      .                    .+. 
T Consensus       869 ~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  948 (1249)
T 3sfz_A          869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL  948 (1249)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEE
T ss_pred             cCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEE
Confidence            999999999999999999999999999999999 999999997531000      0                    000 


Q ss_pred             -------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          658 -------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       658 -------~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                             ........+.+++|+|++.++++++.++.|++||+.+++.. .+.+|...|++++|+|++++|++++.||.|+
T Consensus       949 ~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~ 1028 (1249)
T 3sfz_A          949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQ 1028 (1249)
T ss_dssp             EEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEE
T ss_pred             EecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                   01123467899999999999999999999999999998877 6678999999999999999999999999999


Q ss_pred             EeC
Q 004737          730 IWK  732 (732)
Q Consensus       730 IWD  732 (732)
                      +||
T Consensus      1029 vwd 1031 (1249)
T 3sfz_A         1029 VWN 1031 (1249)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.5e-34  Score=325.92  Aligned_cols=294  Identities=18%  Similarity=0.308  Sum_probs=257.2

Q ss_pred             ceeeeeecCCCc-eeEEEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCcEEEEEcCCC--------eEEEEeccCCCc
Q 004737          427 RVGRSAEVGKGF-TFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLWCTESF--------TVKSTLEEHTQW  494 (732)
Q Consensus       427 ~~~r~wd~~~g~-~~~~v~~l~~H~~~-V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t~--------~~~~~l~~h~~~  494 (732)
                      ..+++|+..++. ....+..+.+|.+. |++++|+|  ++++||+|+.|+.|+|||+.++        +....+..|...
T Consensus        39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  118 (615)
T 1pgu_A           39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP  118 (615)
T ss_dssp             TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred             CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence            457778877651 11356778999999 99999999  9999999999999999999754        677888889999


Q ss_pred             eEEEEEcCCCCeEEEEeCC----CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          495 ITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs~D----g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      |.+++|+|++++|++++.+    +.|++||..  . .+..+.+|...|.+++|+|++..++++++.|+.|++||+.++++
T Consensus       119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~  195 (615)
T 1pgu_A          119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF  195 (615)
T ss_dssp             EEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred             EEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence            9999999999999999988    689999833  3 57788999999999999999887888999999999999999999


Q ss_pred             eeEEecc-C---CeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEE-c---CCCCCEEEEEEeCCCCEEEEEe-CC
Q 004737          571 AGVFKCQ-S---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---GHKNQVHSVCWNTSGEYLASVS-DE  640 (732)
Q Consensus       571 i~~~~~~-~---~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l-~---~h~~~V~sla~spdg~~Lasgs-Dg  640 (732)
                      +..+..+ .   .+.+++|+|+ +.++++++.|+.|++||+++++.+..+ .   .|...|.+++|+ ++.+|++++ |+
T Consensus       196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~  274 (615)
T 1pgu_A          196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA  274 (615)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS
T ss_pred             eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC
Confidence            9888744 4   6999999999 999999999999999999999999998 6   899999999999 999999999 99


Q ss_pred             eEEEEECCCCCCceeEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCC
Q 004737          641 LVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTV  715 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~i~~~~~~----~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spd  715 (732)
                      .|++||++++   .++..+..+    ...+.++.|. ++.++++++.++.|++||+.+++.+ .+..|...|.+++| |+
T Consensus       275 ~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          275 TIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             EEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             cEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence            9999999987   667666655    3667888886 8899999999999999999988776 67788888998888 77


Q ss_pred             CCEEEEEECCCeEEEeC
Q 004737          716 NGMVASASHDKCVKIWK  732 (732)
Q Consensus       716 g~~LaSgs~DG~I~IWD  732 (732)
                         |++++.||.|++||
T Consensus       350 ---l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          350 ---LISGSYDGRIMEWS  363 (615)
T ss_dssp             ---TEEEETTSCEEETT
T ss_pred             ---cEEECCCCeEEEEE
Confidence               77777788888775

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-33  Score=337.45  Aligned_cols=300  Identities=19%  Similarity=0.280  Sum_probs=263.7

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      +..+++|++.++.   .+..+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+.+|...|++++|+|++.
T Consensus        34 ~g~v~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~  110 (814)
T 3mkq_A           34 SGRVEIWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP  110 (814)
T ss_dssp             TSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCEEEEEECCCCc---eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCC
Confidence            4678888888875   4566789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQM  583 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v  583 (732)
                      +|++++.||.|++||+.++......+.+|...|.+++|+|++..++++++.||.|++||+.++.....+..+  ..+.++
T Consensus       111 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~  190 (814)
T 3mkq_A          111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV  190 (814)
T ss_dssp             EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred             EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence            999999999999999998766678889999999999999944578889999999999999988877766643  679999


Q ss_pred             EEeC--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          584 RFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       584 ~~sp--~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      +|+|  ++..+++++.||.|++||+++++++..+.+|...|.+++|+|++.+|++++ ||.|++||+.++   ..+..+.
T Consensus       191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~  267 (814)
T 3mkq_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLN  267 (814)
T ss_dssp             EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEee
Confidence            9999  899999999999999999999999999999999999999999999999999 999999999887   7788888


Q ss_pred             cCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCe----------EEE------------------------------
Q 004737          661 CTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TLT------------------------------  699 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~-L~sgs~dg~I~IwDl~t~~----------~~~------------------------------  699 (732)
                      .+...+.+++|+|++.. +++++.++.+.+|++....          .+.                              
T Consensus       268 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (814)
T 3mkq_A          268 VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSL  347 (814)
T ss_dssp             CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCC
T ss_pred             cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCcccee
Confidence            88899999999999874 3666677788899875432          111                              


Q ss_pred             ----EccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          700 ----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       700 ----~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                          ...+...+.+++|+|++++|++++ ||.+.||+
T Consensus       348 ~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          348 QTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             CCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             eeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence                123445688999999999999888 89999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-33  Score=354.13  Aligned_cols=286  Identities=21%  Similarity=0.349  Sum_probs=260.6

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ...+.+|.+.|++++|+|||++||+|+.||+|+|||+.+++.+..+.+|...|++++|+|++++|++++.|++|+|||+.
T Consensus       608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~  687 (1249)
T 3sfz_A          608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA  687 (1249)
T ss_dssp             SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      ++. .+..+.+|...|.+++|+|++ ..++++++.|+.|++||+.+++++..+.. ...+.+++|+|++..+++++.||.
T Consensus       688 ~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          688 TGK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             TCC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             CCc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence            876 578889999999999999963 46788999999999999999998887764 466999999999999999999999


Q ss_pred             EEEEECCCCeEEEEEcC-------------CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-cCCCce
Q 004737          601 ISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKF  666 (732)
Q Consensus       601 I~IwDl~t~~~i~~l~~-------------h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~-~~~~~I  666 (732)
                      |++||++++.....+..             +...+.+++|+|++.++++++++.|.+||+.++   ..+..+. .|...|
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTI  843 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCC
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCce
Confidence            99999999887766542             233788999999999999999999999999987   4444443 788999


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          667 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       667 ~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999999999999999999887 7789999999999999999999999999999996

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.2e-33  Score=309.79  Aligned_cols=270  Identities=22%  Similarity=0.405  Sum_probs=233.3

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe--ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      +++|+||++ ++||+|. |++|+|||+.+++....+  .+|...|++|+|+|+|++||+|+.||+|+|||+.+++ .+..
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~  184 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN  184 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence            567999976 4888776 899999999999988766  4678889999999999999999999999999999876 5888


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET  608 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t  608 (732)
                      +.+|...|.++.|++   .++++|+.|+.+++||..... .+..+. +...+..+.+.+++..+++++.|+.|++||..+
T Consensus       185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            999999999999873   578899999999999998643 344444 456689999999999999999999999999987


Q ss_pred             Ce----EEEEEcCCCCCEEEEEEeCCCC-EEEEE--e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          609 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       609 ~~----~i~~l~~h~~~V~sla~spdg~-~Lasg--s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      ++    .+.....|...|.+++|+|++. +++++  + |++|++||+.++   .++..+.. ...+.++.|++++..+++
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS  337 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence            64    3456777999999999999754 55554  3 899999999987   66666654 467899999999999988


Q ss_pred             EE--cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          681 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       681 gs--~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++  .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++.+|+||+.||+|+|||
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            76  6889999999999888 7889999999999999999999999999999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7.4e-34  Score=339.29  Aligned_cols=285  Identities=17%  Similarity=0.309  Sum_probs=254.8

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      ..+.+.+|.+.|+|++|+|++++||+++.||.|+|||+.+++.+..+.+|...|++++|+|++++|++++.||.|+|||+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEe-ccCCeeEEEEeC-CCCEEEEEEcC
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAIE  598 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~-~~~~i~~v~~sp-~g~~ll~~s~d  598 (732)
                      .++. .+..+.+|...|.+++|+|++. ++++++.||.|++||+.++ .+...+. +...+.+++|+| ++..+++++.|
T Consensus        85 ~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d  162 (814)
T 3mkq_A           85 NTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (814)
T ss_dssp             TTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred             CCCc-EEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence            9876 4778889999999999999975 5568999999999999886 5566665 446699999999 78899999999


Q ss_pred             CeEEEEECCCCeEEEEEcCCC-CCEEEEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          599 NYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~-~~V~sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      |.|++||+.++.....+..+. ..|.+++|+|  ++.+|++++ |+.|++||+.++   .++..+..|...|.+++|+|+
T Consensus       163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPT  239 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSS
T ss_pred             CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCC
Confidence            999999999887777666554 8999999999  999999999 999999999887   778888889999999999999


Q ss_pred             CCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCC--EEEEEECCCeEEEeC
Q 004737          675 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK  732 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~--~LaSgs~DG~I~IWD  732 (732)
                      +.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++.  ++++++ |+.+.+|+
T Consensus       240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~  299 (814)
T 3mkq_A          240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS  299 (814)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence            999999999999999999998877 7778889999999999987  455555 55566663

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-34  Score=317.10  Aligned_cols=265  Identities=19%  Similarity=0.327  Sum_probs=228.1

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-------EEEEeccCCCceEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-------VKSTLEEHTQWITD  497 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-------~~~~l~~h~~~V~~  497 (732)
                      .|..+++|+..++.   ....+.+|...|.+++|+|++++||+|+.|+.|+|||+.+..       ....+.+|.+.|.+
T Consensus        86 ~D~~v~iWd~~~~~---~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~  162 (380)
T 3iz6_a           86 QDGRLIVWNALTSQ---KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS  162 (380)
T ss_dssp             TTSEEEEEETTTTE---EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC
T ss_pred             CCCeEEEEECCCCc---cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE
Confidence            36677888887774   456788999999999999999999999999999999987532       34567899999999


Q ss_pred             EEEcCC-CCeEEEEeCCCeEEEEecCCCCceeEEe-----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCee
Q 004737          498 VRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSC  570 (732)
Q Consensus       498 l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l-----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~  570 (732)
                      +.|.|+ +..|++|+.|++|++||+.++.. +..+     .+|...|.+++|++.+..+|++|+.|+.|++||++ ..++
T Consensus       163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~  241 (380)
T 3iz6_a          163 CQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA  241 (380)
T ss_dssp             CBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred             EEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence            999996 45799999999999999998764 4444     67999999999998667888899999999999998 4566


Q ss_pred             eeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------CCEEEEEEeCCCCEEEEEe-CCe
Q 004737          571 AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------NQVHSVCWNTSGEYLASVS-DEL  641 (732)
Q Consensus       571 i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-------~~V~sla~spdg~~Lasgs-Dg~  641 (732)
                      +..+. +...|.+++|+|++.+|++++.|+.|++||++++..+..+..+.       ..|++++|+|++++|++++ ||.
T Consensus       242 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~  321 (380)
T 3iz6_a          242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD  321 (380)
T ss_dssp             CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred             eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence            66665 45679999999999999999999999999999999888876543       2489999999999999999 999


Q ss_pred             EEEEECCCCCCceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          642 VRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                      |++||+..+   +.+..+    ..|...|.+++|+|++.+|++++.|+.|++|++...+
T Consensus       322 i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          322 CYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            999999877   455554    5788999999999999999999999999999987653

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.4e-33  Score=291.32  Aligned_cols=270  Identities=21%  Similarity=0.390  Sum_probs=229.1

Q ss_pred             eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      +++|+||+++ +||+|. |++|+|||+++++.+..+.  +|...|++++|+|++++|++|+.||+|+|||+++++ .+..
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence            5789999986 777765 8999999999999887764  678889999999999999999999999999999876 5788


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET  608 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t  608 (732)
                      +.+|...+.++.+.+   .++++++.++.+++|+...... +..+. +...+..+.+.+++..+++++.|+.|++||+++
T Consensus       105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            899999998887763   5788999999999999987543 33443 456689999999999999999999999999987


Q ss_pred             Ce----EEEEEcCCCCCEEEEEEeCCCCEE-EE--Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          609 QV----CRLKLQGHKNQVHSVCWNTSGEYL-AS--VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       609 ~~----~i~~l~~h~~~V~sla~spdg~~L-as--gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      ++    .......+...|.++++++++..+ ..  ++ ++.|++||....   ... ....+...+..+.|++++..+++
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence            64    334556688899999999976533 33  33 789999999876   333 33446778999999999999887


Q ss_pred             EE--cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          681 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       681 gs--~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++  .|+.|++||+.+++.+ .+.+|.+.|++++|+|++++|+||+.||+|+|||
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            76  6889999999999988 7889999999999999999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.1e-35  Score=319.84  Aligned_cols=274  Identities=16%  Similarity=0.206  Sum_probs=234.1

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      .+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|+|||+.++. ....+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence            3558999999999999999999999999987776666666 445566789999999999999999999999755 46677


Q ss_pred             ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV  610 (732)
Q Consensus       532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~  610 (732)
                      .+|...|.+++|+|++. +|++++.|+.|++||+.+++++..+. +...|.+++|+|++..|++++.|+.|++||+++++
T Consensus       136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            89999999999999964 67799999999999999999888887 45679999999999999999999999999999999


Q ss_pred             EEEEEcC---CCCCEEEEE---------------------EeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCC
Q 004737          611 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN  664 (732)
Q Consensus       611 ~i~~l~~---h~~~V~sla---------------------~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-~~~~~  664 (732)
                      .+..+..   |...|.+++                     |+|++++|++++ |+.|++||++++   ..+..+ ..|..
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~  291 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC  291 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence            9988875   444555555                     478899999999 999999999887   444443 45778


Q ss_pred             ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCeE--EEEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          665 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       665 ~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~~~--~~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|.+++|+|++. +|++++.|+.|++||+.+++.  ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence            999999999998 999999999999999998753  25555 6778888865 5788999999999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=7.7e-33  Score=294.03  Aligned_cols=269  Identities=16%  Similarity=0.253  Sum_probs=234.3

Q ss_pred             CCCceeeeeecCCCc--eeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          424 PRDRVGRSAEVGKGF--TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~--~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      +.|..+++|++.++.  .......+.+|...|++++|+|++++|++++.|+.|++|+............+...+..+.++
T Consensus        58 s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (340)
T 4aow_A           58 SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS  137 (340)
T ss_dssp             ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe
Confidence            346677888876653  234567889999999999999999999999999999999999999998888899999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEec-cCC
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG  579 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~-~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~  579 (732)
                      +++.+|++++.|+.+++||+.........+.+|...|.+++|++++. .++++++.|+.|++||+++++++..+.. ...
T Consensus       138 ~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~  217 (340)
T 4aow_A          138 SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY  217 (340)
T ss_dssp             TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc
Confidence            99999999999999999999876655566788999999999998754 4677899999999999999999888764 457


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE-
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE-  658 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~-  658 (732)
                      |.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.|+.|++||+++.   ..+.. 
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~  293 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGK---IIVDEL  293 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCC---eEEEec
Confidence            99999999999999999999999999999999988874 56899999999998888777999999999876   33333 


Q ss_pred             --------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          659 --------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       659 --------~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                              ...|...|++++|+|++++|++++.|+.|+|||+++|.
T Consensus       294 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          294 KQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             cccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence                    34577889999999999999999999999999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.5e-33  Score=311.83  Aligned_cols=271  Identities=22%  Similarity=0.401  Sum_probs=241.7

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      +....+|...|+|++|  ++++|++|+.||.|+|||+.+++....+.+|...|++++|  ++++|++|+.||+|++||+.
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            3445578888999988  7899999999999999999999999999999999999999  78899999999999999999


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEEe-ccCCeeEEEEeCCCCEEEEEEcC
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i---~~~~-~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      ++. .+..+.+|...|.+++|++   .++++|+.||.|++||+.++...   ..+. +...+.+++|  ++..+++++.|
T Consensus       202 ~~~-~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d  275 (435)
T 1p22_A          202 TGE-MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD  275 (435)
T ss_dssp             SCC-EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred             CCc-EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence            876 5788889999999999974   47789999999999999987765   3333 4456888888  67899999999


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  677 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~  677 (732)
                      +.|++||+++++.+..+.+|...|.+++|+  +.+|++++ |+.|++||++++   .++..+..|...|.+++|  ++.+
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~  348 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR  348 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred             CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence            999999999999999999999999999994  67899888 999999999987   788889999999999999  7889


Q ss_pred             EEEEEcCCeEEEEECCCCe---------EE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          678 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t~~---------~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |++++.|+.|++||+.++.         .+ .+.+|...|.+++|  ++.+|++++.||.|+|||
T Consensus       349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            9999999999999997654         44 77899999999999  688899999999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.8e-33  Score=306.32  Aligned_cols=266  Identities=17%  Similarity=0.135  Sum_probs=233.2

Q ss_pred             CCceeeeeecCCCc---eeEEEEEecCCCCCeEEEEEcCC----C---CEEEEEECCCcEEEEEcCCCeE-----EEEec
Q 004737          425 RDRVGRSAEVGKGF---TFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKAVLWCTESFTV-----KSTLE  489 (732)
Q Consensus       425 ~d~~~r~wd~~~g~---~~~~v~~l~~H~~~V~~lafSpd----g---~~Lasgs~Dg~I~VWd~~t~~~-----~~~l~  489 (732)
                      .|..+++|+...+.   .+..+..+.+|...|++++|+|+    +   ++|++++.|+.|++||+.+++.     ...+.
T Consensus        34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~  113 (397)
T 1sq9_A           34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD  113 (397)
T ss_dssp             TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC
T ss_pred             CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec
Confidence            35667777776654   12345667799999999999999    9   9999999999999999998876     88888


Q ss_pred             cC-----CCceEEEEEc----CCCCe-EEEEeCCCeEEEEecCC------CCceeE-----Ee-------ecCCcceEEE
Q 004737          490 EH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR-----TF-------TGHSTTVMSL  541 (732)
Q Consensus       490 ~h-----~~~V~~l~fs----pdg~~-Lasgs~Dg~I~IWDl~s------~~~~~~-----~l-------~~h~~~V~sl  541 (732)
                      .|     ...|.+++|+    |++.+ |++++.||.|++||+.+      ... +.     .+       ..|...|.++
T Consensus       114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~  192 (397)
T 1sq9_A          114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSV  192 (397)
T ss_dssp             CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred             ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCcceeeeeeccccCCCCCceEE
Confidence            88     5899999999    99999 99999999999999987      443 33     55       4488999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-------cCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeE
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVC  611 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-------~~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~  611 (732)
                      +|+|++  ++++++.|+.|++||+++++.+..+..       ...+.+++|+|++.+|++++.|   +.|++||+++++.
T Consensus       193 ~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~  270 (397)
T 1sq9_A          193 DISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER  270 (397)
T ss_dssp             EECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             EECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence            999997  777999999999999999999988886       6789999999999999999999   9999999999999


Q ss_pred             EEEEcC-------------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee------cC---------
Q 004737          612 RLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS------CT---------  662 (732)
Q Consensus       612 i~~l~~-------------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~------~~---------  662 (732)
                      +..+..             |...|.+++|+|++.+|++++ |+.|++||+.++   .++..+.      .|         
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~  347 (397)
T 1sq9_A          271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDE  347 (397)
T ss_dssp             EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCT
T ss_pred             cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhcccc
Confidence            999998             999999999999999999999 999999999887   7777787      67         


Q ss_pred             ------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCe
Q 004737          663 ------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       663 ------~~~I~sl~fspdg----------~~L~sgs~dg~I~IwDl~t~~  696 (732)
                            ...|.+++|+|++          .+|++++.|+.|++||+.+++
T Consensus       348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence                  8999999999998          799999999999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=302.36  Aligned_cols=270  Identities=16%  Similarity=0.241  Sum_probs=229.4

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEEcCCCe-EEEEeccCCCceEEEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRF  500 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpd---g~~Lasgs~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~f  500 (732)
                      .|..+++|+..++.....  ...+|...|++++|+|+   +++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|
T Consensus        42 ~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~  119 (357)
T 3i2n_A           42 GTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDG  119 (357)
T ss_dssp             CCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEE
T ss_pred             CCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEee
Confidence            477889999988754322  22378999999999998   6999999999999999999988 88899999999999955


Q ss_pred             ------cCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCc----ceEEEE----EcCCCCcEEEEEeCCCcEEEEECC
Q 004737          501 ------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD----FHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       501 ------spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~----~V~sl~----fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                            +|++++|++++.|+.|++||+.++...+..+..|..    .|.+++    |+|++ .++++++.|+.|++||++
T Consensus       120 ~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~  198 (357)
T 3i2n_A          120 IGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLR  198 (357)
T ss_dssp             ESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETT
T ss_pred             ccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECc
Confidence                  678999999999999999999987756677766554    899998    56775 567789999999999999


Q ss_pred             CCeeeeEEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEE-----EcCCCCCEEEEEEeCCCC-EEEEE
Q 004737          567 NGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLK-----LQGHKNQVHSVCWNTSGE-YLASV  637 (732)
Q Consensus       567 t~~~i~~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t~~~i~~-----l~~h~~~V~sla~spdg~-~Lasg  637 (732)
                      +++......+...+.+++|+|   ++..+++++.||.|++||+++++....     +.+|...|.+++|+|++. +|+++
T Consensus       199 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          199 NMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             TTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             cCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence            999888887888999999999   899999999999999999987654433     348999999999999998 78888


Q ss_pred             e-CCeEEEEECCCCCCc----------------eeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeE
Q 004737          638 S-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKT  697 (732)
Q Consensus       638 s-Dg~I~IWDl~t~~~~----------------~~i~~~~~~~~~I~sl~fspdg~~L~-sgs~dg~I~IwDl~t~~~  697 (732)
                      + |+.|++||++.....                .++..+..|...|.+++|+|++.+|+ +++.|+.|++||+.+.+.
T Consensus       279 ~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          279 GGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             eCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            8 999999999865432                46778888999999999999999998 799999999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-33  Score=301.31  Aligned_cols=249  Identities=20%  Similarity=0.272  Sum_probs=205.7

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcC--CCCeEEEEeCCCeEEEEe
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  520 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fsp--dg~~Lasgs~Dg~I~IWD  520 (732)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  .+..+.+|.+.|++++|++  ++.+|++|+.|++|+|||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            467899999999999999999999999999999998875  4678899999999999986  489999999999999999


Q ss_pred             cCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEEe-ccCCeeEEEEeCC------
Q 004737          521 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPR------  588 (732)
Q Consensus       521 l~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i---~~~~-~~~~i~~v~~sp~------  588 (732)
                      ++++. .....+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+...   ..+. +...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98764 2456778999999999999983 467789999999999999875322   2222 3456888999987      


Q ss_pred             -----------CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEeCCC----CEEEEEe-CCeEEEEECCC
Q 004737          589 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       589 -----------g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~spdg----~~Lasgs-Dg~I~IWDl~t  649 (732)
                                 +.+|++++.|+.|++||++..   +++..+.+|...|.+++|+|++    .+|++++ |++|+|||+.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       368999999999999999865   5677888999999999999986    7899999 99999999986


Q ss_pred             CCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          650 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       650 ~~~~-~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      .... .....+..|...|.+++|+|++.+|++++.|+.|++|+..
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            3211 1222345578899999999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3e-32  Score=303.55  Aligned_cols=272  Identities=25%  Similarity=0.470  Sum_probs=242.3

Q ss_pred             EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          442 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       442 ~v~~l~~H~~~V-~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ....+.+|.+.| +|  +++++++|++|+.||.|+|||+.+++.+..+.+|...|++++|+  +.+|++|+.||+|++||
T Consensus       110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN  185 (445)
T ss_dssp             CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence            346688999875 55  44568999999999999999999999999999999999999997  56999999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      +.++. .+..+.+|...|.++.|++   ..+++++.||.|++||+.+++++..+.. ...+.++.|  ++..+++++.|+
T Consensus       186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  259 (445)
T 2ovr_B          186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF  259 (445)
T ss_dssp             TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred             CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence            99875 5788889999999999973   4677999999999999999998888764 456888888  678999999999


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      .|++||+++++++..+.+|...|.+++|  ++.+|++++ |+.|++||++++   .++..+..|...+.++.++  +.++
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l  332 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL  332 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence            9999999999999999999999999999  788999998 999999999987   7788888888888888774  5689


Q ss_pred             EEEEcCCeEEEEECCCCeEE-EEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          679 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~~~~-~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++++.|+.|++||+.+++.+ .+..   |...|.+++|+  +++|++++.||.|+|||
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            99999999999999998887 5544   88899999995  68999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-32  Score=325.40  Aligned_cols=267  Identities=16%  Similarity=0.268  Sum_probs=227.6

Q ss_pred             CCCCceeeeeecCCCce--eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          423 DPRDRVGRSAEVGKGFT--FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~--~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      .+.|..+++|+..++..  ......+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|
T Consensus       401 ~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~  480 (694)
T 3dm0_A          401 ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF  480 (694)
T ss_dssp             EETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             EeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEE
Confidence            34567778887765421  2345678999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCCCCceeEE---eecCCcceEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEEec
Q 004737          501 SPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC  576 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s~~~~~~~---l~~h~~~V~sl~fspdg~-~llaSgs~Dg~I~iWDl~t~~~i~~~~~  576 (732)
                      +|++++|++|+.|++|+|||+.... ....   ..+|...|.+++|+|++. .++++++.|+.|++||++++++...+..
T Consensus       481 s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~  559 (694)
T 3dm0_A          481 SLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG  559 (694)
T ss_dssp             CTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            9999999999999999999987532 2222   246889999999999863 5788999999999999999998888764


Q ss_pred             -cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCcee
Q 004737          577 -QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC  655 (732)
Q Consensus       577 -~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~  655 (732)
                       ...|.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+++.|+.|+|||+++.   .+
T Consensus       560 h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~---~~  635 (694)
T 3dm0_A          560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESK---SI  635 (694)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTT---EE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCC---CC
Confidence             4569999999999999999999999999999999888876 456899999999999999988889999999887   44


Q ss_pred             EEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          656 IHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       656 i~~~~~~-------------------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      +..+..+                   ...+.+++|+|++++|++++.|+.|+|||+..
T Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          636 VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            4444321                   12378899999999999999999999999853

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-33  Score=337.95  Aligned_cols=306  Identities=12%  Similarity=0.048  Sum_probs=235.5

Q ss_pred             CCCceeeeeecCCCceeEEE---------EEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEeccC--
Q 004737          424 PRDRVGRSAEVGKGFTFTEF---------QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH--  491 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v---------~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--  491 (732)
                      ..|..+++|+..++... ..         ..+.+|.+.|++++|+|+ +.+|++|+.|+.| |||+++++.+..+..|  
T Consensus       117 s~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~  194 (902)
T 2oaj_A          117 LQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELP  194 (902)
T ss_dssp             ETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBC
T ss_pred             cCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccC
Confidence            45778899998877532 11         245789999999999996 5789999999999 9999999998888765  


Q ss_pred             ----------------CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE-Ee---ec-------------CCcce
Q 004737          492 ----------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF---TG-------------HSTTV  538 (732)
Q Consensus       492 ----------------~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~-~l---~~-------------h~~~V  538 (732)
                                      ...|++++|+|++.+|++++.||+|++||+++++.... .+   ..             |...|
T Consensus       195 ~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V  274 (902)
T 2oaj_A          195 PFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKI  274 (902)
T ss_dssp             TTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred             CcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence                            57799999999999999999999999999988764221 12   11             34578


Q ss_pred             EEEEEcC----CCCcEEEEEeCC---------------------------------------------------------
Q 004737          539 MSLDFHP----SKEDLLCSCDNN---------------------------------------------------------  557 (732)
Q Consensus       539 ~sl~fsp----dg~~llaSgs~D---------------------------------------------------------  557 (732)
                      ++++|++    ++..++++|+.|                                                         
T Consensus       275 ~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  354 (902)
T 2oaj_A          275 SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQ  354 (902)
T ss_dssp             EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSS
T ss_pred             eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCC
Confidence            9999953    333556565433                                                         


Q ss_pred             -------------------CcEEEEECCCCeeeeE-------Ee-ccCCee-----------------------------
Q 004737          558 -------------------SEIRYWSINNGSCAGV-------FK-CQSGAT-----------------------------  581 (732)
Q Consensus       558 -------------------g~I~iWDl~t~~~i~~-------~~-~~~~i~-----------------------------  581 (732)
                                         +.|++||+.++.....       +. ++..++                             
T Consensus       355 sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~  434 (902)
T 2oaj_A          355 SPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGG  434 (902)
T ss_dssp             CSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCS
T ss_pred             CCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCC
Confidence                               3344444433321110       00 001122                             


Q ss_pred             -----EEEEeCCCCEEEEEEcCCeEEEEECCCCeE----EEE--Ec-----CCCCCEEEEEEeCCCCEEEEEe-CCeEEE
Q 004737          582 -----QMRFQPRLGRILAAAIENYISILDVETQVC----RLK--LQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRV  644 (732)
Q Consensus       582 -----~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~----i~~--l~-----~h~~~V~sla~spdg~~Lasgs-Dg~I~I  644 (732)
                           .++|+|++..+++++.|+.|++||+.++..    ...  +.     +|...|.+|+|+|++++|++++ |++|+|
T Consensus       435 ~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~l  514 (902)
T 2oaj_A          435 VRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVL  514 (902)
T ss_dssp             BCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEE
Confidence                 345578888999999999999999987631    111  22     7889999999999999999999 999999


Q ss_pred             EECCCCCC------------------------------------------ceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737          645 WSIGSGSK------------------------------------------GECIHELSCTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       645 WDl~t~~~------------------------------------------~~~i~~~~~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      ||+.++..                                          ..++..+..|...|++++|+|+| +|++++
T Consensus       515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs  593 (902)
T 2oaj_A          515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAY  593 (902)
T ss_dssp             EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEE
T ss_pred             EEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEe
Confidence            99976521                                          13467788899999999999999 999999


Q ss_pred             cCCeEEEEECCCCeEEE------E-ccCCCCeeEEEEe-----CCC---CEEEEEECCCeEEEeC
Q 004737          683 CYETLELWNMTENKTLT------L-SAHDKLVSSLAAS-----TVN---GMVASASHDKCVKIWK  732 (732)
Q Consensus       683 ~dg~I~IwDl~t~~~~~------~-~~h~~~V~sla~s-----pdg---~~LaSgs~DG~I~IWD  732 (732)
                      .|++|+|||+++...+.      + .+|.+.|++++|+     ||+   .+|++|+.|++|++||
T Consensus       594 ~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd  658 (902)
T 2oaj_A          594 AAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK  658 (902)
T ss_dssp             TTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred             CCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence            99999999998887652      2 2789999999999     885   7999999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.2e-33  Score=292.59  Aligned_cols=247  Identities=19%  Similarity=0.358  Sum_probs=210.2

Q ss_pred             EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEE
Q 004737          486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW  563 (732)
Q Consensus       486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iW  563 (732)
                      ..+.+|.+.|++++|+|++++||+|+.|++|+|||+.... ..+..+.+|.+.|.+++|+++ ...+|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            4567899999999999999999999999999999997532 356789999999999999864 24688899999999999


Q ss_pred             ECCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEeCC------
Q 004737          564 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------  630 (732)
Q Consensus       564 Dl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~V~sla~spd------  630 (732)
                      |+++++  .+..+. +...|.+++|+|+  +..|++++.|+.|++||+++..  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  344444 4567999999997  7899999999999999998763  24567789999999999997      


Q ss_pred             -------CCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--
Q 004737          631 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--  696 (732)
Q Consensus       631 -------g~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~t~~--  696 (732)
                             +++|++++ |+.|++||+++... ......+.+|...|.+++|+|++   .+|++++.|+.|+|||+.+..  
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   57899998 99999999987642 22566788999999999999985   789999999999999997642  


Q ss_pred             --EEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          697 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       697 --~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                        ...+  ..|...|.+++|+|++++|++++.||.|+||+
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence              1223  46888999999999999999999999999995

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.1e-33  Score=298.46  Aligned_cols=264  Identities=17%  Similarity=0.235  Sum_probs=228.0

Q ss_pred             ceeeeeecCCCceeEEEEEec--CCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          427 RVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~--~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      ..+++|+..++.....+..+.  .|...|++++|+|+    +++|++|+.|+.|+|||+.+++.+..+.+|...|++++|
T Consensus        44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~  123 (366)
T 3k26_A           44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF  123 (366)
T ss_dssp             TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred             CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence            367889988877666665544  38899999999999    679999999999999999999999999999999999999


Q ss_pred             cC-CCCeEEEEeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-
Q 004737          501 SP-SLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-  575 (732)
Q Consensus       501 sp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-  575 (732)
                      +| ++.+|++++.||.|++||+.++. .+..+   .+|...|.+++|+|++ .+|++++.|+.|++||+++++....+. 
T Consensus       124 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~  201 (366)
T 3k26_A          124 HPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKE  201 (366)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTTTE-EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCeEEEEEeecCe-EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccce
Confidence            99 89999999999999999999865 45555   6899999999999986 456688899999999999876554332 


Q ss_pred             ----------------------------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------------EEE
Q 004737          576 ----------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRL  613 (732)
Q Consensus       576 ----------------------------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--------------~i~  613 (732)
                                                  +...+.+++|+  +..+++++.|+.|++||+++..              .+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence                                        55679999998  6799999999999999998763              477


Q ss_pred             EEcCCCCCEEEEEEeCC--CCEEEEEe-CCeEEEEECCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeE
Q 004737          614 KLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETL  687 (732)
Q Consensus       614 ~l~~h~~~V~sla~spd--g~~Lasgs-Dg~I~IWDl~t~~~~~-~i~~~~~~--~~~I~sl~fspdg~~L~sgs~dg~I  687 (732)
                      .+..|...|.+++|+|+  +.+|++++ ||.|++||+.++.... ....+..|  ...|.+++|+|++++|++++.|+.|
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  359 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI  359 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence            88889999999999999  99999999 9999999999875432 55566666  6899999999999999999999999


Q ss_pred             EEEECCC
Q 004737          688 ELWNMTE  694 (732)
Q Consensus       688 ~IwDl~t  694 (732)
                      ++||+.+
T Consensus       360 ~iwd~~~  366 (366)
T 3k26_A          360 WRWDRLR  366 (366)
T ss_dssp             EEEEC--
T ss_pred             EEEEecC
Confidence            9999853

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-32  Score=296.06  Aligned_cols=252  Identities=21%  Similarity=0.315  Sum_probs=217.1

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEE
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV  518 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~I  518 (732)
                      +..+.+|.+.|++++|+|++++||+|+.|+.|+|||+.  +++.+..+.+|...|++++|+++  +.+|++++.||.|+|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45688999999999999999999999999999999998  66777889999999999999987  999999999999999


Q ss_pred             EecCCCCc-eeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeee--EE-eccCCeeEEEEeC------
Q 004737          519 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAG--VF-KCQSGATQMRFQP------  587 (732)
Q Consensus       519 WDl~s~~~-~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i~--~~-~~~~~i~~v~~sp------  587 (732)
                      ||+.++.. ....+..|...|.+++|+|+. ..++++++.|+.|++||++.+....  .+ .+...+.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            99998652 456778899999999999983 3567789999999999998874332  22 3456799999999      


Q ss_pred             -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEeCC---CCEEEEEe-CCeEEEEECCCCCC
Q 004737          588 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       588 -------~g~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~V~sla~spd---g~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                             ++..+++++.|+.|++||++++    .....+.+|...|.+++|+|+   +.+|++++ |+.|++||++++..
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~  243 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  243 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence                   6899999999999999999875    355678889999999999999   89999999 99999999998643


Q ss_pred             ceeEEEee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          653 GECIHELS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       653 ~~~i~~~~--~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      ........  .+...|.+++|+|++.+|++++.|+.|++|++..
T Consensus       244 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          244 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             CCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             cceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            22333333  3778899999999999999999999999999873

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.3e-32  Score=298.60  Aligned_cols=267  Identities=17%  Similarity=0.242  Sum_probs=229.4

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      .|..+++|+..++......  ...|...|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|  ++
T Consensus       111 ~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~  186 (401)
T 4aez_A          111 LERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NR  186 (401)
T ss_dssp             ETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ET
T ss_pred             CCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CC
Confidence            4567888988887643322  2238999999999999999999999999999999999999999999999999999  56


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEE
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM  583 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v  583 (732)
                      .+|++++.||.|++||++........+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.+..+. +...+.++
T Consensus       187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~  265 (401)
T 4aez_A          187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAV  265 (401)
T ss_dssp             TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEE
T ss_pred             CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEE
Confidence            7999999999999999997666788899999999999999986 566799999999999999998887775 45679999


Q ss_pred             EEeCCCCEEEEEE---cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEE
Q 004737          584 RFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       584 ~~sp~g~~ll~~s---~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~  657 (732)
                      +|+|++..+++.+   .|+.|++||+++++++..+. +...|.+++|+|++.+|++++   |+.|++||+.++.. ....
T Consensus       266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-~~~~  343 (401)
T 4aez_A          266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-TKQV  343 (401)
T ss_dssp             EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-EEEE
T ss_pred             EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-eeEE
Confidence            9999876666544   59999999999999988886 678899999999999999843   89999999987522 3444


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      .+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            56788999999999999999999999999999999998876

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-31  Score=297.24  Aligned_cols=266  Identities=18%  Similarity=0.283  Sum_probs=230.9

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      .|..+++|+..+|.... +..+.+|...|+||+|+|||++||+|+.|+.|+|||+++++.+..+.+|...|.+++|+  +
T Consensus       123 ld~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~  199 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S  199 (420)
T ss_dssp             ETTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T
T ss_pred             eCCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--C
Confidence            36788999999886433 34567899999999999999999999999999999999999999999999999998885  6


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----e-EEeccCC
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----G-VFKCQSG  579 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i----~-~~~~~~~  579 (732)
                      .+|++|+.|+.+++||.......+..+.+|...+..+.|+|++ .++++++.|+.|++||..+++..    . ...+...
T Consensus       200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~  278 (420)
T 4gga_A          200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA  278 (420)
T ss_dssp             TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred             CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence            7999999999999999998877788999999999999999996 56669999999999999876532    2 2234567


Q ss_pred             eeEEEEeCCCCEEE-EE--EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCc
Q 004737          580 ATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKG  653 (732)
Q Consensus       580 i~~v~~sp~g~~ll-~~--s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~  653 (732)
                      |.+++|+|.+..++ ++  +.|+.|++||+.++.+...+.. ...+.++.|++++..+++++   |+.|+|||+.++   
T Consensus       279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---  354 (420)
T 4gga_A          279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---  354 (420)
T ss_dssp             EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---
T ss_pred             eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---
Confidence            99999999766554 33  3589999999999999988875 46789999999999888764   789999999987   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      .++..+.+|...|++++|+|++.+|++++.|++|+|||+.+....
T Consensus       355 ~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            788899999999999999999999999999999999999776544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.1e-32  Score=291.44  Aligned_cols=269  Identities=17%  Similarity=0.225  Sum_probs=227.6

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE--eccCCCceEEEEEcCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPS  503 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspd  503 (732)
                      +..+++|+..++. +..+..+.+|...|++++|+|++++|++++.|+.|++||+++++....  +..|...|.+++|+|+
T Consensus        29 d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           29 NHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             SSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence            5677888877763 346777889999999999999999999999999999999998875544  4679999999999999


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCc---eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC--------------
Q 004737          504 LSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--------------  566 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~---~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~--------------  566 (732)
                      +++|++++.|+.|++||++....   ......+|...|.+++|+|++ .++++++.|+.|++||++              
T Consensus       108 ~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  186 (372)
T 1k8k_C          108 EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG  186 (372)
T ss_dssp             SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTB
T ss_pred             CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccc
Confidence            99999999999999999998663   233446789999999999986 566688999999999954              


Q ss_pred             ----CCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCe
Q 004737          567 ----NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL  641 (732)
Q Consensus       567 ----t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~  641 (732)
                          .++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++.+|+++.|+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~  266 (372)
T 1k8k_C          187 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCF  266 (372)
T ss_dssp             SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSS
T ss_pred             cccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCe
Confidence                567777775 446699999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEECCC--CC-----------------------------CceeE------EEe-ecCCCceEEEEEe-CCC---CEEE
Q 004737          642 VRVWSIGS--GS-----------------------------KGECI------HEL-SCTGNKFHSCVFH-PTF---PSLL  679 (732)
Q Consensus       642 I~IWDl~t--~~-----------------------------~~~~i------~~~-~~~~~~I~sl~fs-pdg---~~L~  679 (732)
                      |++|++.+  +.                             .....      ..+ ..|...|.+++|. +++   .+|+
T Consensus       267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~  346 (372)
T 1k8k_C          267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC  346 (372)
T ss_dssp             CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred             EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence            99999987  31                             00110      222 3788999999866 666   8999


Q ss_pred             EEEcCCeEEEEECCCCe
Q 004737          680 VIGCYETLELWNMTENK  696 (732)
Q Consensus       680 sgs~dg~I~IwDl~t~~  696 (732)
                      +++.|+.|++||+.+++
T Consensus       347 s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          347 TTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEETTSEEEEEEHHHHH
T ss_pred             EecCCCceEEEEecChh
Confidence            99999999999986643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-31  Score=284.74  Aligned_cols=262  Identities=14%  Similarity=0.154  Sum_probs=232.6

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..++.   .+..+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+..+. |...|.+++|+|++.
T Consensus        53 dg~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  128 (369)
T 3zwl_B           53 DSSASVWYSLNGE---RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGN  128 (369)
T ss_dssp             SSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSS
T ss_pred             CCEEEEEeCCCch---hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCC
Confidence            4567788877764   456788999999999999999999999999999999999999998887 888999999999999


Q ss_pred             eEEEEeCC-----CeEEEEecCCCCc----------eeEEeecCCc--ceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-
Q 004737          506 RLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-  567 (732)
Q Consensus       506 ~Lasgs~D-----g~I~IWDl~s~~~----------~~~~l~~h~~--~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-  567 (732)
                      +|++++.+     +.|++||+.....          ....+..|..  .+.+++|+|++. ++++++.||.|++||+++ 
T Consensus       129 ~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~  207 (369)
T 3zwl_B          129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN  207 (369)
T ss_dssp             EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT
T ss_pred             EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC
Confidence            99999999     9999999986542          2345556666  899999999865 566888999999999998 


Q ss_pred             CeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-----
Q 004737          568 GSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-----  640 (732)
Q Consensus       568 ~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-----  640 (732)
                      .+.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.+..+. +...+.+++|+|++.++++++ ++     
T Consensus       208 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  286 (369)
T 3zwl_B          208 YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT  286 (369)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred             cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence            67777776 45679999999999999999999999999999999988887 788999999999999999988 66     


Q ss_pred             ---------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          641 ---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       641 ---------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                               .|++||+.++   ..+..+..|...|.+++|+|++++|++++.|+.|++|++..+.
T Consensus       287 ~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          287 TTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             --------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             EEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence                     8999999887   7788888999999999999999999999999999999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-32  Score=302.92  Aligned_cols=278  Identities=15%  Similarity=0.241  Sum_probs=235.4

Q ss_pred             CeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCe----EEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC
Q 004737          452 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       452 ~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~----~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      ...+++++|+...+ ++++.||.|+||++....    .+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            35568999877544 457889999999997642    3345778999999999999 99999999999999999999863


Q ss_pred             ------ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE--e-ccCCeeEEEEeCCCCEEEEEE
Q 004737          526 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K-CQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       526 ------~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~--~-~~~~i~~v~~sp~g~~ll~~s  596 (732)
                            ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++++..+  . +...+.+++|+|++..|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  3467889999999999999998788889999999999999999999888  3 456799999999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEE-cCCCCC-EEEEEEeCCCCEEEEE---e-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737          597 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       597 ~dg~I~IwDl~t~~~i~~l-~~h~~~-V~sla~spdg~~Lasg---s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~  670 (732)
                      .|+.|++||+++++.+..+ ..|.+. +.+++|+|++.+|+++   + |+.|++||+++.........+ .+...+.+++
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~  274 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPF  274 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEE
Confidence            9999999999999999888 678776 8999999999999998   5 899999999986532223222 4567799999


Q ss_pred             EeCCCCEEEEEE-cCCeEEEEECCCCe--EEEEc--cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          671 FHPTFPSLLVIG-CYETLELWNMTENK--TLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       671 fspdg~~L~sgs-~dg~I~IwDl~t~~--~~~~~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |+|++.+|++++ .|+.|++||+.+++  ...+.  .|...|.+++|+|++.++++  .|+.+++|+
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            999999997665 69999999999887  33333  36699999999999988774  567899995

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3e-31  Score=292.89  Aligned_cols=296  Identities=9%  Similarity=0.050  Sum_probs=249.4

Q ss_pred             eeeecCCC-ceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-----EeccCCCceEEEEEcCC
Q 004737          430 RSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPS  503 (732)
Q Consensus       430 r~wd~~~g-~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~V~~l~fspd  503 (732)
                      ++|.++.. ..+..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...|.+++|+++
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~  180 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH  180 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred             EEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence            45544331 2334555566554 46699999988788888889999999999998887     34578899999999999


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEE
Q 004737          504 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM  583 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v  583 (732)
                      +.++++++.|+.|++||++++. .+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.++
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  259 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGL  259 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEE
Confidence            9999999999999999999866 467777899999999999998888888888999999999999998888877789999


Q ss_pred             EEeCCCCEEEEEE--------cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEE-e-CCeEEEEECCCCCCc
Q 004737          584 RFQPRLGRILAAA--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKG  653 (732)
Q Consensus       584 ~~sp~g~~ll~~s--------~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasg-s-Dg~I~IWDl~t~~~~  653 (732)
                      +|+|++..+++++        .|+.|++||+++++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++   
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---  335 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---  335 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---
Confidence            9999999999988        47899999999998777663 56689999999999866554 5 899999999876   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM  718 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~---------------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~  718 (732)
                      +.+..+. +...+.+++|+|+++++++++.               ||.|++||+.+++.+....+...+.+++|+|++++
T Consensus       336 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  414 (433)
T 3bws_A          336 KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRY  414 (433)
T ss_dssp             EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCE
T ss_pred             cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCE
Confidence            5555554 5678999999999999998887               46999999999998855555678999999999999


Q ss_pred             EEEEEC-CCeEEEeC
Q 004737          719 VASASH-DKCVKIWK  732 (732)
Q Consensus       719 LaSgs~-DG~I~IWD  732 (732)
                      |++++. |+.|+||+
T Consensus       415 l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          415 LVISDFLDHQIRVYR  429 (433)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCeEEEEE
Confidence            998875 99999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.2e-33  Score=296.52  Aligned_cols=246  Identities=19%  Similarity=0.325  Sum_probs=204.5

Q ss_pred             EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-eeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEE
Q 004737          487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWD  564 (732)
                      .+.+|.+.|++++|+|++++||+|+.|++|+|||+.++.. .+..+.+|...|.+++|++. ...+|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            4568999999999999999999999999999999987643 45678999999999999863 246777999999999999


Q ss_pred             CCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCC------
Q 004737          565 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------  630 (732)
Q Consensus       565 l~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spd------  630 (732)
                      +++++  ....+. +...|.+++|+|+  +..|++++.|+.|++||++...   ....+.+|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            99874  444444 4567999999998  7789999999999999998763   23455679999999999997      


Q ss_pred             -----------CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 004737          631 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       631 -----------g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg----~~L~sgs~dg~I~IwDl~t  694 (732)
                                 +.+|++++ |+.|++||++......++..+..|...|.+++|+|++    .+|++++.|++|++||+.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       46889888 9999999997654335677788899999999999986    7899999999999999976


Q ss_pred             C---e--EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          695 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       695 ~---~--~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .   .  ...+..|...|.+++|+|++.+|++++.||.|+||+
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            2   1  124557899999999999999999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=8.4e-32  Score=293.03  Aligned_cols=259  Identities=14%  Similarity=0.143  Sum_probs=214.4

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEecc---CCCceEEEEEc
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS  501 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~---h~~~V~~l~fs  501 (732)
                      |..+++|+..++.... ...+.+|...|++++|+| ++++|++++.|+.|++||+.+ ..+..+..   |...|.+++|+
T Consensus        95 dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~  172 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS  172 (383)
T ss_dssp             TSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred             CCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence            4567778877665432 223457999999999999 789999999999999999996 44555543   44889999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEecc
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKCQ  577 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~~~  577 (732)
                      |++++|++++.|+.|++||++ + ..+..+.+|...|.+++|+|++..++++++.|+.|++||+++    +.++..+.+.
T Consensus       173 ~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (383)
T 3ei3_B          173 VSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHE  250 (383)
T ss_dssp             TTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCC
Confidence            999999999999999999995 3 357888999999999999999877888999999999999997    6777778788


Q ss_pred             CCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----------------CCEEEEEEeCCCCEEEEEe-
Q 004737          578 SGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK-----------------NQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       578 ~~i~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----------------~~V~sla~spdg~~Lasgs-  638 (732)
                      ..+.+++|+| ++.+|++++.|+.|++||+++++....+.+|.                 ..+..++|+|++++  +++ 
T Consensus       251 ~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~  328 (383)
T 3ei3_B          251 KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND  328 (383)
T ss_dssp             SCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred             CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence            8899999999 99999999999999999999876655554332                 34445666677666  444 


Q ss_pred             CCeEEEEECCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          639 DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       639 Dg~I~IWDl~t~~~~~~i~~~~~--~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      |+.|++||+.++   +++..+..  +...+..++|+|++.+|++++ |+.|++||+++
T Consensus       329 d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          329 KRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999999999887   66777766  456778889999999999996 99999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-31  Score=278.85  Aligned_cols=258  Identities=16%  Similarity=0.209  Sum_probs=224.3

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC---eEEEEeccCCCceEEEEEc
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~V~~l~fs  501 (732)
                      .|..+++|+..++.   ....+..|...|.+++|+|++++|++++.|+.|++|++...   +.+..+.+|...|.+++| 
T Consensus        37 ~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  112 (313)
T 3odt_A           37 RDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF-  112 (313)
T ss_dssp             TTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE-
T ss_pred             cCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe-
Confidence            46678888887764   45567789999999999999999999999999999998754   567788899999999999 


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCC
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSG  579 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~  579 (732)
                       ++++|++++.|+.|++||  . ......+..|...|.+++|.|....++++++.|+.|++||.  .+....+.  +...
T Consensus       113 -~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~  186 (313)
T 3odt_A          113 -QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDV  186 (313)
T ss_dssp             -ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSC
T ss_pred             -cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCccc
Confidence             577999999999999999  2 34577888999999999999944567789999999999994  45555554  5567


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~  658 (732)
                      +.+++|+|++. +++++.|+.|++||+++++.+..+..|...|.+++|+|++. |++++ |+.|++||+.++   .++..
T Consensus       187 i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~---~~~~~  261 (313)
T 3odt_A          187 VRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENG---SLKQV  261 (313)
T ss_dssp             EEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTC---CEEEE
T ss_pred             EEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCC---ceeEE
Confidence            99999999977 99999999999999999999999999999999999999995 55666 999999999987   67788


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      +..+...|.+++|+|++. +++++.|+.|++||+.+++..
T Consensus       262 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          262 ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCC
T ss_pred             EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCcee
Confidence            888899999999999998 778999999999999987765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-31  Score=287.42  Aligned_cols=250  Identities=20%  Similarity=0.359  Sum_probs=214.2

Q ss_pred             eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcE
Q 004737          483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI  560 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I  560 (732)
                      +.+..+.+|...|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|++++|+++. ..+|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            4566788999999999999999999999999999999998432 3456788999999999998762 4677799999999


Q ss_pred             EEEECCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeC----
Q 004737          561 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT----  629 (732)
Q Consensus       561 ~iWDl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~sp----  629 (732)
                      ++||+.+++  .+..+. +...+.+++|+|+  +..+++++.|+.|++||+++.  .....+..|...|.+++|+|    
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999987  444444 4567999999999  899999999999999999987  34556778999999999999    


Q ss_pred             ---------CCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 004737          630 ---------SGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       630 ---------dg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspd---g~~L~sgs~dg~I~IwDl~t~  695 (732)
                               ++.+|++++ |+.|++||+++... ..++..+..|...|.+++|+|+   +.+|++++.|+.|++||+.++
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     699999999 99999999987643 2456678889999999999999   899999999999999999887


Q ss_pred             e----EE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          696 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       696 ~----~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .    ..  ....|...|++++|+|++++|++++.||.|+|||
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            3    22  2334889999999999999999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6e-31  Score=285.92  Aligned_cols=279  Identities=15%  Similarity=0.280  Sum_probs=206.3

Q ss_pred             cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC---CCeEEEEeCCCeEEEEecC
Q 004737          447 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       447 ~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd---g~~Lasgs~Dg~I~IWDl~  522 (732)
                      .+|...|++++|+| ++.+|++++.|+.|++||+.+++....+. +...+.++.|++.   +.+|++++.|+.|++||+.
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence            36999999999999 78899999999999999999999888886 7788999999984   4599999999999999999


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEE----------------eccCCeeEEEE
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRF  585 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~----------------~~~~~i~~v~~  585 (732)
                      ++. .+..+.+|...|.+++|+|++..++++++.||.|++||++++. ++..+                .+...+.+++|
T Consensus       175 ~~~-~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          175 SGS-CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSC-CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             Ccc-eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            876 4778889999999999999998888899999999999998765 33333                24466999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe
Q 004737          586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       586 sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~  659 (732)
                      +|++.++++++.|+.|++||+++++....+..+.      .....+.......+++++.|+.|++||+.++   .++..+
T Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~  330 (408)
T 4a11_B          254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITML  330 (408)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEE
T ss_pred             cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeee
Confidence            9999999999999999999999887654433221      1222233334455666666999999999987   788888


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeC-CCCEEEEEECCCeEEEeC
Q 004737          660 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  732 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWD  732 (732)
                      ..|...|.+++|+|++.+|++++.|+.|++||+.+++.+.........  ..+.+ ....+.+++.|+.|+||+
T Consensus       331 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          331 KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------
T ss_pred             ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence            999999999999999999999999999999999998877332222222  22333 334556677899999995

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.1e-30  Score=271.25  Aligned_cols=263  Identities=19%  Similarity=0.282  Sum_probs=226.2

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..+|..... ..+.+|...|++++|+|++++||+|+.|++|+|||+++++.+..+.+|...+.++.+  ++.
T Consensus        44 D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~  120 (318)
T 4ggc_A           44 DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSY  120 (318)
T ss_dssp             TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETT
T ss_pred             CCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCC
Confidence            67889999998865433 346789999999999999999999999999999999999999999999998887666  467


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----eEEeccCCe
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----GVFKCQSGA  580 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-----~~~~~~~~i  580 (732)
                      +|++++.++.+++|+.......+..+.+|...+.++.|.+++ .++++++.|+.|++||+++++..     ........+
T Consensus       121 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v  199 (318)
T 4ggc_A          121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV  199 (318)
T ss_dssp             EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCE
T ss_pred             EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCce
Confidence            999999999999999998887888999999999999999996 45669999999999999876532     222244668


Q ss_pred             eEEEEeCCCCEEE---EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCce
Q 004737          581 TQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGE  654 (732)
Q Consensus       581 ~~v~~sp~g~~ll---~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~  654 (732)
                      ..+.+.+.+..++   +++.++.|++||.+......... +...+..++|++++..+++++   |+.|+|||++++   +
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---~  275 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---A  275 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---C
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---c
Confidence            9999999876544   33457899999999988776655 678899999999999887754   889999999987   7


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                      ++..+.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus       276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            888999999999999999999999999999999999997653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.2e-32  Score=293.37  Aligned_cols=266  Identities=14%  Similarity=0.140  Sum_probs=210.3

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEeccCCCceEEEEEc
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h~~~V~~l~fs  501 (732)
                      .|..+++|+..++. +..+..+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++   ....+..|...|++++|+
T Consensus        31 ~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~  109 (377)
T 3dwl_C           31 ATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS  109 (377)
T ss_dssp             SSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred             CCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence            45677888887652 34567788999999999999999999999999999999999877   677788899999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCc--eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC------------
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------------  566 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~--~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~------------  566 (732)
                      |++++|++++.|+.|++||+++...  ....+.+ |...|.+++|+|++ .+|++++.|+.|++||+.            
T Consensus       110 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  188 (377)
T 3dwl_C          110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASV  188 (377)
T ss_dssp             TTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCS
T ss_pred             CCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccc
Confidence            9999999999999999999997652  3566666 99999999999986 567799999999999985            


Q ss_pred             ------CCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE----EEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737          567 ------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLAS  636 (732)
Q Consensus       567 ------t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~----i~~l~~h~~~V~sla~spdg~~Las  636 (732)
                            .++++..+.+...+.+++|+|++.+|++++.|+.|++||+++++.    +..+.+|...|.+++|+|++++|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  268 (377)
T 3dwl_C          189 WGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA  268 (377)
T ss_dssp             SCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred             cccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence                  244555555566799999999999999999999999999999876    7778889999999999999999999


Q ss_pred             EeCCeEEEEECCCCCC---------------------------c---------eeEEE-------------eecCCCceE
Q 004737          637 VSDELVRVWSIGSGSK---------------------------G---------ECIHE-------------LSCTGNKFH  667 (732)
Q Consensus       637 gsDg~I~IWDl~t~~~---------------------------~---------~~i~~-------------~~~~~~~I~  667 (732)
                      ++++.+.+|+......                           .         ..+..             ...|...|.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~  348 (377)
T 3dwl_C          269 GYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIA  348 (377)
T ss_dssp             ESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEE
T ss_pred             EcCCcEEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeE
Confidence            9977667887752210                           0         00000             112788999


Q ss_pred             EEEEeCCC-C---EEEEEEcCCeEEEEEC
Q 004737          668 SCVFHPTF-P---SLLVIGCYETLELWNM  692 (732)
Q Consensus       668 sl~fspdg-~---~L~sgs~dg~I~IwDl  692 (732)
                      ++.+.+.. .   .|++++.||.|++||+
T Consensus       349 ~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          349 TLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             EEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            99976654 3   5999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.4e-30  Score=282.72  Aligned_cols=274  Identities=14%  Similarity=0.157  Sum_probs=216.0

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEec
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT  521 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl  521 (732)
                      +..+.+|.+.|+|++|+|||++||+|+.++ ++|||+++++.......+  .+..++|.++++++ ++++.|++|+|||+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            445688999999999999999999988764 789999988776654332  48888999988877 56777899999999


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCCeeEEEEeCCCCEEEE--EEcC
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA--AAIE  598 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~i~~v~~sp~g~~ll~--~s~d  598 (732)
                      .+++ .+..+. |...|.++.|+++  .++ ++. |+.|++||+.++ +.+..+..  ....+++++  ..+++  ++.+
T Consensus        89 ~~~~-~~~~~~-~~~~v~~v~~~~~--~~~-~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~  158 (355)
T 3vu4_A           89 VKKQ-DVSRIK-VDAPVKDLFLSRE--FIV-VSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL  158 (355)
T ss_dssp             TTTE-EEEEEE-CSSCEEEEEECSS--EEE-EEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred             CCCc-EEEEEE-CCCceEEEEEcCC--EEE-EEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence            9876 355555 6779999999976  233 333 789999999988 77666654  444566666  56666  4678


Q ss_pred             CeEEEEECCCCe----------------EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCe-EEEEECCCCCCceeEEEee
Q 004737          599 NYISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       599 g~I~IwDl~t~~----------------~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~-I~IWDl~t~~~~~~i~~~~  660 (732)
                      |.|++||++++.                ++..+.+|...|++++|+|++.+|++++ |++ |++||++++   .++..+.
T Consensus       159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~  235 (355)
T 3vu4_A          159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR  235 (355)
T ss_dssp             TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred             cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence            999999999865                2677889999999999999999999999 998 999999987   7778887


Q ss_pred             -c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE---E--------------------Ec-cCCCCeeEEEEeC
Q 004737          661 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---T--------------------LS-AHDKLVSSLAAST  714 (732)
Q Consensus       661 -~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~---~--------------------~~-~h~~~V~sla~sp  714 (732)
                       + |...|.+++|+|++.+|++++.|+.|++||+......   .                    +. .+......++|++
T Consensus       236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  315 (355)
T 3vu4_A          236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS  315 (355)
T ss_dssp             CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence             4 8999999999999999999999999999999765311   1                    00 1122347799999


Q ss_pred             CCCEEEEEECCCeEEEeC
Q 004737          715 VNGMVASASHDKCVKIWK  732 (732)
Q Consensus       715 dg~~LaSgs~DG~I~IWD  732 (732)
                      ++++|++++.||.+++|+
T Consensus       316 d~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          316 ESSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             SSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEE
Confidence            999999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-32  Score=297.93  Aligned_cols=264  Identities=16%  Similarity=0.210  Sum_probs=218.2

Q ss_pred             EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-ccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCC---CCce-eEE
Q 004737          457 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT  530 (732)
Q Consensus       457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s---~~~~-~~~  530 (732)
                      .|+|++..+++++      +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+   +... ...
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            4677777777654      487 556788888 88999999999999 999999999999999999876   3311 122


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEEe-------------ccCCeeEEE--EeCCCCEE
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGRI  592 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~---t~~~i~~~~-------------~~~~i~~v~--~sp~g~~l  592 (732)
                      ..+|...|.+++|+|++ .+|++++.||.|++||++   .+++...+.             ....+.++.  +++++..+
T Consensus       107 ~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          107 TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence            22599999999999985 566799999999999995   454444333             233455665  55788999


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-cCCCceEE
Q 004737          593 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS  668 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~~~i~~l~~--h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~~~~~I~s  668 (732)
                      ++++.|+.|++||+++++++..+..  |...|++++|+|++.+|++++ |+.|++||++++   .++..+. .+...|.+
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~  262 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH  262 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence            9999999999999999999999988  899999999999999999999 999999999986   7777775 67778999


Q ss_pred             EEEeC----CCCEEEEEEcCCeEEEEECCCCeEE-EEcc--------------------------CCCCeeEEEEeCCCC
Q 004737          669 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG  717 (732)
Q Consensus       669 l~fsp----dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~--------------------------h~~~V~sla~spdg~  717 (732)
                      ++|+|    ++.+|++++.|+.|++||+.+++.+ .+.+                          |...|++++|+ +++
T Consensus       263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            96665    5779999999999999999998876 3332                          55678999999 778


Q ss_pred             EEEEEECCCeEEEeC
Q 004737          718 MVASASHDKCVKIWK  732 (732)
Q Consensus       718 ~LaSgs~DG~I~IWD  732 (732)
                      +|++|+.||.|++||
T Consensus       342 ~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          342 ILLTDEATSSIVMFS  356 (437)
T ss_dssp             EEEEEGGGTEEEEEE
T ss_pred             EEEecCCCCeEEEEE
Confidence            999999999999997

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.4e-30  Score=286.40  Aligned_cols=272  Identities=16%  Similarity=0.176  Sum_probs=222.2

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEecc-------------------------------------
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE-------------------------------------  490 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~-------------------------------------  490 (732)
                      .+|.|++|++||++|+++. ++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            4689999999999777664 7899999999988   5555543                                     


Q ss_pred             -----------------CCCceEEEEEcCCCCeE-EEEeCCCeEEEEecC--CCCceeEEee--cCCcceEEEEEcCCCC
Q 004737          491 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE  548 (732)
Q Consensus       491 -----------------h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~--s~~~~~~~l~--~h~~~V~sl~fspdg~  548 (732)
                                       |.+.|++++|+|++++| ++++.||.|+|||+.  ++. .+..+.  .|...|.+++|+|++ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~-  161 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDD-  161 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTS-
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCC-
Confidence                             33379999999999996 889999999999998  655 355554  577899999999997 


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeee----EEe-ccCCeeEEEEeCC---CCEEEEEEcCCeEEEEECCCCeEEEE-EcCCC
Q 004737          549 DLLCSCDNNSEIRYWSINNGSCAG----VFK-CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK  619 (732)
Q Consensus       549 ~llaSgs~Dg~I~iWDl~t~~~i~----~~~-~~~~i~~v~~sp~---g~~ll~~s~dg~I~IwDl~t~~~i~~-l~~h~  619 (732)
                      .+|++++.+|.|++|++.+++...    .+. +...+.+++|+|+   +.+|++++.|+.|++||+++++++.. +.+|.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence            455688889999999998877553    333 4567999999999   88999999999999999999987777 55899


Q ss_pred             CCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 004737          620 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP  673 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-------------------------~~~~~I~sl~fsp  673 (732)
                      ..|.+++|+ ++.+|++++ |+.|++||+.++   .++..+.                         .....|..++|+|
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            999999999 999999999 999999999987   4454443                         2345789999999


Q ss_pred             CCCEEEEEE-cCCeEEEEEC--CCC---eEE-EEccCCCCeeEEEEeCCCCEEEEEEC-------CCeEEEe
Q 004737          674 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW  731 (732)
Q Consensus       674 dg~~L~sgs-~dg~I~IwDl--~t~---~~~-~~~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IW  731 (732)
                      ++++|++++ .++.|++|++  .++   +.+ .+..| ..|.+++|+|++ ++++++.       +..|.||
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence            999999999 8899999999  554   444 45566 889999999954 5555433       4557777

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.98  E-value=7.3e-31  Score=292.35  Aligned_cols=265  Identities=14%  Similarity=0.198  Sum_probs=210.8

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEecc--CCCceEEEEEcC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSP  502 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~V~~l~fsp  502 (732)
                      |..+++|++..+.. ..+..+.+|.+.|++|+|+| ++.+|++|+.|++|+|||+++.........  +...+.+++|+|
T Consensus       141 dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (435)
T 4e54_B          141 GGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSA  219 (435)
T ss_dssp             TSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEET
T ss_pred             CCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECC
Confidence            45567777665532 23345679999999999998 789999999999999999987655444433  345688999999


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE----eccC
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQS  578 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~----~~~~  578 (732)
                      ++.+|++|+.||.|++||++..  .+..+.+|...|.+++|+|++..++++++.|+.|++||+++.+....+    .+..
T Consensus       220 ~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~  297 (435)
T 4e54_B          220 SSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH  297 (435)
T ss_dssp             TTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS
T ss_pred             CCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccc
Confidence            9999999999999999999753  467788999999999999999899999999999999999887654333    3456


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC------CEEEEEEeCCCCEEEEEe-------------C
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCWNTSGEYLASVS-------------D  639 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~------~V~sla~spdg~~Lasgs-------------D  639 (732)
                      .|.+++|+|++.+|++++.|+.|++||+.++.+...+..|..      .+..+.|+|++.+++++.             +
T Consensus       298 ~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  377 (435)
T 4e54_B          298 PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL  377 (435)
T ss_dssp             CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred             cccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence            799999999999999999999999999999887777766543      234556777777766654             2


Q ss_pred             CeEEEEECCCCCCceeEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737          640 ELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTENKT  697 (732)
Q Consensus       640 g~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl-~fspdg~~L~sgs~dg~I~IwDl~t~~~  697 (732)
                      +.|++||..++   .++..+ ..|...|.++ +|+|++.+|+++ .|+.|+|||+++++.
T Consensus       378 ~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg-~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          378 RTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASA-MGYHILIWSQQEART  433 (435)
T ss_dssp             CCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEE-CSSEEEECCCC----
T ss_pred             CEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEE-cCCcEEEEECCcCee
Confidence            47999999887   555554 4577778877 699999988775 488999999998865

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.3e-30  Score=286.29  Aligned_cols=271  Identities=17%  Similarity=0.212  Sum_probs=223.2

Q ss_pred             CCCCceeeeeecCCCce-eEEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEEcCCC-------eEEEEeccCCC
Q 004737          423 DPRDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQ  493 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~-~~~v~~l~~H~~~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~  493 (732)
                      ...+..+++|+..+... ...+..+.+|.+.|++++|+| ++++|++|+.|+.|+|||+.++       +.+..+.+|..
T Consensus        53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~  132 (402)
T 2aq5_A           53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK  132 (402)
T ss_dssp             CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred             EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence            34567788888755432 235567889999999999999 9999999999999999999987       56788899999


Q ss_pred             ceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEe--ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          494 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       494 ~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l--~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      .|++++|+|++ .+|++++.|+.|+|||+.++. .+..+  .+|...|.+++|+|++. +|++++.|+.|++||+++++.
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEE
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCce
Confidence            99999999998 699999999999999999876 46667  78999999999999865 555888999999999999999


Q ss_pred             eeEE-eccCC--eeEEEEeCCCCEEEEE---EcCCeEEEEECCCCeE-EEEE-cCCCCCEEEEEEeCCCCEEEE-Ee-CC
Q 004737          571 AGVF-KCQSG--ATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQVHSVCWNTSGEYLAS-VS-DE  640 (732)
Q Consensus       571 i~~~-~~~~~--i~~v~~sp~g~~ll~~---s~dg~I~IwDl~t~~~-i~~l-~~h~~~V~sla~spdg~~Las-gs-Dg  640 (732)
                      +..+ ..+..  +.++.|+|++.+++++   +.|+.|++||+++... +... ..|...|.+++|+|++.+|++ ++ |+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg  290 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS  290 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred             eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence            8887 44332  7899999998888888   5899999999998643 2222 247788999999999999865 54 99


Q ss_pred             eEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          641 LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       641 ~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      .|++||+.++.. ...+..+. +...|.+++|+|++.++++  .++.+++|++.++...
T Consensus       291 ~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          291 SIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE  346 (402)
T ss_dssp             CEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred             eEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence            999999998753 22333333 5688999999999987654  5669999999887654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=3.5e-30  Score=284.93  Aligned_cols=261  Identities=14%  Similarity=0.248  Sum_probs=210.6

Q ss_pred             CceeeeeecCCCc--------eeEEEEEecCCC------------CCeEEEEEcCCC--CEEEEEECCCcEEEEEcCCCe
Q 004737          426 DRVGRSAEVGKGF--------TFTEFQLIPAST------------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT  483 (732)
Q Consensus       426 d~~~r~wd~~~g~--------~~~~v~~l~~H~------------~~V~~lafSpdg--~~Lasgs~Dg~I~VWd~~t~~  483 (732)
                      |..+++|+..++.        .+..+..+.+|.            +.|++++|+|++  .+|++++.|+.|+|||+.+++
T Consensus        49 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~  128 (447)
T 3dw8_B           49 GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERD  128 (447)
T ss_dssp             TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEE
T ss_pred             CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccccc
Confidence            4455666655443        344577888998            899999999998  799999999999999987644


Q ss_pred             EE---------------------------------------EE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          484 VK---------------------------------------ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       484 ~~---------------------------------------~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      ..                                       .. ..+|...|++++|+|++++|++| .|+.|+|||+..
T Consensus       129 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~  207 (447)
T 3dw8_B          129 KRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEI  207 (447)
T ss_dssp             EEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTE
T ss_pred             CCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCC
Confidence            32                                       12 36799999999999999999998 899999999985


Q ss_pred             CCceeE-------EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEEeccC-------------C
Q 004737          524 PDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKCQS-------------G  579 (732)
Q Consensus       524 ~~~~~~-------~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~----i~~~~~~~-------------~  579 (732)
                      ....+.       .+.+|...|.+++|+|++..+|++++.||.|++||+++++.    +..+..+.             .
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (447)
T 3dw8_B          208 TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISS  287 (447)
T ss_dssp             EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTC
T ss_pred             CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCce
Confidence            443343       35689999999999999867888999999999999999886    56666543             7


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCC---------------EEEEEEeCCCCEEEEEe-CCeE
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVCWNTSGEYLASVS-DELV  642 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~---------------V~sla~spdg~~Lasgs-Dg~I  642 (732)
                      +.+++|+|++.+|++++. +.|++||+++ ++++..+.+|...               +..++|+|++.+|++++ |+.|
T Consensus       288 v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v  366 (447)
T 3dw8_B          288 ISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFF  366 (447)
T ss_dssp             EEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEE
T ss_pred             EEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEE
Confidence            999999999999999988 9999999997 7888888877532               33499999999999999 9999


Q ss_pred             EEEECCCCCCceeEEEee---------------------------------cCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          643 RVWSIGSGSKGECIHELS---------------------------------CTGNKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       643 ~IWDl~t~~~~~~i~~~~---------------------------------~~~~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                      ++||+.++.   .+. +.                                 .....|..++|+|++.+|++++.++ +++
T Consensus       367 ~iwd~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~  441 (447)
T 3dw8_B          367 RMFDRNTKR---DIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYI  441 (447)
T ss_dssp             EEEETTTCC---EEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEE
T ss_pred             EEEEcCCCc---cee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eee
Confidence            999998873   221 11                                 2235688999999999888877765 888


Q ss_pred             EECC
Q 004737          690 WNMT  693 (732)
Q Consensus       690 wDl~  693 (732)
                      |..+
T Consensus       442 ~~~~  445 (447)
T 3dw8_B          442 FQDK  445 (447)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            8654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=4.5e-30  Score=285.52  Aligned_cols=272  Identities=18%  Similarity=0.355  Sum_probs=219.9

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..++.   .+..+.+|.+.|++++|  ++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++  .
T Consensus       152 dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~  224 (435)
T 1p22_A          152 DNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--G  224 (435)
T ss_dssp             SSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--T
T ss_pred             CCeEEEEeCCCCe---EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--C
Confidence            5567778877764   45668899999999999  788999999999999999999999999999999999999974  5


Q ss_pred             eEEEEeCCCeEEEEecCCCCce--eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeE
Q 004737          506 RLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ  582 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~--~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~  582 (732)
                      +|++|+.||.|++||+.++...  ...+.+|...|.+++|.   ..++++++.||.|++||+++++++..+.. ...+.+
T Consensus       225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~  301 (435)
T 1p22_A          225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC  301 (435)
T ss_dssp             EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEE
Confidence            9999999999999999876642  26778999999999994   45777999999999999999999988874 456888


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC------cee
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------GEC  655 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~------~~~  655 (732)
                      +.++  +..+++++.||.|++||+++++++..+.+|...|.+++|  ++.+|++++ ||.|++||+.+...      ..+
T Consensus       302 ~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  377 (435)
T 1p22_A          302 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC  377 (435)
T ss_dssp             EEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred             EEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence            8884  579999999999999999999999999999999999999  788999999 99999999976531      127


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEe
Q 004737          656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS  713 (732)
Q Consensus       656 i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~s  713 (732)
                      +..+..|...|.+++|  ++.+|++++.|+.|++||+.+...........++.++.|.
T Consensus       378 ~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  433 (435)
T 1p22_A          378 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI  433 (435)
T ss_dssp             EEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred             eeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence            8888899999999999  7788999999999999999887766444444455555554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=6e-30  Score=284.70  Aligned_cols=245  Identities=18%  Similarity=0.320  Sum_probs=210.0

Q ss_pred             EEeccCCCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCC---------CceeEEeecCCcceEEEEEcCCCCcEEEEEe
Q 004737          486 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  555 (732)
Q Consensus       486 ~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~---------~~~~~~l~~h~~~V~sl~fspdg~~llaSgs  555 (732)
                      .....|.+.|++++|+|+ +.+|++++.||.|+|||+...         ......+.+|...|.+++|+|++..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            344579999999999997 789999999999999999862         2356788899999999999999876888999


Q ss_pred             CCCcEEEEECCCCee-------eeEE-eccCCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 004737          556 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH  623 (732)
Q Consensus       556 ~Dg~I~iWDl~t~~~-------i~~~-~~~~~i~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~V~  623 (732)
                      .||.|++||+..+..       ...+ .+...+.+++|+| ++..|++++.|+.|++||+++.   +.+..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987432       2333 2456699999999 6778889999999999999987   56777888999999


Q ss_pred             EEEEeCCCC-EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC------
Q 004737          624 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------  694 (732)
Q Consensus       624 sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t------  694 (732)
                      +++|+|++. +|++++ |+.|++||+++..  .++..+..|...|.+++|+|++. +|++++.|+.|+|||+..      
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            999999987 677888 9999999998743  46777888999999999999995 688999999999999987      


Q ss_pred             --------CeEE-EEccCCCCeeEEEEeCCCC-EEEEEECCCeEEEeC
Q 004737          695 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  732 (732)
Q Consensus       695 --------~~~~-~~~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWD  732 (732)
                              ...+ ...+|...|.+++|+|++. +|++++.||.|+||+
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                    2333 6678999999999999999 999999999999996

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.5e-31  Score=284.20  Aligned_cols=265  Identities=8%  Similarity=0.024  Sum_probs=210.8

Q ss_pred             EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---------CCCce
Q 004737          457 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS  527 (732)
Q Consensus       457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---------s~~~~  527 (732)
                      .+.+|+.+|++|+.||.|+|||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +....
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            445688899999999999999999999888876  467888899988   9999999999999766         33322


Q ss_pred             eEEeecCCcceEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          528 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      .....+|...|.+++|+|  ++ .++++++.||.|++||+++++++....  ....+.+++|+|++.++++++.|+.|++
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            233346778999999999  75 566799999999999999999876653  3346999999999999999999999999


Q ss_pred             EECCCCeEE-EEEcC-CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 004737          604 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL  679 (732)
Q Consensus       604 wDl~t~~~i-~~l~~-h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I--~sl~fspdg~~L~  679 (732)
                      ||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|++||+++......+..+..+...+  .+++|+|++++|+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence            999999877 77887 9999999999999999999997799999999875433333322233333  4699999999999


Q ss_pred             EEEc-CCeEEEEECCCCeEE-EEccCCCCeeEEEEeC---CCCEEEEEECCCeEEEe
Q 004737          680 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW  731 (732)
Q Consensus       680 sgs~-dg~I~IwDl~t~~~~-~~~~h~~~V~sla~sp---dg~~LaSgs~DG~I~IW  731 (732)
                      +++. ++.|++|++...... ..    ..+..++|.+   +...|++++.||.+.+|
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence            9998 999999999655322 22    4566777777   77788888888887765

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=2.1e-29  Score=274.80  Aligned_cols=262  Identities=11%  Similarity=0.110  Sum_probs=204.2

Q ss_pred             CCceeeeeecCCCce-----e--EEEEEecCCCCCeEEEEEcCCCCEEEEEE-----------CCCcEEEEEcCCCeEE-
Q 004737          425 RDRVGRSAEVGKGFT-----F--TEFQLIPASTSKVESCHFSPDGKLLATGG-----------HDKKAVLWCTESFTVK-  485 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~-----~--~~v~~l~~H~~~V~~lafSpdg~~Lasgs-----------~Dg~I~VWd~~t~~~~-  485 (732)
                      .+..+++|++..+..     +  .....+.+|.+.|.|++++  ++.+++|.           .|+.|++|++.+.... 
T Consensus        41 i~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~  118 (365)
T 4h5i_A           41 IPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQL  118 (365)
T ss_dssp             CCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEE
T ss_pred             CCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceE
Confidence            345678888765421     1  1223578899999998875  55676654           4778999998654321 


Q ss_pred             ---EEe-----ccCCCceEEEEEcCCCCeEEEEe--CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe
Q 004737          486 ---STL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  555 (732)
Q Consensus       486 ---~~l-----~~h~~~V~~l~fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs  555 (732)
                         ...     ..+...+.+++|+|||++|++++  .|++|+|||+.+... +..+ .|...|.+++|+|++. ++++++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~-~~~~~V~~v~fspdg~-~l~s~s  195 (365)
T 4h5i_A          119 EFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEI-ETRGEVKDLHFSTDGK-VVAYIT  195 (365)
T ss_dssp             EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSS-EEEEEC
T ss_pred             EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEe-CCCCceEEEEEccCCc-eEEecc
Confidence               111     23456799999999999987655  689999999998663 4444 4788899999999975 555777


Q ss_pred             CCCcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCCCeE----EEEEcCCCCCEEE
Q 004737          556 NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN----YISILDVETQVC----RLKLQGHKNQVHS  624 (732)
Q Consensus       556 ~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t~~~----i~~l~~h~~~V~s  624 (732)
                       ++.+++|+..++..+....   +...+.+++|+|++..+++++.++    .+++||+.....    ...+.+|...|++
T Consensus       196 -~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~  274 (365)
T 4h5i_A          196 -GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS  274 (365)
T ss_dssp             -SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred             -ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence             4557777777777654432   234589999999999999999887    688899877643    3467789999999


Q ss_pred             EEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          625 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       625 la~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      ++|+|+|++|++++ |+.|+|||+.++   +++..+ .+|...|++++|+||+++|++++.|++|+|||+...
T Consensus       275 ~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          275 MDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999 999999999987   777764 689999999999999999999999999999999643

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-31  Score=305.09  Aligned_cols=254  Identities=9%  Similarity=0.053  Sum_probs=198.7

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEE----EEeccCCCceEEEEEcCC------CCeEEEEeCCCeEEEEecCCCCc----
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY----  526 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~V~~l~fspd------g~~Lasgs~Dg~I~IWDl~s~~~----  526 (732)
                      ++++|++++.|++|+|||+.+++..    ..+..|.+.|.+++|+|+      +.+||+++.||+|+|||+..+..    
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~  251 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV  251 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence            3344455668899999999876542    446678899999999996      57999999999999999986542    


Q ss_pred             ------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEEe-ccCCeeEE--EEeCCC-CEEEEE
Q 004737          527 ------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQM--RFQPRL-GRILAA  595 (732)
Q Consensus       527 ------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-~i~~~~-~~~~i~~v--~~sp~g-~~ll~~  595 (732)
                            +...+.+|...|++++|++++  .|++|+.||+|++||++++. ....+. +...|.++  .|++++ ..|+++
T Consensus       252 ~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          252 FKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             EECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             ceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence                  134678899999999999863  68899999999999999764 334454 45679998  567777 789999


Q ss_pred             EcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEe
Q 004737          596 AIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  672 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~h~~--~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fs  672 (732)
                      +.|+.|+|||++++++...+.+|..  .|.+++|+|++..|++++ |++|++||++++   .++..+..|...|++++|+
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva~S  406 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIGVS  406 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEECC
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEEeC
Confidence            9999999999998876666666543  588999999999999888 889999999987   5666777899999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEc-----cCCCCeeEEEEeCCCCEE
Q 004737          673 PTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV  719 (732)
Q Consensus       673 pdg~~L~sgs~dg~I~IwDl~t~~~~~~~-----~h~~~V~sla~spdg~~L  719 (732)
                      |++++|++++.|++|++||+..+......     .+...|++++|+|+++.+
T Consensus       407 p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          407 RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence            99999999999999999998664211111     112257899999999855

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=9e-29  Score=269.25  Aligned_cols=262  Identities=11%  Similarity=0.122  Sum_probs=223.1

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  541 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl  541 (732)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence            367888899999999999999999988775 48999999999977 5667899999999988663 55555444 89999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN  620 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l-l~~s~dg~I~IwDl~t~~~i~~l~~h~~  620 (732)
                      +|+|++..++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            999999888888888899999999999999999888889999999999988 45666899999999999998888755 5


Q ss_pred             CEEEEEEeCCCCEEE-EEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 004737          621 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN  695 (732)
Q Consensus       621 ~V~sla~spdg~~La-sgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs---~dg~I~IwDl~t~  695 (732)
                      .+.+++|+|++++|+ +++ ++.|++||++++   .++..+. +...+.+++|+|++++|++++   .++.|++||+.++
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            679999999999885 445 889999999887   5555554 456789999999999999988   6889999999999


Q ss_pred             eEEEEccCCCCeeEEEEeCCCCEE-EEEECCCeEEEeC
Q 004737          696 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK  732 (732)
Q Consensus       696 ~~~~~~~h~~~V~sla~spdg~~L-aSgs~DG~I~IWD  732 (732)
                      +.+........+.+++|+|++++| ++++.|+.|++||
T Consensus       235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            888444444568999999999977 5668899999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.3e-28  Score=264.79  Aligned_cols=269  Identities=14%  Similarity=0.153  Sum_probs=223.2

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      ..+..+++|+..++..   +..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .|.+++|+|
T Consensus         9 ~~d~~v~v~d~~~~~~---~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~sp   83 (391)
T 1l0q_A            9 SESDNISVIDVTSNKV---TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (391)
T ss_dssp             TTTTEEEEEETTTTEE---EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             CCCCEEEEEECCCCeE---EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECC
Confidence            4567889999888754   44556665 49999999999987 666689999999999999998887665 899999999


Q ss_pred             CCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee
Q 004737          503 SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT  581 (732)
Q Consensus       503 dg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~  581 (732)
                      ++++|++++ .|+.|++||+.+++. +..+.. ...+.+++|+|+++.++++++.++.|++||+.+++++..+..+..+.
T Consensus        84 dg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~  161 (391)
T 1l0q_A           84 DGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK  161 (391)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcc
Confidence            999886554 679999999998653 455554 45789999999998887899999999999999999999998888899


Q ss_pred             EEEEeCCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeE
Q 004737          582 QMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECI  656 (732)
Q Consensus       582 ~v~~sp~g~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i  656 (732)
                      .++|+|+++.++ ++..++.|++||+++++++..+. +...+.+++|+|++++|++++    ++.|++||+.++   +.+
T Consensus       162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~  237 (391)
T 1l0q_A          162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KIT  237 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEE
Confidence            999999999885 45567999999999998887776 567899999999999888775    679999999887   566


Q ss_pred             EEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCeEE-EEccCC
Q 004737          657 HELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD  704 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspdg~~L~-sgs~dg~I~IwDl~t~~~~-~~~~h~  704 (732)
                      ..+..+ ..+.+++|+|++++++ +++.++.|++||+.+++.+ .+..|.
T Consensus       238 ~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          238 ARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence            666654 4578999999999885 4567889999999999877 444443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=9.2e-30  Score=283.18  Aligned_cols=252  Identities=19%  Similarity=0.366  Sum_probs=218.8

Q ss_pred             EEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCC----------CeEEEEeccCCCceEEEEEcCCCC-eEEEEe
Q 004737          444 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS  511 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~V~~l~fspdg~-~Lasgs  511 (732)
                      .....|.+.|++++|+|+ +.+||+++.||.|+|||+.+          ......+.+|...|++++|+|++. +|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            445679999999999997 77999999999999999986          677888899999999999999988 999999


Q ss_pred             CCCeEEEEecCCCCce------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEEe-ccCCee
Q 004737          512 ADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGAT  581 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~~~------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~---~~i~~~~-~~~~i~  581 (732)
                      .||.|++||+......      ...+.+|...|.+++|+|++..+|++++.|+.|++||++++   +.+..+. +...+.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            9999999999874321      35677899999999999977889999999999999999987   4555554 456799


Q ss_pred             EEEEeCCCC-EEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCC-----
Q 004737          582 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK-----  652 (732)
Q Consensus       582 ~v~~sp~g~-~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~-----  652 (732)
                      +++|+|++. .+++++.||.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....     
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            999999987 588999999999999998 567788888999999999999985 677777 99999999987321     


Q ss_pred             ------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 004737          653 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       653 ------~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs~dg~I~IwDl~t~  695 (732)
                            ...+..+..|...|.+++|+|++. +|++++.|+.|+||++...
T Consensus       362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                  256777788899999999999999 8999999999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.4e-29  Score=269.36  Aligned_cols=255  Identities=13%  Similarity=0.115  Sum_probs=218.1

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEc-CCCeEEEEecc--CCCceEEEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRF  500 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~-~t~~~~~~l~~--h~~~V~~l~f  500 (732)
                      .|..+++|+...+........+.+|...|++++|+|+++ +|++|+.|+.|++||+ .+++. ..+.+  |...|.+++|
T Consensus        31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~  109 (342)
T 1yfq_A           31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICK  109 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEE
T ss_pred             CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEe
Confidence            356778888877764444566679999999999999999 9999999999999999 87755 67788  9999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEecCC---------CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Cee
Q 004737          501 SPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSC  570 (732)
Q Consensus       501 spdg~~Lasgs~Dg~I~IWDl~s---------~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~  570 (732)
                      +| +.+|++++.|+.|++||+.+         .. .+..+. |...|.+++|+|++   +++++.|+.|++||+++ +..
T Consensus       110 ~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~  183 (342)
T 1yfq_A          110 YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD  183 (342)
T ss_dssp             ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC
T ss_pred             CC-CCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc
Confidence            99 99999999999999999986         44 244444 88999999999875   66889999999999988 543


Q ss_pred             e---eEEeccCCeeEEEEeC-CCCEEEEEEcCCeEEEEECCCC------eEEEEEcCCCC---------CEEEEEEeCCC
Q 004737          571 A---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQGHKN---------QVHSVCWNTSG  631 (732)
Q Consensus       571 i---~~~~~~~~i~~v~~sp-~g~~ll~~s~dg~I~IwDl~t~------~~i~~l~~h~~---------~V~sla~spdg  631 (732)
                      .   ....+...+.+++|+| ++..+++++.||.|++||++..      +....+..|..         .|.+++|+|++
T Consensus       184 ~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  263 (342)
T 1yfq_A          184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH  263 (342)
T ss_dssp             CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT
T ss_pred             cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCC
Confidence            2   2223456799999999 9999999999999999999876      77777877765         99999999999


Q ss_pred             CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCCe-EEEEE
Q 004737          632 EYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET-LELWN  691 (732)
Q Consensus       632 ~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~dg~-I~IwD  691 (732)
                      ++|++++ ||.|++||+.++   .++..+..| ...|.+++  |++.+|++++.|+. .+.|.
T Consensus       264 ~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          264 KFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            9999999 999999999987   778888888 99999999  99999999999998 44444

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-30  Score=292.35  Aligned_cols=261  Identities=10%  Similarity=0.085  Sum_probs=212.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      -...|.+++|+|||+++|+++.|++|+  |...++.   +.+|...|.+++|+|+|       .++.+.+|+.+...  .
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--~   79 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--L   79 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--S
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC-------CcceEEEEeCCCce--E
Confidence            456799999999999999999999999  7666544   47999999999999998       46666666544221  1


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-----CeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-----~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      .. ..|...|.+++|+|+|. .|++++.||.|++||...  ++..+.++.     .+.+++|+|+|.+|++++.||.|++
T Consensus        80 ~~-~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           80 LN-SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             ST-TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             ee-cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            12 24588999999999975 555889999999999654  666555332     4999999999999999999999999


Q ss_pred             EECCCCe-------EEEEE----cCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-ecCCCceEEEEE
Q 004737          604 LDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVF  671 (732)
Q Consensus       604 wDl~t~~-------~i~~l----~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~f  671 (732)
                      ||+.++.       .+..+    .+|..+|.+++|+|+| +++++.|+.|++||+..........++ ..|...|.+++|
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            9999875       35666    6688899999999999 444444999999999886432234555 367789999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEE--eCCCCEEEEEECCCeEEEeC
Q 004737          672 HPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAA--STVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       672 spdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~~~V~sla~--spdg~~LaSgs~DG~I~IWD  732 (732)
                      +  +..|++++ ++.|++||+.+++...+. +|.+.|..++|  +|++..|+++++||+ ++|.
T Consensus       235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             E--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             E--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            9  57788776 699999999999985443 89999999999  999999999999999 9984

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.8e-30  Score=306.34  Aligned_cols=252  Identities=20%  Similarity=0.313  Sum_probs=213.8

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEcCC--CCeEEEEeCCCeEEE
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV  518 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fspd--g~~Lasgs~Dg~I~I  518 (732)
                      +.++.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|.+.|++++|+++  +.+|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            35678999999999999999999999999999999998  56777889999999999999988  999999999999999


Q ss_pred             EecCCCCc-eeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEEeccCCeeEEEEeC------
Q 004737          519 WDTENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP------  587 (732)
Q Consensus       519 WDl~s~~~-~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t~~~i---~~~~~~~~i~~v~~sp------  587 (732)
                      ||+.++.. ....+.+|...|.+++|+|++ ..++++++.||.|++||++++...   ....+...+.+++|+|      
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            99998642 456778899999999999983 356779999999999999887332   2223556799999999      


Q ss_pred             -------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEeCC---CCEEEEEe-CCeEEEEECCCCCC
Q 004737          588 -------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       588 -------~g~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~V~sla~spd---g~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                             ++..+++++.||.|++||++++    .+...+.+|...|++++|+|+   +.+|++++ ||.|++||+.++..
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                   5889999999999999999876    667788899999999999999   89999999 99999999988632


Q ss_pred             c--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          653 G--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       653 ~--~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      .  ..+.....+...|.+++|+|++.++++++.|+.|++||+..
T Consensus       242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            1  12233345778899999999999999999999999999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-30  Score=292.74  Aligned_cols=262  Identities=10%  Similarity=0.096  Sum_probs=211.5

Q ss_pred             CCceeeeeecCCCceeEEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC-----ceEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDV  498 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~-~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~-----~V~~l  498 (732)
                      .++.+.+|+.....      .+. .|...|++|+|||||++||+++.||.|+|||.+.  .+..+. |..     .|.++
T Consensus        65 ~~~~~~~~~~~~~~------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sv  135 (588)
T 2j04_A           65 FENKLDFELAQQNG------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCF  135 (588)
T ss_dssp             CCCTTTTSCCCSSC------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEE
T ss_pred             CcceEEEEeCCCce------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEE
Confidence            45555555543222      122 5688999999999999999999999999999654  666677 665     49999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEecCCCCc------eeEEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 004737          499 RFSPSLSRLATSSADRTVRVWDTENPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  568 (732)
Q Consensus       499 ~fspdg~~Lasgs~Dg~I~IWDl~s~~~------~~~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~  568 (732)
                      +|+|||++||+|+.||+|+|||+.++..      .+..+    .+|...|.+++|+|++   +++++.|+.|++||+..+
T Consensus       136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~  212 (588)
T 2j04_A          136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSAS  212 (588)
T ss_dssp             EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCC
Confidence            9999999999999999999999998653      34565    6788899999999997   557788999999999887


Q ss_pred             eee---eEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE--eCCCCEEEEEe-CC
Q 004737          569 SCA---GVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DE  640 (732)
Q Consensus       569 ~~i---~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~--spdg~~Lasgs-Dg  640 (732)
                      ...   ..+.  +...|.+++|+  +..+++++ ++.|++||+.+++......+|...|..++|  +|++..|++++ ||
T Consensus       213 ~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG  289 (588)
T 2j04_A          213 SHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTS  289 (588)
T ss_dssp             SSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCE
T ss_pred             ccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCC
Confidence            742   4453  33579999999  57777776 699999999998875444479999999999  99999999999 88


Q ss_pred             eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEE
Q 004737          641 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  720 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~La  720 (732)
                      + ++|.+.                   .+.|+|++..++..  |+.+++|+...+....+ .+...|.+++|+|||..+|
T Consensus       290 ~-klw~~d-------------------~~~~spd~~l~a~~--d~~v~lW~~~g~~l~~~-~~~~~I~~va~SPdG~~lA  346 (588)
T 2j04_A          290 Y-KVLLED-------------------ELHVTADNIIAPYL--EKKFKKWSTIWNEFNNY-ETTLVIHGISLSPDGYSIA  346 (588)
T ss_dssp             E-EEEESS-------------------SEEEECCCSSHHHH--HHHHHHTTTTTTSSSSS-CCEEEEEEEEECTTSSEEE
T ss_pred             C-EEEeec-------------------cEEECCCceEEEEc--CCEEEEEECCCCceeee-ccceEEEEEEECCCCCEEE
Confidence            9 999976                   15699999866664  88999999866653323 3466799999999999999


Q ss_pred             EEEC
Q 004737          721 SASH  724 (732)
Q Consensus       721 Sgs~  724 (732)
                      +++.
T Consensus       347 ~~~~  350 (588)
T 2j04_A          347 IVYD  350 (588)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3e-28  Score=257.00  Aligned_cols=274  Identities=18%  Similarity=0.206  Sum_probs=198.1

Q ss_pred             CCceeeeeecCCCc-eeEEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCCC---------eEEEEeccCC
Q 004737          425 RDRVGRSAEVGKGF-TFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHT  492 (732)
Q Consensus       425 ~d~~~r~wd~~~g~-~~~~v~~l~~H~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t~---------~~~~~l~~h~  492 (732)
                      .|..+++|+..++. .+..+..+.+|...|++++|+|  |+++|++|+.|+.|+|||+.++         +.+..+..|.
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  110 (351)
T 3f3f_A           31 SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK  110 (351)
T ss_dssp             TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS
T ss_pred             CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccC
Confidence            35677888877643 3356677899999999999999  6999999999999999999887         6678888999


Q ss_pred             CceEEEEEcCC--CCeEEEEeCCCeEEEEecCCCCceeE------------EeecCCcceEEEEEcCC--CCcEEEEEeC
Q 004737          493 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR------------TFTGHSTTVMSLDFHPS--KEDLLCSCDN  556 (732)
Q Consensus       493 ~~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~~~~~~------------~l~~h~~~V~sl~fspd--g~~llaSgs~  556 (732)
                      ..|.+++|+|+  +.+|++++.||.|++||+.+......            ....|...+.+++|+|+  ...++++++.
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~  190 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSAL  190 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEET
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecC
Confidence            99999999999  99999999999999999987653211            01267889999999997  3567778999


Q ss_pred             CCcEEEEECCCCee--eeEEe-ccCCeeEEEEeCCC----CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737          557 NSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       557 Dg~I~iWDl~t~~~--i~~~~-~~~~i~~v~~sp~g----~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~sp  629 (732)
                      ++.+.+|+...++.  +..+. +...|.+++|+|++    ..|++++.||.|++||++.+........+...+....+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  270 (351)
T 3f3f_A          191 EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSA  270 (351)
T ss_dssp             TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------
T ss_pred             CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCc
Confidence            99998888887765  33443 34679999999998    7899999999999999998766555544444555555555


Q ss_pred             CCCEEEEEe-C-CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          630 SGEYLASVS-D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       630 dg~~Lasgs-D-g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      ...++..+. + .....+.+........+..+..|...|++++|+|++.+|++++.|+.|++||+.+++.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          271 DVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             --------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             ccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence            555555544 2 22333333222333778888899999999999999999999999999999999987544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=6.4e-28  Score=257.81  Aligned_cols=262  Identities=16%  Similarity=0.223  Sum_probs=213.7

Q ss_pred             CceeeeeecCC-CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE--cC
Q 004737          426 DRVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SP  502 (732)
Q Consensus       426 d~~~r~wd~~~-g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f--sp  502 (732)
                      |..+++|+..+ +..  ....+.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+. +..|...|++++|  ++
T Consensus        63 dg~i~iw~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~  139 (368)
T 3mmy_A           63 ANDVRCWEVQDSGQT--IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP  139 (368)
T ss_dssp             TSEEEEEEECTTSCE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS
T ss_pred             CCcEEEEEcCCCCce--eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC
Confidence            56678888876 432  235678899999999999999999999999999999999988776 4569999999999  89


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCC
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSG  579 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~  579 (732)
                      ++.+|++++.|+.|++||++++. .+..+..+. .+.++.+.+.   .+++++.++.+++||++.........   ....
T Consensus       140 ~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  214 (368)
T 3mmy_A          140 NYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQ  214 (368)
T ss_dssp             SCEEEEEEETTSEEEEECSSCSS-CSEEEECSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSC
T ss_pred             CCCEEEEccCCCcEEEEECCCCc-EEEEEecCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCC
Confidence            99999999999999999999876 466666554 6777777743   55577779999999998765443322   2234


Q ss_pred             eeEEEEeCCCCE----EEEEEcCCeEEEEECCCC---eEEEEEcCCCC------------CEEEEEEeCCCCEEEEEe-C
Q 004737          580 ATQMRFQPRLGR----ILAAAIENYISILDVETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-D  639 (732)
Q Consensus       580 i~~v~~sp~g~~----ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~------------~V~sla~spdg~~Lasgs-D  639 (732)
                      ..++.+.++...    +++++.|+.|++||++..   ..+..+..|..            .|.+++|+|++++|++++ |
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  294 (368)
T 3mmy_A          215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD  294 (368)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred             CceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC
Confidence            666666665544    999999999999999987   55667777765            799999999999999999 9


Q ss_pred             CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe---EEEEECCCCeEE
Q 004737          640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET---LELWNMTENKTL  698 (732)
Q Consensus       640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~---I~IwDl~t~~~~  698 (732)
                      |.|++||+.++   .++..+..|...|.+++|+|++.+|++++.|+.   +.+|+.+....+
T Consensus       295 g~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i  353 (368)
T 3mmy_A          295 GRFSFWDKDAR---TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI  353 (368)
T ss_dssp             SCEEEEETTTT---EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred             CeEEEEECCCC---cEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCCcccee
Confidence            99999999987   788889999999999999999999999999884   444555554444

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=5.7e-29  Score=273.78  Aligned_cols=262  Identities=15%  Similarity=0.138  Sum_probs=178.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-----EeccCCCceEEEEEcC--------CCCeEEEEeC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSA  512 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~V~~l~fsp--------dg~~Lasgs~  512 (732)
                      ...|...+....+++++.+||+++.|++|+|||+.+++...     .+.+|.+.|++|+|+|        |+++||+|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            34566666777777888899999999999999999886543     3578999999999997        7899999999


Q ss_pred             CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCE
Q 004737          513 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGR  591 (732)
Q Consensus       513 Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~  591 (732)
                      |++|+|||+.+.. .+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.......... ....        
T Consensus       165 D~tv~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------  235 (393)
T 4gq1_A          165 DCTLIIWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------  235 (393)
T ss_dssp             TSEEEEEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC--------
T ss_pred             CCeEEEEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce--------
Confidence            9999999998765 46667778899999999999888899999999999999998876554432111 1000        


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe-CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCce---
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---  666 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s-pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I---  666 (732)
                      .+.         ++...........+|...|.++.|+ ++++.|++++ |+.+++||+.....   ...+..+...+   
T Consensus       236 ~~s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~  303 (393)
T 4gq1_A          236 LLT---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPK  303 (393)
T ss_dssp             SEE---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------
T ss_pred             EEe---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccE
Confidence            011         1111111122334688899999997 7999999999 99999999987632   22222222222   


Q ss_pred             ---------------EEEEEeC--CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          667 ---------------HSCVFHP--TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       667 ---------------~sl~fsp--dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                                     ..+.|+|  ++.++++++.|+.|++||+.+++.. ....|...|.+++|+|||++||++++||.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence                           2233433  2335566677999999999988766 667899999999999999999999988853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.1e-29  Score=296.78  Aligned_cols=247  Identities=21%  Similarity=0.370  Sum_probs=210.8

Q ss_pred             EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCC-CcEEEEEeCCCcEEEE
Q 004737          486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYW  563 (732)
Q Consensus       486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg-~~llaSgs~Dg~I~iW  563 (732)
                      ..+.+|.+.|++++|+|++++|++|+.||+|+|||+..+. .....+.+|...|++++|+++. ..++++|+.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4578999999999999999999999999999999998432 3466788999999999999872 4677799999999999


Q ss_pred             ECCCCe--eeeEEe-ccCCeeEEEEeCC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeC-------
Q 004737          564 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT-------  629 (732)
Q Consensus       564 Dl~t~~--~i~~~~-~~~~i~~v~~sp~--g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~sp-------  629 (732)
                      |+.+++  .+..+. +...|.+++|+|+  +..+++++.||.|++||++++  .....+.+|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999886  444444 4567999999999  999999999999999999887  34456678999999999999       


Q ss_pred             ------CCCEEEEEe-CCeEEEEECCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCe--
Q 004737          630 ------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK--  696 (732)
Q Consensus       630 ------dg~~Lasgs-Dg~I~IWDl~t~~~~-~~i~~~~~~~~~I~sl~fspd---g~~L~sgs~dg~I~IwDl~t~~--  696 (732)
                            ++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+   +.+|++++.|+.|++||+.++.  
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~  242 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  242 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence                  588999988 999999999876432 556678889999999999999   8999999999999999998873  


Q ss_pred             ----EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          697 ----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       697 ----~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                          ......|...|++++|+|++.+|++++.||.|+|||
T Consensus       243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence                223446889999999999999999999999999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.7e-27  Score=262.49  Aligned_cols=245  Identities=10%  Similarity=0.047  Sum_probs=203.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcC--CCeEEEEec--cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          446 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~--t~~~~~~l~--~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ..+|.+.|++++|+|++++| ++++.|+.|+|||+.  +++.+..+.  .|...|++++|+|++++|++++.||.|++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            34677899999999999996 899999999999999  888888776  5778999999999999999999999999999


Q ss_pred             cCCCCc---eeEEeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEE
Q 004737          521 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL  593 (732)
Q Consensus       521 l~s~~~---~~~~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll  593 (732)
                      +.+...   ....+.+|...|.+++|+|+  +..+|++++.|+.|++||+.+++++..+.  +...|.+++|+ ++.+|+
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~  256 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL  256 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence            987653   22367889999999999998  24677799999999999999998887643  55679999999 999999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEcC-------------------------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEE
Q 004737          594 AAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWS  646 (732)
Q Consensus       594 ~~s~dg~I~IwDl~t~~~i~~l~~-------------------------h~~~V~sla~spdg~~Lasgs--Dg~I~IWD  646 (732)
                      +++.|+.|++||+++++++..+..                         ....|.+++|+|++++|++++  |+.|+||+
T Consensus       257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            999999999999999998887762                         245799999999999999887  78999999


Q ss_pred             C--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 004737          647 I--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT  693 (732)
Q Consensus       647 l--~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-------dg~I~IwDl~  693 (732)
                      +  ........+..+..+ ..|.+++|+|++ .+++++.       +..|.+|.+.
T Consensus       337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence            9  444444666677776 889999999964 4444433       3457777653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2e-27  Score=257.85  Aligned_cols=245  Identities=9%  Similarity=0.027  Sum_probs=188.1

Q ss_pred             EEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe
Q 004737          476 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  555 (732)
Q Consensus       476 VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs  555 (732)
                      ||++.+.+.+..+..|...|++++|+||+++|++|+.|+ ++|||+..... ...  .+...+..+++.++++.++++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMS--QEMRHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEE--EECSCCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eee--eecCCeEEEEEcCCCCEEEEEEC
Confidence            566777777777889999999999999999999998765 78999886542 222  22235888899988777777888


Q ss_pred             CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737          556 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL  634 (732)
Q Consensus       556 ~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~V~sla~spdg~~L  634 (732)
                      .|+.|++||+.+++++..+.+...+.+++|+++  .+ +...++.|++||+.+. +.+..+..   +...+++++  .++
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~-~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l  150 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FI-VVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL  150 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EE-EEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred             CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EE-EEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence            899999999999999999998889999999886  33 3346899999999987 55554443   445566777  666


Q ss_pred             EEE--e-CCeEEEEECCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCeE
Q 004737          635 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT  697 (732)
Q Consensus       635 asg--s-Dg~I~IWDl~t~~~~------------~-~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~-I~IwDl~t~~~  697 (732)
                      +++  + ||.|++||+.++...            . ++..+..|...|.+++|+|++.+|++++.|++ |++||+.+++.
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            664  4 899999999875310            1 26778899999999999999999999999998 99999999988


Q ss_pred             E-EEc-c-CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          698 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       698 ~-~~~-~-h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      + .+. + |...|.+++|+|++++|++++.|+.|+|||
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            8 555 4 999999999999999999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=6.1e-26  Score=250.29  Aligned_cols=263  Identities=11%  Similarity=0.121  Sum_probs=220.7

Q ss_pred             CCceeeeeecCCCceeEEEE--EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQ--LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~--~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      .+..+++|+..++.....+.  .+.+|.+.|.+++|+++++++++++.|+.|++||+++++.+..+..|...+.+++|+|
T Consensus       142 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  221 (433)
T 3bws_A          142 EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP  221 (433)
T ss_dssp             TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET
T ss_pred             CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC
Confidence            35668899988876543222  4568999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-------CCCcEEEEECCCCeeeeEE
Q 004737          503 SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-------NNSEIRYWSINNGSCAGVF  574 (732)
Q Consensus       503 dg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-------~Dg~I~iWDl~t~~~i~~~  574 (732)
                      +++++++++ .|+.|++||+.++. .+..+.. ...+.+++|+|++..+++++.       .|+.|++||+.+++.+..+
T Consensus       222 ~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~  299 (433)
T 3bws_A          222 IRDLVYCSNWISEDISVIDRKTKL-EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI  299 (433)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTE-EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCCcEEEEECCCCc-EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence            999886554 79999999998765 3555554 456999999999876665443       5889999999999988888


Q ss_pred             eccCCeeEEEEeCCCCEEEEE-EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-------------
Q 004737          575 KCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-------------  639 (732)
Q Consensus       575 ~~~~~i~~v~~sp~g~~ll~~-s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-------------  639 (732)
                      .+...+..++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|+|++++|++++ +             
T Consensus       300 ~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~  378 (433)
T 3bws_A          300 GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL  378 (433)
T ss_dssp             EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred             cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence            777789999999999876555 678999999999998888776 778899999999999888877 2             


Q ss_pred             --CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 004737          640 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE  694 (732)
Q Consensus       640 --g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t  694 (732)
                        |.|++||+.++   +.+..+.. ...+.+++|+|++++|++++. ++.|++|++..
T Consensus       379 ~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          379 VLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             SCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence              49999999887   56666654 567899999999999998886 99999999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=8.3e-26  Score=259.78  Aligned_cols=300  Identities=10%  Similarity=0.060  Sum_probs=242.0

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEc--CCCeEEEEeccCCCceEEEEEcC-
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSP-  502 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~--~t~~~~~~l~~h~~~V~~l~fsp-  502 (732)
                      +..+.+||..++..   +.++..+.. +.+++|+|||++|++++.|+.|.+||+  .+++.+.++. +...+..++|+| 
T Consensus       158 d~~V~v~D~~t~~~---~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~  232 (543)
T 1nir_A          158 AGQIALVDGDSKKI---VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKF  232 (543)
T ss_dssp             GTEEEEEETTTCCE---EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCS
T ss_pred             CCeEEEEECCCceE---EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCC
Confidence            45667788777754   344553333 999999999999999999999999999  8999988887 455689999999 


Q ss_pred             ---CCCeEEEEeC-CCeEEEEecCCCCceeEEeec----------CC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          503 ---SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       503 ---dg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~----------h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                         ||++|++++. +++|.|||..+.+. +..+..          |. ..+..+.++|++..++++...++.|.+||+.+
T Consensus       233 ~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          233 KGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             TTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             cCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence               9999999885 89999999988763 555443          22 37899999999999999999999999999988


Q ss_pred             Ceeee--EEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEEEeCC-CCEEEEEe-
Q 004737          568 GSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVCWNTS-GEYLASVS-  638 (732)
Q Consensus       568 ~~~i~--~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~----h~~~V~sla~spd-g~~Lasgs-  638 (732)
                      .+.+.  .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+..    |.+....+ ++|+ +.+++++. 
T Consensus       312 ~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~  390 (543)
T 1nir_A          312 IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL  390 (543)
T ss_dssp             SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence            76554  4455556888999999998887765 78999999999999888774    55444443 4677 66677765 


Q ss_pred             -CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEE-------cCCeEEEEECCCCeEE-EE-----
Q 004737          639 -DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG-------CYETLELWNMTENKTL-TL-----  700 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-------~dg~I~IwDl~t~~~~-~~-----  700 (732)
                       |++|.+||+.+...    .+++.++..+...+..+.|+|++++|++..       .+++|.|||+.+++.. ..     
T Consensus       391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~  470 (543)
T 1nir_A          391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE  470 (543)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred             CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh
Confidence             78999999987322    488999999988889999999999999987       2669999999988755 32     


Q ss_pred             ----ccCCCCeeEEEEeCCCCEEEEEE-----CCCeEEEeC
Q 004737          701 ----SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK  732 (732)
Q Consensus       701 ----~~h~~~V~sla~spdg~~LaSgs-----~DG~I~IWD  732 (732)
                          ..+...+..++|+|+|+.|+++.     .|+.|.|||
T Consensus       471 ~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          471 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             HHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             hcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence                35678899999999999888763     479999997

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.9e-26  Score=244.90  Aligned_cols=260  Identities=13%  Similarity=0.059  Sum_probs=193.3

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC-
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-  503 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd-  503 (732)
                      .+..+++|+..++..++.+.++..|..+|..+.|.||-.-|++..- |                .-+...|..++|+|| 
T Consensus        61 ~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~----------------~~~~~~v~sla~spd~  123 (356)
T 2w18_A           61 CEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-G----------------NLEIREIRALFCSSDD  123 (356)
T ss_dssp             ESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-C----------------SSSEEEEEEECC----
T ss_pred             ccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-c----------------cccccceEEEEECCCc
Confidence            3567899999999999999999999999999999998654443221 0                124567999999999 


Q ss_pred             ---CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe--CCCcEEEEECC-CCeeeeEEe-c
Q 004737          504 ---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN-NGSCAGVFK-C  576 (732)
Q Consensus       504 ---g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~-t~~~i~~~~-~  576 (732)
                         +.++++++.+  ++||++.++                        .++.++.  .|+.|++|++. +++.+..+. +
T Consensus       124 ~~~~~~l~s~g~~--~~v~~l~~g------------------------~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~  177 (356)
T 2w18_A          124 ESEKQVLLKSGNI--KAVLGLTKR------------------------RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM  177 (356)
T ss_dssp             --CCEEEEEEEEE--EEEEEETTT------------------------EEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred             cccccEEEeCCCe--EEEEecCCC------------------------cEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence               8899998744  778866432                        2333322  35566666662 344444443 3


Q ss_pred             cCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEeCCCCEE------------EEEe
Q 004737          577 QSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS  638 (732)
Q Consensus       577 ~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~V~sla~spdg~~L------------asgs  638 (732)
                      ...+..++|++   ++..|++++.|++|+|||+++++++.++.+|.   ..+.+++|+|+|.++            ++|+
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs  257 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS  257 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence            35578888888   77999999999999999999999999998754   367788999999887            4456


Q ss_pred             -CCeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCee-EE
Q 004737          639 -DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SL  710 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~-----~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~-sl  710 (732)
                       |++|++||..++   +++..+     .+|...+.+..++  +.++++++.|++|+|||+.+++++ ++.+|...+. .+
T Consensus       258 ~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v  332 (356)
T 2w18_A          258 PVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV  332 (356)
T ss_dssp             CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred             CCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence             889999999887   555443     2444445444444  778999999999999999999988 6778877655 68


Q ss_pred             EEeCCCCEEEEEECCCeEEEeC
Q 004737          711 AASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       711 a~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|+||+++|++|+.|++|+|||
T Consensus       333 afSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          333 KWSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             EECSSSSEEEEECTTSCEEEEE
T ss_pred             EECCCCCEEEEEECCCcEEEec
Confidence            9999999999999999999997

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=3.6e-26  Score=253.74  Aligned_cols=283  Identities=12%  Similarity=0.075  Sum_probs=230.3

Q ss_pred             CCceeeeeec--CCCceeEEEEEecCCCCCeEEEEEcC--------------CCCEEEEEECC------CcEEEEEcCCC
Q 004737          425 RDRVGRSAEV--GKGFTFTEFQLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESF  482 (732)
Q Consensus       425 ~d~~~r~wd~--~~g~~~~~v~~l~~H~~~V~~lafSp--------------dg~~Lasgs~D------g~I~VWd~~t~  482 (732)
                      .+..+++||+  .++..+. -..+.+|...|.++++++              .+..++.++.+      +.|++||++. 
T Consensus        91 ~~~~i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-  168 (415)
T 2hqs_A           91 YNVAYQLVDTGGAPGTVLA-QNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-  168 (415)
T ss_dssp             EEEEEEEEECSSSTTCEEE-EEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-
T ss_pred             EEEEEEEEeCCCCCCCEEe-eeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-
Confidence            4557899999  8886432 245788999898888875              15566666554      7999999975 


Q ss_pred             eEEEEeccCCCceEEEEEcCCCCeEEEEeCCC---eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737          483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  559 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~  559 (732)
                      .....+..|...|.+++|+|||++|++++.|+   .|++||+.+++.  ..+..|...+.+++|+|++..++++++.++.
T Consensus       169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~  246 (415)
T 2hqs_A          169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGS  246 (415)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence            45667778999999999999999999999885   999999998763  4567788899999999999888878876655


Q ss_pred             --EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737          560 --IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL  634 (732)
Q Consensus       560 --I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~L  634 (732)
                        |++||+.++++.....+...+.+++|+|++.+|++++.+ +  .|++||+.+++. ..+..+...+.+++|+|+|++|
T Consensus       247 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l  325 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFM  325 (415)
T ss_dssp             CEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEE
Confidence              999999988875555555678999999999999988864 4  788889988764 3455577789999999999999


Q ss_pred             EEEe-C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeEEEEccCCCCe
Q 004737          635 ASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLV  707 (732)
Q Consensus       635 asgs-D---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~~~~~~h~~~V  707 (732)
                      ++++ +   ..|++||+.++.   + ..+..+. .+.+++|+|++++|++++.++   .|++||+..+....+..|.+.|
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v  400 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGG---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV  400 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCC---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEE
T ss_pred             EEEECcCCceEEEEEECCCCC---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCC
Confidence            9887 4   389999998863   3 3344443 899999999999999998877   7999999988888889999999


Q ss_pred             eEEEEeCCCC
Q 004737          708 SSLAASTVNG  717 (732)
Q Consensus       708 ~sla~spdg~  717 (732)
                      .+++|+|...
T Consensus       401 ~~~~~~~~~~  410 (415)
T 2hqs_A          401 KFPAWSPYLH  410 (415)
T ss_dssp             EEEEECCCCC
T ss_pred             cCCccccccc
Confidence            9999999754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.9e-26  Score=246.53  Aligned_cols=254  Identities=11%  Similarity=0.106  Sum_probs=197.6

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC---------CCeEEEEec-cCC
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE---------SFTVKSTLE-EHT  492 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~---------t~~~~~~l~-~h~  492 (732)
                      .+.|..+++|+..++.....+.     ...|.++.|+|+   +++++.|++|++|+..         +++.+..+. .|.
T Consensus        54 g~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~  125 (343)
T 3lrv_A           54 RCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSA  125 (343)
T ss_dssp             EEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCS
T ss_pred             ECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCC
Confidence            3457788889988886655544     466888999988   9999999999999665         555444443 677


Q ss_pred             CceEEEEEcC--CCCeEEEEeCCCeEEEEecCCCCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004737          493 QWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  569 (732)
Q Consensus       493 ~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~  569 (732)
                      +.|.+++|+|  ++++|++++.||+|++||++++.. ...+ ..|...|.+++|+|++ .+|++|+.||.|++||+++++
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTT
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCC
Confidence            8999999999  999999999999999999998775 4444 4456689999999996 677799999999999999998


Q ss_pred             ee-eEEec--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEE--EEEEeCCCCEEEEEe--C
Q 004737          570 CA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVH--SVCWNTSGEYLASVS--D  639 (732)
Q Consensus       570 ~i-~~~~~--~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~V~--sla~spdg~~Lasgs--D  639 (732)
                      .+ ..+..  ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+..   |...+.  +++|+|++++|++++  |
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence            77 66654  67799999999999999999 55999999998866544433   333443  699999999999976  8


Q ss_pred             CeEEEEECCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEECCC
Q 004737          640 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       640 g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp---dg~~L~sgs~dg~I~IwDl~t  694 (732)
                      +.|+||++......  ...     .++..+.|.+   +...+++++.|+.+.++-...
T Consensus       283 ~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          283 NSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             TEEEEEEECTTTCS--EEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             CcEEEEEEcccccc--eEe-----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            89999999765321  111     4567788888   888999999999888875443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.7e-25  Score=246.66  Aligned_cols=273  Identities=15%  Similarity=0.170  Sum_probs=219.1

Q ss_pred             CCeEEEEEcCCCC-EEEEEE----CCC----cEEEEEc--CCCeEE--EEeccCCCceEEEEEcC--------------C
Q 004737          451 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S  503 (732)
Q Consensus       451 ~~V~~lafSpdg~-~Lasgs----~Dg----~I~VWd~--~t~~~~--~~l~~h~~~V~~l~fsp--------------d  503 (732)
                      ..|...+|.+.|. ++++|+    .||    .|+|||+  .+++.+  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4677888888775 566776    467    8999999  888877  45888888888877764              1


Q ss_pred             CCeEEEEeCC------CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEE
Q 004737          504 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF  574 (732)
Q Consensus       504 g~~Lasgs~D------g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~~~i~~~  574 (732)
                      +..+++++.+      +.|++||++..  ..+.+.+|...|.+++|+|++..++ +++.+   ..|++||+.++++....
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~--~~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY--NQFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC--SCEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC--CCEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence            5666666654      79999999853  3577788999999999999987665 55545   49999999999887666


Q ss_pred             eccCCeeEEEEeCCCCEEEEE-EcCC--eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEEC
Q 004737          575 KCQSGATQMRFQPRLGRILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI  647 (732)
Q Consensus       575 ~~~~~i~~v~~sp~g~~ll~~-s~dg--~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl  647 (732)
                      .+...+.+++|+|++..|++. +.++  .|++||+++++. ..+..|...+.+++|+|||++|++++  ++  .|++||+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence            566779999999999988854 4454  599999998876 56777888999999999999998877  34  6888898


Q ss_pred             CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737          648 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  724 (732)
Q Consensus       648 ~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~  724 (732)
                      .++.    ...+..+...+.+++|+|+|++|++++.+   ..|++||+.+++...+..|. .+.+++|+|++++|++++.
T Consensus       299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            8763    23344566788999999999999988875   48999999999887776665 8999999999999999887


Q ss_pred             CC---eEEEeC
Q 004737          725 DK---CVKIWK  732 (732)
Q Consensus       725 DG---~I~IWD  732 (732)
                      |+   .|++||
T Consensus       374 ~~~~~~l~~~d  384 (415)
T 2hqs_A          374 QGMGSVLNLVS  384 (415)
T ss_dssp             ETTEEEEEEEE
T ss_pred             CCCccEEEEEE
Confidence            77   788885

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=1e-25  Score=247.89  Aligned_cols=225  Identities=11%  Similarity=0.093  Sum_probs=172.1

Q ss_pred             CCCCceeeeeecCCCcee--EEEEEecCCCCCeEEEEEcC--------CCCEEEEEECCCcEEEEEcCCCeEEEEeccCC
Q 004737          423 DPRDRVGRSAEVGKGFTF--TEFQLIPASTSKVESCHFSP--------DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT  492 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~--~~v~~l~~H~~~V~~lafSp--------dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~  492 (732)
                      .+.|..+|+|+...+...  ..+..+.+|.+.|++++|+|        |+++||+|+.|++|+|||+.++..+..+..|.
T Consensus       107 ~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~  186 (393)
T 4gq1_A          107 VCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLS  186 (393)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECS
T ss_pred             EeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCC
Confidence            445788999998887543  34556899999999999998        89999999999999999999988888888899


Q ss_pred             CceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeE------------------------EeecCCcceEEEEEc-CC
Q 004737          493 QWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLR------------------------TFTGHSTTVMSLDFH-PS  546 (732)
Q Consensus       493 ~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~------------------------~l~~h~~~V~sl~fs-pd  546 (732)
                      ..|.+++|+|++ .+|++++.|++|++||+.++.....                        ...+|...|.++.|+ ++
T Consensus       187 ~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d  266 (393)
T 4gq1_A          187 SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD  266 (393)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT
T ss_pred             CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC
Confidence            999999999987 4899999999999999987643211                        124678889999998 56


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeeEEecc-------------------CCeeEEEEeC-CCCE-EEEEEcCCeEEEEE
Q 004737          547 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQP-RLGR-ILAAAIENYISILD  605 (732)
Q Consensus       547 g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-------------------~~i~~v~~sp-~g~~-ll~~s~dg~I~IwD  605 (732)
                      + ..+++++.|+.+++||+..+.....+..+                   .......|.+ .++. +++++.||.|++||
T Consensus       267 g-~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd  345 (393)
T 4gq1_A          267 G-SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLIN  345 (393)
T ss_dssp             T-CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEE
T ss_pred             C-CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEE
Confidence            4 56679999999999999877655443311                   1122233443 3344 44566799999999


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECC
Q 004737          606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG  648 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~  648 (732)
                      +.++.+...+..|..+|.+++|+|||++|++++++.+.+|.+.
T Consensus       346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             TTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            9999888888889999999999999999999998778888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=2.5e-23  Score=222.11  Aligned_cols=268  Identities=10%  Similarity=0.029  Sum_probs=216.8

Q ss_pred             CCeEEEEEcCCCCEEEEEEC-------CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecC
Q 004737          451 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE  522 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~-------Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~  522 (732)
                      ..+..++|+|++++|++++.       ++.|.+||..+++.+..+... ..+..++|+|++++++++ ..++.|.+||..
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            45889999999999888874       568999999999988888643 447889999999966555 557999999999


Q ss_pred             CCCceeEEeecCCc---------ceEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCE
Q 004737          523 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR  591 (732)
Q Consensus       523 s~~~~~~~l~~h~~---------~V~sl~fspdg~~llaSg-s~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~  591 (732)
                      +++. +..+..+..         .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+..++|+|++++
T Consensus       120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            8764 444544332         278899999988777666 458899999999999988887 4455889999999999


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK  665 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~  665 (732)
                      +++++.++.|.+||+.+++.+..+..    +...+.+++|+|+++++++++  ++.|.+||+.++   +.+..+....  
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~--  273 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE--  273 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence            99999999999999999988877664    456788999999999887776  589999999887   4454444332  


Q ss_pred             eEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737          666 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       666 I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                      ...++|+|++++++++. .++.|.+||+.+++.+........+.+++|+|++++|+.+..+
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            25689999999877777 5789999999999988555555688999999999977776655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.4e-23  Score=222.70  Aligned_cols=274  Identities=7%  Similarity=0.133  Sum_probs=207.2

Q ss_pred             EEEcCCCCE-EEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC-CCeEEEEecCCCCceeEEeec
Q 004737          456 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       456 lafSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      ..|.+++.+ +++++.++.|.+||..+++.+..+..+...+ +++|+|+++++++++. ++.|.+||+.++......+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            345665555 6777789999999999999988887777777 9999999997776665 899999999987753566666


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCe-EEEEECCC
Q 004737          534 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET  608 (732)
Q Consensus       534 h~~~V~sl~fspdg~~llaSgs~D-g--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~-I~IwDl~t  608 (732)
                      +..++.+++|+|+++.++ ++..+ +  .|++||+.+++.+..+........++|+|+++++++++. ++. |.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            666666699999987766 54444 3  899999999999988888788899999999987766654 478 99999875


Q ss_pred             CeEE----EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737          609 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       609 ~~~i----~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      ...+    .........+.+++|+|+|+++++++  ++.|++||+.++.....+..+.. ...+..++|+|++++++++.
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence            4322    12223455689999999999776665  78999999988744222555553 46678899999999887776


Q ss_pred             c-CCeEEEEECCCCeEE---EEccC----CC---CeeEEEEeCCCCEEEEEEC-CCeEEEeC
Q 004737          683 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK  732 (732)
Q Consensus       683 ~-dg~I~IwDl~t~~~~---~~~~h----~~---~V~sla~spdg~~LaSgs~-DG~I~IWD  732 (732)
                      . ++.|.+||+.+++..   .+..+    ..   .+..++|+|++++|++++. ++.|.|||
T Consensus       240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence            4 568999999998873   11111    22   2356899999998876664 66999996

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=2e-23  Score=221.25  Aligned_cols=266  Identities=9%  Similarity=0.133  Sum_probs=197.0

Q ss_pred             EEEEEECCCcEEEEEcC-CC--eEEEEeccCCCceEEEEEcCCCCeEEEEeCC-CeEEEEecC--CCCce-eEEeecCCc
Q 004737          464 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST  536 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~-t~--~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g~I~IWDl~--s~~~~-~~~l~~h~~  536 (732)
                      ++++++.|+.|++||+. ++  +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|+++  ++... +..+..+. 
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence            34444779999999995 33  333333 477789999999999999998887 999999998  44432 23344333 


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CCCeeeeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC-CeE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC  611 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl---~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t-~~~  611 (732)
                      .+.+++|+|++..+++++..++.|++||+   ...+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            78999999999878777777899999999   4445555565666789999999999998888 789999999987 644


Q ss_pred             EE----EEcC-CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC-CceeEEEee---cC---CCceEEEEEeCCCCE
Q 004737          612 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS  677 (732)
Q Consensus       612 i~----~l~~-h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~-~~~~i~~~~---~~---~~~I~sl~fspdg~~  677 (732)
                      ..    .+.. ....+.+++|+|++++|++++  ++.|.+||+.... .........   ..   ...+..++|+|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            32    2232 345788999999999776655  7899999996421 112222222   11   235678999999998


Q ss_pred             EEEEE-cCCeEEEEECC--CC--eEE-EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737          678 LLVIG-CYETLELWNMT--EN--KTL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  732 (732)
Q Consensus       678 L~sgs-~dg~I~IwDl~--t~--~~~-~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD  732 (732)
                      |+++. .++.|++||+.  ++  +.+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            88666 67899999998  33  333 333333 489999999999888888 689999994

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=1.2e-23  Score=224.68  Aligned_cols=218  Identities=11%  Similarity=0.096  Sum_probs=164.2

Q ss_pred             cCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEEcCCCeEEEE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          447 PASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       447 ~~H~~~V~~lafSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      .-|.+.|++++|+||    +.++++++.  .+.||++.+++.+.. ..+                     .|+.|++|++
T Consensus       108 ~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g---------------------~d~~V~~~~~  164 (356)
T 2w18_A          108 NLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTL---------------------SDQQVEVMTF  164 (356)
T ss_dssp             SSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSS---------------------TTCEEEEEEE
T ss_pred             cccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccC---------------------CCCcEEEEEE
Confidence            446678999999999    889999884  477886544443333 122                     3666666666


Q ss_pred             CCCCceeEEeecCCcceEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEEecc----CCeeEEEEeCCCCEE---
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRI---  592 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----~~i~~v~~sp~g~~l---  592 (732)
                      ......+..+.+|...+..++|++  +...+|++++.|++|+|||++++++++++..+    ..+.+++|+|++..+   
T Consensus       165 s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~  244 (356)
T 2w18_A          165 AEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVL  244 (356)
T ss_dssp             CTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEE
T ss_pred             CCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEe
Confidence            443334556678888899999988  23578889999999999999999999999742    246778999998876   


Q ss_pred             ---------EEEEcCCeEEEEECCCCeEEEEE-----cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          593 ---------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       593 ---------l~~s~dg~I~IwDl~t~~~i~~l-----~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                               ++++.|++|++||..+++.+..+     .+|...+.+.+++  +.++++++ |++|+|||+.++   +++.
T Consensus       245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG---k~l~  319 (356)
T 2w18_A          245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG---QCTA  319 (356)
T ss_dssp             C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC---SEEE
T ss_pred             ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC---cEEE
Confidence                     45677899999999999887765     3676666555554  88899998 999999999998   7888


Q ss_pred             EeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          658 ELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       658 ~~~~~~~~I~-sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ++.+|...+. .++|+|++++|++++.|++|+|||+
T Consensus       320 tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          320 LLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9988876655 5899999999999999999999995

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.2e-23  Score=241.91  Aligned_cols=268  Identities=9%  Similarity=0.063  Sum_probs=215.0

Q ss_pred             EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec--CCCCceeEEeecC
Q 004737          457 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH  534 (732)
Q Consensus       457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl--~s~~~~~~~l~~h  534 (732)
                      +|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+  .+.+ .+..+. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence            3789999999999999999999999999999974433 899999999999999999999999999  6654 355555 4


Q ss_pred             CcceEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEEecc------------CCeeEEEEeCCCCEEEEEE-c
Q 004737          535 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I  597 (732)
Q Consensus       535 ~~~V~sl~fsp----dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~------------~~i~~v~~sp~g~~ll~~s-~  597 (732)
                      ...+..++|+|    +++.+++++..++.|.+||..+++++..+...            ..+..+.+++++..+++.. .
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            55689999999    98877766667999999999999998887642            2578899999887766554 5


Q ss_pred             CCeEEEEECCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec----CCCceEEE
Q 004737          598 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC  669 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl  669 (732)
                      ++.|.+||+.+.+.+.  .+. +...+.+++|+|++++|++++  +++|.+||+.++   +++..+..    |......+
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred             CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence            7899999998764332  443 566788999999999887765  789999999987   66666553    43333333


Q ss_pred             EEeCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EEccCCCCeeEEEEeCCCCEEEEEE-------CCCeEEEeC
Q 004737          670 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK  732 (732)
Q Consensus       670 ~fspdg~~L~sgs--~dg~I~IwDl~t-------~~~~-~~~~h~~~V~sla~spdg~~LaSgs-------~DG~I~IWD  732 (732)
                       ++|++..+++.+  .+++|.+||+.+       .+++ ++..|...+..++|+|++++|++++       .+++|.|||
T Consensus       377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence             578744444444  478999999988       7777 7778888899999999999999987       277999997

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=9.1e-24  Score=250.13  Aligned_cols=276  Identities=14%  Similarity=0.092  Sum_probs=212.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEEC-CC-----cEEEEEcCCCeEEEEeccCCC------------------------ceEEEE
Q 004737          450 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR  499 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~-Dg-----~I~VWd~~t~~~~~~l~~h~~------------------------~V~~l~  499 (732)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            446999999999999999998 88     899999999988777765433                        388999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCCCC-ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC
Q 004737          500 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS  578 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s~~-~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~  578 (732)
                      |+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.+++ ++ ++.|++||+.+++.........
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~  192 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS  192 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence            9999999999986 899999999761 014556778888999999999876664 44 5689999999887765544322


Q ss_pred             C-----------------eeEEEEeCCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 004737          579 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET  608 (732)
Q Consensus       579 ~-----------------i~~v~~sp~g~~ll~~s~dg---------------------------------~I~IwDl~t  608 (732)
                      .                 +..+.|+|++++|++++.|+                                 .|++||+.+
T Consensus       193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~  272 (741)
T 2ecf_A          193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE  272 (741)
T ss_dssp             SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred             cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence            2                 47799999999999988765                                 889999998


Q ss_pred             -CeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe------CCeEEEEECCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 004737          609 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF  675 (732)
Q Consensus       609 -~~~i~~l~--~h~~~V~sla~spdg~~Lasgs------Dg~I~IWDl~t~~~~~~i~~~~~~~~----~I~sl~fspdg  675 (732)
                       ++......  .|...+.+++| |||++|++++      +..|++||+.++.   +...+..+..    .+..++|+|||
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg  348 (741)
T 2ecf_A          273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG  348 (741)
T ss_dssp             TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred             CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence             77654433  37778999999 9999988765      2479999999874   3333333322    34678999999


Q ss_pred             CEEEEEEcCCeEEEEECC-CCeEEEEccCCCCeeEE-EEeCCCCEEEEE-ECCC--eEEEeC
Q 004737          676 PSLLVIGCYETLELWNMT-ENKTLTLSAHDKLVSSL-AASTVNGMVASA-SHDK--CVKIWK  732 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~-t~~~~~~~~h~~~V~sl-a~spdg~~LaSg-s~DG--~I~IWD  732 (732)
                      +++++++.++.+.||.+. ++....+..|...|..+ .|+|+++.|+.. +.|+  .++||+
T Consensus       349 ~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          349 SILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             eEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            988888888866666543 23355677888888887 599999977654 4455  888984

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=1.4e-22  Score=214.68  Aligned_cols=289  Identities=11%  Similarity=0.074  Sum_probs=205.0

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEEcC--CCe--EEEEeccCCCceEEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE--SFT--VKSTLEEHTQWITDVR  499 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D-g~I~VWd~~--t~~--~~~~l~~h~~~V~~l~  499 (732)
                      .+..+++|+.........+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++.  +++  .+..+..+. .+.+++
T Consensus        13 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   90 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHIS   90 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEE
T ss_pred             CCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEE
Confidence            3567788887533333334333 477789999999999999988886 999999997  554  344555444 789999


Q ss_pred             EcCCCCeEEEEeC-CCeEEEEecCCCC--ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE--
Q 004737          500 FSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV--  573 (732)
Q Consensus       500 fspdg~~Lasgs~-Dg~I~IWDl~s~~--~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~--  573 (732)
                      |+|++++|++++. ++.|.+||+..+.  .....+. ....+.+++|+|+++.+++++..++.|++||+.+ ++....  
T Consensus        91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  169 (343)
T 1ri6_A           91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP  169 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             EcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence            9999998877765 8899999995221  1233333 3346899999999887776665899999999987 654322  


Q ss_pred             --Ee--ccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEc---CC---CCCEEEEEEeCCCCEEEEEe
Q 004737          574 --FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQ---GH---KNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       574 --~~--~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~---~h---~~~V~sla~spdg~~Lasgs  638 (732)
                        +.  ....+..++|+|++.++++++ .++.|.+||+..  ++.  ...+.   ..   ...+.+++|+|++++|+++.
T Consensus       170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          170 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence              22  234678899999999887776 689999999953  322  22222   11   24677899999999887554


Q ss_pred             --CCeEEEEECCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCeEE--EEccCCCCeeEE
Q 004737          639 --DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTL--TLSAHDKLVSSL  710 (732)
Q Consensus       639 --Dg~I~IWDl~t~-~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~Iw--Dl~t~~~~--~~~~h~~~V~sl  710 (732)
                        ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|  |..+++..  ..........++
T Consensus       250 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i  328 (343)
T 1ri6_A          250 RTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWV  328 (343)
T ss_dssp             TTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred             cCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeE
Confidence              789999999842 12244555554444 88999999999998888 57899999  55566544  222233567788


Q ss_pred             EEeCCCC
Q 004737          711 AASTVNG  717 (732)
Q Consensus       711 a~spdg~  717 (732)
                      +|.++.+
T Consensus       329 ~~~~~~~  335 (343)
T 1ri6_A          329 VVNAHEG  335 (343)
T ss_dssp             EEEEEC-
T ss_pred             EEEcccC
Confidence            8887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=1.3e-23  Score=216.60  Aligned_cols=257  Identities=13%  Similarity=0.089  Sum_probs=200.8

Q ss_pred             CCCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEeccC-CCceEEEE
Q 004737          422 ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVR  499 (732)
Q Consensus       422 ~~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h-~~~V~~l~  499 (732)
                      ..+.+..+++|+..++..    ..+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++
T Consensus        17 ~~~~~~~i~~~d~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKM----RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHG   91 (297)
T ss_dssp             -CCCCEEEEEEETTTTEE----EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred             CCCcceeEEEEeCCCCce----eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceE
Confidence            456788899999888753    34556889999999999999999987 78999999999 8877766666 37789999


Q ss_pred             EcCCCCeEEEEe--CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEEe
Q 004737          500 FSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFK  575 (732)
Q Consensus       500 fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl--~t~~~i~~~~  575 (732)
                      |+|++++|++++  .++.+.||.++........+..+. .+.+++|+|++..+++++..++.+++|++  .+++......
T Consensus        92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~  170 (297)
T 2ojh_A           92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH  170 (297)
T ss_dssp             ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence            999999999998  335555655543222244444443 48999999999888878888999999985  4455544444


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECC-CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-----------Ce
Q 004737          576 CQSGATQMRFQPRLGRILAAAI-ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------EL  641 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~-t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-----------g~  641 (732)
                      ....+.+++|+|++..+++++. ++.+.+|++. .+.....+..|...+.+++|+|++++|++++ +           +.
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            5567899999999998887774 8889999886 4555667777888899999999999998877 4           46


Q ss_pred             EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 004737          642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE  685 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg  685 (732)
                      |++||+.++.. ..+..+..+...+..++|+|++++|++++.+.
T Consensus       251 l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          251 VQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99999987643 34555556788899999999999998887764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=2.8e-23  Score=214.10  Aligned_cols=253  Identities=11%  Similarity=0.090  Sum_probs=195.4

Q ss_pred             EEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-CCceeEEeecC-CcceEEEEEc
Q 004737          467 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH  544 (732)
Q Consensus       467 sgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-~~~~~~~l~~h-~~~V~sl~fs  544 (732)
                      .++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...+.+++|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence            34578999999999988764 445888999999999999999986 88999999998 653 4444455 4678999999


Q ss_pred             CCCCcEEEEEe-CC--CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEE-EEEcCCeEEEEECC--CCeEEEEEcCC
Q 004737          545 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVE--TQVCRLKLQGH  618 (732)
Q Consensus       545 pdg~~llaSgs-~D--g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll-~~s~dg~I~IwDl~--t~~~i~~l~~h  618 (732)
                      |++..+++++. .+  ..|.+|++.++. ...+.....+..++|+|++..++ ++..++.+.+|+++  ++. ...+..+
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~  171 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHG  171 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCS
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccC
Confidence            99876665442 23  445555555554 34444555688899999999887 67788988888853  343 4556668


Q ss_pred             CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------C
Q 004737          619 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------E  685 (732)
Q Consensus       619 ~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----------g  685 (732)
                      ...+.+++|+|++++|++++  ++.++||++....  ..+..+..+...+..++|+|++++|++++.+           .
T Consensus       172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  249 (297)
T 2ojh_A          172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV  249 (297)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred             CCccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence            88999999999999887665  7889999886321  3455666677788999999999999988876           4


Q ss_pred             eEEEEECCCCeEE---EEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          686 TLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       686 ~I~IwDl~t~~~~---~~~~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      .|++||+.+++..   .+..|...|.+++|+|++++|++++.|.
T Consensus       250 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          250 RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            6999999988654   3447888999999999999998887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1e-22  Score=215.33  Aligned_cols=262  Identities=11%  Similarity=0.067  Sum_probs=206.7

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCC--ceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEee-cC----
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH----  534 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~--~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~-~h----  534 (732)
                      ++|++++.++.|.+||+.+++.+..+.....  .+.+++|+|++++++ ++..++.|.+||+.+++. +..+. ++    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence            4789999999999999999999888763322  488999999998765 555678999999998764 33333 22    


Q ss_pred             CcceEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          535 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       535 ~~~V~sl~fspdg~~llaSgs-----------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      ...+.+++|+|+++.++++..           .++.|++||+.+++.+..+.....+..++|+|++++++++  ++.|++
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            226788999999877665531           4799999999999988888776778899999999988887  789999


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC-----------------------eEEEEECCCCCCceeEEE
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg-----------------------~I~IWDl~t~~~~~~i~~  658 (732)
                      ||+.+++.+..+..+.. ...+.|+|++.+++...  ++                       .|.+||+.+++..  ...
T Consensus       159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~  235 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred             EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence            99999988877765431 11337899988766554  22                       4689999887432  334


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +..+...+..++|+|++++++++  ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus       236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            45566678899999999998888  6899999999998875544556789999999999999999999999996

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=5.3e-22  Score=210.59  Aligned_cols=284  Identities=11%  Similarity=0.082  Sum_probs=208.0

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeE-EEEeccCCCceEEEEEcC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~-~~~l~~h~~~V~~l~fsp  502 (732)
                      .+..+++|+..++....   .+..+...+ +++|+|||++|++++. ++.|.+||+.+++. ...+..+..++.+++|+|
T Consensus        18 ~~~~v~~~d~~~~~~~~---~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~   93 (331)
T 3u4y_A           18 HLRRISFFSTDTLEILN---QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP   93 (331)
T ss_dssp             GGTEEEEEETTTCCEEE---EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred             CCCeEEEEeCcccceee---eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC
Confidence            35577888888775433   344556667 9999999997776665 89999999999887 777777777666699999


Q ss_pred             CCCeEEEEeCCC---eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc-EEEEECCCCeee-----eE
Q 004737          503 SLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-IRYWSINNGSCA-----GV  573 (732)
Q Consensus       503 dg~~Lasgs~Dg---~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~-I~iWDl~t~~~i-----~~  573 (732)
                      ++++|+++..++   .|.+||+.+++. +..+.. ...+.+++|+|+++.+++++..++. |.+|++.....+     ..
T Consensus        94 dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~  171 (331)
T 3u4y_A           94 DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF  171 (331)
T ss_dssp             TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred             CCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc
Confidence            999999555553   999999988653 445543 4457999999999888878777788 999998764332     22


Q ss_pred             EeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE---EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEC
Q 004737          574 FKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSI  647 (732)
Q Consensus       574 ~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~---i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl  647 (732)
                      +.....+..++|+|+++++++++. ++.|.+||+.+++.   +..+.. ...+.+++|+|+|++|+++.  ++.|.+||+
T Consensus       172 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          172 ISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             ECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             ccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence            233456889999999998777764 78999999998877   777764 46678999999999887766  678999999


Q ss_pred             CCCCCceeEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCC
Q 004737          648 GSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVN  716 (732)
Q Consensus       648 ~t~~~~~~i~~~~~~----~~---~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg  716 (732)
                      .++.. ..+..+...    ..   ....++|+|++++|++++.+ +.|.+||+.+............-....++|+.
T Consensus       251 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          251 LSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             TTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEECCCC-
T ss_pred             CCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEECCcc
Confidence            88632 113333222    11   22458999999998877765 49999999887665554444333333444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.6e-22  Score=239.42  Aligned_cols=272  Identities=11%  Similarity=0.066  Sum_probs=204.0

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence            3889999999999999986 999999999873  3455677888899999999999999987 56999999987653 33


Q ss_pred             EeecCCcc----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------cEE
Q 004737          530 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR  561 (732)
Q Consensus       530 ~l~~h~~~----------------V~sl~fspdg~~llaSgs~Dg--------------------------------~I~  561 (732)
                      ....+...                +.++.|+|||+.++++...++                                .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            33333322                478999999987775544321                                789


Q ss_pred             EEECCC-CeeeeEEe---ccCCeeEEEEeCCCCEEEEEEc-----CCeEEEEECCCCeEEEEEcCCCC----CEEEEEEe
Q 004737          562 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN  628 (732)
Q Consensus       562 iWDl~t-~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~-----dg~I~IwDl~t~~~i~~l~~h~~----~V~sla~s  628 (732)
                      +||+.+ ++......   +...+..++| |++++|++++.     +..|++||+.++++...+..+..    .+.+++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999988 77654432   2345789999 99999998775     46899999999987776665443    45689999


Q ss_pred             CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEECCC-Ce-EEEEc
Q 004737          629 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS  701 (732)
Q Consensus       629 pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl-~fspdg~~L~sgs~dg---~I~IwDl~t-~~-~~~~~  701 (732)
                      |||+++++++ |+.++||.+....  . ...+..+...+..+ .|+|+++.|++.+.++   .++||++.. +. ...+.
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            9999888877 8878888776321  3 56666777778887 5999999887666544   788998753 43 33443


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECC----CeEEEe
Q 004737          702 AHDKLVSSLAASTVNGMVASASHD----KCVKIW  731 (732)
Q Consensus       702 ~h~~~V~sla~spdg~~LaSgs~D----G~I~IW  731 (732)
                      . ...+..++|+||+++|+....+    ..+.+|
T Consensus       423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~  455 (741)
T 2ecf_A          423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF  455 (741)
T ss_dssp             C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence            3 6778999999999988766543    345555

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.91  E-value=1.8e-22  Score=232.92  Aligned_cols=268  Identities=9%  Similarity=0.041  Sum_probs=206.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCC--
Q 004737          450 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN--  523 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s--  523 (732)
                      ..+|++++|+|||++||+++. |+++.||++++++.......+...|..++|+|| +++++++.   +...+||.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            457999999999999999887 999999999776665444333368999999999 77777775   45566665543  


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC----C
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N  599 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d----g  599 (732)
                      ..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.++++........  .+++|+|+|+++++++.+    .
T Consensus       100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence            22222 33322 2345678999987766666556667799999988776666544  889999999999988876    7


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC--eEEEEECCCCCCceeEEEeecCCCceEEEE------
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV------  670 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~------  670 (732)
                      .|++||+.+++.. .+..|...+..++|+|||++|+++. ++  .|++||+.++   ... .+..+...+..++      
T Consensus       176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~  250 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITW  250 (582)
T ss_dssp             EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEE
T ss_pred             EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccc
Confidence            8999999988765 5677888999999999999999766 77  8999999887   333 5556666666666      


Q ss_pred             --EeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCe---EEEeC
Q 004737          671 --FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK  732 (732)
Q Consensus       671 --fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~---I~IWD  732 (732)
                        |+|||..+++++.++.+++|++  ++...  .+...|.+++|+ +++++++++.+..   |.+||
T Consensus       251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          251 LGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             eeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence              9999988888999999999999  66553  344678999999 9999998887753   55554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=2.6e-23  Score=245.30  Aligned_cols=275  Identities=13%  Similarity=0.152  Sum_probs=206.4

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC---ceEEEEEcCCCCeEEEEeCC---------CeEEEE
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW  519 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~l~fspdg~~Lasgs~D---------g~I~IW  519 (732)
                      .+.+++|+|||+++++ +.|++|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.|.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999998876 7899999999999998888877765   49999999999999999874         788899


Q ss_pred             ecCCCCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCe-----------------
Q 004737          520 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA-----------------  580 (732)
Q Consensus       520 Dl~s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i-----------------  580 (732)
                      |+.++... +....+|...+..++|+|||+.++++.  ++.|++||+.+++....... ...+                 
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            99987641 112234455589999999987776544  37899999998887665543 2222                 


Q ss_pred             -eEEEEeCCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEcCC------C
Q 004737          581 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K  619 (732)
Q Consensus       581 -~~v~~sp~g~~ll~~s~dg----------------------------------~I~IwDl~t~~~i~~l~~h------~  619 (732)
                       ..++|+|+++.|++++.++                                  .|++||+.+++....+..+      .
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             7899999999999887653                                  7999999988765566544      5


Q ss_pred             CCEEEEEEeCCCCEEEEEe-C----CeEEEEECCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 004737          620 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE--  685 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs-D----g~I~IWDl~t~~~~~~i~~~~~-~~~~I----~sl~fspdg~~L~sg--s~dg--  685 (732)
                      ..+.+++|+|||++|++.. .    ..|++||+.++.   +...+.. +...+    ..++|+|||+.|++.  ..++  
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence            6789999999999887765 2    379999998873   3333222 22333    378999999987764  4455  


Q ss_pred             ----eEEEEE-CCCCe---EEEEccCCCCeeE-EEEeCCCCEEEEEECC---CeEEEeC
Q 004737          686 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK  732 (732)
Q Consensus       686 ----~I~IwD-l~t~~---~~~~~~h~~~V~s-la~spdg~~LaSgs~D---G~I~IWD  732 (732)
                          .|++|| ..++.   ...+..+...+.. ++|+||+++|+..+.+   +.++||+
T Consensus       332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence                577888 45555   4444444445554 6999999999876655   7888884

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=2.5e-22  Score=236.59  Aligned_cols=273  Identities=12%  Similarity=0.088  Sum_probs=206.6

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-----CC
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----PD  525 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-----~~  525 (732)
                      ..|.+++|+|| ++++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+     +.
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 6666654 59999999999876544 4567779999999999999995 689999999987     65


Q ss_pred             ceeEEeecCCcc--------------eEEEEEcCCCCcEEEEEe--------------------------------CCCc
Q 004737          526 YSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNSE  559 (732)
Q Consensus       526 ~~~~~l~~h~~~--------------V~sl~fspdg~~llaSgs--------------------------------~Dg~  559 (732)
                      . ......+...              +.++.|+|||+.++++..                                .+..
T Consensus       158 ~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          158 A-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             C-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             c-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence            3 3333333332              489999999877765541                                3467


Q ss_pred             EEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEcC-CCC---CEEEEE
Q 004737          560 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSVC  626 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~dg-----~I~IwDl~t~-~~i~~l~~-h~~---~V~sla  626 (732)
                      |++||+.+++......   ....+..++|+|+++.|++++.++     .|++||+.++ ........ +..   .+.+++
T Consensus       237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence            9999999888655442   224578999999999999988775     8999999998 43333221 222   246789


Q ss_pred             EeC--CCCEEEEEe-CCeEEEEECC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCCe
Q 004737          627 WNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTENK  696 (732)
Q Consensus       627 ~sp--dg~~Lasgs-Dg~I~IWDl~-t~~~~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~dg-----~I~IwDl~t~~  696 (732)
                      |+|  +|++|+++. |+.++||++. ++   ..+..+..+...+.. ++|+|+++.|++++.++     .|+.||+.+++
T Consensus       317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          317 FLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             ECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             eecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            999  999998887 8888888876 33   456666666677776 79999999887776653     67888888876


Q ss_pred             EEEEccCCCCeeEEEEeCCCCEEEEEECC----CeEEEeC
Q 004737          697 TLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK  732 (732)
Q Consensus       697 ~~~~~~h~~~V~sla~spdg~~LaSgs~D----G~I~IWD  732 (732)
                      ...+ .|...+.+++|+||+++|+.++.+    +.|++||
T Consensus       394 ~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          394 TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            4444 477789999999999988876544    4699985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=2.3e-22  Score=248.33  Aligned_cols=292  Identities=8%  Similarity=-0.013  Sum_probs=233.5

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEeccCCCceEEEEEcCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSL  504 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~V~~l~fspdg  504 (732)
                      +...++|....+.   +...+.+|...|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+..++|+|||
T Consensus       182 ~~~~~lw~~~~~~---~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG  256 (1045)
T 1k32_A          182 GTRGKIWIEVNSG---AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG  256 (1045)
T ss_dssp             TTCCEEEEEEETT---EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS
T ss_pred             CCcCCEEEECCCC---CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC
Confidence            3456677654442   33445899999999999998 6777888889999998653 44455666565 46778999999


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeec-----------CCcceEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAG  572 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~-----------h~~~V~sl~fs-pdg~~llaSgs~Dg~I~iWDl~t~~~i~  572 (732)
                      ++|+++ .++.|++||+....  +..+.+           |...+.+++|+ |+|..+++++  ++.|++|++..++...
T Consensus       257 ~~la~~-~~~~i~~~d~~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~  331 (1045)
T 1k32_A          257 RRILFS-KGGSIYIFNPDTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLK  331 (1045)
T ss_dssp             SCEEEE-ETTEEEEECTTTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEE
T ss_pred             CEEEEE-eCCEEEEecCCceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEE
Confidence            999988 48999999995432  334443           34579999999 9987666544  7899999999877655


Q ss_pred             EEeccC-CeeEEEEeCCCCEEEEEEcCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737          573 VFKCQS-GATQMRFQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       573 ~~~~~~-~i~~v~~sp~g~~ll~~s~dg~I~-IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t  649 (732)
                      ...+.. .+..++|+ ++..+++++.++.|. +||+.+++... +.+|...+.+++|+|||++|++++ ++.|++||+.+
T Consensus       332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t  409 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET  409 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence            433444 68889999 999999999888899 99998876554 347888999999999999999988 88999999988


Q ss_pred             CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEE
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV  719 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg----------~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~L  719 (732)
                      +   ........+...+..++|+|||++|++++.++          .|++||+.+++...+..|...+.+++|+|||++|
T Consensus       410 g---~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l  486 (1045)
T 1k32_A          410 G---KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL  486 (1045)
T ss_dssp             C---CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEE
T ss_pred             C---ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEE
Confidence            7   45555556788899999999999998887654          8999999999877888898999999999999999


Q ss_pred             EEEECCCeEEEeC
Q 004737          720 ASASHDKCVKIWK  732 (732)
Q Consensus       720 aSgs~DG~I~IWD  732 (732)
                      ++++.++...+|+
T Consensus       487 ~~~s~~~~~~~~~  499 (1045)
T 1k32_A          487 YYLSYRSLDPSPD  499 (1045)
T ss_dssp             EEEESCCCCCEEC
T ss_pred             EEEecccCCcCcc
Confidence            9999988877774

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.90  E-value=7e-21  Score=203.99  Aligned_cols=270  Identities=14%  Similarity=0.144  Sum_probs=191.7

Q ss_pred             CceeeeeecCC-CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEEcCCCe--EEEEeccCCCceEEEE
Q 004737          426 DRVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVR  499 (732)
Q Consensus       426 d~~~r~wd~~~-g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~---Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~  499 (732)
                      +..+.+|.++. ...+..+.. ..+...+..++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~-~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGL-LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEE-EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeee-eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence            34455555543 122333333 34456788899999999 555543   6899999998776  3444455777899999


Q ss_pred             EcCCCCeEEEEe-CCCeEEEEecCCCCc-e-eEEeec---------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-
Q 004737          500 FSPSLSRLATSS-ADRTVRVWDTENPDY-S-LRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-  566 (732)
Q Consensus       500 fspdg~~Lasgs-~Dg~I~IWDl~s~~~-~-~~~l~~---------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-  566 (732)
                      |+||+++|++++ .++.|.+|++..... . +..+..         +...+.+++|+|+++ ++++...++.|++||+. 
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECT
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECC
Confidence            999999998888 679999999964321 1 222221         123488999999988 77777778999999998 


Q ss_pred             CCeeeeE--Ee--ccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEcCCC------CCEEEEEEeCCC
Q 004737          567 NGSCAGV--FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSG  631 (732)
Q Consensus       567 t~~~i~~--~~--~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~~h~------~~V~sla~spdg  631 (732)
                      +++....  +.  ....+..++|+|+++++++++ .++.|.+|++..  ++.  +..+....      ..+..++|+|||
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            5544322  22  223578899999999777765 478999999874  543  23333322      358899999999


Q ss_pred             CEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCeEE
Q 004737          632 EYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL  698 (732)
Q Consensus       632 ~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~Iw--Dl~t~~~~  698 (732)
                      ++|+++.  ++.|.+|++........+..+..+...+..++|+|++++|++++.+ +.|.+|  |..++++.
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            9885544  7899999997432335566666666778899999999999998876 799999  55677766

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=6.3e-22  Score=244.39  Aligned_cols=291  Identities=11%  Similarity=0.058  Sum_probs=230.7

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEEcCCCeEEEEeccCCCce------
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWI------  495 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~h~~~V------  495 (732)
                      .+.+|+...+.    ...+.+|...|.+++|||||++||+++.+      ..|++||+.+++ ...+..|...+      
T Consensus        34 ~l~~~~~~gg~----~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~  108 (1045)
T 1k32_A           34 DLWEHDLKSGS----TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMF  108 (1045)
T ss_dssp             EEEEEETTTCC----EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEEC
T ss_pred             cEEEEECCCCc----EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccc
Confidence            56778876663    45577899999999999999999988643      479999998877 56788888888      


Q ss_pred             -EEEEEcCCCCeEEEEeCC------CeEEEEecCCCCce-----------------------------------------
Q 004737          496 -TDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS-----------------------------------------  527 (732)
Q Consensus       496 -~~l~fspdg~~Lasgs~D------g~I~IWDl~s~~~~-----------------------------------------  527 (732)
                       .+++|+|||+++++++.+      ..|.+||+.++...                                         
T Consensus       109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw  188 (1045)
T 1k32_A          109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW  188 (1045)
T ss_dssp             SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred             cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence             999999999977777654      35777877543211                                         


Q ss_pred             -------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC
Q 004737          528 -------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       528 -------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                             ...+.+|...+.++.|+++  .++++++.|+.+.+|++.. +.....+..+..+...+|+|++..++++ .++
T Consensus       189 ~~~~~~~~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~  265 (1045)
T 1k32_A          189 IEVNSGAFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGG  265 (1045)
T ss_dssp             EEEETTEEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETT
T ss_pred             EECCCCCeEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCC
Confidence                   1223457778888999876  6777888889999998653 3344455545567788999999988877 589


Q ss_pred             eEEEEECCCCeEEEEEcC-----------CCCCEEEEEEe-CCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCC-ce
Q 004737          600 YISILDVETQVCRLKLQG-----------HKNQVHSVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN-KF  666 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~-----------h~~~V~sla~s-pdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~-~I  666 (732)
                      .|++||+...... .+..           |...+.+++|+ |||++|++++++.|++|++..+   . ...+..+.. .+
T Consensus       266 ~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~  340 (1045)
T 1k32_A          266 SIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT---Y-VLKVPEPLRIRY  340 (1045)
T ss_dssp             EEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS---B-EEECSCCSCEEE
T ss_pred             EEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC---c-eEEccCCCcceE
Confidence            9999999554433 5544           23368899999 9999999988999999999875   2 233555666 89


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEE-EEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          667 HSCVFHPTFPSLLVIGCYETLE-LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       667 ~sl~fspdg~~L~sgs~dg~I~-IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ..++|+ +++.|++++.+..|+ +||+.+++...+..|...+..++|+||+++|++++.|+.|++||
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d  406 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD  406 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence            999999 999999999888899 99999988776668888999999999999999999999999996

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=1.4e-20  Score=201.72  Aligned_cols=260  Identities=11%  Similarity=0.101  Sum_probs=182.5

Q ss_pred             CCcEEEEEc--CCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeC---CCeEEEEecCCCCc-eeEEeecCCcceEEEEE
Q 004737          471 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF  543 (732)
Q Consensus       471 Dg~I~VWd~--~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~---Dg~I~IWDl~s~~~-~~~~l~~h~~~V~sl~f  543 (732)
                      ++.|.+|++  ++++... ....+...+..++|+||++ |++++.   ++.|.+||+.++.. .+..+..+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            456777655  4566543 3334556788999999999 555544   68999999976543 23344557778999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCC-Ce--eeeEEecc----------CCeeEEEEeCCCCEEEEEEcCCeEEEEECC-CC
Q 004737          544 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVE-TQ  609 (732)
Q Consensus       544 spdg~~llaSgs~Dg~I~iWDl~t-~~--~i~~~~~~----------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~-t~  609 (732)
                      +|+++.+++++..++.|.+||+.. +.  .+..+...          ..+.+++|+|+++.+++...++.|.+||+. ++
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence            999887776666889999999963 32  23333221          137789999999944444457899999998 45


Q ss_pred             eEE--EEEcC-CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC-CceeEEEeecCC------CceEEEEEeCCCCE
Q 004737          610 VCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTG------NKFHSCVFHPTFPS  677 (732)
Q Consensus       610 ~~i--~~l~~-h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~-~~~~i~~~~~~~------~~I~sl~fspdg~~  677 (732)
                      +..  ..+.. ....+..++|+|||++|++++  ++.|.+|++.... ....+..+....      ..+..++|+|+|++
T Consensus       174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~  253 (347)
T 3hfq_A          174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF  253 (347)
T ss_dssp             CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred             cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence            432  22222 234678999999999777765  7899999987521 112233333222      45889999999998


Q ss_pred             EEEEE-cCCeEEEEECCCC---eEE-EEccCCCCeeEEEEeCCCCEEEEEECC-CeEEEe
Q 004737          678 LLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW  731 (732)
Q Consensus       678 L~sgs-~dg~I~IwDl~t~---~~~-~~~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW  731 (732)
                      |+++. .++.|.+|++...   +.+ .+..+...+.+++|+||+++|++++.+ +.|.||
T Consensus       254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            86554 5789999999732   333 444566778999999999998888765 899999

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=9.2e-22  Score=232.05  Aligned_cols=292  Identities=12%  Similarity=0.079  Sum_probs=207.7

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCC---CeEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCeEEEEec---
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLE---  489 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~---~V~~lafSpdg~~Lasgs~D---------g~I~VWd~~t~~~~~~l~---  489 (732)
                      .|..+++|+..++..   ...+.+|..   .|.+++|||||++|++++.+         +.|++||+.+++. ..+.   
T Consensus        35 ~dg~i~~~d~~~g~~---~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~  110 (723)
T 1xfd_A           35 QKGTVRLWNVETNTS---TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE  110 (723)
T ss_dssp             SSSCEEEBCGGGCCC---EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT
T ss_pred             CCCCEEEEECCCCcE---EEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc
Confidence            345788999888754   344566665   49999999999999999874         7888999998876 3333   


Q ss_pred             cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce------------------EEEEEcCCCCcEE
Q 004737          490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV------------------MSLDFHPSKEDLL  551 (732)
Q Consensus       490 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V------------------~sl~fspdg~~ll  551 (732)
                      .|...+.+++|+|||++||+++. +.|++||+.++.. ......+...+                  .+++|+|||+.++
T Consensus       111 ~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la  188 (723)
T 1xfd_A          111 VSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (723)
T ss_dssp             CCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             cccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence            44556899999999999999986 7999999998664 44444333333                  7899999987777


Q ss_pred             EEEeCC---------------------------------CcEEEEECCCCeeeeEEec-------cCCeeEEEEeCCCCE
Q 004737          552 CSCDNN---------------------------------SEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGR  591 (732)
Q Consensus       552 aSgs~D---------------------------------g~I~iWDl~t~~~i~~~~~-------~~~i~~v~~sp~g~~  591 (732)
                      ++...+                                 ..|++||+.++++...+..       ...+..++|+|+++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~  268 (723)
T 1xfd_A          189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV  268 (723)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred             EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence            554322                                 2799999998876555543       234788999999988


Q ss_pred             EEEEEcC----CeEEEEECCCCeEEEEEcC-CCCCEE----EEEEeCCCCEEEEE-e--CC------eEEEEEC-CCCCC
Q 004737          592 ILAAAIE----NYISILDVETQVCRLKLQG-HKNQVH----SVCWNTSGEYLASV-S--DE------LVRVWSI-GSGSK  652 (732)
Q Consensus       592 ll~~s~d----g~I~IwDl~t~~~i~~l~~-h~~~V~----sla~spdg~~Lasg-s--Dg------~I~IWDl-~t~~~  652 (732)
                      +++....    ..|++||+.++++...+.. +...+.    .++|+|||+.|+.. +  ++      .|.+||+ ..+. 
T Consensus       269 l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~-  347 (723)
T 1xfd_A          269 AVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSS-  347 (723)
T ss_dssp             EEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSS-
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCC-
Confidence            7666543    5799999999887665543 334443    78999999977654 3  66      4667773 3332 


Q ss_pred             ceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEECCCC---eEEEEcc---CCCCeeEEEEeCCCCEEEEE
Q 004737          653 GECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA---HDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~d---g~I~IwDl~t~---~~~~~~~---h~~~V~sla~spdg~~LaSg  722 (732)
                      ..+...+......+.. ++|+|+++.|++.+.+   +.++||++...   +...+..   |...+..++|+||+++|+..
T Consensus       348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             ccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            0012233333344444 6999999999877766   67889987642   2223333   67779999999999987765


Q ss_pred             E
Q 004737          723 S  723 (732)
Q Consensus       723 s  723 (732)
                      .
T Consensus       428 ~  428 (723)
T 1xfd_A          428 C  428 (723)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.89  E-value=5e-20  Score=198.64  Aligned_cols=284  Identities=11%  Similarity=0.049  Sum_probs=200.9

Q ss_pred             CCceeeeeecCC-CceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC----CcEEEEEcCC--CeE--EEEeccCCCce
Q 004737          425 RDRVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWI  495 (732)
Q Consensus       425 ~d~~~r~wd~~~-g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D----g~I~VWd~~t--~~~--~~~l~~h~~~V  495 (732)
                      .+..+.+|.++. ...+..+..+  |...+..++|+|||++|++++.+    +.|.+|++..  ++.  +..+..+....
T Consensus        25 ~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p  102 (361)
T 3scy_A           25 NSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADP  102 (361)
T ss_dssp             SCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCE
T ss_pred             CCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCc
Confidence            345566666532 2233444444  77788899999999999999886    7999998865  443  33444456677


Q ss_pred             EEEEEcCCCCeEEEEe-CCCeEEEEecCCCCcee--EEe---ec--------CCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737          496 TDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSL--RTF---TG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       496 ~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~--~~l---~~--------h~~~V~sl~fspdg~~llaSgs~Dg~I~  561 (732)
                      ..+++  ++++|++++ .++.|.+|++.......  ...   .+        +...+.+++|+|+++.+++++..++.|+
T Consensus       103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~  180 (361)
T 3scy_A          103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH  180 (361)
T ss_dssp             EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence            88888  788877776 57899999997543211  111   11        1234588999999988887777789999


Q ss_pred             EEECCCCee--------------eeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE--EEEEc---CCCCC
Q 004737          562 YWSINNGSC--------------AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQ  621 (732)
Q Consensus       562 iWDl~t~~~--------------i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~--i~~l~---~h~~~  621 (732)
                      +|++.....              .........+..++|+|+++++++++ .++.|.+||+.++..  +..+.   .+...
T Consensus       181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~  260 (361)
T 3scy_A          181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG  260 (361)
T ss_dssp             EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC
T ss_pred             EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC
Confidence            999875431              11222345688999999999988888 589999999987754  23332   23456


Q ss_pred             EEEEEEeCCCCEEEEEe-C--CeEEEEECCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCC
Q 004737          622 VHSVCWNTSGEYLASVS-D--ELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTE  694 (732)
Q Consensus       622 V~sla~spdg~~Lasgs-D--g~I~IWDl~t~-~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~Iw--Dl~t  694 (732)
                      +.+++|+|||++|+++. +  +.|.+|++... .....+..+.. ...+..++|+|++++|++++ .++.|.+|  |..+
T Consensus       261 ~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~  339 (361)
T 3scy_A          261 SGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT  339 (361)
T ss_dssp             EEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred             cccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence            78999999999987766 5  68999999621 22234555554 56788999999999999988 45788885  5567


Q ss_pred             CeEEEEc--cCCCCeeEEEEe
Q 004737          695 NKTLTLS--AHDKLVSSLAAS  713 (732)
Q Consensus       695 ~~~~~~~--~h~~~V~sla~s  713 (732)
                      +++....  .+...+.|+.|.
T Consensus       340 g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          340 GLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             CCEEECSCCEECSSEEEEEEE
T ss_pred             CcEeecceeeeCCCCeEEEEc
Confidence            7776443  345678999886

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.89  E-value=4.5e-21  Score=203.92  Aligned_cols=270  Identities=9%  Similarity=0.039  Sum_probs=194.1

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEee
Q 004737          455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      .++++++++++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. ...+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence            45788889999999999999999999999988886543 2578999999998665 445689999999988653 33333


Q ss_pred             -cC-----CcceEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCe---eeeEEeccCCeeEEEEeCCCCEE
Q 004737          533 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       533 -~h-----~~~V~sl~fspdg~~llaSgs~-----------Dg~I~iWDl~t~~---~i~~~~~~~~i~~v~~sp~g~~l  592 (732)
                       .+     ...+.+++|+|+++.++++...           ++.|.+||+.+++   .+..+.....+.+++|+|++. +
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence             22     2347899999998777655533           4899999998844   344555566788999999998 6


Q ss_pred             EEEEcCCeEEEEECCCCeEEEEEcCCCC------------------------CEEEEEEeCCCCEEEEEe--CCeEEEEE
Q 004737          593 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS  646 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t~~~i~~l~~h~~------------------------~V~sla~spdg~~Lasgs--Dg~I~IWD  646 (732)
                      +++  ++.|.+||+.+++.+..+..+..                        ...++++++++.......  ...+..+|
T Consensus       162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            664  44599999999988877654320                        344567766542211111  11222345


Q ss_pred             CCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737          647 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       647 l~t~~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                      ..++.  .....+......+..++|+| ++++++++  ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus       240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  315 (349)
T 1jmx_B          240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF  315 (349)
T ss_dssp             TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred             ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence            54432  11222233566788999999 99988888  889999999999987544455568899999999988888889


Q ss_pred             CeEEEeC
Q 004737          726 KCVKIWK  732 (732)
Q Consensus       726 G~I~IWD  732 (732)
                      +.|++||
T Consensus       316 ~~v~v~d  322 (349)
T 1jmx_B          316 NDLAVFN  322 (349)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEe
Confidence            9999997

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.88  E-value=4.3e-21  Score=208.27  Aligned_cols=287  Identities=11%  Similarity=0.072  Sum_probs=208.4

Q ss_pred             EEEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC
Q 004737          442 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  513 (732)
Q Consensus       442 ~v~~l~~H~~~V~~-----lafSpdg~~Lasgs~-Dg--~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D  513 (732)
                      ++..+..|...+..     .+|+|||++|+.++. ++  .|.+||+.+++......++...+..++|+||++.|++++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34556677766666     899999999999887 66  48889999998887777777666678899999999999999


Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEE--EcCCCCcEEEEE---------------------eCCCcEEEEECCCCee
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC  570 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~--fspdg~~llaSg---------------------s~Dg~I~iWDl~t~~~  570 (732)
                      +.|++||+.+++. ...+..+...+....  +++++..+++..                     ..+..|++||+.+++.
T Consensus       102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            9999999998763 444555555554444  478876555321                     2346899999999987


Q ss_pred             eeEEeccCCeeEEEEeC-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCC--CCEEEEEEeCCCCEEEEEe--C
Q 004737          571 AGVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--D  639 (732)
Q Consensus       571 i~~~~~~~~i~~v~~sp-~g~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~--~~V~sla~spdg~~Lasgs--D  639 (732)
                      .........+..+.|+| +++.|+.+..+      ..|.++|+..+... .+..+.  ..+..++|+|||+.|+..+  +
T Consensus       181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence            77766667789999999 99888887763      37888898766443 333333  3578899999999776544  3


Q ss_pred             C----eEEEEECCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCeEEEEccC
Q 004737          640 E----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAH  703 (732)
Q Consensus       640 g----~I~IWDl~t~~~~~~i~~~~~~~~~---I~sl~fspdg~~L~sg---------s~dg~I~IwDl~t~~~~~~~~h  703 (732)
                      +    .|++||+.++.. ..+..+..+...   ...+.|+|+|+.|++.         ..+..|++||+.+++...+..|
T Consensus       260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (388)
T 3pe7_A          260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH  338 (388)
T ss_dssp             TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence            3    399999988743 233333221000   1113799999988765         3455899999999988777777


Q ss_pred             CC-----------CeeEEEEeCCCCEEEEEE-CCCeEEEe
Q 004737          704 DK-----------LVSSLAASTVNGMVASAS-HDKCVKIW  731 (732)
Q Consensus       704 ~~-----------~V~sla~spdg~~LaSgs-~DG~I~IW  731 (732)
                      ..           .+.+++|+||++.|+.++ .+|...||
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            66           688899999999887666 57777777

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=7.4e-21  Score=200.93  Aligned_cols=261  Identities=12%  Similarity=0.076  Sum_probs=198.7

Q ss_pred             CCceeeeeecCCCceeEEEEEec-CCCC-CeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEecc-C----CCceE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEE-H----TQWIT  496 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~-~H~~-~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~-h----~~~V~  496 (732)
                      .+..+.+|+..++.....   +. ++.. .+.+++|+|||++++ ++..++.|.+||+.+++.+..+.. +    ...+.
T Consensus         9 ~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~   85 (337)
T 1pby_B            9 RPDKLVVIDTEKMAVDKV---ITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF   85 (337)
T ss_dssp             TTTEEEEEETTTTEEEEE---EECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred             CCCeEEEEECCCCcEEEE---EEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence            355678888877754333   33 2222 488999999998765 455678999999999988877653 2    22678


Q ss_pred             EEEEcCCCCeEEEEe------------CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737          497 DVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       497 ~l~fspdg~~Lasgs------------~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD  564 (732)
                      +++|+|++++|++++            .++.|.+||+.+++. ...+.. ...+.+++|+|+++.++++   ++.|++||
T Consensus        86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~~d  160 (337)
T 1pby_B           86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL---GRDLHVMD  160 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEEEE
T ss_pred             ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe---CCeEEEEE
Confidence            899999999999886            579999999987653 444443 4568889999998777655   68899999


Q ss_pred             CCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC------------------------eEEEEECCCCeEE-EEEcCCC
Q 004737          565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------------------------YISILDVETQVCR-LKLQGHK  619 (732)
Q Consensus       565 l~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg------------------------~I~IwDl~t~~~i-~~l~~h~  619 (732)
                      +.+++.+..+........+.|+|++..+++.+..+                        .|.+||+.+++.. ..+..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  240 (337)
T 1pby_B          161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD  240 (337)
T ss_dssp             TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC
Confidence            99999887776544223447888887665554332                        4789999998764 3344566


Q ss_pred             CCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          620 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       620 ~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      ..+.+++|+|++++|+++ ++.|++||+.++   +.+..+.. ...+.+++|+|++++|++++.++.|++||+.+++.+
T Consensus       241 ~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          241 VFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             SCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            788999999999999888 799999999886   55555543 456789999999999999988999999999999877

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.3e-20  Score=222.08  Aligned_cols=258  Identities=14%  Similarity=0.103  Sum_probs=194.9

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-----CeEEEEeccCCCc-------
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW-------  494 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~-------  494 (732)
                      ..+.+|+..++.    ...+..|...|.+++|||||++||++ .|+.|++||+.+     ++.......+...       
T Consensus       101 ~~i~~~d~~~~~----~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  175 (706)
T 2z3z_A          101 GGLVGFDMLARK----VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV  175 (706)
T ss_dssp             TEEEEEETTTTE----EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred             CEEEEEECCCCc----eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence            678899988774    23455677889999999999999985 679999999998     7766554444333       


Q ss_pred             -------eEEEEEcCCCCeEEEEe---------------------------------CCCeEEEEecCCCCceeEEe--e
Q 004737          495 -------ITDVRFSPSLSRLATSS---------------------------------ADRTVRVWDTENPDYSLRTF--T  532 (732)
Q Consensus       495 -------V~~l~fspdg~~Lasgs---------------------------------~Dg~I~IWDl~s~~~~~~~l--~  532 (732)
                             +.+++|+|||++|++++                                 .+..|++||+.++.. ....  .
T Consensus       176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~  254 (706)
T 2z3z_A          176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGE  254 (706)
T ss_dssp             GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCS
T ss_pred             hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCC
Confidence                   48999999999999997                                 446899999987653 2222  2


Q ss_pred             cCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-eeeeEEeccC-----CeeEEEEeC--CCCEEEEEEcCC
Q 004737          533 GHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG-SCAGVFKCQS-----GATQMRFQP--RLGRILAAAIEN  599 (732)
Q Consensus       533 ~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~-~~i~~~~~~~-----~i~~v~~sp--~g~~ll~~s~dg  599 (732)
                      .|...+.+++|+|+++.+++++. ++     .|++||+.++ ..........     .+..++|+|  ++.+++++..++
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEV-NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEE-CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             CCceeEeeEEEECCCCEEEEEEe-CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence            46778999999999876665443 43     8999999998 4433332211     236789999  988888888889


Q ss_pred             eEEEEECC-CCeEEEEEcCCCCCEEE-EEEeCCCCEEEEEe--CC----eEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737          600 YISILDVE-TQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVF  671 (732)
Q Consensus       600 ~I~IwDl~-t~~~i~~l~~h~~~V~s-la~spdg~~Lasgs--Dg----~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f  671 (732)
                      .+.||++. ++..+..+..+...+.+ ++|+|+++.|+.++  ++    .|..||+.++.    ...+. +...+..++|
T Consensus       334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~  408 (706)
T 2z3z_A          334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQL  408 (706)
T ss_dssp             SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEE
T ss_pred             ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEE
Confidence            88888876 56777778778888877 79999999887665  44    67777776653    22232 4567899999


Q ss_pred             eCCCCEEEEEEcC----CeEEEEECCCCe
Q 004737          672 HPTFPSLLVIGCY----ETLELWNMTENK  696 (732)
Q Consensus       672 spdg~~L~sgs~d----g~I~IwDl~t~~  696 (732)
                      +|+++++++...+    +.|++||+.+++
T Consensus       409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9999988877554    369999999887

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.3e-19  Score=193.17  Aligned_cols=235  Identities=9%  Similarity=0.086  Sum_probs=190.5

Q ss_pred             CCceEEEEEcCCCCeEEEEeC-------CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 004737          492 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  564 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~-------Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD  564 (732)
                      ...+..++|+|++++|++++.       ++.|.+||..+++. ...+.. ...+..++|+|+++.+++++..++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            356889999999999888874       56899999998763 444443 345789999999988888888889999999


Q ss_pred             CCCCeeeeEEeccC----------CeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCC
Q 004737          565 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE  632 (732)
Q Consensus       565 l~t~~~i~~~~~~~----------~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~  632 (732)
                      +.+++.+..+....          .+..++|+|+++++++++.  ++.|.+||+.+++.+..+..+...+.+++|+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            99999888877543          1678999999998888873  78899999999999888876666788999999999


Q ss_pred             EEEEEe-CCeEEEEECCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCC
Q 004737          633 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL  706 (732)
Q Consensus       633 ~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~  706 (732)
                      +|++++ ++.|.+||+.++   +.+..+..    +...+..++|+|+++++++++.+ +.|++||+.+++.+....... 
T Consensus       198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-  273 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-  273 (353)
T ss_dssp             EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred             EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence            999888 899999999887   55555443    45568889999999988888765 799999999998873332222 


Q ss_pred             eeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737          707 VSSLAASTVNGMVASAS-HDKCVKIWK  732 (732)
Q Consensus       707 V~sla~spdg~~LaSgs-~DG~I~IWD  732 (732)
                      ..+++|+|++++|+.++ .++.|.+||
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEE
Confidence            26799999999766665 689999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=3.1e-20  Score=207.39  Aligned_cols=240  Identities=10%  Similarity=0.090  Sum_probs=178.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC-----------eEE-----EEeccCCCceEEEEEcCCCCeEE----E
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T  509 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~~-----~~l~~h~~~V~~l~fspdg~~La----s  509 (732)
                      ...++++++++++.++++++.|+ |+||+....           ...     ..+ .+...|++++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            44689999999999999999887 888875311           111     112 3567899999999999999    7


Q ss_pred             EeCCCeEEEEecCCC-----Cc-----eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccC
Q 004737          510 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS  578 (732)
Q Consensus       510 gs~Dg~I~IWDl~s~-----~~-----~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~  578 (732)
                      ++.|++|+|||+.+.     ..     .+..+.+|...|.+++|+|++..+|++++.||.|++||++++..+.... +..
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            888999999998753     11     2456678999999999999877888899999999999999887664443 456


Q ss_pred             CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-------CCCEEEEEEeCCCCEEEEEe--CC------eEE
Q 004737          579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-------KNQVHSVCWNTSGEYLASVS--DE------LVR  643 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-------~~~V~sla~spdg~~Lasgs--Dg------~I~  643 (732)
                      .+.+++|+|++.+|++++.||.|++||++ ++....+..|       ...|.+++|++++.++++.+  ||      .++
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence            79999999999999999999999999998 5555555443       23799999999988887655  53      399


Q ss_pred             EEECCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC
Q 004737          644 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM  692 (732)
Q Consensus       644 IWDl~t~~~--~~~i~~~~-------~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl  692 (732)
                      +|+++....  ...+..+.       ....+...+.+.++.+++++++... .|.|+..
T Consensus       273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence            999986532  12222221       1223334445557878777776644 4555554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=2.6e-19  Score=193.04  Aligned_cols=268  Identities=9%  Similarity=0.078  Sum_probs=188.5

Q ss_pred             CCCEEEEEEC----CCcEEEEEc--CCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC----CeEEEEecCCC--Cc-e
Q 004737          461 DGKLLATGGH----DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-S  527 (732)
Q Consensus       461 dg~~Lasgs~----Dg~I~VWd~--~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~I~IWDl~s~--~~-~  527 (732)
                      ...++++|+.    ++.|.+|++  ++++.......+...+..++|+||+++|++++.+    +.|.+|+++..  .. .
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            3445666643    568888866  4565443322267778899999999999999886    79999998764  21 1


Q ss_pred             eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee----EEec-----------cCCeeEEEEeCCCCEE
Q 004737          528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKC-----------QSGATQMRFQPRLGRI  592 (732)
Q Consensus       528 ~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~----~~~~-----------~~~i~~v~~sp~g~~l  592 (732)
                      +.....+...+..+++  +++.++++...++.|.+|++.....+.    .+..           ...+.+++|+|+++++
T Consensus        92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence            2233335566778888  667777676678999999997543322    1111           1224779999999988


Q ss_pred             EEEEc-CCeEEEEECCCCe-------E------EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeE
Q 004737          593 LAAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI  656 (732)
Q Consensus       593 l~~s~-dg~I~IwDl~t~~-------~------i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i  656 (732)
                      ++++. ++.|.+|++....       .      ......+...+..++|+|+|+++++++  ++.|.+||+.++.. ..+
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~  248 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEI  248 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEe
Confidence            77775 7899999887533       1      122223456788999999999887776  78999999986522 223


Q ss_pred             EEee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCeEE--EEccCCCCeeEEEEeCCCCEEEEEE-CCC
Q 004737          657 HELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL--TLSAHDKLVSSLAASTVNGMVASAS-HDK  726 (732)
Q Consensus       657 ~~~~---~~~~~I~sl~fspdg~~L~sgs~d--g~I~IwDl~--t~~~~--~~~~h~~~V~sla~spdg~~LaSgs-~DG  726 (732)
                      ..+.   .+......++|+|++++|+++..+  +.|.+|++.  +++..  ........+.+++|+|++++|++++ .++
T Consensus       249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTT
T ss_pred             EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCC
Confidence            3332   233456899999999999887765  789999985  45533  2222256788999999999988888 678


Q ss_pred             eEEEe
Q 004737          727 CVKIW  731 (732)
Q Consensus       727 ~I~IW  731 (732)
                      .|.||
T Consensus       329 ~v~v~  333 (361)
T 3scy_A          329 VIQIF  333 (361)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99996

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=7.9e-21  Score=224.44  Aligned_cols=271  Identities=11%  Similarity=0.058  Sum_probs=199.1

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCC---ceEEEEEcCCCCeEEEEeC---------CCeEEEEecC
Q 004737          455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE  522 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~V~~l~fspdg~~Lasgs~---------Dg~I~IWDl~  522 (732)
                      +++|+|||+++++ +.|+.|++||+.+++....+..|..   .|.+++|+|||++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6899999965555 4699999999999998877766544   4899999999999999876         7899999998


Q ss_pred             CCCcee-EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-------------------CCeeE
Q 004737          523 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQ  582 (732)
Q Consensus       523 s~~~~~-~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-------------------~~i~~  582 (732)
                      +++... ..+   ...+..++|+|||+.++++ . ++.|++||+.++++.......                   .....
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            765300 222   2568999999999877654 3 789999999888765433211                   11248


Q ss_pred             EEEeCCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE---E-----EEcCCCC
Q 004737          583 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN  620 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg----------------------------------~I~IwDl~t~~~i---~-----~l~~h~~  620 (732)
                      ++|+|+|++|++++.|.                                  .|++||+.+++.+   .     .+.+|..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            99999999999988652                                  7889999987642   1     1335778


Q ss_pred             CEEEEEEeCCCCEEEEEe-CC----eEEEEE----CCCCCCceeEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 004737          621 QVHSVCWNTSGEYLASVS-DE----LVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC  683 (732)
Q Consensus       621 ~V~sla~spdg~~Lasgs-Dg----~I~IWD----l~t~~~~~~i~-~~~~~~~~I~-----sl~fspdg~~L~sg--s~  683 (732)
                      .+.+++|+||++++++.. .+    .|.+||    +.++....... ....+...+.     .+.|+|+|+.|+..  ..
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            899999999988777754 22    588899    76653222221 0124555555     78999999976653  34


Q ss_pred             CC--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECC-----CeEEEeC
Q 004737          684 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK  732 (732)
Q Consensus       684 dg--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~D-----G~I~IWD  732 (732)
                      ++  .|++||+.+++...+..+...|..+.++ +++.|+..+.+     +.++||+
T Consensus       334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence            44  7888899888766776777778888888 88877777665     7788884

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=9.7e-19  Score=189.82  Aligned_cols=267  Identities=11%  Similarity=0.059  Sum_probs=186.3

Q ss_pred             EEEEEECC--CcEEEEEc--CCCeEEEE--ec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC-CCCceeEEeec-C
Q 004737          464 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H  534 (732)
Q Consensus       464 ~Lasgs~D--g~I~VWd~--~t~~~~~~--l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~-s~~~~~~~l~~-h  534 (732)
                      +|++|+..  +.|.+|++  ++++....  .. .....+..++|+||+++|++++.+ .|.+||+. +++. ...... .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence            45566653  46777664  56654322  21 234468899999999999999888 99999997 5543 222211 1


Q ss_pred             CcceEEEEEcCCCCc-EEEEEe-------------CCCcEEEEECC-CCeeeeEEe-----ccCCeeEEEEeCCCCEEEE
Q 004737          535 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA  594 (732)
Q Consensus       535 ~~~V~sl~fspdg~~-llaSgs-------------~Dg~I~iWDl~-t~~~i~~~~-----~~~~i~~v~~sp~g~~ll~  594 (732)
                      .+.+.+++|+|+++. ++++++             .++.+.+|++. .++....+.     ....+.+++|+|+++++++
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            123567899999875 344553             68999999997 466554443     2356899999999998887


Q ss_pred             EEc-CCeEEEEECC-CCeEE--EEEc--CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCC--CCCceeEEEee---c
Q 004737          595 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELS---C  661 (732)
Q Consensus       595 ~s~-dg~I~IwDl~-t~~~i--~~l~--~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t--~~~~~~i~~~~---~  661 (732)
                      +.. ++.|++||+. +++..  ..+.  .|...+..++|+|+|++|++++  ++.|.+|++..  +........+.   .
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            765 6799999998 67543  3333  2456799999999999988877  67999998763  32110011221   1


Q ss_pred             C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCeEEE----EccCCCCeeEEEEeC---CC
Q 004737          662 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN  716 (732)
Q Consensus       662 ~----~~------~I~sl~-fspdg~~L~sgs~dg------~I~IwDl~-t~~~~~----~~~h~~~V~sla~sp---dg  716 (732)
                      .    ..      .+..++ |+|+|++|+++..+.      .|.+|++. +++...    ...+...+..++|+|   |+
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence            1    11      578899 999999988776533      89999996 566542    223556678899999   89


Q ss_pred             CEEEEEECC-CeEEEeC
Q 004737          717 GMVASASHD-KCVKIWK  732 (732)
Q Consensus       717 ~~LaSgs~D-G~I~IWD  732 (732)
                      ++|++++.+ +.|.||+
T Consensus       322 ~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TEEEEECSSSCEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEE
Confidence            999998864 8999995

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=9e-20  Score=197.60  Aligned_cols=272  Identities=13%  Similarity=0.041  Sum_probs=192.3

Q ss_pred             CeEEEEEcCCCCEEEEEECC---CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          452 KVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      .+.+++|+|||++|+.+..+   ..|.+||+.+++.......+...+..+.|+||+++|++++.++.|++||+.++.. .
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~  115 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-Q  115 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-E
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-E
Confidence            37889999999998877643   4788899998876554443333334488999999999999999999999987653 3


Q ss_pred             EEeecCCcceEE-------------------EEEcCCCCcEEEEE----eCCCcEEEEECCCCeeeeEEeccCCeeEEEE
Q 004737          529 RTFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRF  585 (732)
Q Consensus       529 ~~l~~h~~~V~s-------------------l~fspdg~~llaSg----s~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~  585 (732)
                      ..+..+......                   +.|+|+++.+++..    ..+..|++||+.+++..........+..+.|
T Consensus       116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~  195 (396)
T 3c5m_A          116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY  195 (396)
T ss_dssp             EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred             EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence            333333332222                   34567766554332    4567899999999887777766677899999


Q ss_pred             eC-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCC
Q 004737          586 QP-RLGRILAAAIE------NYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG  650 (732)
Q Consensus       586 sp-~g~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h--~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~  650 (732)
                      +| ++..|+.++.+      ..|.+||+..++... +..+  ...+..++|+|+|++|+..+ +     +.|++||+.++
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            99 77777776653      368999987665333 3223  23578899999999777665 3     34999999876


Q ss_pred             CCceeEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCeEEEEccCCC--------
Q 004737          651 SKGECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK--------  705 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs----------------~dg~I~IwDl~t~~~~~~~~h~~--------  705 (732)
                      .. ..+....    ... +.|+| +++++++++                .+..|++||+.+++...+..+..        
T Consensus       275 ~~-~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~  348 (396)
T 3c5m_A          275 EN-EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD  348 (396)
T ss_dssp             CE-EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred             Ce-EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence            32 2222221    133 89999 999887755                23689999999887666655554        


Q ss_pred             ---CeeEEEEeCCCCEEEEEEC-CCeEEEe
Q 004737          706 ---LVSSLAASTVNGMVASASH-DKCVKIW  731 (732)
Q Consensus       706 ---~V~sla~spdg~~LaSgs~-DG~I~IW  731 (732)
                         .+..++|+|+++.|+.++. ++...||
T Consensus       349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             SSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             ccCCCCCceEccCCCeEEEEecCCCCceEE
Confidence               2667899999998887764 5666665

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=1.4e-19  Score=213.86  Aligned_cols=297  Identities=11%  Similarity=0.032  Sum_probs=202.6

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCC---CeEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCeEEEEeccCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQ  493 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~---~V~~lafSpdg~~Lasgs~---------Dg~I~VWd~~t~~~~~~l~~h~~  493 (732)
                      +..+++|+..++..   ...+.+|..   .|.+++|||||++||+++.         ++.|++||+.+++.+... ....
T Consensus        35 d~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~  110 (719)
T 1z68_A           35 DNNIVLYNIETGQS---YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPR  110 (719)
T ss_dssp             TSCEEEEESSSCCE---EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCS
T ss_pred             CCCEEEEEcCCCcE---EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCc
Confidence            45788899888753   333444433   4899999999999998876         789999999998763111 1135


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce-----------------EEEEEcCCCCcEEEEEeC
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDN  556 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V-----------------~sl~fspdg~~llaSgs~  556 (732)
                      .+.+++|+|||+.||++. |+.|++||+.++.....+..++...|                 .+++|+|||+.++++...
T Consensus       111 ~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          111 PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            688999999999999986 78999999987664222223333222                 489999998777655443


Q ss_pred             CC---------------------------------cEEEEECCCCeee--eEEe-------ccCCeeEEEEeCCCCEEEE
Q 004737          557 NS---------------------------------EIRYWSINNGSCA--GVFK-------CQSGATQMRFQPRLGRILA  594 (732)
Q Consensus       557 Dg---------------------------------~I~iWDl~t~~~i--~~~~-------~~~~i~~v~~sp~g~~ll~  594 (732)
                      ++                                 .|++||+.+++..  ..+.       +...+..++|+|++..+++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~  269 (719)
T 1z68_A          190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQ  269 (719)
T ss_dssp             CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEE
T ss_pred             CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEE
Confidence            22                                 7889999987653  1111       2234789999999655555


Q ss_pred             EEcC----CeEEEEE----CCCCeEEEEE----cCCCCCEE-----EEEEeCCCCEEEE--Ee-CC--eEEEEECCCCCC
Q 004737          595 AAIE----NYISILD----VETQVCRLKL----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSK  652 (732)
Q Consensus       595 ~s~d----g~I~IwD----l~t~~~i~~l----~~h~~~V~-----sla~spdg~~Las--gs-Dg--~I~IWDl~t~~~  652 (732)
                      ....    ..|.+||    +.++++...+    ..|...+.     .++|+|||+.|+.  .. ++  .|.+||+.++. 
T Consensus       270 ~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-  348 (719)
T 1z68_A          270 WLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-  348 (719)
T ss_dssp             EEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-
T ss_pred             EeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-
Confidence            4332    2488999    8877665444    35777776     8899999986554  33 55  67778876653 


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECC--CC--eEEEEc----cCCCCeeEEEEeCCCCEE
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNGMV  719 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~--t~--~~~~~~----~h~~~V~sla~spdg~~L  719 (732)
                         ...+..+...+..+.++ ++..|++.+.+     +.+++|.+.  ++  +...+.    +|...+..+.|++++++|
T Consensus       349 ---~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l  424 (719)
T 1z68_A          349 ---AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYY  424 (719)
T ss_dssp             ---CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSE
T ss_pred             ---eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEE
Confidence               33444455667777777 88888888776     677777664  34  223332    266778899999999876


Q ss_pred             EE-EECC--CeEEEeC
Q 004737          720 AS-ASHD--KCVKIWK  732 (732)
Q Consensus       720 aS-gs~D--G~I~IWD  732 (732)
                      +. ++.+  ..+.+||
T Consensus       425 ~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          425 ALVCYGPGIPISTLHD  440 (719)
T ss_dssp             EEEECCBSSCEEEEEC
T ss_pred             EEEcCCCCCCeEEEEE
Confidence            64 4333  3566664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=3.5e-18  Score=181.50  Aligned_cols=260  Identities=10%  Similarity=0.061  Sum_probs=181.5

Q ss_pred             CceeeeeecCCCceeEEEEEecCCC-CCeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEeccCC------CceEE
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHT------QWITD  497 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~-~~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~------~~V~~  497 (732)
                      +..+.+|+..++....   .+..+. ..+.+++|+|||++++ ++..++.|.+||+.+++.+..+..+.      ..+.+
T Consensus        20 ~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~   96 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYS   96 (349)
T ss_dssp             TTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSC
T ss_pred             CCeEEEEECCCCcEEE---EEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccc
Confidence            5667888887775433   333332 2578999999999765 44568999999999999887775332      33789


Q ss_pred             EEEcCCCCeEEEEeCC------------CeEEEEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004737          498 VRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  563 (732)
Q Consensus       498 l~fspdg~~Lasgs~D------------g~I~IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iW  563 (732)
                      ++|+||+++|++++.+            +.|.+||+.++..  .+..+. +...+.+++|+|+++ +++ ++  +.|++|
T Consensus        97 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~  171 (349)
T 1jmx_B           97 FAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYV-AG--PDIYKM  171 (349)
T ss_dssp             EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEE-ES--SSEEEE
T ss_pred             eEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEE-cc--CcEEEE
Confidence            9999999999998865            8999999987432  123333 344689999999987 554 43  349999


Q ss_pred             ECCCCeeeeEEeccC-------------------------CeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE-EEEEc
Q 004737          564 SINNGSCAGVFKCQS-------------------------GATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ  616 (732)
Q Consensus       564 Dl~t~~~i~~~~~~~-------------------------~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~-i~~l~  616 (732)
                      |+.+++.+..+....                         ....+++++++....... ....+..+|..+++. ...+.
T Consensus       172 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (349)
T 1jmx_B          172 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA  251 (349)
T ss_dssp             CTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE
T ss_pred             eCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc
Confidence            999998887765432                         223355554432111000 111222355555432 12233


Q ss_pred             CCCCCEEEEEEeC-CCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          617 GHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       617 ~h~~~V~sla~sp-dg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      .+...+.+++|+| ++++++++ ++.|.+||+.++   +.+..+.. ...+.+++|+|++++|++++.++.|++||+.++
T Consensus       252 ~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          252 DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            3566889999999 99999988 889999999887   55555543 345778999999999999888899999999999


Q ss_pred             eEE
Q 004737          696 KTL  698 (732)
Q Consensus       696 ~~~  698 (732)
                      +.+
T Consensus       327 ~~~  329 (349)
T 1jmx_B          327 EKV  329 (349)
T ss_dssp             EEE
T ss_pred             cee
Confidence            877

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=7.6e-18  Score=182.76  Aligned_cols=246  Identities=12%  Similarity=0.082  Sum_probs=175.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC-CCeEEEEecc-CCCceEEEEEcCCCCe--EEEEe-------------
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPSLSR--LATSS-------------  511 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~-h~~~V~~l~fspdg~~--Lasgs-------------  511 (732)
                      +...+..++|+|||++|++++.+ .|.+|++. +++....... ..+.+.+++|+||+++  ++++.             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            44568899999999999999887 99999997 7776543321 1123567899999994  45553             


Q ss_pred             CCCeEEEEecCCCCceeEEee----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeee--EEec---cCCee
Q 004737          512 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFKC---QSGAT  581 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~~~~~~l~----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-t~~~i~--~~~~---~~~i~  581 (732)
                      .++.+.+|++.........+.    .+...+.+++|+|+|+.++++...++.|++||+. +++...  .+..   ...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            689999999974322222222    2456799999999987766555457899999998 676532  3331   35688


Q ss_pred             EEEEeCCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEcC-------CCC------CEEEEE-EeCCCCEEEEEe--C
Q 004737          582 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D  639 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~-dg~I~IwDl~--t~~~i---~~l~~-------h~~------~V~sla-~spdg~~Lasgs--D  639 (732)
                      .++|+|++++++++.. ++.|.+|++.  +++..   ..+..       |..      .+..++ |+|||++|+++.  +
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            9999999999988876 6899999765  45542   12221       122      588999 999999888765  3


Q ss_pred             C-----eEEEEECC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCe
Q 004737          640 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK  696 (732)
Q Consensus       640 g-----~I~IWDl~-t~~~~~~i~-~~~~~~~~I~sl~fsp---dg~~L~sgs~d-g~I~IwDl~t~~  696 (732)
                      +     .|.+|++. ++.. ..+. ....+......++|+|   ++++|++++.+ +.|.+|++....
T Consensus       277 ~~~~~~~i~v~~~~~~g~~-~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSI-EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSCE-EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCCCCeEEEEEECCCCCE-EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            3     89999996 3321 2111 2333444566789999   89999999875 799999987663

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=5.3e-19  Score=203.80  Aligned_cols=229  Identities=10%  Similarity=0.063  Sum_probs=177.0

Q ss_pred             CCceEEEEEcCCCCeEEEEeC-CCeEEEEecCCCCceeEEeecCC-cceEEEEEcCCCCcEEEEEeC---CCcEEEEECC
Q 004737          492 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN  566 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~h~-~~V~sl~fspdg~~llaSgs~---Dg~I~iWDl~  566 (732)
                      ..+|++++|+|||++||+++. ||+++||+++.+.  .+.+..|. ..+..+.|+|+  .++++++.   +....+|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence            457999999999999999887 9999999996543  44555555 68999999998  57767664   4445555443


Q ss_pred             C---CeeeeEEeccCCeeEEEEeCCCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C--
Q 004737          567 N---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D--  639 (732)
Q Consensus       567 t---~~~i~~~~~~~~i~~v~~sp~g~~-ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D--  639 (732)
                      .   +... .+.........+|+|+++. +++...++.+.+||+.+++.......+ .  .+++|+|||++|++++ +  
T Consensus        97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEET
T ss_pred             ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCC
Confidence            2   2222 3333345667789998865 445555666779999998766555433 2  7899999999999776 5  


Q ss_pred             --CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEccCCCCeeEEE----
Q 004737          640 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA----  711 (732)
Q Consensus       640 --g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~~~~~h~~~V~sla----  711 (732)
                        ..|++||+.++..    ..+..+...+..++|+|||++|+++..++  .|++||+.+++...+..|...+..++    
T Consensus       173 ~~~~i~~~d~~~g~~----~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  248 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGL----RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI  248 (582)
T ss_dssp             TEEEEEEEETTTCCC----EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred             CCeEEEEEcCCCCCc----eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence              5899999988632    25566778899999999999999888888  89999999988876667777777777    


Q ss_pred             ----EeCCCCEEEEEECCCeEEEeC
Q 004737          712 ----ASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       712 ----~spdg~~LaSgs~DG~I~IWD  732 (732)
                          |+|||.++++++.||.++||+
T Consensus       249 ~~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          249 TWLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             cceeEcCCCcEEEEEEcCCcEEEEE
Confidence                999999999999999999995

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=3e-18  Score=203.87  Aligned_cols=266  Identities=13%  Similarity=0.073  Sum_probs=192.7

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc-----eEEEEEcCCCCeEEEEeCC---------CeE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV  516 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---------g~I  516 (732)
                      ....++.|+|||++|+++  |+.|++||+.+++....+.+|...     ...+.|+|||++|++++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999999886  899999999999988888777643     2448899999999999876         566


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-cc------------------
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQ------------------  577 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~------------------  577 (732)
                      .+||+.+++  ...+..|...+..++|+|||+.++++ . ++.|++||+.+++...... ..                  
T Consensus        95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-W-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE-E-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            799999865  34567778889999999999877655 3 7899999998877554322 11                  


Q ss_pred             CCeeEEEEeCCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEc
Q 004737          578 SGATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ  616 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s~dg------------------------------------~I~IwDl~t---~~--~i~~l~  616 (732)
                      .....+.|+|||++|+.+..|.                                    .|++||+.+   +.  ....+.
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~  250 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT  250 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence            1123489999999998876321                                    588899998   72  223333


Q ss_pred             ------CCCCCEEEEEEeCCCCEEEEEe--C---CeEEEEECCCCCC------ceeEEEeecCCCceE-----EEEEeCC
Q 004737          617 ------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKFH-----SCVFHPT  674 (732)
Q Consensus       617 ------~h~~~V~sla~spdg~~Lasgs--D---g~I~IWDl~t~~~------~~~i~~~~~~~~~I~-----sl~fspd  674 (732)
                            +|...+..++|+|||++++...  +   ..|++||+.++..      ...+. ...+...+.     ...|+||
T Consensus       251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTT
T ss_pred             CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCC
Confidence                  3777899999999999776654  2   2799999988751      11111 123444433     6789999


Q ss_pred             CCEEE-EEEcC-C--eEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEEC
Q 004737          675 FPSLL-VIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  724 (732)
Q Consensus       675 g~~L~-sgs~d-g--~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~  724 (732)
                      |+.|+ ..+.. |  .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~  382 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN  382 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence            99877 56543 3  799999998887777666666766553 44665555443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.79  E-value=2.1e-17  Score=179.75  Aligned_cols=278  Identities=10%  Similarity=0.095  Sum_probs=203.3

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEEcCCCeEEEEeccC----
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH----  491 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h----  491 (732)
                      |..+.+||..++...   ..+..+..+  .++|+|||++|+++..          ++.|.+||..+++.+.++...    
T Consensus        30 d~~v~v~D~~t~~~~---~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~  104 (361)
T 2oiz_A           30 ESRVHVYDYTNGKFL---GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV  104 (361)
T ss_dssp             GCEEEEEETTTCCEE---EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred             cCeEEEEECCCCeEE---EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence            456777777776543   445555554  8999999999998863          578999999999988887532    


Q ss_pred             --CCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          492 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       492 --~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                        ......++|+|||++|+++..  +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.
T Consensus       105 ~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          105 QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence              345678999999999998874  58999999998653 444 33 22 223466788876777788889999999986


Q ss_pred             C-CeeeeEE------eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC------CC----CCEEEEEE
Q 004737          567 N-GSCAGVF------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCW  627 (732)
Q Consensus       567 t-~~~i~~~------~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~------h~----~~V~sla~  627 (732)
                      . ++.....      ........+.+.+++..++..+.++.|+++|+....  .+..+..      +.    .....++|
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~  261 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL  261 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred             CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence            5 5544221      111222334446777788888889999999997543  2222211      11    11113789


Q ss_pred             eCCCCEEEEEe------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          628 NTSGEYLASVS------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       628 spdg~~Lasgs------------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +|++..++++.            ++.|.+||+.+.   +.+..+..+.  ...++|+|++++|++++. +.|.+||..++
T Consensus       262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             ecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            99988777653            237999999987   7788877666  999999999999888876 99999999999


Q ss_pred             --eEEEE-ccCCCCeeEEEEeCCCC
Q 004737          696 --KTLTL-SAHDKLVSSLAASTVNG  717 (732)
Q Consensus       696 --~~~~~-~~h~~~V~sla~spdg~  717 (732)
                        +.+.. ..+......++++|+|+
T Consensus       336 ~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cceeeEEeccCCCCcEEEEecCCCC
Confidence              88844 57888899999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=4.5e-18  Score=189.91  Aligned_cols=212  Identities=14%  Similarity=0.158  Sum_probs=159.5

Q ss_pred             CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC---------ceeE-----EeecCCcc
Q 004737          472 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT  537 (732)
Q Consensus       472 g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~---------~~~~-----~l~~h~~~  537 (732)
                      +.|++|+... .      .....+..+++++++.++++++.|+ |+||+.....         ....     ....+...
T Consensus        23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            4678876431 1      2344689999999999999999887 8998754210         0011     11235678


Q ss_pred             eEEEEEcCCCCcEEE---EEeCCCcEEEEECCCC--------eeeeEEe----ccCCeeEEEEeCC-CCEEEEEEcCCeE
Q 004737          538 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI  601 (732)
Q Consensus       538 V~sl~fspdg~~lla---Sgs~Dg~I~iWDl~t~--------~~i~~~~----~~~~i~~v~~sp~-g~~ll~~s~dg~I  601 (732)
                      |.+++|+|++..+++   +++.|+.|++||+.++        +.+..+.    +...|.+++|+|+ +..|++++.||.|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            999999999866665   7888999999998654        2222222    3567999999998 7889999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC-------CCceEEEEEeC
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP  673 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-------~~~I~sl~fsp  673 (732)
                      ++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ +   .....+..+       ...+.+++|++
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG  250 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence            9999999987777778899999999999999999999 9999999998 3   233333322       23789999999


Q ss_pred             CCCEEEEEE-cCC------eEEEEECCCC
Q 004737          674 TFPSLLVIG-CYE------TLELWNMTEN  695 (732)
Q Consensus       674 dg~~L~sgs-~dg------~I~IwDl~t~  695 (732)
                      ++.++++.+ .+|      .+++|++...
T Consensus       251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          251 TYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CceEEEEEccCCCccCCCCceEEEEeccC
Confidence            988775543 332      4999999764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=1.5e-17  Score=194.17  Aligned_cols=281  Identities=10%  Similarity=0.052  Sum_probs=197.8

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEEcCCCeEEEEeccCCCceE---------EEEEc--CCCCe-EEEE
Q 004737          445 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS  510 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasg--s~Dg~I~VWd~~t~~~~~~l~~h~~~V~---------~l~fs--pdg~~-Lasg  510 (732)
                      .+.+|...|..++|++++-++++.  +.++...||....+.....+..|...+.         .+.|+  |||++ |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            356788999999999887667766  5578999999655555667777766666         66676  99998 7766


Q ss_pred             eC-CCeEEEEecC--C-CCceeEEeec-----CCcceEEEEEcCCCCcEEEEEeCC---------CcEEEEECCC-----
Q 004737          511 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN-----  567 (732)
Q Consensus       511 s~-Dg~I~IWDl~--s-~~~~~~~l~~-----h~~~V~sl~fspdg~~llaSgs~D---------g~I~iWDl~t-----  567 (732)
                      +. +..|.+|++.  . +.  ...+..     |...+.+++|+|||+.++++....         ..|++||+.+     
T Consensus        98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            54 5567777765  2 32  344544     667889999999997777555421         5899999988     


Q ss_pred             -CeeeeEE-eccCCeeEEEEeCCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEEcCCCCCEEEEEEeCCCCE
Q 004737          568 -GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY  633 (732)
Q Consensus       568 -~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~-t~---~~i~~l~~h~~~V~sla~spdg~~  633 (732)
                       ++..... .....+..++|+|+|++|++++.+        ..|++||+. ++   +.......|...+..++|+|||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             5554444 334557788999999999988865        379999999 56   444444446788999999999997


Q ss_pred             EEEEe-CC--eEEEEECCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEE
Q 004737          634 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL  700 (732)
Q Consensus       634 Lasgs-Dg--~I~IWDl~t~~~~~~i~~~~~~~~~--------I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~t~~~~~~  700 (732)
                      ++++. ++  .|.+||+.++.   .......+...        +..++|++++.+++++.. +.++||  |+.+++...+
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l  331 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGA---ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA  331 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCC---EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred             EEEECCCCCeEEEEEECCCCc---eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence            77776 77  66667765542   22211211111        457899999998888888 877777  7777777677


Q ss_pred             ccCCCCeeEE-EEeCCCCEEEEEECCCeEEEe
Q 004737          701 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       701 ~~h~~~V~sl-a~spdg~~LaSgs~DG~I~IW  731 (732)
                      ..|...+..+ +++.+.-++++++.+....||
T Consensus       332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            7787788877 554433344455666555555

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1e-16  Score=174.37  Aligned_cols=263  Identities=8%  Similarity=0.057  Sum_probs=189.6

Q ss_pred             CCCEEEEEE------CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC----------CCeEEEEecCCC
Q 004737          461 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP  524 (732)
Q Consensus       461 dg~~Lasgs------~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~----------Dg~I~IWDl~s~  524 (732)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+||++++++++.          +++|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            566666554      3679999999999999888776655  8999999999999863          678999999876


Q ss_pred             CceeEEeec------CCcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-EeccCCeeEEEEeCCC-CEEEEE
Q 004737          525 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA  595 (732)
Q Consensus       525 ~~~~~~l~~------h~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~-~~~~~~i~~v~~sp~g-~~ll~~  595 (732)
                      +. +..+..      +......++|+|+++.++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus        92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred             cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence            63 444432      23456789999999877766554 68999999999988877 5543 33335677765 577888


Q ss_pred             EcCCeEEEEECCC-CeEEEE------EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC----
Q 004737          596 AIENYISILDVET-QVCRLK------LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG----  663 (732)
Q Consensus       596 s~dg~I~IwDl~t-~~~i~~------l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~----  663 (732)
                      +.||.+.+|++.. ++....      +..+..++ .+.+++++..++..+ ++.|.+||+..... ..+..+....    
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK  247 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence            8999999999865 554422      11222222 334467777777666 88999999975432 2222221100    


Q ss_pred             ------CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECC
Q 004737          664 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       664 ------~~I~sl~fspdg~~L~sgs~-----------dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~D  725 (732)
                            .....++|+|++..++++..           .+.|.+||+.+++.+ ++..+.  +.+++|+||+++|++++. 
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-  324 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-  324 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence                  11123689999998888764           348999999999988 555555  999999999999998886 


Q ss_pred             CeEEEeC
Q 004737          726 KCVKIWK  732 (732)
Q Consensus       726 G~I~IWD  732 (732)
                      +.|.|||
T Consensus       325 ~~v~v~D  331 (361)
T 2oiz_A          325 GNVNVYD  331 (361)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            9999997

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=7.2e-17  Score=191.90  Aligned_cols=289  Identities=14%  Similarity=0.068  Sum_probs=195.6

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCC-----eEEEEEcCCCCEEEEEECC---------CcEEEEEcCCCeEEEEeccC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEH  491 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~-----V~~lafSpdg~~Lasgs~D---------g~I~VWd~~t~~~~~~l~~h  491 (732)
                      |..+++|+..++..   ...+.+|...     ...++|||||++|+.++.+         +.+.|||+.+++.. .+..|
T Consensus        35 ~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~  110 (740)
T 4a5s_A           35 ENNILVFNAEYGNS---SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERI  110 (740)
T ss_dssp             TTEEEEEETTTCCE---EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCC
T ss_pred             CCcEEEEECCCCce---EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccC
Confidence            45788899888854   3446666643     2448899999999998876         56679999998865 46677


Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce-----------------EEEEEcCCCCcEEEEE
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSC  554 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V-----------------~sl~fspdg~~llaSg  554 (732)
                      ...+..++|+|||+.||.+. |+.|++||+.++.....+..++...+                 ..+.|+|||+.+++..
T Consensus       111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence            88899999999999999984 78999999987664322333333322                 3589999998777654


Q ss_pred             eCCC-----------------------------------cEEEEECCC---Ce---eeeEEe------ccCCeeEEEEeC
Q 004737          555 DNNS-----------------------------------EIRYWSINN---GS---CAGVFK------CQSGATQMRFQP  587 (732)
Q Consensus       555 s~Dg-----------------------------------~I~iWDl~t---~~---~i~~~~------~~~~i~~v~~sp  587 (732)
                      .+++                                   .|++||+.+   ++   ......      ....+..++|+|
T Consensus       190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp  269 (740)
T 4a5s_A          190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT  269 (740)
T ss_dssp             EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred             EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence            3222                                   588899988   73   322221      223378899999


Q ss_pred             CCCEEEEEEcC----CeEEEEECCCCe----EEE--EE--cCCCCCEE-----EEEEeCCCCEEE-EEe--CC--eEEEE
Q 004737          588 RLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVCWNTSGEYLA-SVS--DE--LVRVW  645 (732)
Q Consensus       588 ~g~~ll~~s~d----g~I~IwDl~t~~----~i~--~l--~~h~~~V~-----sla~spdg~~La-sgs--Dg--~I~IW  645 (732)
                      +++.++.....    ..|.+||+.+++    +..  .+  ..|...|.     .++|+|||+.|+ ..+  +|  .|++|
T Consensus       270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~  349 (740)
T 4a5s_A          270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF  349 (740)
T ss_dssp             TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence            98866665442    379999998876    321  11  34555554     789999999876 665  44  78999


Q ss_pred             ECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEECCCCeEE-EEcc----CCCCeeEEEEe
Q 004737          646 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTENKTL-TLSA----HDKLVSSLAAS  713 (732)
Q Consensus       646 Dl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-------g~I~IwDl~t~~~~-~~~~----h~~~V~sla~s  713 (732)
                      |+.++.   + ..+......+..+.. ++++.|+..+..       ..|+..++..+... .+..    ....+..+.|+
T Consensus       350 ~~~~~~---~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S  424 (740)
T 4a5s_A          350 QIDKKD---C-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFS  424 (740)
T ss_dssp             ETTCSS---C-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEEC
T ss_pred             ECCCCc---e-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEEC
Confidence            987652   2 233333445555442 447666666654       25666676665543 3321    23578899999


Q ss_pred             CCCCEEEEEEC
Q 004737          714 TVNGMVASASH  724 (732)
Q Consensus       714 pdg~~LaSgs~  724 (732)
                      |++++++....
T Consensus       425 ~dg~~~~~~~s  435 (740)
T 4a5s_A          425 KEAKYYQLRCS  435 (740)
T ss_dssp             TTSSEEEEEEC
T ss_pred             CCCCEEEEEeC
Confidence            99997665543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=3.7e-16  Score=167.15  Aligned_cols=240  Identities=15%  Similarity=0.114  Sum_probs=181.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEECC------------------------CcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL  504 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~D------------------------g~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg  504 (732)
                      -+.|.+++++++|+++++...+                        +.|.+||..+++.+..+. ++-..+..++|++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3569999999999999888777                        479999999998887664 445678999999999


Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEe---------ecCCcceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEE
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF  574 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l---------~~h~~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i~~~  574 (732)
                      +++++...++.|++||.......+..+         .++-.....|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999987543234444         234457899999995456776775 689999999 457776666


Q ss_pred             ecc-----------CCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEE---
Q 004737          575 KCQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV---  637 (732)
Q Consensus       575 ~~~-----------~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasg---  637 (732)
                      ...           ..+..++++|+++.++++. .++.|++||..+++.+..+.  .+...+.+++|+| +..+++.   
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            422           2278899999955555554 57899999999888888774  4567889999999 3333322   


Q ss_pred             ----e-CCeEEEEECCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          638 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       638 ----s-Dg~I~IWDl~t~~~~~~i~~~---~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                          . +..|++||+.++   ..+..+   ..+......++++|+|..+++...++.|++|++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                2 348999999887   555555   34566789999999996666666778999998754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=3.8e-16  Score=166.61  Aligned_cols=252  Identities=11%  Similarity=0.101  Sum_probs=178.2

Q ss_pred             CeEEEEEcCCCCEEEEEE---------CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC---C--eEE
Q 004737          452 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR  517 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D---g--~I~  517 (732)
                      .|..++|  ||++++...         .++.|.+||+.+++... +    ..+..++|+|||++|+.++.+   +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            3667777  888887642         25689999999887543 3    568899999999999988754   3  477


Q ss_pred             EEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC--------------------------CCcEEEEECCCCeee
Q 004737          518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA  571 (732)
Q Consensus       518 IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~--------------------------Dg~I~iWDl~t~~~i  571 (732)
                      +||+.++.  ...+..+.. +..+.|+|+++.+++++..                          ...|++||+.+++.+
T Consensus        89 ~~~~~~g~--~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           89 VADLETLS--SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEETTTTE--EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEECCCCc--eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            77887654  233333334 9999999999877766532                          257999999988874


Q ss_pred             eEEeccCCeeEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C--
Q 004737          572 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D--  639 (732)
Q Consensus       572 ~~~~~~~~i~~v~~sp~g~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D--  639 (732)
                      ..+... .+..+.|+|++ .++++..+.         .|.++|  +++.. .+..+ ..+..+  +|+|++|+.++ +  
T Consensus       166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~  237 (347)
T 2gop_A          166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEK  237 (347)
T ss_dssp             EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred             eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEcccc
Confidence            444434 78899999998 666665432         455556  55443 33334 455544  99999887766 3  


Q ss_pred             ------CeEEEEECCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEE
Q 004737          640 ------ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA  712 (732)
Q Consensus       640 ------g~I~IWDl~t~~~~~~i~~~~~~~~~I~s-l~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~  712 (732)
                            ..|.+||  ++   ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus       238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~  309 (347)
T 2gop_A          238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV  309 (347)
T ss_dssp             SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred             CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence                  2677777  33   333333344567776 8999 88 88888999999999 877776666667888999999


Q ss_pred             eCCCCEEEEEECCCeE-EEe
Q 004737          713 STVNGMVASASHDKCV-KIW  731 (732)
Q Consensus       713 spdg~~LaSgs~DG~I-~IW  731 (732)
                      ++  .++++++.++.. .||
T Consensus       310 s~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          310 DE--IVVYLKETATRLRELF  327 (347)
T ss_dssp             SS--SEEEEEECSSSCCEEE
T ss_pred             eC--cEEEEEcCCCChHHhe
Confidence            99  678888777654 555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=4.3e-16  Score=165.58  Aligned_cols=267  Identities=8%  Similarity=0.044  Sum_probs=192.0

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      ..|.+++|++++..++..+.++.+++|   .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence            347888999998888777888999999   4566677777777889999999999888888899999999987653 333


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEc------
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------  597 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~D----g~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~------  597 (732)
                      ...+...+.+++|++++. ++++...+    +.|.+||..++.....+.   ....+..++++|++..+++...      
T Consensus        82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            335667899999999974 55555555    689999998876553332   2245889999999876665543      


Q ss_pred             CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCC-CCCceeE-----EEeecCCCceEEE
Q 004737          598 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC  669 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t-~~~~~~i-----~~~~~~~~~I~sl  669 (732)
                      .+.|..||..+++..... .+...+..++|+|++++|+.+.  ++.|.+||+.+ +.....+     ..+.. ...+..+
T Consensus       161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i  238 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC  238 (333)
T ss_dssp             CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred             CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence            356777887765543322 2334688999999998666554  78999999964 2211111     11111 1467889


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCC------CeeEEEEeCCCCEEEEEECC
Q 004737          670 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK------LVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~------~V~sla~spdg~~LaSgs~D  725 (732)
                      ++++++..+++...++.|.+||.. ++.+ .+..+..      .+.+++|+++++.|+.++.+
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            999999977777777899999985 4444 4433322      68999999998777766655

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=3.5e-15  Score=155.17  Aligned_cols=238  Identities=10%  Similarity=0.155  Sum_probs=175.1

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec------cCCCceEEEEE-cCCCCeEEEEeC-CCeEEE
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRV  518 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~------~h~~~V~~l~f-spdg~~Lasgs~-Dg~I~I  518 (732)
                      .+|-..+.+++++++++++++...++.|.+||.. ++.+..+.      ++...+.++++ .+++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3566779999999999988888889999999987 56666653      24457899999 467766666543 889999


Q ss_pred             EecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEE
Q 004737          519 WDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA  594 (732)
Q Consensus       519 WDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~  594 (732)
                      ||. ++.. +..+. .+...+.++++++++. ++++...++.|++||.. ++.+..+..   ...+..+++++++..+++
T Consensus       105 ~d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          105 YNQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             ECT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             ECC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            994 3443 44443 3446789999999974 66677778899999965 555655542   235789999999776555


Q ss_pred             EEcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEeCCCCEEEEEe-CC-eEEEEECCCCCCceeEEEeecCC--CceEE
Q 004737          595 AAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHS  668 (732)
Q Consensus       595 ~s~dg~I~IwDl~t~~~i~~l~~h--~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~t~~~~~~i~~~~~~~--~~I~s  668 (732)
                      ...++.|++||.. ++.+..+..+  ...+..|+++++|+++++.. ++ .|.+||.. +   ..+..+..+.  ..+..
T Consensus       181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~  255 (286)
T 1q7f_A          181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFD  255 (286)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEE
T ss_pred             ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCccee
Confidence            5668999999985 4555556433  36789999999999888877 65 99999964 3   3444444332  34789


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          669 CVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       669 l~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      ++++|++..+++ +.++.|++|++...
T Consensus       256 i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          256 VALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            999999975554 77899999998653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=1.9e-14  Score=165.65  Aligned_cols=300  Identities=11%  Similarity=0.010  Sum_probs=217.1

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcC--CCeEEEEeccCCCceEEEEEc--
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFS--  501 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~V~~l~fs--  501 (732)
                      +..+.++|..++.....+   .. ...+.++.|+|||+++++++.|+.|.+||+.  +++.+..+.... ....++|+  
T Consensus       176 ~~~V~viD~~t~~v~~~i---~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~  250 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVL---DT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM  250 (567)
T ss_dssp             TTEEEEEETTTCCEEEEE---EC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred             CCeEEEEECCCCeEEEEE---eC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence            345666777666544333   32 2357799999999999999999999999996  888888887544 46799999  


Q ss_pred             --CCCCeEEEEeC-CCeEEEEecCCCCceeEEeec----------CCc-ceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          502 --PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       502 --pdg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~~----------h~~-~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                        |||+++++++. ++.|.|||..+.+. +..+.-          |.. .+..+.+++++..+++....+|.|.++|...
T Consensus       251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~  329 (567)
T 1qks_A          251 EGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD  329 (567)
T ss_dssp             TTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred             cCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC
Confidence              69999887765 58999999988663 443321          222 5788899998888888888889999999987


Q ss_pred             Ceeee--EEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-----CCCCEEEEEEeCCC-CEEEEEe
Q 004737          568 GSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSG-EYLASVS  638 (732)
Q Consensus       568 ~~~i~--~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~-----h~~~V~sla~spdg-~~Lasgs  638 (732)
                      .+.+.  .+........+.|+|++++++++.. ++.|.++|+.+++.+..+..     |.+.-..+ ++|++ .+++++.
T Consensus       330 ~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~  408 (567)
T 1qks_A          330 LNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH  408 (567)
T ss_dssp             SSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred             CccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC
Confidence            54333  3333445778999999999888775 68999999999988776653     33222222 57874 4555554


Q ss_pred             --CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECCCC-----e-E-E
Q 004737          639 --DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMTEN-----K-T-L  698 (732)
Q Consensus       639 --Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-------dg~I~IwDl~t~-----~-~-~  698 (732)
                        ++.|.++|..+...    .+.+..+...+..-..+.++|+++++++...       .+.|.+||+.+.     . . .
T Consensus       409 ~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~  488 (567)
T 1qks_A          409 MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFK  488 (567)
T ss_dssp             SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEE
T ss_pred             CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcE
Confidence              68999999987332    3566777655444455778999999998763       359999999876     2 1 1


Q ss_pred             EEc--------cCCCCeeEEEEeCCCCEEEEEEC-----CCeEEEeC
Q 004737          699 TLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK  732 (732)
Q Consensus       699 ~~~--------~h~~~V~sla~spdg~~LaSgs~-----DG~I~IWD  732 (732)
                      .+.        .....+..+.|+++|++++.+..     ++.|.|+|
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          489 TLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             EECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             EeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence            121        12457899999999998777643     68888875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.73  E-value=5.2e-15  Score=153.85  Aligned_cols=233  Identities=12%  Similarity=0.118  Sum_probs=171.8

Q ss_pred             cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee------cCCcceEEEEEc-CCCCcEEEEEeC-CCcEE
Q 004737          490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFH-PSKEDLLCSCDN-NSEIR  561 (732)
Q Consensus       490 ~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~------~h~~~V~sl~fs-pdg~~llaSgs~-Dg~I~  561 (732)
                      ++-..+.++++++++.++++...++.|.+||... . .+..+.      ++...+..+++. ++ ..++++... ++.|+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~-~~~~~~~~~~~~~~~~~p~~i~~~~~~-g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-R-FKFQFGECGKRDSQLLYPNRVAVVRNS-GDIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-C-EEEEECCBSSSTTCBSSEEEEEEETTT-TEEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-c-EEEEecccCCCcccccCceEEEEEcCC-CeEEEEcCCCCCEEE
Confidence            4556789999999999888888899999999873 3 244442      244578899995 55 456655543 78999


Q ss_pred             EEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEE
Q 004737          562 YWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       562 iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasg  637 (732)
                      +|| .+++.+..+...  ..+..+++++++..+++...++.|.+||.. ++.+..+.  .+...+.+|+++++++++++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 557766666432  458899999998866666668899999965 45555553  345678999999999977776


Q ss_pred             e-CCeEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCeEEEEccCC--CCeeEEE
Q 004737          638 S-DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLA  711 (732)
Q Consensus       638 s-Dg~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~t~~~~~~~~h~--~~V~sla  711 (732)
                      . ++.|++||...    ..+..+...  ...+..+++++++..+++...++ .|.+||........+..+.  ..+.+++
T Consensus       182 ~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~  257 (286)
T 1q7f_A          182 NRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA  257 (286)
T ss_dssp             GGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE
T ss_pred             CCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEE
Confidence            6 88999999753    344455433  25788999999998777766675 9999996544333444433  3478999


Q ss_pred             EeCCCCEEEEEECCCeEEEeC
Q 004737          712 ASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       712 ~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++++++++++ +.|+.|+||+
T Consensus       258 ~~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          258 LMDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             EETTTEEEEE-ETTTEEEEEE
T ss_pred             ECCCCcEEEE-CCCCeEEEEE
Confidence            9999987776 6799999995

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=3.1e-16  Score=169.80  Aligned_cols=258  Identities=11%  Similarity=0.100  Sum_probs=176.7

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEE--cCCCC
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLS  505 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~f--spdg~  505 (732)
                      .+.+|+..++.   ......+|...+.+++|+|||++|+.++.++.|++||+.+++....+..+...+....|  +++++
T Consensus        61 ~l~~~d~~~g~---~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~  137 (388)
T 3pe7_A           61 NYYLLDLNTQV---ATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCT  137 (388)
T ss_dssp             EEEEEETTTCE---EEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSS
T ss_pred             eEEEEeCCCCc---eEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCC
Confidence            34556666653   23445567666767899999999999999999999999999888777767666655444  89999


Q ss_pred             eEEEEe----------------------CCCeEEEEecCCCCceeEEeecCCcceEEEEEcC-CCCcEEEEEeC-----C
Q 004737          506 RLATSS----------------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----N  557 (732)
Q Consensus       506 ~Lasgs----------------------~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fsp-dg~~llaSgs~-----D  557 (732)
                      +++...                      .+..|.+||+.++.  ...+..+...+..+.|+| ++..++++...     .
T Consensus       138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~  215 (388)
T 3pe7_A          138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVD  215 (388)
T ss_dssp             EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSS
T ss_pred             eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCc
Confidence            887532                      44789999999865  455556677899999999 88766655542     3


Q ss_pred             CcEEEEECCCCeeeeEEeccC--CeeEEEEeCCCCEEEEEEc-CC----eEEEEECCCCeEE--EEEcCCCCC---EEEE
Q 004737          558 SEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCR--LKLQGHKNQ---VHSV  625 (732)
Q Consensus       558 g~I~iWDl~t~~~i~~~~~~~--~i~~v~~sp~g~~ll~~s~-dg----~I~IwDl~t~~~i--~~l~~h~~~---V~sl  625 (732)
                      ..|.+||+..++.........  .+..+.|+|+++.|+..+. ++    .|++||+.+++..  ..+.++...   ...+
T Consensus       216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~  295 (388)
T 3pe7_A          216 ARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGS  295 (388)
T ss_dssp             CSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS
T ss_pred             ceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCC
Confidence            478888987665443333332  3667899999998866554 22    3999999988643  333321000   1123


Q ss_pred             EEeCCCCEEEEE---------e-CCeEEEEECCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-
Q 004737          626 CWNTSGEYLASV---------S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-  683 (732)
Q Consensus       626 a~spdg~~Lasg---------s-Dg~I~IWDl~t~~~~~~i~~~~~~~~-----------~I~sl~fspdg~~L~sgs~-  683 (732)
                      +|+|||+.|+..         . +..|++||+.++.    +..+..+..           .+..++|+|||+.|++++. 
T Consensus       296 ~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          296 LMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             EEEEEECCC------------CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             eEccCCCcceeEeeeccccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence            799999887753         2 5589999998862    233333443           4778899999998887775 


Q ss_pred             CC--eEEEEECCC
Q 004737          684 YE--TLELWNMTE  694 (732)
Q Consensus       684 dg--~I~IwDl~t  694 (732)
                      ++  .|+++++.+
T Consensus       372 ~g~~~l~~~~l~~  384 (388)
T 3pe7_A          372 HGKPALYLATLPE  384 (388)
T ss_dssp             TSSCEEEEEECCG
T ss_pred             CCceeEEEEECCh
Confidence            44  455555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=3.4e-16  Score=182.77  Aligned_cols=266  Identities=10%  Similarity=0.040  Sum_probs=178.6

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeE---------EEEEc--CCCCE-EEEEEC-CCcEEEEEcC--CCeEEEEecc--
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVE---------SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE--  490 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~---------~lafS--pdg~~-Lasgs~-Dg~I~VWd~~--t~~~~~~l~~--  490 (732)
                      ..++|....+.   ....+..|...|.         .+.|+  |||++ |+.++. +..|.+|++.  .......+..  
T Consensus        48 ~~~l~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~  124 (662)
T 3azo_A           48 RATLVRRRADG---AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS  124 (662)
T ss_dssp             EEEEEEECTTS---CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred             cEEEEEECCCC---CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence            45666643332   2345666666666         66665  99998 776654 5667777765  2033445555  


Q ss_pred             ---CCCceEEEEEcCCCCeEEEEeCC----------CeEEEEecCCCC----ceeEEee-cCCcceEEEEEcCCCCcEEE
Q 004737          491 ---HTQWITDVRFSPSLSRLATSSAD----------RTVRVWDTENPD----YSLRTFT-GHSTTVMSLDFHPSKEDLLC  552 (732)
Q Consensus       491 ---h~~~V~~l~fspdg~~Lasgs~D----------g~I~IWDl~s~~----~~~~~l~-~h~~~V~sl~fspdg~~lla  552 (732)
                         |...+.+++|+|||+.|++++.|          ..|++||+.+..    .....+. .+...+..++|+|||+.+++
T Consensus       125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~  204 (662)
T 3azo_A          125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVW  204 (662)
T ss_dssp             CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEE
T ss_pred             cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEE
Confidence               67789999999999999998877          589999998720    1234555 56678889999999987775


Q ss_pred             EEeCC-------CcEEEEECC-CC---eeeeEEec-cCCeeEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEEcCC
Q 004737          553 SCDNN-------SEIRYWSIN-NG---SCAGVFKC-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGH  618 (732)
Q Consensus       553 Sgs~D-------g~I~iWDl~-t~---~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg--~I~IwDl~t~~~i~~l~~h  618 (732)
                      +....       ..|++||+. ++   +....... ...+..+.|+|++..++++..++  .|++||+.+++.......+
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence            55432       479999999 56   44444443 46788999999999666666677  6777887777655433333


Q ss_pred             CCC--------EEEEEEeCCCCEEEEEeCCeEEEE--ECCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC--
Q 004737          619 KNQ--------VHSVCWNTSGEYLASVSDELVRVW--SIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE--  685 (732)
Q Consensus       619 ~~~--------V~sla~spdg~~LasgsDg~I~IW--Dl~t~~~~~~i~~~~~~~~~I~sl-~fspdg~~L~sgs~dg--  685 (732)
                      ...        +.+++|++++++++++.++.++||  |+.++    .+..+..+...+..+ .++.+.-.+++.+.+.  
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  360 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG----ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAY  360 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT----EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEE
T ss_pred             ccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC----cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCC
Confidence            222        567899999998888776777888  55443    355666666667766 4443332233333333  


Q ss_pred             eEEEEECCCCeEEEE
Q 004737          686 TLELWNMTENKTLTL  700 (732)
Q Consensus       686 ~I~IwDl~t~~~~~~  700 (732)
                      .|++||+.+++...+
T Consensus       361 ~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          361 EVVELDTVTGRARTI  375 (662)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCceEEe
Confidence            677778888876644

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=9.2e-14  Score=144.04  Aligned_cols=274  Identities=9%  Similarity=-0.035  Sum_probs=194.2

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE-eccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      +..+...+.+++++++|+++++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            44566789999999999987776667899999988 554432 23355779999999999988877778899999986 3


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      ......+......+.++++.+++ .++++...++.|.+||. +++......  ....+..+++.+++..+++...++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            32222222345578999999986 56656666789999998 555443221  224588999999987666555678999


Q ss_pred             EEECCCCeEEEE-EcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          603 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       603 IwDl~t~~~i~~-l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      +||. +++.... +......+.++++++++.++++.. ++.|.+||. ++..  ...........+..+++++++..+++
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence            9999 6654432 333456789999999999777665 789999998 5421  11223334567899999999985544


Q ss_pred             EEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          681 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       681 gs~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      ...++.|.+||. ++....+  ..+...+.++++ +++.++++...++.++
T Consensus       242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            446789999998 4554433  345578999999 8887776655444443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=2.9e-15  Score=159.80  Aligned_cols=251  Identities=16%  Similarity=0.155  Sum_probs=171.6

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC---C--cEEEEEcCCCeEEEEeccCCCceEEEEE
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRF  500 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D---g--~I~VWd~~t~~~~~~l~~h~~~V~~l~f  500 (732)
                      +..+.+|+...+..    ..+    ..+.+++|||||++||.++.+   +  .|.+||+.+++.......+ . +..++|
T Consensus        42 ~~~l~~~d~~~~~~----~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~w  111 (347)
T 2gop_A           42 ENTIVIENLKNNAR----RFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEW  111 (347)
T ss_dssp             EEEEEEEETTTCCE----EEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEE
T ss_pred             cceEEEEeCCCCce----EEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeE
Confidence            44566677766642    122    468899999999999887754   2  4888899888776555433 3 999999


Q ss_pred             cCCCCeEEEEeCC---------------------------CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEE
Q 004737          501 SPSLSRLATSSAD---------------------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  553 (732)
Q Consensus       501 spdg~~Lasgs~D---------------------------g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaS  553 (732)
                      +||++.|+.++.+                           ..|.+||+.++.. +..+.. . .+..+.|+|++  ++++
T Consensus       112 spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~  186 (347)
T 2gop_A          112 NEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVN  186 (347)
T ss_dssp             CTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEE
T ss_pred             CCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEE
Confidence            9999999888642                           5789999987653 234443 3 78999999998  6656


Q ss_pred             EeCCC-------cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCC
Q 004737          554 CDNNS-------EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGH  618 (732)
Q Consensus       554 gs~Dg-------~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h  618 (732)
                      +..+.       ...+|.+.+++....... ..+.  .++|+|++|++++.+        ..|++||  +++.......+
T Consensus       187 ~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~  261 (347)
T 2gop_A          187 VPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV  261 (347)
T ss_dssp             EECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred             EecccccccccccccEEEeCCCceEEeccC-ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence            65432       334443335655444433 3333  349999998888754        3688888  56555445556


Q ss_pred             CCCEEE-EEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCC
Q 004737          619 KNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTEN  695 (732)
Q Consensus       619 ~~~V~s-la~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I-~IwDl~t~  695 (732)
                      ...+.. +.|+ ++ +++++. ++.++|| +.++   .. ..+..+...|.+++|+|  ..+++++.++.. .+|.+. +
T Consensus       262 ~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g  331 (347)
T 2gop_A          262 DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-G  331 (347)
T ss_dssp             CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-S
T ss_pred             CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-C
Confidence            778886 9999 88 777777 8899999 8743   33 23334467899999999  667777777643 666665 6


Q ss_pred             eEEEEccCCCC
Q 004737          696 KTLTLSAHDKL  706 (732)
Q Consensus       696 ~~~~~~~h~~~  706 (732)
                      +...+..|...
T Consensus       332 ~~~~lt~~n~~  342 (347)
T 2gop_A          332 EEKQLTDYNDP  342 (347)
T ss_dssp             SEEECCCTTST
T ss_pred             cEEEeccccHh
Confidence            65566666543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=2.7e-14  Score=151.68  Aligned_cols=245  Identities=13%  Similarity=0.116  Sum_probs=176.1

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC----CeEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVR  517 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~I~  517 (732)
                      .+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+    +.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            345566777889999999999988888889999999999887766554566789999999999888877666    6899


Q ss_pred             EEecCCCCceeEEee--cCCcceEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC
Q 004737          518 VWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL  589 (732)
Q Consensus       518 IWDl~s~~~~~~~l~--~h~~~V~sl~fspdg~~llaSgs~------Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g  589 (732)
                      +||.++.... ..+.  .+...+.+++++|++. ++++...      .+.|..||..+++..........+..++|+|++
T Consensus       116 ~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          116 AATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             EECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             EEeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            9999876542 2222  2445789999999975 4445442      356777777665554444434567889999999


Q ss_pred             CEEEEEE-cCCeEEEEECCC-CeEEE--------EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737          590 GRILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       590 ~~ll~~s-~dg~I~IwDl~t-~~~i~--------~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~  658 (732)
                      +.++++. .++.|.+||+.+ +..+.        .+.++ ..+..++++++|+++++.. ++.|.+||.. +   ..+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~  268 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ  268 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence            8776665 478999999964 22111        11222 4678899999999887776 7899999984 3   34444


Q ss_pred             eecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEECC
Q 004737          659 LSCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT  693 (732)
Q Consensus       659 ~~~~~~------~I~sl~fspdg~~L~sgs~dg------~I~IwDl~  693 (732)
                      +.....      .+.+++|++++..|++++.++      .|+.+++.
T Consensus       269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             EEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            443332      588999999988888777663      45555543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=3.2e-15  Score=159.88  Aligned_cols=234  Identities=10%  Similarity=0.069  Sum_probs=172.6

Q ss_pred             CCceEEEEEcCCCCeEEEEeCC------------------------CeEEEEecCCCCceeEEee-cCCcceEEEEEcCC
Q 004737          492 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS  546 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~D------------------------g~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspd  546 (732)
                      -+.+.+|+++++|+++++...+                        +.|.+||..+++. ...+. ++-..+..++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence            3579999999999998888777                        4799999987764 33332 44567899999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCe-eeeEEec----------cCCeeEEEEeC-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 004737          547 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL  613 (732)
Q Consensus       547 g~~llaSgs~Dg~I~iWDl~t~~-~i~~~~~----------~~~i~~v~~sp-~g~~ll~~s-~dg~I~IwDl~t~~~i~  613 (732)
                      +. ++++...++.|++||..... .+..+..          -..+..++++| ++..+++.+ .++.|++|| .++..+.
T Consensus       102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            76 77677788999999986542 4444421          12478899999 555555554 589999999 5566666


Q ss_pred             EEcC----------CCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEee--cCCCceEEEEEeCCCCEEE
Q 004737          614 KLQG----------HKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       614 ~l~~----------h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~--~~~~~I~sl~fspdg~~L~  679 (732)
                      .+..          +-.....|+++|+ +.++++.. ++.|++||..++   +.+..+.  .+...+..++|+| +..+.
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence            6542          2234899999999 55555555 789999999866   5555553  3556788999999 33222


Q ss_pred             EE-------EcCCeEEEEECCCCeEEEE----ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          680 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       680 sg-------s~dg~I~IwDl~t~~~~~~----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.       ..+..|++||..+++.+..    ..+...+.+|++++++.++++...++.|++|+
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            22       2234899999999998844    35777899999999998888888899999985

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=2.7e-15  Score=177.49  Aligned_cols=245  Identities=8%  Similarity=-0.019  Sum_probs=176.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCC-----cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe-------
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------  515 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~-------  515 (732)
                      +|...+..++|||||++||.+..++     .|+|||+.+++.+.....+. .+..++|+|||+.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3444688999999999998776543     89999999998876432222 2678999999999999988766       


Q ss_pred             ---------EEEEecCCCCce-eEEee--cCCcceEEEEEcCCCCcEEEEEeC----CCcEEEEECCC------Ce-eee
Q 004737          516 ---------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG  572 (732)
Q Consensus       516 ---------I~IWDl~s~~~~-~~~l~--~h~~~V~sl~fspdg~~llaSgs~----Dg~I~iWDl~t------~~-~i~  572 (732)
                               |++|++.++... ...+.  .|...+..+.|+|+|+.++++...    +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999876532 22223  245568899999999888766642    56899999986      42 234


Q ss_pred             EEeccCCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCe--EEEEEcCCCC--CEEEEEEeCCCCEEEEEe-CC--e
Q 004737          573 VFKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L  641 (732)
Q Consensus       573 ~~~~~~~i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~~--~i~~l~~h~~--~V~sla~spdg~~Lasgs-Dg--~  641 (732)
                      .+..+.......|+++++.|++.+..    +.|.+||+.++.  ....+..|..  .+..++|++++.++++.. |+  .
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            44433322234588999988887764    369999998763  1233334433  688899997777777777 77  5


Q ss_pred             EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCe
Q 004737          642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK  696 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~  696 (732)
                      |.+||+.++   ..+..+..+...+..+.++|++..+++....    +.|++||+.+++
T Consensus       361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            677787665   4556666667778889999999777655433    589999998876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=1.3e-14  Score=151.97  Aligned_cols=242  Identities=10%  Similarity=0.058  Sum_probs=177.4

Q ss_pred             EecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC
Q 004737          445 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  523 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s  523 (732)
                      .+..+.....+++|+|+|+ +++++..++.|.+||..++  ...+..+...+.+++|+++++++++...++.|.+||..+
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            3445666788999999998 7788888999999999887  566666778899999999999888777778999999977


Q ss_pred             CCceeEEeecC----CcceEEEEEcCCCCcEEEE----Ee-------------CCCcEEEEECCCCeeeeEEeccCCeeE
Q 004737          524 PDYSLRTFTGH----STTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGATQ  582 (732)
Q Consensus       524 ~~~~~~~l~~h----~~~V~sl~fspdg~~llaS----gs-------------~Dg~I~iWDl~t~~~i~~~~~~~~i~~  582 (732)
                      +... ......    ...+..++++|+|. ++++    +.             ..+.|..|+.. ++.............
T Consensus       100 g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A          100 GEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             CCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            6632 221111    23467899999975 5545    22             13456666665 554444444455788


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECC-CCeE---EEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEE
Q 004737          583 MRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~-t~~~---i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~  658 (732)
                      ++|+|+++.+++.+.++.|.+||+. ++..   ...+..+...+.+++++++|+++++. ++.|.+||.. +   ..+..
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~~  251 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELGR  251 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEEE
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEEE
Confidence            9999999988555567899999997 4544   23333355667889999999977777 8899999986 3   55666


Q ss_pred             eecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          659 LSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       659 ~~~~~~~I~sl~f-spdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      +..+.. +.+++| .|+++.|++++.+ .|+.++.++.++.
T Consensus       252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~  290 (296)
T 3e5z_A          252 VLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE  290 (296)
T ss_dssp             EECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred             EECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence            666666 889999 5899988888775 5777777766543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=1.8e-14  Score=154.27  Aligned_cols=251  Identities=10%  Similarity=0.027  Sum_probs=187.2

Q ss_pred             CCCcEEEEEcCCCeEEEEec------cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEE
Q 004737          470 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  543 (732)
Q Consensus       470 ~Dg~I~VWd~~t~~~~~~l~------~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~f  543 (732)
                      .++.|.+||.++++....+.      ........+.+. +++.+++...++.|.+||..+.+. +..+. .......+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence            37899999999998776542      122346778874 345555666679999999998774 45554 3466889999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC------CeeEEEEeCCCCEEEEEE--cCCeEEEEECCCCeEEEEE
Q 004737          544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL  615 (732)
Q Consensus       544 spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~------~i~~v~~sp~g~~ll~~s--~dg~I~IwDl~t~~~i~~l  615 (732)
                      ++++ .++++...++.|.+||..+++....+....      ....+++  +++.++++.  .++.|.+||+.+++.+..+
T Consensus        92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            8886 666566578999999999999888777655      5667777  456777776  3789999999999888877


Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEe-C----------CeEEEEECCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 004737          616 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC  683 (732)
Q Consensus       616 ~~h~~~V~sla~spdg~~Lasgs-D----------g~I~IWDl~t~~~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~  683 (732)
                      ... .....++++++|++++++. +          +.|.+||..+.   +....+... ......++|+|++++|+++..
T Consensus       169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            643 3457899999999777765 4          68999999876   444444432 346899999999998888765


Q ss_pred             CCeEEEEECCCCeEEE--Ecc-CCCCeeEEEEeCCC-CEEEEE----ECCCeEEEeC
Q 004737          684 YETLELWNMTENKTLT--LSA-HDKLVSSLAASTVN-GMVASA----SHDKCVKIWK  732 (732)
Q Consensus       684 dg~I~IwDl~t~~~~~--~~~-h~~~V~sla~spdg-~~LaSg----s~DG~I~IWD  732 (732)
                        .|++||..+++...  +.. +......++++|++ .++++.    ..++.|.+||
T Consensus       245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence              89999999887641  111 24678999999954 455554    4688999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=2.4e-15  Score=162.65  Aligned_cols=258  Identities=9%  Similarity=0.036  Sum_probs=173.7

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCC-eEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEE---------
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD---------  497 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~-V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~---------  497 (732)
                      .+.+|+...+..    ..+..+... +.++.|+|||++|+.++.++.|++||+.+++....+..+......         
T Consensus        61 ~l~~~d~~~~~~----~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~  136 (396)
T 3c5m_A           61 NYYLLNLETQQA----VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDC  136 (396)
T ss_dssp             EEEEEETTTTEE----EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS
T ss_pred             eEEEEECCCCcE----EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccC
Confidence            445566666532    223333333 344889999999999999999999999998876666555544333         


Q ss_pred             ----------EEEcCCCCeEEEE-----eCCCeEEEEecCCCCceeEEeecCCcceEEEEEcC-CCCcEEEEEeCC----
Q 004737          498 ----------VRFSPSLSRLATS-----SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN----  557 (732)
Q Consensus       498 ----------l~fspdg~~Lasg-----s~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fsp-dg~~llaSgs~D----  557 (732)
                                +.|+|+++.++.+     ..+..|.+||+.++..  ..+..+...+..+.|+| ++..++++....    
T Consensus       137 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~  214 (396)
T 3c5m_A          137 TKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLV  214 (396)
T ss_dssp             SEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred             CccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCC
Confidence                      4567888877654     3567899999987653  33345677899999999 665565554322    


Q ss_pred             -CcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEEcCCCCCEEEEEEeC
Q 004737          558 -SEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       558 -g~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i~~l~~h~~~V~sla~sp  629 (732)
                       ..|++||+..++........  ..+..+.|+|+++.|++++.+     +.|++||+.+++...... .. ... +.|+|
T Consensus       215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~  291 (396)
T 3c5m_A          215 DARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSN  291 (396)
T ss_dssp             SCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEEC
T ss_pred             CceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccC
Confidence             46999998766543333321  136778999999988777654     449999999886544332 11 233 89999


Q ss_pred             -CCCEEEEEe-----------------CCeEEEEECCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEE
Q 004737          630 -SGEYLASVS-----------------DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLV  680 (732)
Q Consensus       630 -dg~~Lasgs-----------------Dg~I~IWDl~t~~~~~~i~~~~~~~~-----------~I~sl~fspdg~~L~s  680 (732)
                       +|++|+++.                 +..|++||+.++.. ..   +..+..           .+..++|+|+++.|++
T Consensus       292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  367 (396)
T 3c5m_A          292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QK---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF  367 (396)
T ss_dssp             SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CE---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EE---ccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence             999888743                 36899999987642 22   222222           2556789999998888


Q ss_pred             EEcC-C--eEEEEECCCCeEE
Q 004737          681 IGCY-E--TLELWNMTENKTL  698 (732)
Q Consensus       681 gs~d-g--~I~IwDl~t~~~~  698 (732)
                      ++.. +  .|+++++.++...
T Consensus       368 ~s~~~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          368 TSDFEGVPAIYIADVPESYKH  388 (396)
T ss_dssp             EECTTSSCEEEEEECCTTCC-
T ss_pred             EecCCCCceEEEEEEcccccc
Confidence            7764 3  5666777766554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=4.4e-14  Score=147.87  Aligned_cols=238  Identities=9%  Similarity=0.080  Sum_probs=171.8

Q ss_pred             eEEEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEE
Q 004737          483 TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  561 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~  561 (732)
                      ..+..+..+.....+++|+|+++ +++++..++.|.+||..++   ...+..+...+.+++|++++. ++++...++.|.
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~   93 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE   93 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence            33445555667789999999998 7788888999999999875   455666777899999999975 565666678999


Q ss_pred             EEECCCCeeeeEEec-----cCCeeEEEEeCCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEcCCC
Q 004737          562 YWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHK  619 (732)
Q Consensus       562 iWDl~t~~~i~~~~~-----~~~i~~v~~sp~g~~ll~~----s-------------~dg~I~IwDl~t~~~i~~l~~h~  619 (732)
                      +||..+++.......     ...+..++++++|..+++.    +             ..+.|..||.. ++. ..+..+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~  171 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR  171 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence            999988876544322     1245679999998877763    2             13467777766 443 3344566


Q ss_pred             CCEEEEEEeCCCCEEEEEe-CCeEEEEECC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737          620 NQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT  697 (732)
Q Consensus       620 ~~V~sla~spdg~~Lasgs-Dg~I~IWDl~-t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~  697 (732)
                      .....++|+|++++|++.. ++.|++|++. ++........+......+..++++++|..+++.  ++.|.+||.. ++.
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            7789999999999985555 7899999997 332101122223344556789999999855444  7899999987 544


Q ss_pred             E-EEccCCCCeeEEEE-eCCCCEEEEEECCCeEEE
Q 004737          698 L-TLSAHDKLVSSLAA-STVNGMVASASHDKCVKI  730 (732)
Q Consensus       698 ~-~~~~h~~~V~sla~-spdg~~LaSgs~DG~I~I  730 (732)
                      + .+..+.. +++++| .++++.|++++.++.+++
T Consensus       249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            4 5666666 999999 588899999888875554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=2.5e-13  Score=156.36  Aligned_cols=265  Identities=11%  Similarity=0.064  Sum_probs=194.9

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC--CCCceeEEeecCCcc
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT  537 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~--s~~~~~~~l~~h~~~  537 (732)
                      +++.++++...++.|.|||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+.  +.+ .+..+.... .
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~-~v~~i~~G~-~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT-TVAEIKIGS-E  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC-EEEEEECCS-E
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc-EeEEEecCC-C
Confidence            34456677778899999999999999888644 357799999999999999999999999995  554 344554333 4


Q ss_pred             eEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc------------CCeeEEEEeCCCCEEEEEEc-CCe
Q 004737          538 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY  600 (732)
Q Consensus       538 V~sl~fs----pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~------------~~i~~v~~sp~g~~ll~~s~-dg~  600 (732)
                      ...++|+    |+|+.++++...++.|.+||..+.+.+..+...            ..+..+.+++++..+++... .|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6799999    699999988888999999999999988876632            14677888888776665554 589


Q ss_pred             EEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec-----CCCceEEEEE
Q 004737          601 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF  671 (732)
Q Consensus       601 I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~-----~~~~I~sl~f  671 (732)
                      |.++|....+.  +..+. ......++.|+|++++|+++.  ++.|.+||+.++   +.+..+..     |.+.-.. .+
T Consensus       322 v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~  396 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV  396 (567)
T ss_dssp             EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred             EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence            99999987532  22332 345678899999999998877  789999999987   44443332     2221222 26


Q ss_pred             eCCCCEEEEEE--cCCeEEEEECCC-------CeEE-EEccCCCCeeEEEEeCCCCEEEEEEC-------CCeEEEeC
Q 004737          672 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK  732 (732)
Q Consensus       672 spdg~~L~sgs--~dg~I~IwDl~t-------~~~~-~~~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IWD  732 (732)
                      +|++..+++.+  .++.|.++|..+       .+.+ ++......-..+.++|++++|+....       ...|.|+|
T Consensus       397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            88865565554  457999999987       5555 44433333355778999999888663       34787775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=4.5e-14  Score=151.09  Aligned_cols=280  Identities=8%  Similarity=-0.040  Sum_probs=193.6

Q ss_pred             CCceeeeeecCCCceeEEEEE-ec--CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc
Q 004737          425 RDRVGRSAEVGKGFTFTEFQL-IP--ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~-l~--~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs  501 (732)
                      .+..+.++|..++.....+.. ..  .......++++. +++++++...++.|.+||..+++.+.++. .......++|+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence            356777777777643222100 01  122446778874 44455666667999999999999988885 34668999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCC-----cceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEe
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK  575 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~-----~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i~~~~  575 (732)
                      ++++.+++...++.|.+||..+.+. ...+....     .....+++  ++..++++.. .++.|.+||+.+++.+..+.
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEI-TGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEE-EEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeE-EEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            8885444444899999999998663 33333222     14566777  3456665654 48899999999999988888


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEcC----------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCeEEE
Q 004737          576 CQSGATQMRFQPRLGRILAAAIE----------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRV  644 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~d----------g~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~LasgsDg~I~I  644 (732)
                      .......++++++++.++++..+          +.|.+||..+++....+... ......++|+|++++|+++.. .|.+
T Consensus       170 ~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~  248 (328)
T 3dsm_A          170 IGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWR  248 (328)
T ss_dssp             CSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEE
T ss_pred             cCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEE
Confidence            76778889999998765555444          78999999999887766532 346899999999998887655 8999


Q ss_pred             EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-----cCCeEEEEECCCCeEEEEccCCCCeeEEEE
Q 004737          645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA  712 (732)
Q Consensus       645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-----~dg~I~IwDl~t~~~~~~~~h~~~V~sla~  712 (732)
                      ||..++.... ...+.........++++|++..|+++.     .++.|.+||.. ++.+....-......++|
T Consensus       249 ~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~  319 (328)
T 3dsm_A          249 MPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW  319 (328)
T ss_dssp             EETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred             EECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence            9998764311 111111245688999999655566665     56799999998 776633223334455665

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.65  E-value=3.5e-15  Score=176.11  Aligned_cols=246  Identities=10%  Similarity=0.012  Sum_probs=170.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-----EECCCcEEEEEcCCCeEEEEeccCCCce--EEEEEcCCCCeEEEEeCCCe-----
Q 004737          448 ASTSKVESCHFSPDGKLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT-----  515 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Las-----gs~Dg~I~VWd~~t~~~~~~l~~h~~~V--~~l~fspdg~~Lasgs~Dg~-----  515 (732)
                      +|...+.+++|||||++||.     |+.+..|+|||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            46667899999999999984     3445789999999988641  1122222  68899999999999998876     


Q ss_pred             --------EEEEecCCCCce---eEEeecCCcceEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEEeccCCee
Q 004737          516 --------VRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT  581 (732)
Q Consensus       516 --------I~IWDl~s~~~~---~~~l~~h~~~V~sl~fspdg~~llaSgs~D-g--~I~iWDl~t~~~i~~~~~~~~i~  581 (732)
                              |++|++.++...   +.....|...+..+.|+|+|+.++++...+ +  .|++||..+++..........+.
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    999999876532   222334556789999999998887666543 2  67777776665555554445556


Q ss_pred             EEEEeCCCCEEEEEEc----CCeEEEEECCCCeE---EEEEcCC-CCCEEEEEEeCCCCEEEEEe-CCeEEEEECC-CCC
Q 004737          582 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS  651 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~----dg~I~IwDl~t~~~---i~~l~~h-~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~-t~~  651 (732)
                      ...+ +++. +++.+.    ++.|.+||+.++..   ...+..+ ...|..++|+ ++.++++.. |+..+||.+. ++ 
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-  351 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG-  351 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence            6666 5666 655554    57899999987642   3333333 4568889998 666777766 8877777654 22 


Q ss_pred             CceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEEc
Q 004737          652 KGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS  701 (732)
Q Consensus       652 ~~~~i~~~~~~-~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~~~~~~  701 (732)
                        .....+..+ ...+..+.++|++..+++...+    +.|++||+.+++...+.
T Consensus       352 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          352 --KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             --CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             --CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence              344455444 5567778899999877755433    48999999988765444

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=1.2e-12  Score=135.72  Aligned_cols=275  Identities=8%  Similarity=-0.025  Sum_probs=192.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      +......+.++++.++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34456679999999999988877778999999988 55443 233344679999999999887777668899999988 5


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.+++..+++...++.|.
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            432222332346789999998864 55566667889999987 554422 11 234588899999988555544578999


Q ss_pred             EEECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          603 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       603 IwDl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      +||. +++... ....+...+.++++++++.++++.. .+.|.+||. ++.  ............+.++++++++..+++
T Consensus       171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~  246 (300)
T 2qc5_A          171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT  246 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence            9998 454333 2333456789999999998777666 668999998 332  112223334566889999999985544


Q ss_pred             EEcCCeEEEEECCCCeEEEE--ccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          681 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       681 gs~dg~I~IwDl~t~~~~~~--~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ...++.|.+||. +++...+  ......+.++++++++.++++.. . .|..+
T Consensus       247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            445689999998 4554433  33456789999999988666554 4 55544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.62  E-value=8.2e-14  Score=142.96  Aligned_cols=238  Identities=8%  Similarity=-0.042  Sum_probs=167.6

Q ss_pred             CeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          452 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       452 ~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      ...+++++++|++++ +...++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||......  ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence            578999999999777 446789999999776544332233445688999999998666555 88999999876442  22


Q ss_pred             ee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          531 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET  608 (732)
Q Consensus       531 l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t  608 (732)
                      +. .....+..+++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus       102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            22 2335789999999875 66666668899999876544332221 223578899999987555555678999999987


Q ss_pred             CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737          609 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL  687 (732)
Q Consensus       609 ~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I  687 (732)
                      .........+...+.+|+++++|.++++.. ++.|.+||.....   ...........+..+++++++..+++...++.|
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            765544333446789999999997777666 7799999987642   221111223568999999999877777778899


Q ss_pred             EEEECCCCe
Q 004737          688 ELWNMTENK  696 (732)
Q Consensus       688 ~IwDl~t~~  696 (732)
                      ++|++...+
T Consensus       258 ~~~~~~~~~  266 (270)
T 1rwi_B          258 VKLTSLEHH  266 (270)
T ss_dssp             EEECCCGGG
T ss_pred             EEEcCCCcc
Confidence            999987653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=1.5e-13  Score=162.53  Aligned_cols=268  Identities=8%  Similarity=-0.012  Sum_probs=182.4

Q ss_pred             CCCCEEEEEECCC-----cEEEEEcCCCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCCC-----eEEEEecCC
Q 004737          460 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN  523 (732)
Q Consensus       460 pdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~Dg-----~I~IWDl~s  523 (732)
                      |||++++....++     .|.+.+...++....+      .+|...+..++|+|||++||.+..++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7888877654332     3444454444433222      23445688999999999998876543     899999998


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc----------------EEEEECCCCeee--eEEec---cCCeeE
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ  582 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~----------------I~iWDl~t~~~i--~~~~~---~~~i~~  582 (732)
                      +......+..  ..+..++|+||++.++++.. ++.                |++|++.++...  ..+..   ...+..
T Consensus       161 g~~~~~~~~~--~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          161 AKELPDVLER--VKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (710)
T ss_dssp             TEEEEEEEEE--ECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCcccccC--cccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence            7643222222  23678999999887776654 433                999999887632  22222   223678


Q ss_pred             EEEeCCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC---eEEEE
Q 004737          583 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE---LVRVW  645 (732)
Q Consensus       583 v~~sp~g~~ll~~s~-----dg~I~IwDl~t------~~-~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg---~I~IW  645 (732)
                      +.|+|++++|++++.     +..|++||+.+      +. ....+..+...+.. .|+++|..|+..+  ++   .|.+|
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence            999999999988876     56899999986      42 34555556666655 4888988777665  22   69999


Q ss_pred             ECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEE
Q 004737          646 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA  720 (732)
Q Consensus       646 Dl~t~~~~~~i~~~~~~~~--~I~sl~fspdg~~L~sgs~dg--~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~La  720 (732)
                      |+.++... ....+..+..  .+..+.|++++.++++...++  .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus       317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            99876321 2233333333  678899997777777777787  5778888677654 6666777889999999987655


Q ss_pred             EE-E---CCCeEEEeC
Q 004737          721 SA-S---HDKCVKIWK  732 (732)
Q Consensus       721 Sg-s---~DG~I~IWD  732 (732)
                      .. +   ..+.|++||
T Consensus       396 ~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEECSSCCCEEEEEE
T ss_pred             EEEeCCCCCCEEEEEE
Confidence            33 3   346787775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.62  E-value=1.2e-13  Score=150.69  Aligned_cols=271  Identities=10%  Similarity=0.069  Sum_probs=193.2

Q ss_pred             EEEcCCCCEEEEEEC-----CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEe
Q 004737          456 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD  520 (732)
Q Consensus       456 lafSpdg~~Lasgs~-----Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWD  520 (732)
                      ....|+++.+++...     ++.|.++|..+++.+.++.....+ . ++++||++++++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            455689998888765     679999999999999998765555 4 99999999988876          367899999


Q ss_pred             cCCCCceeEEee-cC------CcceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEE
Q 004737          521 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       521 l~s~~~~~~~l~-~h------~~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~l  592 (732)
                      ..+.+. +..+. +.      ......+.|+|||+.++++.. .++.|.++|+.+++.+..+...+.  ...+......+
T Consensus       116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF  192 (386)
T ss_dssp             TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred             CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence            998764 44432 21      124667999999988887664 378999999999999998875442  23333344677


Q ss_pred             EEEEcCCeEEEEECCC-CeEEEEEcCC----CCCEE-EEEEe-CCCCEEEEEeCCeEEEEECCCCCCceeEEEee-----
Q 004737          593 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS-----  660 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t-~~~i~~l~~h----~~~V~-sla~s-pdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~-----  660 (732)
                      ++.+.||.+.++++.+ ++.......+    ..++. ...|. ++|++++...+|.|+++|+.+... ..+..+.     
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~  271 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA  271 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence            7888999999999986 5543322111    12222 24664 678777766689999999976532 1222221     


Q ss_pred             -----cCCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-
Q 004737          661 -----CTGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-  723 (732)
Q Consensus       661 -----~~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-  723 (732)
                           .....+..++++++++.+++...          ...|.++|+.+++.+....-...++.|+|++|++ +|+++. 
T Consensus       272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~  351 (386)
T 3sjl_D          272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST  351 (386)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred             cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence                 01122335778999999988754          2479999999999984444445789999999997 777655 


Q ss_pred             CCCeEEEeC
Q 004737          724 HDKCVKIWK  732 (732)
Q Consensus       724 ~DG~I~IWD  732 (732)
                      .++.|.|+|
T Consensus       352 ~~~~VsViD  360 (386)
T 3sjl_D          352 GDKTLYIHD  360 (386)
T ss_dssp             TTTEEEEEE
T ss_pred             CCCeEEEEE
Confidence            588999886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.61  E-value=2.2e-12  Score=140.93  Aligned_cols=267  Identities=9%  Similarity=0.007  Sum_probs=185.1

Q ss_pred             EEcCCCCEEEEEEC--CC---cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEec
Q 004737          457 HFSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDT  521 (732)
Q Consensus       457 afSpdg~~Lasgs~--Dg---~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWDl  521 (732)
                      ...|++++++++..  ..   .|.+||..+++.+.++.....+  .++|+||+++++++.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34467777766653  22   8899999999999888755544  999999999999886          3678999999


Q ss_pred             CCCCceeEEeecC-------CcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-EeccCCeeEEEEeCCC-CE
Q 004737          522 ENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GR  591 (732)
Q Consensus       522 ~s~~~~~~~l~~h-------~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~-~~~~~~i~~v~~sp~g-~~  591 (732)
                      .+.+. +..+.-.       ......+.|+|+|+.++++... ++.|.++| .+++.+.. +.....   +.+.+++ ..
T Consensus       105 ~t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~  179 (373)
T 2mad_H          105 VTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPST  179 (373)
T ss_pred             CCCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCce
Confidence            87653 3333211       1234689999999888866643 57899999 99988877 654332   4455555 34


Q ss_pred             EEEEEcCCeEEEEECCCCeEEEEEc-----CCCCCE-EEEEEeCCCCEE-EEEeCCeEEEEECCCCCCceeEEEeec---
Q 004737          592 ILAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSC---  661 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~~~i~~l~-----~h~~~V-~sla~spdg~~L-asgsDg~I~IWDl~t~~~~~~i~~~~~---  661 (732)
                      +++.+.||.+.++|. +++......     ....++ ....+.+++..+ +...++.+.+.|+..... ..+..+..   
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~  257 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSG  257 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCC
Confidence            566777999999999 776653321     112222 234566665544 334478999999975421 22222211   


Q ss_pred             -------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE
Q 004737          662 -------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS  723 (732)
Q Consensus       662 -------~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs  723 (732)
                             .......+.++|+++.+++...          .+.|.++|+.+++.+..........+++|+||++ +++++.
T Consensus       258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~  337 (373)
T 2mad_H          258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc
Confidence                   1122445789999998888764          3479999999999884444555789999999999 788877


Q ss_pred             -CCCeEEEeC
Q 004737          724 -HDKCVKIWK  732 (732)
Q Consensus       724 -~DG~I~IWD  732 (732)
                       .++.|.|||
T Consensus       338 ~~~~~V~ViD  347 (373)
T 2mad_H          338 AGTEVLHIYD  347 (373)
T ss_pred             CCCCeEEEEE
Confidence             489999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=1.7e-13  Score=140.56  Aligned_cols=233  Identities=7%  Similarity=-0.085  Sum_probs=164.0

Q ss_pred             ceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737          494 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  572 (732)
Q Consensus       494 ~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~  572 (732)
                      ...++++++++++++ +...++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence            678999999998776 446789999999875442 111123335688999999875 555555 8899999987654332


Q ss_pred             EE-eccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737          573 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       573 ~~-~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      .. .....+..+++++++..+++...++.|.+||..+.............+.+|+++++++++++.. ++.|.+||....
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            21 1224588999999987666556678999998766544333223334678999999999777666 789999998765


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      .   ...........+..+++++++..+++...++.|.+||.......... .+...+.+++++++++++++...++.|+
T Consensus       182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence            2   22222223366889999999965555556779999999776544332 3346789999999999888888899999


Q ss_pred             EeC
Q 004737          730 IWK  732 (732)
Q Consensus       730 IWD  732 (732)
                      +|+
T Consensus       259 ~~~  261 (270)
T 1rwi_B          259 KLT  261 (270)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            985

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.58  E-value=1.7e-12  Score=136.01  Aligned_cols=238  Identities=10%  Similarity=0.094  Sum_probs=168.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEE-------EECCCcEEEEEcCCCeEEEEec----cCCCceEEEEEcCC-CCeEEEEeCCCe
Q 004737          448 ASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRT  515 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Las-------gs~Dg~I~VWd~~t~~~~~~l~----~h~~~V~~l~fspd-g~~Lasgs~Dg~  515 (732)
                      ..-....+++|+++|.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++ +.+..
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~   93 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG   93 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence            34445789999999988887       5678999999988877653322    24467899999999 654444 44557


Q ss_pred             EEEEecCCCCceeEEe-ec-----CCcceEEEEEcCCCCcEEEEEeCC---------------CcEEEEECCCCeeeeEE
Q 004737          516 VRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVF  574 (732)
Q Consensus       516 I~IWDl~s~~~~~~~l-~~-----h~~~V~sl~fspdg~~llaSgs~D---------------g~I~iWDl~t~~~i~~~  574 (732)
                      |.+||.+ ++.  ..+ ..     ....+.++++++++. ++++...+               +.|..||.. ++.....
T Consensus        94 l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (314)
T 1pjx_A           94 LLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD  168 (314)
T ss_dssp             EEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred             EEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence            9999988 543  222 11     124588999999975 44454433               567788776 6555444


Q ss_pred             eccCCeeEEEEe----CCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEcCCC-CCEEEEEEeCCCCEEEEEe-CCe
Q 004737          575 KCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DEL  641 (732)
Q Consensus       575 ~~~~~i~~v~~s----p~g~~ll~~s-~dg~I~IwDl~-t~~-----~i~~l~~h~-~~V~sla~spdg~~Lasgs-Dg~  641 (732)
                      ........++|+    ++++.++++. .++.|.+||+. +++     ....+..+. ..+..++++++|.++++.. ++.
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            444567889999    9987776665 47899999986 443     223333343 5688999999999888876 789


Q ss_pred             EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 004737          642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE  694 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t  694 (732)
                      |.+||..++   ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus       249 i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          249 IEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999998765   333444455577999999999996666654 56899999865

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=8.7e-13  Score=137.96  Aligned_cols=241  Identities=10%  Similarity=0.056  Sum_probs=178.9

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC-Ccce
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV  538 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V  538 (732)
                      .+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+.|+|++|+  +.++.|..||. +++ .+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence            46789999999999999999999999998776 5789999999999888  45788999999 566 45556554 3578


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC-------CeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE
Q 004737          539 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC  611 (732)
Q Consensus       539 ~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~-------~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~  611 (732)
                      .++.+.++|..+++.++.++.|..+|. +++.+..+....       ....+++.++++++++...++.|.+||.+ ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            899999998666644433677888886 677777665322       24456788999999988889999999998 998


Q ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 004737          612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       612 i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~------~~I~sl~fspdg~~L~sgs~d  684 (732)
                      +.++... ..+.++.+.+++.+++++. ++.|..||..++   +.+.++....      ..+..+...++|..+++....
T Consensus       158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence            8888754 4566788889999998888 668999999887   5555554321      237888899999866665311


Q ss_pred             --------CeEEEEEC-CCCeEE-EEccC--CCCeeEEE
Q 004737          685 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA  711 (732)
Q Consensus       685 --------g~I~IwDl-~t~~~~-~~~~h--~~~V~sla  711 (732)
                              +..+++++ .+++.+ .+..+  -+.|++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence                    23456666 466665 44332  34566554

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.6e-11  Score=134.11  Aligned_cols=257  Identities=12%  Similarity=0.066  Sum_probs=180.4

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccC------
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------  491 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h------  491 (732)
                      .+.++|..++..   +..++....+  .++|+|||++|+++.          .++.|.+||..+++.+..+...      
T Consensus        48 ~v~v~D~~t~~~---~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~  122 (373)
T 2mad_H           48 QQWVLDAGSGSI---LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD  122 (373)
T ss_pred             EEEEEECCCCeE---EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence            455666666543   3344443444  899999999998886          3678999999999888776432      


Q ss_pred             -CCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          492 -TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       492 -~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                       ......++|+|||++|++++.  ++.|.++| .+++. +.. +. ..   .|+.+.|++...+++.+.||.+.+||. +
T Consensus       123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~  195 (373)
T 2mad_H          123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-A  195 (373)
T ss_pred             cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence             123568999999999999874  47899999 87653 444 33 11   235666777777778888999999999 8


Q ss_pred             CeeeeEEe-----c-cCC-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC----------CCCCEEEEEEe
Q 004737          568 GSCAGVFK-----C-QSG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWN  628 (732)
Q Consensus       568 ~~~i~~~~-----~-~~~-i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~~----------h~~~V~sla~s  628 (732)
                      ++......     . ... .....+.++++.++..+.++.+.++|+....  .+..+.-          .......++++
T Consensus       196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s  275 (373)
T 2mad_H          196 GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC
Confidence            77663322     1 111 1234567777777766788999999997652  2222211          12234457899


Q ss_pred             CCCCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCC
Q 004737          629 TSGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTEN  695 (732)
Q Consensus       629 pdg~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~t~  695 (732)
                      ++++.+++..           ++.|.++|+.+.   +.+..+. .......++|+||++ .++++. .++.|.+||+.++
T Consensus       276 ~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCCCEEEEEeccCCcccccCCCCeEEEEECCCC---EEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            9988777754           247999999887   6666664 344689999999999 677766 4789999999999


Q ss_pred             eEEEE
Q 004737          696 KTLTL  700 (732)
Q Consensus       696 ~~~~~  700 (732)
                      +.+..
T Consensus       352 ~vv~~  356 (373)
T 2mad_H          352 DQDQS  356 (373)
T ss_pred             CEEee
Confidence            98844

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=2.2e-13  Score=161.88  Aligned_cols=245  Identities=12%  Similarity=0.039  Sum_probs=166.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCe--------
Q 004737          449 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--------  515 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~--------  515 (732)
                      |...+..++|||||++||.++.+     ..|+|||+.+++.+... .+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44468899999999999887654     46999999999876532 12222357899999 99998887654        


Q ss_pred             ------EEEEecCCCCce-eEEee--cCCcceEEEEEcCCCCcEEEEEeC----CCcEEEEECCCC--eeeeEEe-ccCC
Q 004737          516 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG  579 (732)
Q Consensus       516 ------I~IWDl~s~~~~-~~~l~--~h~~~V~sl~fspdg~~llaSgs~----Dg~I~iWDl~t~--~~i~~~~-~~~~  579 (732)
                            |++|++.++... ...+.  .+...+..+.|+|||+.+++++..    ...|++||+.++  ++...+. ....
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  899999776532 22232  233458899999999887766653    348999999877  4133333 3333


Q ss_pred             eeEEEEeCCCCEEEEEEcC----CeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECC-CCC
Q 004737          580 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS  651 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~-t~~  651 (732)
                      +... ++++++.|++.+.+    +.|.+||+.++  .....+..+...+..++|+ ++.++++.. |+..+||.+. ++ 
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-  395 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG-  395 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence            4444 45889999888764    45999999884  3444445455567778887 555666666 8876666554 22 


Q ss_pred             CceeEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCeEEEE
Q 004737          652 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL  700 (732)
Q Consensus       652 ~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~----dg~I~IwDl~t~~~~~~  700 (732)
                        .....+.. ....+..+.++|++..|+....    .+.|++||+.+++...+
T Consensus       396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence              34445543 3567888999999876664433    24899999998875544

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=2.3e-13  Score=160.50  Aligned_cols=268  Identities=12%  Similarity=-0.004  Sum_probs=172.7

Q ss_pred             cCCCCEEEEEECCC---c--EEEEEcCCCeEEEEec------cCCCceEEEEEcCCCCeEEEE-----eCCCeEEEEecC
Q 004737          459 SPDGKLLATGGHDK---K--AVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE  522 (732)
Q Consensus       459 Spdg~~Lasgs~Dg---~--I~VWd~~t~~~~~~l~------~h~~~V~~l~fspdg~~Lasg-----s~Dg~I~IWDl~  522 (732)
                      +|+|++++....++   .  |.+.+...++....+.      +|...+..++|+|||++||.+     +.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37898887766543   2  4444544554433332      455679999999999999844     345689999999


Q ss_pred             CCCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCc-------------EEEEECCCCee--eeEEec---cCCeeEE
Q 004737          523 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM  583 (732)
Q Consensus       523 s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~-------------I~iWDl~t~~~--i~~~~~---~~~i~~v  583 (732)
                      ++... ...+..  .....++|+|||+.++++. .|..             |++|++.++..  ...+..   ...+..+
T Consensus       156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             TCCBCSSCCBSC--CTTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCCcCCcccCc--ccccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            87642 111111  1126899999987776554 4444             99999988763  222222   2357889


Q ss_pred             EEeCCCCEEEEEEcCC----eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCcee
Q 004737          584 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC  655 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg----~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~  655 (732)
                      .|+|+|++|++++.++    .|++||..++... .+..+...+....| +++.+++.+.    ++.|.+||+.++.....
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            9999999998888766    7888877665433 33345556666667 5555444443    35899999987632112


Q ss_pred             EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEEccC-CCCeeEEEEeCCCCEEEEEE----CCCe
Q 004737          656 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC  727 (732)
Q Consensus       656 i~~~~~~-~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~t~~~~~~~~h-~~~V~sla~spdg~~LaSgs----~DG~  727 (732)
                      ...+..+ ...+..++|+ ++..+++...++..+||  ++..+....+..+ ...|..++++++++.|+...    ..+.
T Consensus       311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred             eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence            2223222 4567888888 66777778888866666  4433333344444 66788889999987666332    3467


Q ss_pred             EEEeC
Q 004737          728 VKIWK  732 (732)
Q Consensus       728 I~IWD  732 (732)
                      |++||
T Consensus       390 v~~~d  394 (695)
T 2bkl_A          390 IYKTS  394 (695)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=2.5e-11  Score=125.52  Aligned_cols=239  Identities=10%  Similarity=0.029  Sum_probs=167.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE-EEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  526 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~-~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~  526 (732)
                      .+...+.+++++++|.++++...++.|..||.. ++. ...+......+.++++.+++.++++...++.|.+||. ++..
T Consensus        54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            455779999999999988877778899999986 333 2222334567899999999988887777889999998 4443


Q ss_pred             eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Ee-ccCCeeEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISIL  604 (732)
Q Consensus       527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~Iw  604 (732)
                      .......+...+..+++.+++ .++++...++.|.+||. +++.... .. ....+..+++++++..+++...++.|.+|
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI  209 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence            322333345678999999987 55656666789999999 6665432 11 22457889999998765555557899999


Q ss_pred             ECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737          605 DVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       605 Dl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      |. +++... .+..+...+.+++++++|.++++.. ++.|.+||.. +.  .....+......+.++++ +++. |+++.
T Consensus       210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~--~~~~~~~~~~~~~~~i~~-~~g~-l~v~~  283 (299)
T 2z2n_A          210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI--IEEYPIQIKSAEPHGICF-DGET-IWFAM  283 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE--EEEEECSSSSCCEEEEEE-CSSC-EEEEE
T ss_pred             CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc--eEEEeCCCCCCccceEEe-cCCC-EEEEe
Confidence            99 665433 2333556899999999999777664 7899999983 31  111122334567899999 8887 45555


Q ss_pred             cCCeEEEEECCCCe
Q 004737          683 CYETLELWNMTENK  696 (732)
Q Consensus       683 ~dg~I~IwDl~t~~  696 (732)
                      ..+.|..++..+++
T Consensus       284 ~~~~l~~~~~~~~~  297 (299)
T 2z2n_A          284 ECDKIGKLTLIKDN  297 (299)
T ss_dssp             TTTEEEEEEEC---
T ss_pred             cCCcEEEEEcCccc
Confidence            56788888876654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=3.9e-12  Score=133.25  Aligned_cols=238  Identities=8%  Similarity=-0.017  Sum_probs=163.7

Q ss_pred             CCCceEEEEEcCCCCeEEE-------EeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          491 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Las-------gs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      .-....+++|++++.++++       +..++.|.+||..+++......   .++...+.++++++++..++++.. +..|
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l   94 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL   94 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence            3445789999999987777       5678999999987766422111   124567899999998335554444 4479


Q ss_pred             EEEECCCCeeeeE-Eec-----cCCeeEEEEeCCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEcCCC
Q 004737          561 RYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGHK  619 (732)
Q Consensus       561 ~iWDl~t~~~i~~-~~~-----~~~i~~v~~sp~g~~ll~~s~d---------------g~I~IwDl~t~~~i~~l~~h~  619 (732)
                      .+||.. ++.... ...     ...+..+++++++..+++...+               +.|..||.. ++..... .+.
T Consensus        95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~  171 (314)
T 1pjx_A           95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF  171 (314)
T ss_dssp             EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred             EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence            999998 665433 221     1247899999998776666554               578888876 5443332 234


Q ss_pred             CCEEEEEEe----CCCCEEEEEe--CCeEEEEECC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          620 NQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       620 ~~V~sla~s----pdg~~Lasgs--Dg~I~IWDl~-t~~~--~~~i~~~~~~~-~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                      .....++|+    ++++.|+.+.  ++.|.+||+. ++..  ...+..+..+. .....++++++|..+++...++.|.+
T Consensus       172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            457899999    9997666554  7899999986 3311  01223333333 56788999999987777777889999


Q ss_pred             EECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737          690 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  732 (732)
Q Consensus       690 wDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD  732 (732)
                      ||..+++.+ .+..+...+.+++|++++++|+.++ .++.|..|+
T Consensus       252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            999866554 4445667899999999999555544 567787764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=3.2e-12  Score=139.37  Aligned_cols=275  Identities=11%  Similarity=0.105  Sum_probs=185.6

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccCC----
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT----  492 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~----  492 (732)
                      ..+.+.|..++.....+.   ....+ . ++++|||++|+++.          .++.|.+||..+++.+.++....    
T Consensus        59 ~~V~ViD~~t~~v~~~I~---vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~  133 (386)
T 3sjl_D           59 TQQFVIDGEAGRVIGMID---GGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF  133 (386)
T ss_dssp             EEEEEEETTTTEEEEEEE---ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CEEEEEECCCCeEEEEEE---CCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcccc
Confidence            355566666665544443   33334 3 99999999887765          36789999999999988875321    


Q ss_pred             ---CceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          493 ---QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       493 ---~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                         .....++|+|||++++++..  ++.|.|+|+.+.+. +..+.-..    |..+.|.+...+++.+.||.+.+.++.+
T Consensus       134 ~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          134 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCC
Confidence               24567999999999998874  68999999998764 44443211    2233455555565777799999999976


Q ss_pred             -CeeeeEEe-cc----CCe-eEEEEeCCCCEEEEEEcCCeEEEEECCCCe--EEEEEc---------C-CCCCEEEEEEe
Q 004737          568 -GSCAGVFK-CQ----SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWN  628 (732)
Q Consensus       568 -~~~i~~~~-~~----~~i-~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--~i~~l~---------~-h~~~V~sla~s  628 (732)
                       ++...... ..    ..+ ....|.+..+.++..+.+|.|+++|+.+..  .+..+.         + ..+.+..++++
T Consensus       209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~  288 (386)
T 3sjl_D          209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH  288 (386)
T ss_dssp             SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred             CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC
Confidence             55432111 10    111 124665434566667778999999997653  322221         0 12233457789


Q ss_pred             CCCCEEEEEe--C---------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCC
Q 004737          629 TSGEYLASVS--D---------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTEN  695 (732)
Q Consensus       629 pdg~~Lasgs--D---------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs~-dg~I~IwDl~t~  695 (732)
                      ++++.++...  +         +.|.++|+.+.   +.+..+.. +..++.|.|++|++ +|+++.. ++.|.++|..++
T Consensus       289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCeEEEEeccccccccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            9988887764  1         47999999988   55555543 34688999999996 6666554 789999999999


Q ss_pred             eEEEEccCCCCeeEEEEeCC
Q 004737          696 KTLTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       696 ~~~~~~~h~~~V~sla~spd  715 (732)
                      +.+......+..+.|.+++|
T Consensus       365 k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          365 EELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             CEEEEECCCCSSCCEEEECC
T ss_pred             cEEEEecCCCCCceeEECCc
Confidence            99855555555666777766

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.50  E-value=3e-12  Score=141.77  Aligned_cols=266  Identities=8%  Similarity=0.045  Sum_probs=187.2

Q ss_pred             CCCCEEEEEECC-----CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEecCCC
Q 004737          460 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP  524 (732)
Q Consensus       460 pdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWDl~s~  524 (732)
                      ++++.+++....     +.|.++|..+++.+.++.....+  .++++||+++|+++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466766655542     69999999999999999766555  899999999988886          3678999999987


Q ss_pred             CceeEEee-c------CCcceEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEE
Q 004737          525 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA  595 (732)
Q Consensus       525 ~~~~~~l~-~------h~~~V~sl~fspdg~~llaSgs~-Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~  595 (732)
                      +. +..+. +      .......+.|+||+++++++... ++.|.++|+.+++.+..+.....   ....|++ ..+++.
T Consensus       160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN  235 (426)
T ss_dssp             CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred             cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence            74 44432 2      12345678999999888766543 68899999999999988875432   3334433 566777


Q ss_pred             EcCCeEEEEECCCCeEEEEE----cCCCCCE-EEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--------
Q 004737          596 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------  661 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l----~~h~~~V-~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~--------  661 (732)
                      +.||.+.+.+..+++.....    .....++ ..+.|.+++..++... ++.|.+.|+..... ..+..+..        
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD  314 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence            78898888888666544321    1111221 2356788888777666 78999999865421 11111110        


Q ss_pred             --CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCe
Q 004737          662 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC  727 (732)
Q Consensus       662 --~~~~I~sl~fspdg~~L~sgs~----------dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~  727 (732)
                        .......+++++++.++++...          .+.|.++|+.+.+.+....-....+.++|+||++ +++++. .++.
T Consensus       315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~  394 (426)
T 3c75_H          315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT  394 (426)
T ss_dssp             TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred             ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence              0111223689999998888753          3479999999999884333334689999999999 888888 5899


Q ss_pred             EEEeC
Q 004737          728 VKIWK  732 (732)
Q Consensus       728 I~IWD  732 (732)
                      |.|+|
T Consensus       395 VsVID  399 (426)
T 3c75_H          395 LHIYD  399 (426)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=2.3e-12  Score=153.17  Aligned_cols=267  Identities=12%  Similarity=0.025  Sum_probs=170.8

Q ss_pred             CCCCEEEEEECCCc---EEEEE--cC---CCeEEEEe------ccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEe
Q 004737          460 PDGKLLATGGHDKK---AVLWC--TE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWD  520 (732)
Q Consensus       460 pdg~~Lasgs~Dg~---I~VWd--~~---t~~~~~~l------~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWD  520 (732)
                      |||++++....++.   ..||.  ..   .++....+      .+|...+..++|+|||++||.++.+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            89998877664432   45554  43   33333222      2344468899999999999887654     4699999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC-------------cEEEEECCCCee--eeEEeccC---CeeE
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQS---GATQ  582 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-------------~I~iWDl~t~~~--i~~~~~~~---~i~~  582 (732)
                      +.+++. +.. ..+...+..++|+|| +.++++...+.             .|++|++.++..  ...+....   .+..
T Consensus       196 l~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          196 VADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             TTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            998774 222 212223467899999 77776654332             399999987653  22333222   3788


Q ss_pred             EEEeCCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C----CeEEEEECCCC
Q 004737          583 MRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSG  650 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg-----~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg~~Lasgs-D----g~I~IWDl~t~  650 (732)
                      +.|+|+|++|++.+.++     .|++||+.++  ++...+..+...+.... +|+|..|+..+ +    +.|.+||+.++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            99999999998887654     8999999877  31445555555555554 48888887766 2    35999998774


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEEEEcc-CCCCeeEEEEeCCCCEEE-EEE---
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS---  723 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~t~~~~~~~~-h~~~V~sla~spdg~~La-Sgs---  723 (732)
                      . ......+..+...+..+.|+ ++..+++...++..+||  ++..+....+.. +...|..++++++++.|+ +.+   
T Consensus       352 ~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~  429 (741)
T 1yr2_A          352 T-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFT  429 (741)
T ss_dssp             S-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETT
T ss_pred             c-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCC
Confidence            2 12333334444556677787 55667777778865555  554443334443 467789999999987555 322   


Q ss_pred             CCCeEEEeC
Q 004737          724 HDKCVKIWK  732 (732)
Q Consensus       724 ~DG~I~IWD  732 (732)
                      ..+.|++||
T Consensus       430 ~P~~i~~~d  438 (741)
T 1yr2_A          430 QPATVLALD  438 (741)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEE
Confidence            346787775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.48  E-value=6.6e-12  Score=131.21  Aligned_cols=210  Identities=15%  Similarity=0.131  Sum_probs=162.7

Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCC-cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CC
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SG  579 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~-~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~  579 (732)
                      .+++|++++.|+.|.+||.++++. +..+..+. ..+.++.+.|+|+ ++++  .++.|..||. +++.+..+...  ..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~-~w~~~~~~~~~~~~~~~~pdG~-ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~   78 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEI-VWEYPLEKGWECNSVAATKAGE-ILFS--YSKGAKMITR-DGRELWNIAAPAGCE   78 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEE-EEEEECCTTCCCCEEEECTTSC-EEEE--CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeE-EEEeCCCccCCCcCeEECCCCC-EEEe--CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence            457899999999999999988774 56666555 4789999999975 5543  3778999999 79999888864  35


Q ss_pred             eeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC
Q 004737          580 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS  651 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~  651 (732)
                      +.++.+.++++.+++.+. ++.|..+|. +++.+..+..      +......+++.++|.+|++.. ++.|.+||.. + 
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-  155 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-  155 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-
Confidence            778899999999998887 788888886 6666665541      222455677899999999888 8999999987 6 


Q ss_pred             CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC------CCeeEEEEeCCCCEEEEEE
Q 004737          652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~------~~V~sla~spdg~~LaSgs  723 (732)
                        +.+..+... .....+.+.+++..++++..++.|..||..+++.+ .+..+.      ..+..+...+++.++++..
T Consensus       156 --~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          156 --QLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             --CEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             --CEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence              556565543 45567788999998888888889999999989887 443321      2378888889998888763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.47  E-value=8.8e-11  Score=123.31  Aligned_cols=228  Identities=10%  Similarity=0.034  Sum_probs=157.1

Q ss_pred             eccCCCceEEEEEcCCC-CeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          488 LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       488 l~~h~~~V~~l~fspdg-~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                      +..+.....+..|++++ .++++...++.|..||..++..  ..+ .....+.++++++++. ++++ . +..|.+||..
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~   81 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK   81 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence            44455567789999964 4556666789999999987653  223 2456799999999987 4433 3 5679999999


Q ss_pred             CCeeeeEEecc-----CCeeEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCC
Q 004737          567 NGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       567 t~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~d-----------g~I~IwDl~t~~~i~~l~~h~~~V~sla~spd  630 (732)
                      +++........     ..+..+++++++..+++...+           +.|+.+|.. ++... +..+....+.++|+|+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence            88765444321     236789999998866544332           345555543 33322 2223455789999999


Q ss_pred             CCEEEEEe--CCeEEEEECC--CCCC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC
Q 004737          631 GEYLASVS--DELVRVWSIG--SGSK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH  703 (732)
Q Consensus       631 g~~Lasgs--Dg~I~IWDl~--t~~~--~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h  703 (732)
                      ++.|+.+.  ++.|.+||+.  ++..  ...+..+.........++++++|..+++....+.|.+||..+++.+ .+..+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            99776665  7899999974  4421  1223333334456789999999986666667778999999988877 55556


Q ss_pred             CCCeeEEEEe-CCCCEEEEEE
Q 004737          704 DKLVSSLAAS-TVNGMVASAS  723 (732)
Q Consensus       704 ~~~V~sla~s-pdg~~LaSgs  723 (732)
                      ...+++++|. |+++.|+.++
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCceEEEEeCCCCCEEEEEc
Confidence            6789999998 8887666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.46  E-value=3.7e-11  Score=132.79  Aligned_cols=230  Identities=10%  Similarity=0.029  Sum_probs=161.3

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCee
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC  570 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~  570 (732)
                      .....|+|+++++++++...++.|++||..++.. ...... ..... ++|++++..++ +++.++  .|.+|+...+..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence            4688999999999777777789999999987543 233333 33334 99999986555 444444  799999876654


Q ss_pred             eeEE----e-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE----EcCCCCCE--EEEEEeCCCCEEEEEe-
Q 004737          571 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS-  638 (732)
Q Consensus       571 i~~~----~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~----l~~h~~~V--~sla~spdg~~Lasgs-  638 (732)
                      ...+    . ....+.+++++|+++.|+++..++.|+.||..++.....    ..++...-  ..++|+|++..|+.+. 
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            4443    2 234578899999777787777788999999987754332    22222222  3999999655555554 


Q ss_pred             -CCeEEEEECCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEc
Q 004737          639 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS  701 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~~~~---------------~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~~  701 (732)
                       ++.|+.|+....     +..+.+.               -.....++|++++.++++-. .++.|+.|++.++...++.
T Consensus       287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence             779999987643     1222221               13478899999999555555 5779999998888877665


Q ss_pred             cC---------------CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          702 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       702 ~h---------------~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ++               -.....+++++++.++++-..++.|+.+
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            55               2468999999998777777777888765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.46  E-value=2.3e-10  Score=118.29  Aligned_cols=236  Identities=9%  Similarity=0.002  Sum_probs=165.5

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737          447 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      ..+...+.++++.++|+++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..||.. +.
T Consensus        58 ~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence            3445679999999999887777667899999988 5543 2233344678999999999888877778899999987 44


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .....+......+.++++.+++. ++++...++.|.+||. +++... +..   ...+..+++.+++..+++....+.|.
T Consensus       136 ~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  212 (300)
T 2qc5_A          136 IYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIG  212 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             EEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence            32222333456789999999875 6656666788999998 555443 322   23578899999876555555567899


Q ss_pred             EEECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          603 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       603 IwDl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      +||. ++.... .+..+...+.+++++++|+++++.. ++.|.+||.. +.  .....+......+.+++++++|. |++
T Consensus       213 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v  287 (300)
T 2qc5_A          213 RITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT--IQEYQLQTENAEPHGITFGKDGS-VWF  287 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEEECCSTTCCCCCEEECTTSC-EEE
T ss_pred             EEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc--EEEEECCccCCccceeEeCCCCC-EEE
Confidence            9998 444333 3334556789999999998766665 6899999983 31  12222333345688899999998 444


Q ss_pred             EEcCCeEEEEECC
Q 004737          681 IGCYETLELWNMT  693 (732)
Q Consensus       681 gs~dg~I~IwDl~  693 (732)
                      ++.. .|..+|..
T Consensus       288 ~~~~-~i~~~~p~  299 (300)
T 2qc5_A          288 ALKC-KIGKLNLN  299 (300)
T ss_dssp             ECSS-EEEEEEEC
T ss_pred             EccC-ceEEeCCC
Confidence            4444 77777753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.45  E-value=1.3e-10  Score=121.93  Aligned_cols=229  Identities=13%  Similarity=0.112  Sum_probs=158.0

Q ss_pred             cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737          447 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      ..+..-..+..|++++. ++++...++.|..||..+++.. .+ .....+.+++|+++++++++ . +..|.+||.+++.
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            33444566899999654 5566667899999999887653 33 24567999999999995554 4 5689999998765


Q ss_pred             ceeEEeec-----CCcceEEEEEcCCCCcEEEEEeC--------CCcEEEEECCC-CeeeeEEeccCCeeEEEEeCCCCE
Q 004737          526 YSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDN--------NSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGR  591 (732)
Q Consensus       526 ~~~~~l~~-----h~~~V~sl~fspdg~~llaSgs~--------Dg~I~iWDl~t-~~~i~~~~~~~~i~~v~~sp~g~~  591 (732)
                      .  ..+..     ....+..++++|+|..++.+...        .....+|.+.. ++.............++|+|+++.
T Consensus        85 ~--~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~  162 (297)
T 3g4e_A           85 A--VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKI  162 (297)
T ss_dssp             E--EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCE
T ss_pred             E--EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCE
Confidence            3  22221     12357889999998644433221        12234454432 444433443455778999999988


Q ss_pred             EEEEEc-CCeEEEEEC--CCCeE-----EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737          592 ILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT  662 (732)
Q Consensus       592 ll~~s~-dg~I~IwDl--~t~~~-----i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~  662 (732)
                      ++++.. ++.|.+||+  .++..     ...+..+...+..++++++|.++++.. ++.|.+||..++   +.+..+...
T Consensus       163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p  239 (297)
T 3g4e_A          163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLP  239 (297)
T ss_dssp             EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECS
T ss_pred             EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECC
Confidence            776655 689999987  45432     223333446788999999998877776 678999999877   566677666


Q ss_pred             CCceEEEEEe-CCCCEEEEEEcC
Q 004737          663 GNKFHSCVFH-PTFPSLLVIGCY  684 (732)
Q Consensus       663 ~~~I~sl~fs-pdg~~L~sgs~d  684 (732)
                      ...+++++|. |+++.|++++..
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCceEEEEeCCCCCEEEEEcCC
Confidence            6789999998 888888877754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.45  E-value=5.6e-12  Score=148.74  Aligned_cols=244  Identities=14%  Similarity=0.056  Sum_probs=167.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--------
Q 004737          448 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--------  514 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--------  514 (732)
                      +|...|..++|||||++||.+.     .+..|+|||+++++.+.... +......++|+ |++.|+.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3555688899999999988543     23579999999998654311 11113567899 999999998874        


Q ss_pred             -----eEEEEecCCCCcee-EEe--ec-CCcceEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCe-eeeEEecc-CCe
Q 004737          515 -----TVRVWDTENPDYSL-RTF--TG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKCQ-SGA  580 (732)
Q Consensus       515 -----~I~IWDl~s~~~~~-~~l--~~-h~~~V~sl~fspdg~~llaSgs~D---g~I~iWDl~t~~-~i~~~~~~-~~i  580 (732)
                           .|++|++.++...- ..+  .. |...+..+.|+||++.++++...+   ..|++||+.++. ....+... ...
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 39999998765322 222  22 444578899999999888776533   589999998763 23333332 333


Q ss_pred             eEEEEeCCCCEEEEEEcC----CeEEEEECCCCeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCC
Q 004737          581 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG  650 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~~~--i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~  650 (732)
                      ... ++++++.|+..+..    +.|.++|+.++..  ...+..|...+.  .|++++++|+...  ++  .|++||+...
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence            333 77777887776653    5799999987643  234455655554  8899999888776  55  7899998743


Q ss_pred             CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEE
Q 004737          651 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL  700 (732)
Q Consensus       651 ~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~~~~~  700 (732)
                          ....+.. ....+..+.+++++..++....+    +.|+.||+.+++...+
T Consensus       361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l  411 (693)
T 3iuj_A          361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLY  411 (693)
T ss_dssp             ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEE
T ss_pred             ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEE
Confidence                2333332 33457777888888877776655    6899999988875543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.43  E-value=1e-10  Score=129.26  Aligned_cols=232  Identities=9%  Similarity=0.035  Sum_probs=163.6

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCcee
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL  528 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~  528 (732)
                      .....|+|+++++++++...++.|++||.+++........... .. ++|+++++.|+++..++  .|.+|+...... .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence            4688999999999777777789999999998877766554333 34 99999999999988866  899999876543 2


Q ss_pred             EEe----ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----EeccCCe--e-EEEEeCCCCEEEEEEc
Q 004737          529 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI  597 (732)
Q Consensus       529 ~~l----~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~----~~~~~~i--~-~v~~sp~g~~ll~~s~  597 (732)
                      ..+    ......+.+++++|++..+++ +..++.|+.||..++.....    .......  . .++|+|+++.++++..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            333    224466789999996556665 66688999999987764332    1111122  3 8999997666666654


Q ss_pred             -CCeEEEEECCCCeEEEEEcCC---------------CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEe
Q 004737          598 -ENYISILDVETQVCRLKLQGH---------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       598 -dg~I~IwDl~t~~~i~~l~~h---------------~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                       ++.|+.||....  +..+.++               -.....|+|+++|.++++-.  ++.|++|++.++   . +..+
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~  360 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV  360 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred             CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence             689999998754  2223222               23578999999999666654  569999997665   2 2233


Q ss_pred             ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          660 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       660 ~~~---------------~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ..+               -.....+++++++..+++-..++.|+.+++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            222               245788999999765555556668887765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=3.9e-12  Score=136.80  Aligned_cols=259  Identities=9%  Similarity=-0.000  Sum_probs=170.4

Q ss_pred             CCeEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCeEEEEe-------ccCCCceEEEEEcCCCCeEEEEeC-----CCeE
Q 004737          451 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV  516 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l-------~~h~~~V~~l~fspdg~~Lasgs~-----Dg~I  516 (732)
                      ..+..++++++|+++++..  .++.++||.+.+++.. .+       ..|-..+..++|+++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6799999999999988864  2343556655455533 22       134567999999999876665443     5799


Q ss_pred             EEEecCCCCceeEEeec------CCcceEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCeeeeEEeccCCee--EEEE
Q 004737          517 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGAT--QMRF  585 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~------h~~~V~sl~fspdg~~llaSgs---~Dg~I~iWDl~t~~~i~~~~~~~~i~--~v~~  585 (732)
                      .+||+.+++. ++.+..      +...+..+++++++..++++..   .++.|.+||+.+++..+.+..+....  ...+
T Consensus        96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999987663 333332      2245689999987666666665   67899999999888766554311110  1334


Q ss_pred             eCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEECC---CCCC--ce---e
Q 004737          586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIG---SGSK--GE---C  655 (732)
Q Consensus       586 sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg-~I~IWDl~---t~~~--~~---~  655 (732)
                      .+++..+.+...++.+..|.              ..+..|+|+|++++|+.+. ++ .|..++..   .+..  ..   .
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK  240 (343)
T ss_dssp             EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred             eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence            44555555566666665442              2468899999999888887 44 56555532   1100  00   0


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc--CCCCeeEEEEeCCCCEEEEEECCC
Q 004737          656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       656 i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~--h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      +.. ..+......++++++|..+++...++.|.+||..+++...+..  +...+.+++|.+++.++++.+..+
T Consensus       241 ~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          241 IER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             CEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             eEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            111 1223345678999999877777778899999986676553332  345789999999988887776443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.42  E-value=4e-10  Score=120.18  Aligned_cols=221  Identities=15%  Similarity=0.087  Sum_probs=153.6

Q ss_pred             eEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737          453 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       453 V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      ..+++|++++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||..++..  ..+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TLH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EEE
Confidence            56789999754 55666678899999998876543 32 34679999999999877754 44 599999987663  222


Q ss_pred             ecC-----CcceEEEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCe
Q 004737          532 TGH-----STTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY  600 (732)
Q Consensus       532 ~~h-----~~~V~sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~  600 (732)
                      ...     ...+.+++++|+|..++.+...     .+.|+.++  +++.............++|+++++.++++.. ++.
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            211     2358899999998644432221     24566666  4655443333345678999999988776654 689


Q ss_pred             EEEEECC--CC-e-----EEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE
Q 004737          601 ISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF  671 (732)
Q Consensus       601 I~IwDl~--t~-~-----~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f  671 (732)
                      |.+||+.  ++ .     ....+......+..++++++|.++++.. ++.|.+||. ++   ..+..+......+.+++|
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~af  278 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAF  278 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEEE
Confidence            9999986  55 2     2333433445678999999998877766 678999998 34   455556656667999999


Q ss_pred             e-CCCCEEEEEEcCC
Q 004737          672 H-PTFPSLLVIGCYE  685 (732)
Q Consensus       672 s-pdg~~L~sgs~dg  685 (732)
                      + +++..|++++..+
T Consensus       279 ~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          279 IGPDASRLLVTSARE  293 (326)
T ss_dssp             ESTTSCEEEEEEBCT
T ss_pred             ecCCCCEEEEEecCC
Confidence            8 8888787766544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.41  E-value=3.1e-11  Score=133.67  Aligned_cols=260  Identities=13%  Similarity=0.145  Sum_probs=181.6

Q ss_pred             ceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccC-----
Q 004737          427 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-----  491 (732)
Q Consensus       427 ~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h-----  491 (732)
                      ..+.+.|..++.....+..   -..+  .++++|||++|+++.          .++.|.++|..+++.+.++.-.     
T Consensus        99 ~~VsVID~~t~~vv~~I~v---G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~  173 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDG---GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF  173 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred             CeEEEEECCCCEEEEEEEC---CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence            4566677777765544443   3334  799999999888775          3678999999999998887532     


Q ss_pred             --CCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          492 --TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       492 --~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                        ......++|+|||++|+++..  ++.|.+.|+.+.+. +..+.-..    +....|++...+++.+.||.+.+.+..+
T Consensus       174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~  248 (426)
T 3c75_H          174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFAD  248 (426)
T ss_dssp             CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred             ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence              123567899999999999875  57999999998764 44444211    1344566656666777788888888866


Q ss_pred             CeeeeE----EeccC-C-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--EEcC----------CCCCEEEEEEeC
Q 004737          568 GSCAGV----FKCQS-G-ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNT  629 (732)
Q Consensus       568 ~~~i~~----~~~~~-~-i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~--~l~~----------h~~~V~sla~sp  629 (732)
                      ++....    +.... . ...+.|.+++..++.....+.|.++|+.......  .+.-          .......+++++
T Consensus       249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~  328 (426)
T 3c75_H          249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR  328 (426)
T ss_dssp             TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred             CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence            655432    11111 1 1235678999998888888999999997654321  1110          011122378999


Q ss_pred             CCCEEEEEe-----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCe
Q 004737          630 SGEYLASVS-----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENK  696 (732)
Q Consensus       630 dg~~Lasgs-----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~-~L~sgs-~dg~I~IwDl~t~~  696 (732)
                      ++..+++..           ++.|.++|+.+.   +.+..+.. ......+.|+||++ ++++.. .++.|.++|+.+++
T Consensus       329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             GGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            988777654           247999999988   55555543 23578899999999 888888 48899999999999


Q ss_pred             EEEE
Q 004737          697 TLTL  700 (732)
Q Consensus       697 ~~~~  700 (732)
                      .+..
T Consensus       405 vv~t  408 (426)
T 3c75_H          405 ELRS  408 (426)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8843

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.39  E-value=9e-11  Score=123.65  Aligned_cols=233  Identities=11%  Similarity=0.120  Sum_probs=160.2

Q ss_pred             ecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          446 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      +..+........|+++|+ ++++...++.|..|+. +++ ...+..+...+..++|+++|+++++...++.|.+|+.+ +
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g  116 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G  116 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence            334455677899999998 5666667899999998 444 34455566779999999999977666566899999986 4


Q ss_pred             CceeEEeecC-----CcceEEEEEcCCCCcEEEE----EeC-------------CCcEEEEECCCCeeeeEEeccCCeeE
Q 004737          525 DYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGATQ  582 (732)
Q Consensus       525 ~~~~~~l~~h-----~~~V~sl~fspdg~~llaS----gs~-------------Dg~I~iWDl~t~~~i~~~~~~~~i~~  582 (732)
                      ..  ..+..+     ...+..+++.++|. ++++    +..             .+.|+.||..+++..... .......
T Consensus       117 ~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g  192 (305)
T 3dr2_A          117 QA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG  192 (305)
T ss_dssp             CE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred             CE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence            42  222211     13467899999975 4444    221             256888888777655444 4455778


Q ss_pred             EEEeCCCCEEEEEEcC------CeEEEEECCCCeEE--EEE-cCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCc
Q 004737          583 MRFQPRLGRILAAAIE------NYISILDVETQVCR--LKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG  653 (732)
Q Consensus       583 v~~sp~g~~ll~~s~d------g~I~IwDl~t~~~i--~~l-~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~  653 (732)
                      ++|+|+++.++++...      +.|.+||+......  ..+ .........++++++|+++++. .+.|.+|+.. +   
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g---  267 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G---  267 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---
Confidence            9999999988888775      78999998765311  111 1123445678999999955544 4459999984 3   


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      +.+..+.... .+..++|.++++.|++++.+ .|+.+++
T Consensus       268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~-~l~~~~~  304 (305)
T 3dr2_A          268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGP-CLWMLPL  304 (305)
T ss_dssp             CEEEEEECSS-CCCEEEECTTSCEEEEEETT-EEEEEEC
T ss_pred             CEEEEEECCC-ceeEEEEeCCCCEEEEEcCC-eEEEEEC
Confidence            4455554444 58899999999988888875 4554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.38  E-value=5.8e-10  Score=118.92  Aligned_cols=221  Identities=9%  Similarity=0.019  Sum_probs=150.9

Q ss_pred             ceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 004737          494 WITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  572 (732)
Q Consensus       494 ~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~  572 (732)
                      ....++|+|++. ++++...++.|.+||..++..  ..+. ....+.+++|++++. +++++ .+ .|.+||..+++...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~-~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS-DD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE-TT-EEEEEETTTCCEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE-CC-CEEEEECCCCcEEE
Confidence            456789999754 556666788999999987543  3332 346799999999975 44343 33 49999998887654


Q ss_pred             EEecc-----CCeeEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C
Q 004737          573 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D  639 (732)
Q Consensus       573 ~~~~~-----~~i~~v~~sp~g~~ll~~s~------dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D  639 (732)
                      .....     ..+..+++++++..+++...      .+.|+.+|  +++... +..+......++|+|+++.|+.+.  +
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            33321     23778999999886655442      25677777  454433 222334678999999999776665  6


Q ss_pred             CeEEEEECC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEe
Q 004737          640 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS  713 (732)
Q Consensus       640 g~I~IWDl~--t~-~~--~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~s  713 (732)
                      +.|.+||+.  ++ ..  ...+..+.........++++++|.++++...++.|.+||. +++.+ .+..+...+++++|+
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence            799999986  44 21  1223333333456788999999986666666789999998 45554 555666679999998


Q ss_pred             -CCCCEEEEEEC
Q 004737          714 -TVNGMVASASH  724 (732)
Q Consensus       714 -pdg~~LaSgs~  724 (732)
                       ++++.|+.++.
T Consensus       280 g~d~~~L~vt~~  291 (326)
T 2ghs_A          280 GPDASRLLVTSA  291 (326)
T ss_dssp             STTSCEEEEEEB
T ss_pred             cCCCCEEEEEec
Confidence             88876655543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=8.7e-11  Score=123.76  Aligned_cols=235  Identities=6%  Similarity=0.001  Sum_probs=159.2

Q ss_pred             EEEeccCCCceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004737          485 KSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  563 (732)
Q Consensus       485 ~~~l~~h~~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iW  563 (732)
                      +..+.........+.|+++++ ++++...++.|..|+.. +.  ...+..+...+..++++++|. ++++...++.|.+|
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRS  112 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEE
Confidence            334444556778999999998 56666678999999984 33  345555667789999999975 55455556789999


Q ss_pred             ECCCCeeeeEEec-----cCCeeEEEEeCCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEcCCCCC
Q 004737          564 SINNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQ  621 (732)
Q Consensus       564 Dl~t~~~i~~~~~-----~~~i~~v~~sp~g~~ll~----~s~-------------dg~I~IwDl~t~~~i~~l~~h~~~  621 (732)
                      +.. ++.......     ...+..+++.++|..+++    +..             .+.|+.||..+++.....  ....
T Consensus       113 ~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          113 DAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             CTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             CCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence            986 554332221     123667999999887765    221             256888888766544333  3456


Q ss_pred             EEEEEEeCCCCEEEEEe-C------CeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          622 VHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       622 V~sla~spdg~~Lasgs-D------g~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      ...++|+|+++.|+.+. .      +.|.+|++..... .....+ .........++++++|+ |++++. +.|.+|+..
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~  266 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-HDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSD  266 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-EEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTT
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-cCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCC
Confidence            78999999999877766 4      6899999875421 111111 11233456789999998 555554 459999985


Q ss_pred             CCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          694 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       694 t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      ......+..+. .+.+++|+++++.|+.++.++..++
T Consensus       267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            44333444444 6899999999998888888776554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.37  E-value=1.3e-11  Score=134.22  Aligned_cols=266  Identities=12%  Similarity=0.066  Sum_probs=178.5

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccC------
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH------  491 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h------  491 (732)
                      .+.+.|..++.....   +.....+  .+.|+||+++++++.          .++.|.+||+.+++.+.++..+      
T Consensus        47 ~vsvID~~t~~v~~~---i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~  121 (368)
T 1mda_H           47 ENWVSCAGCGVTLGH---SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEEEEE---EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred             eEEEEECCCCeEEEE---EeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence            445566666654443   4333344  799999999988886          3689999999999999998643      


Q ss_pred             -CCceEEEEEcCCCCeEEEEeC--CCeEEE--EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          492 -TQWITDVRFSPSLSRLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       492 -~~~V~~l~fspdg~~Lasgs~--Dg~I~I--WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                       ......++|+|||++++++..  +..|.+  +|+.+    +..+.- .+   |+.+.|++...+++.+.|+.+.+.|+.
T Consensus       122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~---~~~~~p~g~~~~~~~~~dg~~~~vd~~  193 (368)
T 1mda_H          122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-AS---CFHIHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SS---CCCCEEEETTEEECCCCTTSCEEEECC
T ss_pred             cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CC---ceEEccCCCeEEEEEcCCCCEEEEECc
Confidence             124568999999999999875  467888  99876    233321 11   122446666777777788999889988


Q ss_pred             C-----Ceeee----EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCC----------CCCEEEE
Q 004737          567 N-----GSCAG----VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSV  625 (732)
Q Consensus       567 t-----~~~i~----~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h----------~~~V~sl  625 (732)
                      +     ++...    .+.......  . .++++.++..+. +.|.+.|+.+.  +.+..+.-.          ......+
T Consensus       194 ~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v  269 (368)
T 1mda_H          194 AAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV  269 (368)
T ss_dssp             SSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred             cccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceee
Confidence            6     44331    111111112  3 677788777777 99999999754  233222110          0111226


Q ss_pred             EEeCCCCEEEEEe--C--------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 004737          626 CWNTSGEYLASVS--D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT  693 (732)
Q Consensus       626 a~spdg~~Lasgs--D--------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs--~dg~I~IwDl~  693 (732)
                      +|+++++.++++.  .        +.+.+||+.+.   +.+..+... .....++|+||+++++++.  .++.|.++|+.
T Consensus       270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             EEcCCCCEEEEEeccccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            8999998777643  2        35679999987   455554432 2688999999998555544  48899999999


Q ss_pred             CCeEEEEccCCCCeeEEEEeC
Q 004737          694 ENKTLTLSAHDKLVSSLAAST  714 (732)
Q Consensus       694 t~~~~~~~~h~~~V~sla~sp  714 (732)
                      +++.+....-....+.+++.+
T Consensus       346 t~kvv~~I~vg~~P~~i~~~~  366 (368)
T 1mda_H          346 SDQDQSSVELDKGPESLSVQN  366 (368)
T ss_dssp             SCEEEEECCCCSCCCEEECCC
T ss_pred             CCcEEEEEECCCCCCEEEeec
Confidence            999995555555566777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1e-11  Score=135.76  Aligned_cols=172  Identities=14%  Similarity=0.127  Sum_probs=138.3

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-----------EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      .++.+++++...++++|+.+ .++||++++..           ..... .+.. |+.|+|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            58999999999999999987 56669865433           11222 3566 999999  89999999 889999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      +.+.. .......|...+.++.+.+.  . ++++..||.|.+||+.++....   ....+.+++|+|+|  ++++..||.
T Consensus       113 v~sl~-~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~  183 (388)
T 1xip_A          113 LEELS-EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS  183 (388)
T ss_dssp             SSSTT-CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred             chhhh-ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence            98765 35556677888888887754  3 6678889999999999877654   33689999999998  788999999


Q ss_pred             EEEEECCCCeE--EEEE------c---CCCCCEEEEEEeCCCCEEEEEe
Q 004737          601 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       601 I~IwDl~t~~~--i~~l------~---~h~~~V~sla~spdg~~Lasgs  638 (732)
                      |++|+.....+  ..++      .   +|...|.+|+|.+++.++++-.
T Consensus       184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            99999988875  5566      3   3778999999999999988754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.31  E-value=2.2e-09  Score=116.12  Aligned_cols=253  Identities=13%  Similarity=0.068  Sum_probs=165.4

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcce--
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--  538 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V--  538 (732)
                      ++..+++++.++.|..+|.++++.+..+.............  +..+++++.++.|..+|..+++. +..+.......  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence            45578888899999999999999887665443222222222  45788888999999999998874 33332221110  


Q ss_pred             ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-----------e-eEEEEeCCCCEEEEEEcCCeEEE
Q 004737          539 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----------A-TQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       539 ---~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-----------i-~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                         ...... +  ..++.+..++.|..+|..+++.+........           + ....+  .++.+++++.++.|..
T Consensus       179 ~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          179 RGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTA  253 (376)
T ss_dssp             CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEE
T ss_pred             cCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEE
Confidence               122222 2  2455677789999999999998877664321           1 11111  2477888888999999


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEE
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sg  681 (732)
                      +|.++++.+.....  .....+...  +..|+.++ ++.|..+|..++   +.+..... ....+....+  .+..|+++
T Consensus       254 ~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~  324 (376)
T 3q7m_A          254 LDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVG  324 (376)
T ss_dssp             EETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEE
T ss_pred             EECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEE
Confidence            99999988876652  334455443  45555566 889999999988   44444331 1222222333  24578899


Q ss_pred             EcCCeEEEEECCCCeEE-EEccCCCCee-EEEEeCCCCEEEEEECCCeEEEeC
Q 004737          682 GCYETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.++.|++||..+++.+ ........+. .....  +..|+.++.||.|..||
T Consensus       325 ~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          325 DSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence            99999999999999987 3333233332 22332  56788899999999885

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.24  E-value=1.8e-10  Score=125.31  Aligned_cols=245  Identities=10%  Similarity=-0.005  Sum_probs=164.1

Q ss_pred             cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEEEEecCCCCceeEEeecC-------C
Q 004737          473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S  535 (732)
Q Consensus       473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~IWDl~s~~~~~~~l~~h-------~  535 (732)
                      .|.|+|..+++.+.++.....+  .+.|+||+++++++.          .++.|.+||+.+.+. +..+...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence            8889999999999999766666  799999999999886          368999999999774 5555422       1


Q ss_pred             cceEEEEEcCCCCcEEEEEeC-CCcEEE--EECCCCeeeeEEeccCCeeEEEEeCCC-CEEEEEEcCCeEEEEECCC---
Q 004737          536 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET---  608 (732)
Q Consensus       536 ~~V~sl~fspdg~~llaSgs~-Dg~I~i--WDl~t~~~i~~~~~~~~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t---  608 (732)
                      .....+.|+|||+.++++... +..|.+  +|+.+   +..+...+.   +.+.|++ ..+++.+.|+.+.+.|+++   
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            245789999999888866543 467888  99876   445543222   2233443 3455566788888899887   


Q ss_pred             --CeEEEE----EcCCCCCEEEEEEeCCCC-EEEEEeCCeEEEEECCCCCCceeEEEeecC-------C---CceEEEEE
Q 004737          609 --QVCRLK----LQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVF  671 (732)
Q Consensus       609 --~~~i~~----l~~h~~~V~sla~spdg~-~LasgsDg~I~IWDl~t~~~~~~i~~~~~~-------~---~~I~sl~f  671 (732)
                        ++....    +.....+.   . .+++. ++++.. +.|.+.|+..... ..+..+...       .   .....++|
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEE
Confidence              432211    11122333   3 44444 444455 8899999865321 222222110       0   11122689


Q ss_pred             eCCCCEEEEEEc-C--------CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-EEEEEE-CCCeEEEeC
Q 004737          672 HPTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  732 (732)
Q Consensus       672 spdg~~L~sgs~-d--------g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWD  732 (732)
                      +|++++++++.. .        +.+.+||+.+.+.+....-.....+|+|++|++ .+++.. .++.|.|+|
T Consensus       272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            999999888754 2        367799999999884333333689999999998 566666 599999986

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.23  E-value=1.2e-09  Score=128.42  Aligned_cols=263  Identities=13%  Similarity=0.101  Sum_probs=179.7

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc-----------eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----------V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      +..|++++.++.|..+|..+|+.+-.+......           ...+++  ++..|++++.|+.|..+|..+++. +..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~-~W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE-VWH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence            456777777899999999999999877543210           112333  456888889999999999999885 333


Q ss_pred             eecC-C----cceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccCCe-------------------
Q 004737          531 FTGH-S----TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA-------------------  580 (732)
Q Consensus       531 l~~h-~----~~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~~i-------------------  580 (732)
                      +..+ .    ..+. ...+.  +..+++.++     .++.|+.||..+++.+..+......                   
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            3332 1    1121 11122  234443332     2689999999999998877642211                   


Q ss_pred             --------------eEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC------
Q 004737          581 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------  619 (732)
Q Consensus       581 --------------~~v~~sp~g~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~------  619 (732)
                                    ..++++++++.+++++.++                   .|..+|.++++.+..+..  |.      
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                          3578899999998887664                   599999999998887664  21      


Q ss_pred             -CCEEEEEEeCCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-----------CCce-----------------
Q 004737          620 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-----------GNKF-----------------  666 (732)
Q Consensus       620 -~~V~sla~spdg---~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-----------~~~I-----------------  666 (732)
                       .....+....+|   .+|+.++ +|.|+++|..+++   .+..+...           ..++                 
T Consensus       312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence             122233344467   5777777 9999999999984   33332211           0111                 


Q ss_pred             -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCe
Q 004737          667 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK  696 (732)
Q Consensus       667 -------~sl~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~t~~  696 (732)
                             ..++|+|+...+++...+                                           +.|..||+.+++
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                   156889998888776432                                           679999999999


Q ss_pred             EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          697 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       697 ~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+-...+...+....+..++.+++.++.||.|++||
T Consensus       469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            884444555566666777888999999999999986

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.23  E-value=9.7e-10  Score=129.52  Aligned_cols=264  Identities=11%  Similarity=0.093  Sum_probs=175.0

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc----------e-EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------V-~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      +..|++++.++.|+.+|..+|+.+-.+..+...          + ..+.+  ++..|++++.|+.|..||..+++...+.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            557777888899999999999999887543221          0 11222  3567888989999999999998854333


Q ss_pred             eec-CCc---ceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccC----------------------
Q 004737          531 FTG-HST---TVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS----------------------  578 (732)
Q Consensus       531 l~~-h~~---~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~----------------------  578 (732)
                      ... +..   .+. +..+. + ..+++.++     .++.|+.||.++|+.+..+....                      
T Consensus       148 ~~~~~~~~~~~~~~sP~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~  225 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVV-N-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD  225 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred             cCcCCCCCCccccCCcEEE-C-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence            222 111   111 11111 2 34443332     36899999999999987775210                      


Q ss_pred             ----------CeeEEEEeCCCCEEEEEEcCCe-------------------EEEEECCCCeEEEEEcC--CC-------C
Q 004737          579 ----------GATQMRFQPRLGRILAAAIENY-------------------ISILDVETQVCRLKLQG--HK-------N  620 (732)
Q Consensus       579 ----------~i~~v~~sp~g~~ll~~s~dg~-------------------I~IwDl~t~~~i~~l~~--h~-------~  620 (732)
                                ....++++++.+.+++++.++.                   |..||.++++.+..+..  |.       .
T Consensus       226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence                      0125788998899998887763                   99999999999887764  21       1


Q ss_pred             CEEEEEEeCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC---------------------------------
Q 004737          621 QVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG---------------------------------  663 (732)
Q Consensus       621 ~V~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~---------------------------------  663 (732)
                      .+.......+|+   +++.++ +|.++++|..+++.   +.......                                 
T Consensus       306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~---l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~  382 (689)
T 1yiq_A          306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL---LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT  382 (689)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES
T ss_pred             CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE---eccccccccccccccCccCCCcccchhhccccCCCCeeEeC
Confidence            222223333564   677777 89999999999843   32111000                                 


Q ss_pred             ------CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEEC
Q 004737          664 ------NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNM  692 (732)
Q Consensus       664 ------~~I~sl~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl  692 (732)
                            .....++|+|+...+++...                                             ++.|+.||+
T Consensus       383 p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~  462 (689)
T 1yiq_A          383 PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDP  462 (689)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEET
T ss_pred             CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEEC
Confidence                  00123688998887777632                                             267999999


Q ss_pred             CCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          693 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       693 ~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+++.+-...+...+..-.+...+.+|++++.||.|++||
T Consensus       463 ~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          463 VKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             TTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence            9999883333334444446667788999999999999996

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.23  E-value=5.6e-10  Score=131.62  Aligned_cols=236  Identities=13%  Similarity=0.105  Sum_probs=157.7

Q ss_pred             cCCCceEEEEEcCCCCeEEEEe-----CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-------
Q 004737          490 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------  557 (732)
Q Consensus       490 ~h~~~V~~l~fspdg~~Lasgs-----~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-------  557 (732)
                      +|...+..++|+|||++||.+.     .+..|+|||+.+++.....+..  .....++|+ |++.++++...+       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence            3556788999999999988543     2357999999988742222221  113578899 988777665542       


Q ss_pred             -----CcEEEEECCCCee--eeEEecc----CCeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCe-EEEEEcCCCCC
Q 004737          558 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ  621 (732)
Q Consensus       558 -----g~I~iWDl~t~~~--i~~~~~~----~~i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~~-~i~~l~~h~~~  621 (732)
                           ..|++|++.+...  ...+...    .....+.|+|++++|++....    ..|+++|+.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                 2499999987643  2233222    236789999999998766542    489999998763 34455556665


Q ss_pred             EEEEEEeCCCCEEEEEe--C---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 004737          622 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT  693 (732)
Q Consensus       622 V~sla~spdg~~Lasgs--D---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~  693 (732)
                      .... |++++..|+..+  +   +.|.+||+.++... ....+..+...+.  .|++++.+|++...++   .|++||+.
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            5555 666666555444  3   47999999876431 1234444555554  8999999888777655   79999998


Q ss_pred             CCeEEEEc-cCCCCeeEEEEeCCCCEEEEEECC----CeEEEeC
Q 004737          694 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK  732 (732)
Q Consensus       694 t~~~~~~~-~h~~~V~sla~spdg~~LaSgs~D----G~I~IWD  732 (732)
                      .+....+. .+...+..+.++++++.|+....+    +.|..||
T Consensus       359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            76655443 345667788888888766655444    6777765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=1e-13  Score=151.22  Aligned_cols=222  Identities=14%  Similarity=0.046  Sum_probs=120.4

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCc-ceE
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM  539 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~-~V~  539 (732)
                      ++..+++++.|+.|+.||..+|+.+..+..  +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence            577999999999999999999999988875  4566666667787888888999999999987764 333332211 111


Q ss_pred             -EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC
Q 004737          540 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH  618 (732)
Q Consensus       540 -sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h  618 (732)
                       +..+. . ...+++++.++.|+.||..+|+.+..+....   ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus        85 ~sp~~~-~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A           85 ASPCRS-S-DGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred             cCceEe-c-CCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence             11111 2 2345577779999999999999887776543   2345668888999999999999999998766554321


Q ss_pred             CCCEEEEEEeCCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEE--EEcCCeEEEEE
Q 004737          619 KNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLV--IGCYETLELWN  691 (732)
Q Consensus       619 ~~~V~sla~spdg---~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~-sl~fspdg~~L~s--gs~dg~I~IwD  691 (732)
                      .  ....++..+.   ..+++++ |+.|+.||..++   +.+..... ..++. ..++++++...+.  ...++.++++|
T Consensus       160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld  233 (369)
T 2hz6_A          160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNY-ASPVVAFYVWQREGLRKVMHINVAVETLRYLT  233 (369)
T ss_dssp             E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEEC-SSCEEEEEECTTSSCEEECCEEEEHHHHHHHH
T ss_pred             c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecC-CCceEEEEEecCCceEeccceeecccceeeee
Confidence            1  1223333321   3344455 999999999988   44444443 33443 3445556642110  01133455666


Q ss_pred             CCCCe
Q 004737          692 MTENK  696 (732)
Q Consensus       692 l~t~~  696 (732)
                      ..+++
T Consensus       234 ~~tG~  238 (369)
T 2hz6_A          234 FMSGE  238 (369)
T ss_dssp             HHHHH
T ss_pred             hhcCC
Confidence            55554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.22  E-value=7.1e-09  Score=112.00  Aligned_cols=254  Identities=9%  Similarity=0.054  Sum_probs=164.2

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccC---------CCceE-EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---------~~~V~-~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      +..|++++.++.|..||.++++.+..+...         ...+. .+..  ++..+++++.++.|..+|..+++.. ..+
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~-W~~  129 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVA-WQT  129 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEE-EEE
Confidence            567888888899999999999988666532         12232 2222  4567888889999999999988753 333


Q ss_pred             ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe------eEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------TQMRFQPRLGRILAAAIENYISILD  605 (732)
Q Consensus       532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i------~~v~~sp~g~~ll~~s~dg~I~IwD  605 (732)
                      ...........+. +  ..++.++.++.|..+|..+++.+..+.....+      ....+.  ++.+++++.++.|..+|
T Consensus       130 ~~~~~~~~~p~~~-~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          130 KVAGEALSRPVVS-D--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             ECSSCCCSCCEEE-T--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred             eCCCceEcCCEEE-C--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence            3222222222222 2  24556777999999999999988877754433      122222  46788888899999999


Q ss_pred             CCCCeEEEEEcCCCCC----EE---EEEEeC--CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737          606 VETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~----V~---sla~sp--dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg  675 (732)
                      ..+++.+.........    +.   .+...|  .+..++.++ ++.|..+|..++   +.+....  ......+..  ++
T Consensus       205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~  277 (376)
T 3q7m_A          205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG  277 (376)
T ss_dssp             TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred             CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence            9999888766532110    00   011111  234566666 889999999887   3443333  223344444  35


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          676 PSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ..+++++.++.|+.||..+++.+ ... .....+......  +..|+.++.+|.|.+||
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence            67888999999999999999887 333 122233333433  56788888899888875

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.21  E-value=3.4e-08  Score=101.53  Aligned_cols=247  Identities=9%  Similarity=0.010  Sum_probs=161.0

Q ss_pred             CEEEEEECCCcEEEEEcCCCeE-----EEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCc
Q 004737          463 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST  536 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~-----~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~  536 (732)
                      .+|+.+.. +.|+.++++....     ...+......+..++|++++..|+.+. .++.|.+++++.... ...+.....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence            45555543 4788888775432     112222234578999999766655554 578999999986542 223322234


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR  612 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i  612 (732)
                      ....+++++++..++++....+.|.++++............ .....++++|+++.++++...   +.|..+++......
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~  159 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence            67899999987778877777889999998754332222222 457889999987888777753   68989988654322


Q ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 004737          613 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL  689 (732)
Q Consensus       613 ~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~I  689 (732)
                      ............+++++++..|+.+.  .+.|.++|+...   ....... .......+++.  +..|+++.. .+.|.+
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence            22222335678999999888777766  679999998753   2222222 22334566654  556666665 469999


Q ss_pred             EECCCCeEE-EEccCC-CCeeEEEEeCCCC
Q 004737          690 WNMTENKTL-TLSAHD-KLVSSLAASTVNG  717 (732)
Q Consensus       690 wDl~t~~~~-~~~~h~-~~V~sla~spdg~  717 (732)
                      +|..+++.+ .+.... .....+++.|++.
T Consensus       234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          234 MDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EeCCCCCceEEEccccccccceeeecCccC
Confidence            999999877 333322 2578888888764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.18  E-value=2e-08  Score=110.57  Aligned_cols=223  Identities=11%  Similarity=0.062  Sum_probs=155.9

Q ss_pred             EEc--CCCCEEEEE-ECCCcEEEEEcCCC----eEEEEec------c-CCCceEEEEEcCCCCeEEEEeCC------CeE
Q 004737          457 HFS--PDGKLLATG-GHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV  516 (732)
Q Consensus       457 afS--pdg~~Lasg-s~Dg~I~VWd~~t~----~~~~~l~------~-h~~~V~~l~fspdg~~Lasgs~D------g~I  516 (732)
                      .++  .++++|++. ..++.|.|+|+.+.    +..++++      . ....-..+...|+| +++++..+      +.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  788887654 56789999999765    6777773      1 11245667888999 77776655      789


Q ss_pred             EEEecCCCCceeEEeecC--C-cceEEEEEcCCCCcEEEEEe-------------------CCCcEEEEECCCCeeeeEE
Q 004737          517 RVWDTENPDYSLRTFTGH--S-TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF  574 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h--~-~~V~sl~fspdg~~llaSgs-------------------~Dg~I~iWDl~t~~~i~~~  574 (732)
                      .++|..+.+. +..+...  . ..-..+-|+|+++.++ +..                   .+..|.+||+.+++.+..+
T Consensus       167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence            9999998764 5555422  1 2245688899976444 553                   3689999999999888888


Q ss_pred             ecc---CCeeEEEE--eCCCCEEEEEEc------CCeEEEEECCCCeE--EEE--EcCC----------------CCCEE
Q 004737          575 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH  623 (732)
Q Consensus       575 ~~~---~~i~~v~~--sp~g~~ll~~s~------dg~I~IwDl~t~~~--i~~--l~~h----------------~~~V~  623 (732)
                      ...   .....+.|  +|+++++++++.      ++.|.+|..+.+..  ...  +...                .....
T Consensus       245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            764   23455656  999999888775      56887776654421  111  1110                23467


Q ss_pred             EEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 004737          624 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       624 sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~--------------~I~sl~fspdg~~L~sgs  682 (732)
                      .|.+++||++|+++.  .+.|.+||+......+.+..+...+.              .-..+.++|||++|+++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            899999999999988  77999999975544455655544311              357889999999999998

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.18  E-value=1.1e-09  Score=115.19  Aligned_cols=259  Identities=10%  Similarity=0.003  Sum_probs=170.2

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      ..+.++.+.+++. |..++.+  |..||. +++.+..+...........+.  +..|+.++.++.|..+|.. +.. ...
T Consensus        60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~  131 (330)
T 3hxj_A           60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWR  131 (330)
T ss_dssp             EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEE
T ss_pred             CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEE
Confidence            3457777777775 4445444  888885 555443333222222333333  5567888889999999988 553 444


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQ  609 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~  609 (732)
                      +..+...+.++...+++. ++ .++.++.|..||.. ++....+... ..+.++.+.+++. +++++  +.|..|| .++
T Consensus       132 ~~~~~~~~~~~~~~~~g~-l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          132 FKTKKAIYATPIVSEDGT-IY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDG  204 (330)
T ss_dssp             EECSSCCCSCCEECTTSC-EE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTS
T ss_pred             EcCCCceeeeeEEcCCCE-EE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCC
Confidence            444555566777776653 33 56678899999999 7777666543 3356667766765 44444  8999999 777


Q ss_pred             eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          610 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       610 ~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                      +.+..+......+.+++..+++.+++...++.|..+|. ++   ..+..+......+..+.+.+++. |++++.++.|+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~  279 (330)
T 3hxj_A          205 TEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYA  279 (330)
T ss_dssp             CEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEE
T ss_pred             cEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEE
Confidence            77777766667788889988887766655788888874 33   33344443333344556665664 788888889999


Q ss_pred             EECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          690 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       690 wDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      +|. +++.+ .+......+.++....++. |+.++.+|.+++.
T Consensus       280 ~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          280 INP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             ECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             ECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            996 56655 4444556677888777775 5568889988764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=4.8e-10  Score=122.50  Aligned_cols=170  Identities=11%  Similarity=0.058  Sum_probs=130.3

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-----------eeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  605 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~-----------~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD  605 (732)
                      .+..+++++.. .++++|+.+ .+++|++....           ......... +..++|  ++..++++ .++.|++||
T Consensus        39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            68999999986 456577766 46679864322           223445556 999999  88888888 889999999


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      +.+.........|...+.++.+.+..  ++++. ||.|.+||+.++..   ..    +...|.+++|+|+|  ++++..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~---~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKST---KQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCE---EE----EEESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcc---cc----ccCCceEEEEcCCc--eEEEEcC
Confidence            98776555666677889988877653  55555 99999999997632   22    23579999999999  7889999


Q ss_pred             CeEEEEECCCCeE--E-EE------c---cCCCCeeEEEEeCCCCEEEEEE
Q 004737          685 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       685 g~I~IwDl~t~~~--~-~~------~---~h~~~V~sla~spdg~~LaSgs  723 (732)
                      +.+++|+...+..  . ++      .   +|...|.+|.|.+++.++++-.
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999999888774  3 44      2   3788999999999998887643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=3.3e-09  Score=124.74  Aligned_cols=254  Identities=10%  Similarity=0.047  Sum_probs=169.5

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccC-C----CceEE-EEEcCCCCeEEEEeC------CCeEEEEecCCCCcee
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL  528 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~----~~V~~-l~fspdg~~Lasgs~------Dg~I~IWDl~s~~~~~  528 (732)
                      ++..|++++.|+.|..+|..+++.+..+..+ .    ..+.. ...  .+..+++++.      ++.|+.||..+++...
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            4568888899999999999999999887654 1    11211 111  2345555543      7999999999988543


Q ss_pred             EEeecCC-------------------------------cceEEEEEcCCCCcEEEEEeCCC-------------------
Q 004737          529 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------  558 (732)
Q Consensus       529 ~~l~~h~-------------------------------~~V~sl~fspdg~~llaSgs~Dg-------------------  558 (732)
                      +......                               .....++++|++..++ .+..++                   
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence            3222110                               1113577888865444 554443                   


Q ss_pred             cEEEEECCCCeeeeEEeccC----------CeeEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 004737          559 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHK------  619 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~~----------~i~~v~~sp~g---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------  619 (732)
                      .|..+|.++++.+..+....          ....+....+|   ..+++++.+|.|+++|.++++.+..+....      
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            59999999999998876421          12233333466   568888899999999999999887665221      


Q ss_pred             -----CCE------------------------EEEEEeCCCCEEEEEe-C------------------------------
Q 004737          620 -----NQV------------------------HSVCWNTSGEYLASVS-D------------------------------  639 (732)
Q Consensus       620 -----~~V------------------------~sla~spdg~~Lasgs-D------------------------------  639 (732)
                           .++                        ..++|+|++.++++.. +                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                 111                        1468899888877753 2                              


Q ss_pred             -------------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCC
Q 004737          640 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD  704 (732)
Q Consensus       640 -------------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~  704 (732)
                                   +.|..||+.++   +.+..+.. ..++....+...+..+++++.++.|++||.++++.+ .+. .+.
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  519 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence                         67999999988   44444432 334455567778888999999999999999999988 443 333


Q ss_pred             CCeeEEEEeCCCCEEEE
Q 004737          705 KLVSSLAASTVNGMVAS  721 (732)
Q Consensus       705 ~~V~sla~spdg~~LaS  721 (732)
                      ....-+.|..+|+.++.
T Consensus       520 ~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cccCCEEEEeCCEEEEE
Confidence            33445667778874443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.15  E-value=8.7e-09  Score=121.37  Aligned_cols=257  Identities=11%  Similarity=0.060  Sum_probs=165.7

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccC--CCceEEEEEcC---CCCeEEEEe------CCCeEEEEecCCCCceeE
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~V~~l~fsp---dg~~Lasgs------~Dg~I~IWDl~s~~~~~~  529 (732)
                      ++..|++++.|+.|+.+|.++|+.+..+...  ......+..+|   ++ .+++++      .++.|+.||..+++...+
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            3568888899999999999999998776532  11111111122   44 444443      378999999999885433


Q ss_pred             EeecC------------------------------CcceEEEEEcCCCCcEEEEEeCCC-------------------cE
Q 004737          530 TFTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EI  560 (732)
Q Consensus       530 ~l~~h------------------------------~~~V~sl~fspdg~~llaSgs~Dg-------------------~I  560 (732)
                      .....                              ......++++|+.. +++.+..++                   .|
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v  277 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSI  277 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence            32110                              01112577888754 555666565                   39


Q ss_pred             EEEECCCCeeeeEEeccC----------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCE----
Q 004737          561 RYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQV----  622 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~----------~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~V----  622 (732)
                      ..||.++++.+..+....          ......+..++.   .+++++.+|.|+++|.++++.+....... ...    
T Consensus       278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~  357 (689)
T 1yiq_A          278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD  357 (689)
T ss_dssp             EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred             EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence            999999999998876421          112222223443   67788889999999999998875433111 000    


Q ss_pred             ----------------------------------EEEEEeCCCCEEEEEe------------------------------
Q 004737          623 ----------------------------------HSVCWNTSGEYLASVS------------------------------  638 (732)
Q Consensus       623 ----------------------------------~sla~spdg~~Lasgs------------------------------  638 (732)
                                                        ..++|+|+..++++..                              
T Consensus       358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  437 (689)
T 1yiq_A          358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG  437 (689)
T ss_dssp             TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred             ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence                                              1268888887777652                              


Q ss_pred             ----------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc
Q 004737          639 ----------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS  701 (732)
Q Consensus       639 ----------------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~  701 (732)
                                      +|.|+.||+.++   +.+..+..+ .++....+...+..+++++.|+.|+.||.++++.+ .+.
T Consensus       438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             CCCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence                            267999999988   555444433 23333466667888999999999999999999998 444


Q ss_pred             c-CCCCeeEEEEeCCCC-EEEEEE
Q 004737          702 A-HDKLVSSLAASTVNG-MVASAS  723 (732)
Q Consensus       702 ~-h~~~V~sla~spdg~-~LaSgs  723 (732)
                      . +.....-+.|..+|+ |+++.+
T Consensus       514 ~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          514 AASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             CSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCCCcccCceEEEECCEEEEEEEe
Confidence            3 333334567778887 444443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.11  E-value=1.9e-09  Score=115.70  Aligned_cols=220  Identities=9%  Similarity=0.031  Sum_probs=151.1

Q ss_pred             CceEEEEEcCCCCeEEEEe--CCCeEEEEecCCCCceeEEe-------ecCCcceEEEEEcCCCCcEEEEEeC-----CC
Q 004737          493 QWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS  558 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l-------~~h~~~V~sl~fspdg~~llaSgs~-----Dg  558 (732)
                      ..+..|+++++|+++++..  .++.++||.+.++.  +..+       ..|-..+..++|++++. ++++-..     +.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence            6789999999999988864  23436667665332  3322       12446799999999864 5444322     57


Q ss_pred             cEEEEECCCCeeeeEEecc-------CCeeEEEEeCCCCEEEEEE----cCCeEEEEECCCCeEEEEEcCCCCCEE-EEE
Q 004737          559 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC  626 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~-------~~i~~v~~sp~g~~ll~~s----~dg~I~IwDl~t~~~i~~l~~h~~~V~-sla  626 (732)
                      .|.+||+.+++.+..+...       ..+..++++++++.++++.    .++.|.+||+.+++....+.+|..... ...
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            8999999999987777643       2358899998767766655    468999999998887776655432111 133


Q ss_pred             EeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCe-----
Q 004737          627 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK-----  696 (732)
Q Consensus       627 ~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-~I~IwDl~---t~~-----  696 (732)
                      +..+|..+.+.+ ++.++.|.                 ..+..++|+|+++.|+++...+ .|+.++..   .+.     
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence            445666666655 77766553                 1356799999999999888776 66666542   111     


Q ss_pred             ---EEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          697 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       697 ---~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                         .+...++......+++++++.++++...++.|.+||
T Consensus       237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence               012224455677899999999888888889999996

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.08  E-value=1.6e-08  Score=114.77  Aligned_cols=234  Identities=12%  Similarity=0.124  Sum_probs=168.0

Q ss_pred             CCCEEEEEEC-CCcEEEEEcCCCeEEEEeccC-CCceEEEEE-c-CCCCeEEEEe------------------CCCeEEE
Q 004737          461 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV  518 (732)
Q Consensus       461 dg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~f-s-pdg~~Lasgs------------------~Dg~I~I  518 (732)
                      ||++|++... ++.|.+.|+.+.++...+.-. ...+..+++ . |+++++++++                  .++.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8888877665 467999999999988855422 245888898 5 8999998885                  2468999


Q ss_pred             EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC-------------------------------------CcEE
Q 004737          519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR  561 (732)
Q Consensus       519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D-------------------------------------g~I~  561 (732)
                      +|.++.+.......+-  ....++++|+|+.+++++...                                     +.|.
T Consensus       180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999866433333322  456788999988888777443                                     2477


Q ss_pred             EEECCC--Cee-eeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEcCCCCCEEEE
Q 004737          562 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV  625 (732)
Q Consensus       562 iWDl~t--~~~-i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~------------~i~~l~~h~~~V~sl  625 (732)
                      +.|..+  ++. +..+.......++.++|||+++++++. +..|.+||+.+.+            .+..+. -......+
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~  336 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT  336 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence            888887  555 566766677889999999999888775 6899999999653            334443 33467889


Q ss_pred             EEeCCCCEEEEEe--CCeEEEEECCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--eE--
Q 004737          626 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL--  687 (732)
Q Consensus       626 a~spdg~~Lasgs--Dg~I~IWDl~t~-------~~~~~i~~~~~~~~~I~-----sl~fspdg~~L~sgs~dg--~I--  687 (732)
                      +|+++| ++++..  |+.|.+||+...       +....+..+..+..+-.     .+.++|||++|++...-.  .+  
T Consensus       337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            999999 666655  999999999762       11356667766654332     124589999999887532  34  


Q ss_pred             ---------EEEECCCCeEE
Q 004737          688 ---------ELWNMTENKTL  698 (732)
Q Consensus       688 ---------~IwDl~t~~~~  698 (732)
                               .++|+..++..
T Consensus       416 ~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          416 VGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             CCSSCCEEEEEEECSSSSCE
T ss_pred             CCCCCCCcceEEEcCCCcEE
Confidence                     88999766533

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.07  E-value=5.6e-09  Score=118.59  Aligned_cols=257  Identities=9%  Similarity=0.013  Sum_probs=176.6

Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEecc---------------------------------CC------CceEEEEEcC---
Q 004737          465 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP---  502 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~~t~~~~~~l~~---------------------------------h~------~~V~~l~fsp---  502 (732)
                      |.+|+..|.|+|+-+.+++.+..+.-                                 +.      +....+..|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            56778888888888888777766420                                 01      1122244444   


Q ss_pred             --CCCeEEEEeC-CCeEEEEecCCCCceeEEee-cCCcceEEEEE-c-CCCCcEEEEE-----------------eCCCc
Q 004737          503 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE  559 (732)
Q Consensus       503 --dg~~Lasgs~-Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~f-s-pdg~~llaSg-----------------s~Dg~  559 (732)
                        ||++++.... +..|.+.|+++.+. ...+. .....+..+++ . |+++++++++                 ..++.
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence              7888777665 55799999998663 44222 12345778887 4 8988887664                 33568


Q ss_pred             EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC--------------------------------------eE
Q 004737          560 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI  601 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg--------------------------------------~I  601 (732)
                      |.++|..+.+.+..+...+....++++|+++++++++.+.                                      .|
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            9999999999999888766778899999999999988653                                      36


Q ss_pred             EEEECCC--CeE-EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC--------CceeEEEeecCCCceEE
Q 004737          602 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS  668 (732)
Q Consensus       602 ~IwDl~t--~~~-i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~--------~~~~i~~~~~~~~~I~s  668 (732)
                      .|.|.++  ++. +..+.. .....++.++|||+++++++  +++|.++|+.+..        ....+......+.....
T Consensus       257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h  335 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  335 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred             EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence            6777776  433 333432 23457899999999999988  7799999998541        01123223334566889


Q ss_pred             EEEeCCCCEEEEE-EcCCeEEEEECCC----------CeEE-EEccCCCCe-----eEEEEeCCCCEEEEEEC
Q 004737          669 CVFHPTFPSLLVI-GCYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH  724 (732)
Q Consensus       669 l~fspdg~~L~sg-s~dg~I~IwDl~t----------~~~~-~~~~h~~~V-----~sla~spdg~~LaSgs~  724 (732)
                      ++|+++| ++++. .-++.|.+||+..          ...+ ++..|..+-     .++.++|||++|+++..
T Consensus       336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            9999999 55544 4577999999976          4444 554554322     22345799999998863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.07  E-value=1.2e-09  Score=115.08  Aligned_cols=256  Identities=10%  Similarity=0.052  Sum_probs=166.8

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCC
Q 004737          456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  535 (732)
Q Consensus       456 lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~  535 (732)
                      +.+..++ .|.+++.++.|..|| .+++....+..+...+.++.+.+++. |+.++.+  |..||. +++. +..+....
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~   97 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK   97 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence            4454555 456667788999999 88887766655555567777777765 4445444  888886 3332 22222222


Q ss_pred             cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC-eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 004737          536 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  614 (732)
Q Consensus       536 ~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~  614 (732)
                      .......+. + . .++.++.++.|..+|.. ++....+..... +.++...+++. +++++.++.|..||.. ++.+..
T Consensus        98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A           98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred             CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence            222333333 3 3 34467778899999998 777666654333 45566666644 7778888999999999 877777


Q ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          615 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       615 l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      +......+.++.+.+++.++++.  +.|..|| .++   ..+.........+.++.+.+++. |++++.++.|..+|...
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG  244 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred             EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence            66556667788888888866655  8899999 555   44444444556678888888875 77788888899998544


Q ss_pred             CeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          695 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       695 ~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .....+......+..+.+.+++ .|+.++.+|.|..+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence            3333444444445556665555 566677787777765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.02  E-value=1.5e-07  Score=103.56  Aligned_cols=222  Identities=9%  Similarity=-0.003  Sum_probs=148.7

Q ss_pred             EEc--CCCCeEEEE-eCCCeEEEEecCCCC---ceeEEee------c-CCcceEEEEEcCCCCcEEEEEeCC------Cc
Q 004737          499 RFS--PSLSRLATS-SADRTVRVWDTENPD---YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE  559 (732)
Q Consensus       499 ~fs--pdg~~Lasg-s~Dg~I~IWDl~s~~---~~~~~l~------~-h~~~V~sl~fspdg~~llaSgs~D------g~  559 (732)
                      .++  .++++|++. -.++.|.|+|+.+..   ...+++.      . .......+.+.|++  +++++..+      +.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence            346  778877665 457899999997441   1233331      0 11234567788997  55565544      78


Q ss_pred             EEEEECCCCeeeeEEeccCC----eeEEEEeCCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEc
Q 004737          560 IRYWSINNGSCAGVFKCQSG----ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ  616 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~~~----i~~v~~sp~g~~ll~~s-------------------~dg~I~IwDl~t~~~i~~l~  616 (732)
                      |.++|..+++.+..+.....    ...+-|+|+++.+++..                   ....|.+||+.+++.+.++.
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            99999999999988874322    34578899999887774                   26899999999998888776


Q ss_pred             CC-C-CCEEEEEE--eCCCCEEEEEeC-------CeEEEEECCCCCCceeEEEe--ec----------------CCCceE
Q 004737          617 GH-K-NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFH  667 (732)
Q Consensus       617 ~h-~-~~V~sla~--spdg~~LasgsD-------g~I~IWDl~t~~~~~~i~~~--~~----------------~~~~I~  667 (732)
                      .. . .....|.|  +|+++++++++.       ++|.+|....+. ......+  ..                ......
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCcee
Confidence            42 1 23445656  999998776553       477776665431 1222211  11                024467


Q ss_pred             EEEEeCCCCEEEEEEc-CCeEEEEECCC---CeEE-EEc-c-C------------CCCeeEEEEeCCCCEEEEEE
Q 004737          668 SCVFHPTFPSLLVIGC-YETLELWNMTE---NKTL-TLS-A-H------------DKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       668 sl~fspdg~~L~sgs~-dg~I~IwDl~t---~~~~-~~~-~-h------------~~~V~sla~spdg~~LaSgs  723 (732)
                      .+.+++|+++|+++.. .+.|.+||+..   .+.+ .+. + .            ......++++|||++|+++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            8899999999998887 45999999863   2344 221 1 1            01368899999999999887

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.01  E-value=4.9e-08  Score=114.60  Aligned_cols=264  Identities=12%  Similarity=0.079  Sum_probs=171.0

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCc----------e-EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------V-~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      +..|++++.++.|..+|..+|+.+-.+......          + ..+++  ++..|++++.|+.|..+|..+++...+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            457777788899999999999998877543211          0 11222  3567888889999999999998854333


Q ss_pred             eecCC---cceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccC--C--------------------
Q 004737          531 FTGHS---TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS--G--------------------  579 (732)
Q Consensus       531 l~~h~---~~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~--~--------------------  579 (732)
                      .....   ..+. ...+. + ..+++..+     .+|.|+.||.++++.+..+....  .                    
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            22111   1111 11111 2 34443332     25899999999999998776311  0                    


Q ss_pred             ----------eeEEEEeCCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------CC
Q 004737          580 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ  621 (732)
Q Consensus       580 ----------i~~v~~sp~g~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~  621 (732)
                                ...++++++.+.+++++.++                   .|..+|.++++.+..+..  |.       .+
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                      12468888888888887765                   399999999999887764  22       23


Q ss_pred             EEEEEEeCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC------------Cc--------------------
Q 004737          622 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK--------------------  665 (732)
Q Consensus       622 V~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~------------~~--------------------  665 (732)
                      +....+..+|+   +|+.++ +|.++++|..+++   .+.......            .+                    
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~  378 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF  378 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence            33333334665   567777 9999999999984   332111100            00                    


Q ss_pred             ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCeEEEEccCCC
Q 004737          666 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK  705 (732)
Q Consensus       666 ----I~sl~fspdg~~L~sgs------------------------------------~dg~I~IwDl~t~~~~~~~~h~~  705 (732)
                          ...++++|+...+++..                                    .++.|+.||+.+++.+-...+..
T Consensus       379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~  458 (668)
T 1kv9_A          379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT  458 (668)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred             cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence                11267888777666522                                    13689999999999883323333


Q ss_pred             CeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          706 LVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       706 ~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+....+...+.+|++++.||.|++||
T Consensus       459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          459 HWNGGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCcCceeEeCCCEEEEECCcccchhhh
Confidence            444445556788999999999999986

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.01  E-value=5.5e-07  Score=92.40  Aligned_cols=222  Identities=7%  Similarity=0.010  Sum_probs=143.9

Q ss_pred             CeEEEEeCCCeEEEEecCCCCce----eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CC
Q 004737          505 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG  579 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~----~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~  579 (732)
                      .+|+.+.. +.|+.++++.....    ...+......+..++|++++..++++...++.|.++++........+... ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            35555543 47888888764321    11122223457899999987788878777889999999866544333322 46


Q ss_pred             eeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEECCCCCCce
Q 004737          580 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE  654 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-D---g~I~IWDl~t~~~~~  654 (732)
                      ...++++++++.++++.. .+.|.++|+..................++++|++..|+.+. .   +.|.++++..... .
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence            789999998777777765 57999999875433222332235678999999766665555 3   5888888764321 2


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  732 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD  732 (732)
                      .+  ..........+++++++.+|+++... +.|.++|........+.........+++.  +..|+.+. ..+.|.++|
T Consensus       160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence            11  11223457889999998878777654 58999999865544333333455677764  45555555 456777653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=1.4e-07  Score=97.61  Aligned_cols=204  Identities=11%  Similarity=0.022  Sum_probs=143.1

Q ss_pred             eEEEEeccCCC--ceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCC
Q 004737          483 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN  557 (732)
Q Consensus       483 ~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~D  557 (732)
                      +.+.++. |..  ....+.|++++.++++.+.  ++.|+++|+.+++. +..+. +.......+++.  ++.++++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            4555563 443  3679999998644444432  57999999999875 44433 222223345555  45777777789


Q ss_pred             CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCC
Q 004737          558 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE  632 (732)
Q Consensus       558 g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~  632 (732)
                      +.|.++|..+.+.+..+... ......++++++.++++..++.|.++|..+.+.+..+.-..     ..++.+.|. +++
T Consensus        86 ~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             CEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            99999999999999988754 12234466688888887778999999999988887766321     246788888 675


Q ss_pred             EEEEEe-CCeEEEEECCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 004737          633 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN  695 (732)
Q Consensus       633 ~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-------------~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~  695 (732)
                      +++... ++.|.+.|..++   +.+..+...             ....+.++|+|+++.+++++. .+.|++.++...
T Consensus       164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            555444 789999999998   555555421             135689999999987777764 568888887554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.96  E-value=4.2e-10  Score=122.45  Aligned_cols=200  Identities=9%  Similarity=-0.012  Sum_probs=109.5

Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC--e
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--A  580 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~--i  580 (732)
                      ++..+++++.|+.|+.||..+++. +..+..  +.+.+..+..++ .++++++.|+.|+.||..+++.+..+.....  +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            577899999999999999999875 444443  455555555554 4555777899999999999887765543211  1


Q ss_pred             e-EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737          581 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       581 ~-~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~  658 (732)
                      . ...+ ..++.+++++.++.|+.||.++++.+..+..+.    .+.++|++..|++++ |+.|+.||.++++..-... 
T Consensus        84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-  157 (369)
T 2hz6_A           84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-  157 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-
T ss_pred             ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-
Confidence            0 1111 134678888899999999999999887776543    234566777787777 8999999999885322211 


Q ss_pred             eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeE-EEEeCCC
Q 004737          659 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVN  716 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~s-la~spdg  716 (732)
                      ...    ....++..+.   ..+++++.++.|+.||..+++.+-......++.. ..++.++
T Consensus       158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg  215 (369)
T 2hz6_A          158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREG  215 (369)
T ss_dssp             EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSS
T ss_pred             ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCc
Confidence            111    1122333332   4588889999999999999998733334455543 3344444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.91  E-value=2.9e-07  Score=105.95  Aligned_cols=263  Identities=11%  Similarity=0.098  Sum_probs=165.7

Q ss_pred             CCEEEEEEC-CCcEEEEEc-CCCeEEEEeccCCC-ce----------EEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          462 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       462 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~-~V----------~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      +..+++++. ++.|..+|. .+++.+-.+..... .+          ..+++  ++..+++++.|+.|..+|..+++...
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            446666666 889999999 89998877643221 00          11223  35678888899999999999987543


Q ss_pred             EEee-cCC--cceE-EEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEEeccCCe-------------------
Q 004737          529 RTFT-GHS--TTVM-SLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGA-------------------  580 (732)
Q Consensus       529 ~~l~-~h~--~~V~-sl~fspdg~~llaSgs~-----Dg~I~iWDl~t~~~i~~~~~~~~i-------------------  580 (732)
                      +.-. .+.  ..+. ...+. + ..+++.+..     ++.|+.+|..+++.+..+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            3221 111  0111 11112 2 344433332     789999999999998877643221                   


Q ss_pred             --------------------eEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCC--C---
Q 004737          581 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGH--K---  619 (732)
Q Consensus       581 --------------------~~v~~sp~g~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~h--~---  619 (732)
                                          ..+++.++.+.++++..+                +.|..+|.++++.+..+...  .   
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                                235677777788777642                35999999999988877532  1   


Q ss_pred             -----CCEEEEEEeCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC-------------Cce-----------
Q 004737          620 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF-----------  666 (732)
Q Consensus       620 -----~~V~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~-------------~~I-----------  666 (732)
                           .++. +....+|+   +++.++ +|.++++|..+++   .+.......             .++           
T Consensus       298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~  373 (571)
T 2ad6_A          298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH  373 (571)
T ss_dssp             CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred             cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCCC
Confidence                 1221 22234674   566666 8899999998884   333322111             111           


Q ss_pred             ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEECCC
Q 004737          667 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE  694 (732)
Q Consensus       667 ---------------~sl~fspdg~~L~sgs~-------------------------------------dg~I~IwDl~t  694 (732)
                                     ..++|+|+...+++...                                     ++.|+.||..+
T Consensus       374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t  453 (571)
T 2ad6_A          374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT  453 (571)
T ss_dssp             CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred             CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence                           24578888877777642                                     46899999999


Q ss_pred             CeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          695 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       695 ~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++.+-...+...+....+...+.+|+.++.||.|++||
T Consensus       454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence            98873223333333333344567788899999999886

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.91  E-value=9.7e-07  Score=93.29  Aligned_cols=234  Identities=10%  Similarity=0.020  Sum_probs=147.0

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-c------------------CCCceEEEEEcCCCCeEEEEe
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSS  511 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~------------------h~~~V~~l~fspdg~~Lasgs  511 (732)
                      ....+++|++++++++++..++.|..||..+++...... .                  ....+..+++.++...|+.+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            345678999999978888889999999987755432211 0                  013578999998334555565


Q ss_pred             CCCeEEEEecCCCCceeEEeec-----CCcceEEEEEcC-CCCcEEEEEeC-----------------CCcEEEEECCCC
Q 004737          512 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG  568 (732)
Q Consensus       512 ~Dg~I~IWDl~s~~~~~~~l~~-----h~~~V~sl~fsp-dg~~llaSgs~-----------------Dg~I~iWDl~t~  568 (732)
                      ..+.|.++|..++.  +..+..     .......+++.+ +|. ++++...                 ++.|..||..++
T Consensus        99 ~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           99 CYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             TTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             CCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            55668888877543  222211     113468899999 874 4444321                 367999998877


Q ss_pred             eeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCC---eEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-----
Q 004737          569 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD-----  639 (732)
Q Consensus       569 ~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~---~~i~~l~~h~~~V~sla~spdg~~LasgsD-----  639 (732)
                      +.............++++++++.++++.. .+.|.+||+...   ... .+....+ ...++++++|.++++...     
T Consensus       176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            65544433355678999999987777754 589999998752   211 1111223 788999999987776543     


Q ss_pred             ------CeEEEEECCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCC
Q 004737          640 ------ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN  695 (732)
Q Consensus       640 ------g~I~IWDl~t~~~~~~i~~~~~~~----~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~  695 (732)
                            +.|.++|.. +   +.+..+....    ..+..+++ .++. |++++ .++.|.++++...
T Consensus       254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSSCSEEEEEEC---
T ss_pred             ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEE-eCCE-EEEeecCCCceEEEecccc
Confidence                  467777764 3   3444444322    34566666 3444 44444 5668888887643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.91  E-value=3.8e-06  Score=100.32  Aligned_cols=265  Identities=7%  Similarity=0.050  Sum_probs=180.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ...|.++...++|.+.+ |+.+ -|.+||..+++.......       ....|.++...++|. |..|+.++-|.+|+..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            35699999999887554 4455 689999888765543321       235799999998876 5567777779999877


Q ss_pred             CCCceeEEeec-------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---------ccCCeeEEEEe
Q 004737          523 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQ  586 (732)
Q Consensus       523 s~~~~~~~l~~-------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---------~~~~i~~v~~s  586 (732)
                      +...  ..+..       ....|.++...+++. +. .|+.++-|.+||..++.......         ....|.++...
T Consensus       339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             GGSS--EEECCCTTSSSCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred             cccc--eEEcCCCCCCCCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence            5443  22211       234689998887764 33 46667679999988766543321         12457888888


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEEc----CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee--
Q 004737          587 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS--  660 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~----~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~--  660 (732)
                      +++..|.+++.++.|.+||..+++......    .....|.++...++|.+.++.. +-|.+||..++   .. ..+.  
T Consensus       415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~-~~~~~~  489 (795)
T 4a2l_A          415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SF-TTIEKE  489 (795)
T ss_dssp             TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EE-EECCBC
T ss_pred             CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eE-EEcccc
Confidence            887657788888889999998876543322    1345799999998888777655 45888998765   22 2221  


Q ss_pred             -----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-------cCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          661 -----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       661 -----~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-------~h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                           .....|.++...+++. |.+++. +.|.+||..+++. .+.       .....|.++...+++.+.++. ..| |
T Consensus       490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~G-l  564 (795)
T 4a2l_A          490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-REG-F  564 (795)
T ss_dssp             TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SSC-E
T ss_pred             ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CCC-c
Confidence                 1236789999999888 455555 5699999887766 332       134578999998888865544 345 4


Q ss_pred             EEe
Q 004737          729 KIW  731 (732)
Q Consensus       729 ~IW  731 (732)
                      ..|
T Consensus       565 ~~~  567 (795)
T 4a2l_A          565 YCF  567 (795)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.89  E-value=3.4e-06  Score=100.70  Aligned_cols=267  Identities=7%  Similarity=0.094  Sum_probs=176.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      +...|.++...+++.+.+ |+.++-|.+||..+++.......       ....|.++...++|.+. .|+.+ -|.+||.
T Consensus       213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~  289 (795)
T 4a2l_A          213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHE  289 (795)
T ss_dssp             -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEET
T ss_pred             CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcC
Confidence            356799999888886544 55455599999888765543322       13569999998887754 45555 5888998


Q ss_pred             CCCCceeEEeec--------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------ccCCeeEEEEe
Q 004737          522 ENPDYSLRTFTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQ  586 (732)
Q Consensus       522 ~s~~~~~~~l~~--------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-------~~~~i~~v~~s  586 (732)
                      .+...  ..+..        ....|.++...++|. +. .|+.++-|.+|+..+........       ....|.++...
T Consensus       290 ~~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d  365 (795)
T 4a2l_A          290 GTDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG-MW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED  365 (795)
T ss_dssp             TTTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC-EE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred             CCCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC-EE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence            76542  22221        235699999988864 33 46666779999876544322111       12347888888


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--------CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          587 PRLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--------h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                      .++. +.+|+.++.|..||..++........        ....|.+++..+++.+|..|. ++-|.+||..++.   . .
T Consensus       366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~-~  440 (795)
T 4a2l_A          366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---V-E  440 (795)
T ss_dssp             TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---E-E
T ss_pred             CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---E-E
Confidence            7754 66788888899999987755432211        235799999999998444455 6789999988752   2 2


Q ss_pred             Eee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc-------CCCCeeEEEEeCCCCEEEEEECC
Q 004737          658 ELS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHD  725 (732)
Q Consensus       658 ~~~-----~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~-------h~~~V~sla~spdg~~LaSgs~D  725 (732)
                      .+.     .....|.++...+++. |.+++. +.|.+||..+++...+..       ....|.++...+++.+.+.. .+
T Consensus       441 ~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~  517 (795)
T 4a2l_A          441 NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-EE  517 (795)
T ss_dssp             EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-SS
T ss_pred             EeecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-CC
Confidence            222     1345789999988887 555555 569999998887664432       23679999998888766544 45


Q ss_pred             CeEEEe
Q 004737          726 KCVKIW  731 (732)
Q Consensus       726 G~I~IW  731 (732)
                      | |..|
T Consensus       518 G-l~~~  522 (795)
T 4a2l_A          518 G-LSVF  522 (795)
T ss_dssp             C-EEEE
T ss_pred             c-eEEE
Confidence            5 5444

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.87  E-value=2e-06  Score=90.33  Aligned_cols=233  Identities=9%  Similarity=0.026  Sum_probs=145.7

Q ss_pred             CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-CCC-c
Q 004737          482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E  559 (732)
Q Consensus       482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~Dg-~  559 (732)
                      .+.+..+... .....++|+++++++++-..++.|..||.+...  ...+. ....+..+++.+++. ++++.. .++ .
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~-~~~~p~gia~~~dG~-l~vad~~~~~~~   96 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHAT-VEGKVSGLAFTSNGD-LVATGWNADSIP   96 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEE-CSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEe-CCCCceeEEEcCCCc-EEEEeccCCcce
Confidence            3445555433 467899999999877776688999999987532  22222 335688999999986 443433 232 4


Q ss_pred             EEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE-EEEEc---------CCCCCEEEEE
Q 004737          560 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC  626 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~-i~~l~---------~h~~~V~sla  626 (732)
                      |..+|..+++........  .....++..+. ..++++. .++.|+++|..++.. +....         ..-.....| 
T Consensus        97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A           97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             EEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            777787777765443322  12344554444 4555555 478999999886532 21111         111245566 


Q ss_pred             EeCCCCEEEEEe--CCeEEEEECCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE---E
Q 004737          627 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L  700 (732)
Q Consensus       627 ~spdg~~Lasgs--Dg~I~IWDl~t-~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~---~  700 (732)
                       ++++.+|+.+.  .+.|.+|++.. +.. .....+.. ......++++++|.++++....+.|.+||.. ++...   +
T Consensus       175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~  250 (306)
T 2p4o_A          175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA  250 (306)
T ss_dssp             -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred             -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence             78888777776  67999999875 221 11111111 1345668999999865555567799999975 55532   2


Q ss_pred             ccCCCCeeEEEEe---CCCCEEEEEECC
Q 004737          701 SAHDKLVSSLAAS---TVNGMVASASHD  725 (732)
Q Consensus       701 ~~h~~~V~sla~s---pdg~~LaSgs~D  725 (732)
                      ......+++++|.   ++++.|+.++..
T Consensus       251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ccccCCceEEEEecccCCCCEEEEECCC
Confidence            2233678999998   888877766643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.87  E-value=1.1e-06  Score=92.87  Aligned_cols=230  Identities=9%  Similarity=0.020  Sum_probs=145.3

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec--------------------CCcceEEEEEcCCCCcEEE
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC  552 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~--------------------h~~~V~sl~fspdg~~lla  552 (732)
                      ....+++|.+++++++++..++.|..||..+...  ..+..                    ....+..+++.+++..+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            3457788999998888888999999999876543  22211                    1135788999973345554


Q ss_pred             EEeCCCcEEEEECCCCeeeeEEec-----cCCeeEEEEeC-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 004737          553 SCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ  609 (732)
Q Consensus       553 Sgs~Dg~I~iWDl~t~~~i~~~~~-----~~~i~~v~~sp-~g~~ll~~s~-----------------dg~I~IwDl~t~  609 (732)
                       ++..+.|..+|..++........     ......+++.+ ++..+++-..                 ++.|..||..++
T Consensus        97 -~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 -VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             -EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             -EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence             43345588888875543221111     12367899999 8765554322                 367999998877


Q ss_pred             eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEc--
Q 004737          610 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGC--  683 (732)
Q Consensus       610 ~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~--~~i~~~~~~~~~I~sl~fspdg~~L~sgs~--  683 (732)
                      +...... .......|+|++++++|+.+.  ++.|.+|++......  ..+..   ... ...++++++|.++++...  
T Consensus       176 ~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~  250 (322)
T 2fp8_A          176 ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEEL  250 (322)
T ss_dssp             EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEET
T ss_pred             EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcc
Confidence            6443322 123456799999999777665  679999998753221  12222   223 788999999985555544  


Q ss_pred             --------CCeEEEEECCCCeEE-EEccC----CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          684 --------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       684 --------dg~I~IwDl~t~~~~-~~~~h----~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                              .+.|..+|.. ++.+ .+...    ...++++++. ++.++++....+.|.+++
T Consensus       251 ~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          251 DGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             TSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEE
T ss_pred             cccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEe
Confidence                    3578888875 5554 33322    2457777773 555555555667777653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.84  E-value=9.2e-07  Score=91.40  Aligned_cols=201  Identities=7%  Similarity=0.026  Sum_probs=138.8

Q ss_pred             EEEEEecCCCC--CeEEEEEcCCCCEEEEEEC--CCcEEEEEcCCCeEEEEeccCC-CceEEEEEcCCCCeEEEE-eCCC
Q 004737          441 TEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATS-SADR  514 (732)
Q Consensus       441 ~~v~~l~~H~~--~V~~lafSpdg~~Lasgs~--Dg~I~VWd~~t~~~~~~l~~h~-~~V~~l~fspdg~~Lasg-s~Dg  514 (732)
                      ..+..++ |..  ....+.|++|+.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  ++.|+.+ -.++
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~   86 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred             eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence            3445553 332  3689999998755554443  5799999999999998875322 223345554  4455544 4578


Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccC------CeeEEEEeCC
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPR  588 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~------~i~~v~~sp~  588 (732)
                      .|.++|..+.+. +..+......  ...+++++..++++- .++.|.++|..+.+.+..+....      ....+.|. +
T Consensus        87 ~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           87 IGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             EEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            999999998664 4555422122  233556777887665 58899999999998888777432      35677887 5


Q ss_pred             CCEEEEEEc-CCeEEEEECCCCeEEEEEcCC-------------CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC
Q 004737          589 LGRILAAAI-ENYISILDVETQVCRLKLQGH-------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG  650 (732)
Q Consensus       589 g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h-------------~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~  650 (732)
                      + .+++... ++.|.+.|..+++.+..+...             ....+.|+|+|+++.|++++  .++|.+.++...
T Consensus       162 g-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          162 G-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             T-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             C-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            4 6666664 689999999999988887532             13568999999987666666  678888887653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.84  E-value=1.2e-06  Score=101.11  Aligned_cols=265  Identities=9%  Similarity=0.043  Sum_probs=165.7

Q ss_pred             CCEEEEEEC-CCcEEEEEc-CCCeEEEEeccCCCc-----------eEEEEEcCCCCe----EEEEeCCCeEEEEecCCC
Q 004737          462 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP  524 (732)
Q Consensus       462 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~~-----------V~~l~fspdg~~----Lasgs~Dg~I~IWDl~s~  524 (732)
                      +..|++++. ++.|.-+|. .+++.+-.+......           ...+++.|.+..    |++++.|+.|..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            446666776 889999999 899998776533211           123456444444    888889999999999998


Q ss_pred             CceeEEeecC-C--cceE-EEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccCCe---------------
Q 004737          525 DYSLRTFTGH-S--TTVM-SLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA---------------  580 (732)
Q Consensus       525 ~~~~~~l~~h-~--~~V~-sl~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~~i---------------  580 (732)
                      +...+.-... .  ..+. ...+. + ..+++.++     .++.|+.+|.++++.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            8544322211 0  0111 11122 2 34443332     3799999999999998877643322               


Q ss_pred             ------------------------eEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCCCC
Q 004737          581 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN  620 (732)
Q Consensus       581 ------------------------~~v~~sp~g~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~h~~  620 (732)
                                              ..+++.+..+.+++++.+                +.|..+|.++++.+..+.....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                    135677788888888765                3899999999999887764221


Q ss_pred             ----------CEEEEEEe-CCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-------------CCce------
Q 004737          621 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKF------  666 (732)
Q Consensus       621 ----------~V~sla~s-pdg---~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-------------~~~I------  666 (732)
                                ++. +... .+|   ..++.++ +|.++++|..+++   .+......             ..++      
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~  375 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEYG  375 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccccC
Confidence                      121 2222 467   4566666 8999999999884   33322211             1111      


Q ss_pred             --------------------EEEEEeCCCCEEEEEE---------------------------------------cCCeE
Q 004737          667 --------------------HSCVFHPTFPSLLVIG---------------------------------------CYETL  687 (732)
Q Consensus       667 --------------------~sl~fspdg~~L~sgs---------------------------------------~dg~I  687 (732)
                                          ..++|+|+...+++..                                       ..+.|
T Consensus       376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l  455 (599)
T 1w6s_A          376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI  455 (599)
T ss_dssp             CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred             CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence                                2456777766555431                                       23689


Q ss_pred             EEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          688 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       688 ~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus       456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence            999999998872222222222222233567888899999999876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.81  E-value=6.8e-07  Score=91.66  Aligned_cols=192  Identities=12%  Similarity=0.122  Sum_probs=134.6

Q ss_pred             eEEEEeccCCC--ceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737          483 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  558 (732)
Q Consensus       483 ~~~~~l~~h~~--~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg  558 (732)
                      +.+.++ .|..  ....+.|+ ++.++.+.+.+|  .|+++|+.+++. +..+.-. .......+.++++.+++..-.++
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence            345555 3443  34788998 666666666665  999999999875 4443322 23333333334567777777899


Q ss_pred             cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCCE
Q 004737          559 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY  633 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~~  633 (732)
                      .+.+||..+.+.+..+.....-.  .+.++++.++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|++
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG~--glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEGW--GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCC--CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEEECccCcEEEEEECCCCce--EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence            99999999999999998755333  344567778877778899999999998887765421     345667886 6765


Q ss_pred             EEEEe-CCeEEEEECCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 004737          634 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~------------~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      ++... ++.|.+.|..++   +.+..+...            ....+.++|+|+++.|++.+..
T Consensus       185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            55554 789999999998   555554432            2356899999999888888764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=6.8e-06  Score=97.85  Aligned_cols=274  Identities=8%  Similarity=-0.059  Sum_probs=175.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec--------------cCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT  515 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------------~h~~~V~~l~fspdg~~Lasgs~Dg~  515 (732)
                      ...|.++...++|. |..|+..+-|.++|..+........              -....|.++...++|. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            45799999988885 5556665678899987765432211              1345799999988775 666777777


Q ss_pred             EEEEecCCCCceeEEee--------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccCCeeEE
Q 004737          516 VRVWDTENPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM  583 (732)
Q Consensus       516 I~IWDl~s~~~~~~~l~--------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~~i~~v  583 (732)
                      |..|+............        -....|.++...+++. +. .|+.++-|.+||..++.......    ....|.++
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            89998876543221110        1235688998887754 33 45555669999987654332111    12347778


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-
Q 004737          584 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-  660 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~-  660 (732)
                      ...+++ .|.+++.++.|..||..+++......  .....|.++...+++.+.+... +-|.+||..+... ..+.... 
T Consensus       413 ~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~  489 (781)
T 3v9f_A          413 LKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN  489 (781)
T ss_dssp             EECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred             EECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence            777664 46667777889999998776443221  1346799999988887666544 6688999876532 1111111 


Q ss_pred             --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc----CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          661 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       661 --~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~----h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                        .....|.++...+++. |.+++.++.|..||..+++...+..    ....|.++...+++.+.++ +.+|.|..||
T Consensus       490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d  565 (781)
T 3v9f_A          490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS  565 (781)
T ss_dssp             SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred             cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence              1136789999999887 5666665568889988877665432    2356899998888876554 4467546654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.78  E-value=7.3e-06  Score=86.05  Aligned_cols=235  Identities=9%  Similarity=0.027  Sum_probs=144.4

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--eEEEE
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVW  519 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IW  519 (732)
                      .+..+..+ .....++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++.....  .|..+
T Consensus        24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~  100 (306)
T 2p4o_A           24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL  100 (306)
T ss_dssp             EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence            34445433 45789999999997777667899999998764 333332 235688999999998666554332  46667


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEEe-------c---cCCeeEEEEeCC
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMRFQPR  588 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~-i~~~~-------~---~~~i~~v~~sp~  588 (732)
                      |..++......-.........+++.++ ..++++...++.|+++|...++. +....       .   -.....+  +++
T Consensus       101 d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d  177 (306)
T 2p4o_A          101 VKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF  177 (306)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred             cCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence            766655321111112223345555544 45555555688999999876531 11110       0   0123444  788


Q ss_pred             CCEEEEEEc-CCeEEEEECCC-CeE--EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737          589 LGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       589 g~~ll~~s~-dg~I~IwDl~t-~~~--i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                      +++++++.. .+.|.+||+.. ++.  ...+. .......++++++|+++++.. .+.|.+||.. +.. ..+..+....
T Consensus       178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~~~  254 (306)
T 2p4o_A          178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQGV  254 (306)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGGTC
T ss_pred             CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccccc
Confidence            888777765 57999999874 321  11111 113456789999998766655 7789999975 311 1122333333


Q ss_pred             CceEEEEEe---CCCCEEEEEEcCC
Q 004737          664 NKFHSCVFH---PTFPSLLVIGCYE  685 (732)
Q Consensus       664 ~~I~sl~fs---pdg~~L~sgs~dg  685 (732)
                      ....+++|.   +++..|+++...+
T Consensus       255 ~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          255 IGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCceEEEEecccCCCCEEEEECCCC
Confidence            568999998   8988888877654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.76  E-value=1.1e-06  Score=102.96  Aligned_cols=255  Identities=13%  Similarity=0.132  Sum_probs=158.6

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCC----CceEE-EEEcCCCCeEEEEeC------CCeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~V~~-l~fspdg~~Lasgs~------Dg~I~IWDl~s~~~~~~~  530 (732)
                      +..|++++.|+.|..+|.++|+.+..+....    ..+.+ ..+. ++ .++++..      ++.|..||..+++...+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4578888899999999999999987765421    11111 1111 33 4555432      589999999998853332


Q ss_pred             eec--CC----------------------------cceEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 004737          531 FTG--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIR  561 (732)
Q Consensus       531 l~~--h~----------------------------~~V~sl~fspdg~~llaSgs~Dg-------------------~I~  561 (732)
                      ...  ..                            .....+++.++.. +++.+..++                   .|.
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            211  00                            0112467777754 455665554                   499


Q ss_pred             EEECCCCeeeeEEecc----------CCeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCC--------
Q 004737          562 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN--------  620 (732)
Q Consensus       562 iWDl~t~~~i~~~~~~----------~~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~--------  620 (732)
                      .+|.++++.+..+...          .......+..+++   .+++++.+|.++++|.++++.+..+.....        
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~  353 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence            9999999999887742          1222233334554   578888999999999999988754432110        


Q ss_pred             ----CE------------------------EEEEEeCCCCEEEEE-----------------------------------
Q 004737          621 ----QV------------------------HSVCWNTSGEYLASV-----------------------------------  637 (732)
Q Consensus       621 ----~V------------------------~sla~spdg~~Lasg-----------------------------------  637 (732)
                          ++                        ..++++|+..+++..                                   
T Consensus       354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence                00                        125777876665541                                   


Q ss_pred             -e-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCC-eeEEEEe
Q 004737          638 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAAS  713 (732)
Q Consensus       638 -s-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~-V~sla~s  713 (732)
                       . +|.|..||+.++   +.+-..... .......+...+..+++++.++.|++||.++++.+ .+...... -.-+.+.
T Consensus       434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~  509 (668)
T 1kv9_A          434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE  509 (668)
T ss_dssp             GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence             1 377999999988   444443322 23333455557788999999999999999999988 44332211 1233444


Q ss_pred             CCCC-EEEEEE
Q 004737          714 TVNG-MVASAS  723 (732)
Q Consensus       714 pdg~-~LaSgs  723 (732)
                      .+++ +++.++
T Consensus       510 ~~G~~yva~~~  520 (668)
T 1kv9_A          510 LAGRQYVAIMA  520 (668)
T ss_dssp             ETTEEEEEEEE
T ss_pred             ECCEEEEEEEe
Confidence            5665 455444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.76  E-value=4.2e-05  Score=80.85  Aligned_cols=228  Identities=8%  Similarity=-0.046  Sum_probs=147.1

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecCCC---CceeEEeecCCcceE
Q 004737          464 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM  539 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~s~---~~~~~~l~~h~~~V~  539 (732)
                      +|+.+. ...|+..|+.+.+....+. ....+..++|++++..|+.+ ..++.|..+++...   ......+...-....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            344433 3578999998876665554 34567899999866555544 45689999998751   211222322224568


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEEEEEc
Q 004737          540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ  616 (732)
Q Consensus       540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~t~~~i~~l~  616 (732)
                      .+++.+.+..++++-...+.|.++|+........+. .......++++|.++.++.+...  +.|..+++..........
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~  160 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence            899987767777777778899999987544433333 23467899999988888877764  689999986543332233


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 004737          617 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT  693 (732)
Q Consensus       617 ~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~  693 (732)
                      ..-.....|+|++++..|+.+.  .+.|..+|+.... ...+............+++.. + .++.+. ..+.|..++..
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-D-KVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-T-EEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC-C-EEEEEECCCCeEEEEeCC
Confidence            3345688999999887777776  6699999997532 233322212223456777753 3 455544 45689999876


Q ss_pred             CCe
Q 004737          694 ENK  696 (732)
Q Consensus       694 t~~  696 (732)
                      +++
T Consensus       238 ~g~  240 (316)
T 1ijq_A          238 TGS  240 (316)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.74  E-value=2.2e-07  Score=108.74  Aligned_cols=266  Identities=9%  Similarity=0.039  Sum_probs=154.7

Q ss_pred             EEEEcC-CCCEEEEEECCC-----------cEEEEEcCCCeEE--EEe-ccCCCceEEEEEcCCCCeEEEEeC-CCeEEE
Q 004737          455 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV  518 (732)
Q Consensus       455 ~lafSp-dg~~Lasgs~Dg-----------~I~VWd~~t~~~~--~~l-~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~I  518 (732)
                      ++++.+ ++++++.|+.+.           .+.+||..+.+-.  ..+ ..+.....++++..+++++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            567777 888889887643           5889998876532  223 223344456788889999999984 458999


Q ss_pred             EecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe-CC-----CcEEEEECCCCeeeeEE-----eccCCeeEEEEeC
Q 004737          519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQP  587 (732)
Q Consensus       519 WDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs-~D-----g~I~iWDl~t~~~i~~~-----~~~~~i~~v~~sp  587 (732)
                      ||..+.......-......-.++++.+++. +++.|+ .+     ..+.+||..+.+....-     ..........+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            999875432111011111223455566654 555666 34     56999999887654321     0000000011223


Q ss_pred             CCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEeC-CCCEEEEEe-CC-------
Q 004737          588 RLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE-------  640 (732)
Q Consensus       588 ~g~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~---------~~V~sla~sp-dg~~Lasgs-Dg-------  640 (732)
                      ++..++.++.+         ..+..||..+.........+.         ..-.++.|.. ++++++.|+ ++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            34444555443         457889988775443322221         1234455543 667777765 32       


Q ss_pred             ----eEEEEECCCCCCceeEEEe--ecCC-CceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCeEEEEcc
Q 004737          641 ----LVRVWSIGSGSKGECIHEL--SCTG-NKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLSA  702 (732)
Q Consensus       641 ----~I~IWDl~t~~~~~~i~~~--~~~~-~~I~sl~fspdg~~L~sgs~d-----------g~I~IwDl~t~~~~~~~~  702 (732)
                          .|.+||..+.   ......  .... ....++++.|+++.+++++.+           ..+.+||..+.+...+..
T Consensus       429 ~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~  505 (656)
T 1k3i_A          429 TNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP  505 (656)
T ss_dssp             CCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred             CcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence                5778887764   222221  1112 223456778899988888854           468999998877654321


Q ss_pred             ---CCCCeeEEEEeCCCCEEEEEEC
Q 004737          703 ---HDKLVSSLAASTVNGMVASASH  724 (732)
Q Consensus       703 ---h~~~V~sla~spdg~~LaSgs~  724 (732)
                         ......+..+.+++++++.|+.
T Consensus       506 ~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          506 NSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCccccccHhhcCCCcEEEecCCC
Confidence               1222334556789999999885

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.74  E-value=1.6e-06  Score=88.95  Aligned_cols=186  Identities=9%  Similarity=0.056  Sum_probs=129.4

Q ss_pred             eEEeecCCcc--eEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEE
Q 004737          528 LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS  602 (732)
Q Consensus       528 ~~~l~~h~~~--V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~  602 (732)
                      +.++ .|...  ...+.|+ + ..++.+++.+|  .|+++|+.+++.+..+..........+.+.++.++.... ++.+.
T Consensus        34 v~~~-phd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           34 VHSY-PHDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEE-ECCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEe-cCCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence            3444 35433  4788888 4 46777777666  899999999999999887766655444555677777765 78999


Q ss_pred             EEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC--C---CceEEEEEeCCCC
Q 004737          603 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFP  676 (732)
Q Consensus       603 IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~--~---~~I~sl~fspdg~  676 (732)
                      +||..+.+.+.++.... .-..++  +++..|+.+. ++.|.++|..+.   +.+..+...  +   ..++.+.|. +|.
T Consensus       111 v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~---~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESL---TPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTC---SEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCC---eEEEEEEeccCCccccccceeEEE-CCE
Confidence            99999999998887432 223444  5666666655 778999999887   444443321  2   334567776 665


Q ss_pred             EEEEEE-cCCeEEEEECCCCeEEEEccC-------------CCCeeEEEEeCCCCEEEEEEC
Q 004737          677 SLLVIG-CYETLELWNMTENKTLTLSAH-------------DKLVSSLAASTVNGMVASASH  724 (732)
Q Consensus       677 ~L~sgs-~dg~I~IwDl~t~~~~~~~~h-------------~~~V~sla~spdg~~LaSgs~  724 (732)
                       |++.. .++.|.+.|..+++.+....-             ....+.|+|+|+++.|+..+.
T Consensus       184 -lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          184 -IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             55554 567999999999998822211             235689999999887776664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.73  E-value=2.1e-06  Score=88.11  Aligned_cols=191  Identities=9%  Similarity=0.060  Sum_probs=134.7

Q ss_pred             eEEEEeccCC--CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          483 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       483 ~~~~~l~~h~--~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      +.+.++ .|.  .....+.|+ ++.++++.+.+|.|+++|+.+++..... ..  .........++++.+++..-.++.+
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLASDGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEECSSCEEEEESSSCEE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEEeCCEEEEEEccCCEE
Confidence            344555 343  334688887 4566667777889999999998864444 22  2333322333456777777789999


Q ss_pred             EEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCCEEE
Q 004737          561 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA  635 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~~La  635 (732)
                      .+||..+.+.+..+.....-..++  ++++.|+++..++.|.++|..+.+.+.++.-..     ..++.+.|. +|++++
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya  195 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA  195 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence            999999999999998755444444  567888888888999999999998887766422     245778887 776555


Q ss_pred             EEe-CCeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 004737          636 SVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       636 sgs-Dg~I~IWDl~t~~~~~~i~~~~~-------------~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      ... ++.|.+.|..++   +.+..+..             .....+.++|+|+++.|++.+..
T Consensus       196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            554 779999999998   55544432             12457899999988777777654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.72  E-value=1.9e-05  Score=84.88  Aligned_cols=238  Identities=9%  Similarity=0.008  Sum_probs=154.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecCCCCcee
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL  528 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~s~~~~~  528 (732)
                      .+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|..++++.... .
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~  108 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E  108 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence            4456677766644 444443 45688888877665555543 3458899999765555544 4678999999886542 2


Q ss_pred             EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEE
Q 004737          529 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILD  605 (732)
Q Consensus       529 ~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d--g~I~IwD  605 (732)
                      ..+.........+++.+.+..++++-...+.|.++++........+.. -.....++++|.++.++.+...  +.|..++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~  188 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS  188 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence            223322345678999987778887777788999999875443333322 2457889999988887777653  7899999


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-
Q 004737          606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-  682 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-  682 (732)
                      +........+...-...+.|+|++++..|+.+.  .+.|..+|+..... ..  .+.........+++. .+ .|+.+. 
T Consensus       189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~--~~~~~~~~P~giav~-~~-~ly~td~  263 (349)
T 3v64_C          189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KA--VISQGLPHPFAITVF-ED-SLYWTDW  263 (349)
T ss_dssp             TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEE-TT-EEEEEET
T ss_pred             CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EE--EEeCCCCCceEEEEE-CC-EEEEecC
Confidence            875433322223345678999999877777766  66899999875321 11  222223455677773 33 455554 


Q ss_pred             cCCeEEEEECCCCe
Q 004737          683 CYETLELWNMTENK  696 (732)
Q Consensus       683 ~dg~I~IwDl~t~~  696 (732)
                      ..+.|..++..+++
T Consensus       264 ~~~~V~~~~~~~G~  277 (349)
T 3v64_C          264 HTKSINSANKFTGK  277 (349)
T ss_dssp             TTTEEEEEETTTCC
T ss_pred             CCCeEEEEEccCCC
Confidence            45588888855554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.70  E-value=4.1e-06  Score=96.34  Aligned_cols=254  Identities=9%  Similarity=0.013  Sum_probs=153.6

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCC----CceEE-EEEcCCCCeEEEEeC------CCeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~V~~-l~fspdg~~Lasgs~------Dg~I~IWDl~s~~~~~~~  530 (732)
                      +..+++++.|+.|..+|..+++.+..+....    ..+.+ .... + ..+++++.      ++.|..+|..+++...+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            5578888889999999999999887654221    01211 1111 3 35555554      799999999998753332


Q ss_pred             eecCCc------------------------------------ce-EEEEEcCCCCcEEEEEeC-----------C----C
Q 004737          531 FTGHST------------------------------------TV-MSLDFHPSKEDLLCSCDN-----------N----S  558 (732)
Q Consensus       531 l~~h~~------------------------------------~V-~sl~fspdg~~llaSgs~-----------D----g  558 (732)
                      ......                                    .+ ..+++.++...+++..+.           |    +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            221100                                    00 135566654444433321           1    3


Q ss_pred             cEEEEECCCCeeeeEEeccC----------CeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 004737          559 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------  619 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~~----------~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------  619 (732)
                      .|..+|.++++.+..+....          ...-+....+++   .+++++.+|.++++|.++++.+..+....      
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            59999999999988776421          111122224553   45677789999999999998887654321      


Q ss_pred             -------CCE--------------------------EEEEEeCCCCEEEEEe----------------------------
Q 004737          620 -------NQV--------------------------HSVCWNTSGEYLASVS----------------------------  638 (732)
Q Consensus       620 -------~~V--------------------------~sla~spdg~~Lasgs----------------------------  638 (732)
                             .++                          ..++++|+..+|++..                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                   111                          2357788777666543                            


Q ss_pred             ----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC-CC
Q 004737          639 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL  706 (732)
Q Consensus       639 ----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~-~~  706 (732)
                                ++.|..||+.++   +.+..+... ..+....+...+..+++++.|+.|+.||.++++.+ .+.... ..
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~  508 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI  508 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence                      367889998887   333333322 22222333445667888999999999999999988 333221 11


Q ss_pred             eeEEEEeCCCCEEEE
Q 004737          707 VSSLAASTVNGMVAS  721 (732)
Q Consensus       707 V~sla~spdg~~LaS  721 (732)
                      -.-+.+..+++.++.
T Consensus       509 ~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          509 GSPMTYSFKGKQYIG  523 (571)
T ss_dssp             SCCEEEEETTEEEEE
T ss_pred             eeeEEEEECCEEEEE
Confidence            223445567764443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.69  E-value=1e-05  Score=93.13  Aligned_cols=263  Identities=10%  Similarity=0.029  Sum_probs=160.1

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCCce---------EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V---------~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      ..+++++.++.|..+|..+++.+-.+.......         ..+++  .+..+++++.|+.|..+|..+++...+.-..
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            355556654459999999999987765432210         11222  3557888889999999999998854332221


Q ss_pred             C-C--cceE-EEEEcC---CCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCC---------------------
Q 004737          534 H-S--TTVM-SLDFHP---SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG---------------------  579 (732)
Q Consensus       534 h-~--~~V~-sl~fsp---dg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~---------------------  579 (732)
                      . .  ..+. ...+..   ++..+++++.      .++.|+.+|..+++.+........                     
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            1 1  0111 111111   1222454554      378999999999998876543210                     


Q ss_pred             ---------------------eeEEEEeCCCCEEEEEEc--------------------C----CeEEEEECCCCeEEEE
Q 004737          580 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK  614 (732)
Q Consensus       580 ---------------------i~~v~~sp~g~~ll~~s~--------------------d----g~I~IwDl~t~~~i~~  614 (732)
                                           -..++++++.+.++++..                    |    +.|..+|.++++.+..
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                                 013567777788887774                    2    5899999999999887


Q ss_pred             EcC--CC--------CCEEEEEEe-CCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC-------------Cc-
Q 004737          615 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK-  665 (732)
Q Consensus       615 l~~--h~--------~~V~sla~s-pdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~-------------~~-  665 (732)
                      +..  |.        .++. +... .+|+   +++.++ +|.++++|..+++   .+.......             .+ 
T Consensus       307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~  382 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV  382 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred             EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence            753  32        1221 2222 4674   677777 8999999998884   333222111             00 


Q ss_pred             -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 004737          666 -------------------------------FHSCVFHPTFPSLLVIG--------------------------------  682 (732)
Q Consensus       666 -------------------------------I~sl~fspdg~~L~sgs--------------------------------  682 (732)
                                                     ...++++|+...+++..                                
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~  462 (582)
T 1flg_A          383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD  462 (582)
T ss_dssp             ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred             EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence                                           01346677665555543                                


Q ss_pred             -cCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          683 -CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       683 -~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                       .++.|+.||+.+++.+ ... +...+..-.....+.+++.++.||.|+.||
T Consensus       463 ~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          463 DHVGSLRAMDPVSGKVVWEHK-EHLPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             SCSEEEEEECTTTCCEEEEEE-ESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCcceEEEEECCCCCEEEEec-CCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence             2468999999999987 332 222332222233467888899999999886

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.67  E-value=7.7e-06  Score=83.06  Aligned_cols=185  Identities=10%  Similarity=0.093  Sum_probs=127.6

Q ss_pred             EEeecCC--cceEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEE
Q 004737          529 RTFTGHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISI  603 (732)
Q Consensus       529 ~~l~~h~--~~V~sl~fspdg~~llaSgs~Dg--~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~I  603 (732)
                      ..+ .|.  .....+.|+.  ..++.+.+.+|  .|+++|+.+++.+..+..........+...++.++.... ++.+.+
T Consensus        13 ~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v   89 (243)
T 3mbr_X           13 KRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV   89 (243)
T ss_dssp             EEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred             EEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence            344 455  3456899986  46777777654  899999999999999887766655544455677776654 789999


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC--C---CceEEEEEeCCCCE
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPS  677 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~--~---~~I~sl~fspdg~~  677 (732)
                      ||..+.+.+.++.... .-..++  +++..|+.+. ++.|.++|..+.   +.+..+...  .   ..++.+.|. +|..
T Consensus        90 ~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           90 YDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             EETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCEE
Confidence            9999999999887533 224555  4566555555 789999999887   344443322  1   345666766 5554


Q ss_pred             EEEEEcCCeEEEEECCCCeEEE-Ec--c-----------CCCCeeEEEEeCCCCEEEEEE
Q 004737          678 LLVIGCYETLELWNMTENKTLT-LS--A-----------HDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       678 L~sgs~dg~I~IwDl~t~~~~~-~~--~-----------h~~~V~sla~spdg~~LaSgs  723 (732)
                      ++..-.+..|.+.|..+++.+. +.  +           .....+.|+|+|+++.|+..+
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            4444357799999999999882 22  1           123568999999887666655

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.67  E-value=6.9e-06  Score=83.40  Aligned_cols=192  Identities=15%  Similarity=0.140  Sum_probs=133.5

Q ss_pred             eEEEEeccCC--CceEEEEEcCCCCeEEEEeCC--CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC
Q 004737          483 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  558 (732)
Q Consensus       483 ~~~~~l~~h~--~~V~~l~fspdg~~Lasgs~D--g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg  558 (732)
                      +.+.++ .|.  .....+.|+. +.++.+.+.+  ..|+++|+.+++. +....-. ...........++.++...-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEeCCEEEEEEeeCC
Confidence            445555 354  4466899986 4555555554  4999999999875 4433322 22222222333567777777899


Q ss_pred             cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEeCCCCE
Q 004737          559 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY  633 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~V~sla~spdg~~  633 (732)
                      .+.+||..+.+.+..+.....-..++  +++..|+++..++.|.++|..+.+.+.++.-..     ..++.+.|. +|++
T Consensus        86 ~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l  162 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL  162 (243)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence            99999999999999998765444444  567788888788999999999998887776422     356677776 6766


Q ss_pred             EEEEe-CCeEEEEECCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 004737          634 LASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       634 Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~-------------~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      ++... ++.|.+.|..++   +.+..+..             .....+.++++|++..|++.+..
T Consensus       163 yanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            65554 779999999998   55554442             12356899999998888887764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=2.9e-05  Score=92.36  Aligned_cols=273  Identities=10%  Similarity=0.034  Sum_probs=171.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-------CCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ...|.++...++|.+. .++.++-|..||..+++.......       ....|.++...+++.+.+ |+.+ -+.+||..
T Consensus       162 ~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~  238 (781)
T 3v9f_A          162 SEQTWTATEAEDGKLY-IGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNAN  238 (781)
T ss_dssp             CCCEEEEEEEETTEEE-EEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETT
T ss_pred             ccceEEEEECCCCCEE-EEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCC
Confidence            3568899888887544 466665799999888765432111       135699999888876554 4455 68899987


Q ss_pred             CCCceeEEee------cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---------------ccCCee
Q 004737          523 NPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------CQSGAT  581 (732)
Q Consensus       523 s~~~~~~~l~------~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---------------~~~~i~  581 (732)
                      +.........      .....|.++...+++. +. .|+..+-|.++|..+........               ....|.
T Consensus       239 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~  316 (781)
T 3v9f_A          239 TETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR  316 (781)
T ss_dssp             TTEEEC-----------CCCCEEEEEECTTSE-EE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred             CCcEEEEEcCCCccccccCceEEEEEECCCCC-EE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence            6543211111      1235688998887753 33 45554568899988765432211               123578


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc---------CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCC
Q 004737          582 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ---------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK  652 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~---------~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~  652 (732)
                      ++....++ .+.+|+.++.|..|+..+........         .....|.+++..++|.+.+...++-|.+||..+...
T Consensus       317 ~i~~D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~  395 (781)
T 3v9f_A          317 YIFQDSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA  395 (781)
T ss_dssp             EEEECSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE
T ss_pred             EEEEeCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE
Confidence            88888875 46778888889999987654322110         023569999999888877655466788999765311


Q ss_pred             ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          653 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       653 ~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      .............|.++...+++. |.+++.++.|..||..+++...+..   ....|.++...+++.+.+ |+..| |.
T Consensus       396 ~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~~G-l~  472 (781)
T 3v9f_A          396 IYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTHAG-VF  472 (781)
T ss_dssp             ECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EETTE-EE
T ss_pred             EEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EECCc-eE
Confidence            000000112346788998888887 6667777789999998887665432   356799998887776444 45554 54


Q ss_pred             Ee
Q 004737          730 IW  731 (732)
Q Consensus       730 IW  731 (732)
                      +|
T Consensus       473 ~~  474 (781)
T 3v9f_A          473 VI  474 (781)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.66  E-value=2.2e-05  Score=85.55  Aligned_cols=237  Identities=9%  Similarity=0.000  Sum_probs=153.2

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEE
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      .-+|.+..+++ +|+.+ ....|+.+++........+.. ...+..++|.+.+..|+ +-...+.|..|+++.... ...
T Consensus        78 ~~~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~  153 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEV  153 (386)
T ss_dssp             SSCEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEE
T ss_pred             CCeECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEE
Confidence            34566665533 44444 346788899887665555543 34588999997655555 445678999999886542 222


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEECC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVE  607 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~  607 (732)
                      +.........+++.+.+..++++-...+.|.++++........+.. -.....++++|.++.++.+...  +.|..+++.
T Consensus       154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            3322345678889887777877777778899999875443333322 2457889999988888777653  689999987


Q ss_pred             CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cC
Q 004737          608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CY  684 (732)
Q Consensus       608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~d  684 (732)
                      ...........-...+.|+|++++..|+.+.  .+.|..+|+....   ....+.........+++. .+ .|+.+. ..
T Consensus       234 G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~  308 (386)
T 3v65_B          234 GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHT  308 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTT
T ss_pred             CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCC
Confidence            6543333333445678999998877777766  6789999987532   111222223456677773 33 444444 45


Q ss_pred             CeEEEEECCCCeE
Q 004737          685 ETLELWNMTENKT  697 (732)
Q Consensus       685 g~I~IwDl~t~~~  697 (732)
                      +.|..++..+++.
T Consensus       309 ~~V~~~~~~~G~~  321 (386)
T 3v65_B          309 KSINSANKFTGKN  321 (386)
T ss_dssp             TEEEEEETTTCCS
T ss_pred             CeEEEEECCCCcc
Confidence            6888888655543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.62  E-value=3.3e-06  Score=86.60  Aligned_cols=175  Identities=8%  Similarity=0.033  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEc
Q 004737          538 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ  616 (732)
Q Consensus       538 V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~  616 (732)
                      ...+.|+  +..++.+.+.+|.|+++|+.+++.+..+ .........+.+.++.++... .++.+.+||..+.+.+.++.
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            4688887  3578888888999999999999999888 666655433444555666555 47899999999999999887


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeEEE
Q 004737          617 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETLEL  689 (732)
Q Consensus       617 ~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~--~~---~~I~sl~fspdg~~L~sgs-~dg~I~I  689 (732)
                      .. ..-..++  +++..|+.+. ++.|.++|..+.   +.+..+..  ..   ..++.+.|. +|. |++.. .++.|.+
T Consensus       134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~v  205 (268)
T 3nok_A          134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLE  205 (268)
T ss_dssp             CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEE
T ss_pred             CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEE
Confidence            53 2224455  5677777766 889999999887   34444332  22   235667777 665 55555 5679999


Q ss_pred             EECCCCeEEE-Ecc-------------CCCCeeEEEEeCCCCEEEEEE
Q 004737          690 WNMTENKTLT-LSA-------------HDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       690 wDl~t~~~~~-~~~-------------h~~~V~sla~spdg~~LaSgs  723 (732)
                      .|..+++.+. +..             -....+.|+|+|+++.|+..+
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999872 211             124678999999876555544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.61  E-value=8e-05  Score=79.10  Aligned_cols=265  Identities=8%  Similarity=-0.017  Sum_probs=150.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec----cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~----~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      ...+.+|.|.+++..+++ +.++.| ++..+.++.-..+.    .....+.+|.|.+ +..+ .++.++.|..  ..++.
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~--S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH--TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE--ESSTT
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE--ECCCC
Confidence            346999999888877774 566765 33344443332221    2245688999976 4444 4456664443  33222


Q ss_pred             ceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          526 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       526 ~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      .......   .+...+..+.+.+++ .+++++. ++.|.. ....++.-....  ....+..+.+.+++..++ ++.+|.
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~-~g~~G~  184 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNG-SAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVA-VSSRGS  184 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETT-EEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEE-EETTSS
T ss_pred             CCceECccccCCCCCeEEEEEECCC-CEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEE-EECCCc
Confidence            2222222   233457788877654 4554544 554432 222232222222  234578889998866554 455565


Q ss_pred             EEEE-EC--CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeec----CCCceEEEEEeC
Q 004737          601 ISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHP  673 (732)
Q Consensus       601 I~Iw-Dl--~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~----~~~~I~sl~fsp  673 (732)
                      |+.- |-  .+.+.+.  ......+..+.+.+++.+++++.+|.+++++...+   .....+..    ....+..+.+.+
T Consensus       185 ~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~~~~~~~~~v~~~~  259 (327)
T 2xbg_A          185 FYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLRRNSVGFLDLAYRT  259 (327)
T ss_dssp             EEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTSSCCSCEEEEEESS
T ss_pred             EEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcccCCcceEEEEecC
Confidence            5543 42  3334332  23456789999999998887776888877653222   11111111    223588899998


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEEE-Ec---cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          674 TFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~~~~~-~~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++. +++++.++.| ++....++... +.   .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus       260 ~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          260 PNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             SSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             CCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            776 4555567767 44555555443 22   234578899997544 566777899887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.57  E-value=1.1e-05  Score=89.29  Aligned_cols=233  Identities=9%  Similarity=0.063  Sum_probs=140.2

Q ss_pred             ceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC----cEEEEECCCC
Q 004737          494 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG  568 (732)
Q Consensus       494 ~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg----~I~iWDl~t~  568 (732)
                      ....|+|+| ++..|+++...+.|+.+|+....  +..+.........|+|+++++.++++...++    .+.+++.. +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence            467899998 45667666655889999988644  3444444556889999999876776655333    24434432 3


Q ss_pred             eee--eEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe--CCeE
Q 004737          569 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV  642 (732)
Q Consensus       569 ~~i--~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs--Dg~I  642 (732)
                      ...  ..+........++++|+++.|+++. .++.|..||...+....... ........|+|+|++++|+.+.  .+.|
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            222  2333335577889999545555555 56899999998776522222 1224578999999999776666  6789


Q ss_pred             EEEECCCCCC-ceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCe
Q 004737          643 RVWSIGSGSK-GECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK  696 (732)
Q Consensus       643 ~IWDl~t~~~-~~~i~~~~~~---------------~~~I~-sl~fs--------pdg~~L~sgs-~dg~I~IwDl~t~~  696 (732)
                      .+++...... ...+..+...               -.... .+++.        +++. |+++. ..+.|+.++ .++.
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~  372 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR  372 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence            9988753210 0001111111               01122 45553        3344 55554 456899988 4566


Q ss_pred             EEEEccC------------------CCCeeEEEEeCCCCEEEEEE-CCCeEEEe
Q 004737          697 TLTLSAH------------------DKLVSSLAASTVNGMVASAS-HDKCVKIW  731 (732)
Q Consensus       697 ~~~~~~h------------------~~~V~sla~spdg~~LaSgs-~DG~I~IW  731 (732)
                      ...+.+.                  -.....|++++++..|+.+. ....|+.+
T Consensus       373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            5544332                  12588999999644455444 45667654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.55  E-value=4.5e-05  Score=80.92  Aligned_cols=220  Identities=7%  Similarity=-0.006  Sum_probs=141.8

Q ss_pred             CCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCe-EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737          471 DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  547 (732)
Q Consensus       471 Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~-Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg  547 (732)
                      ...|+.++++...  ....+. ....+..++|.+.... +++-...+.|..+++.........+...-.....+++.+.+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            4678889887653  222222 2235678999985444 45555678999999886532222223223456789998877


Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737          548 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS  624 (732)
Q Consensus       548 ~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~V~s  624 (732)
                      ..++++-...+.|.++++........+ ........+++.|.++.++.+..  .+.|..+++........+...-...+.
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccE
Confidence            778777777889999998754333222 22345788999998888888774  578999998754333223333456789


Q ss_pred             EEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCe
Q 004737          625 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK  696 (732)
Q Consensus       625 la~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~  696 (732)
                      |+|++++..|+.+.  .+.|..+|+..... ..+.  .........+++..+  .++.+. ..+.|..++..+++
T Consensus       171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~--~~~~~~P~glav~~~--~lywtd~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVV--KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGE  240 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE--CSCCSCEEEEEEETT--EEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEe--cCCCCCceEEEEeCC--EEEEEecCCCeEEEEECCCCC
Confidence            99999877777776  67999999875322 2222  223344567777533  344444 45689999986665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.54  E-value=0.00019  Score=75.78  Aligned_cols=219  Identities=9%  Similarity=0.021  Sum_probs=140.0

Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEec-cCCe
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA  580 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~~-~~~i  580 (732)
                      +|+.+. ...|+..|+..... ...+. ....+..++|++.+..++++-..++.|..+++..    ......+.. -...
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~-~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEY-TSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCC-EEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCcce-Eehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            344443 35689999987653 22333 3456789999998778887777789999999876    222222221 2356


Q ss_pred             eEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCCCCceeE
Q 004737          581 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI  656 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~~~~~~i  656 (732)
                      ..+++++.++.|+++. ..+.|.++|+........+.........++++|.+.+|+.+.  . +.|..+++.... ...+
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~  158 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL  158 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence            7899998777776665 468999999986544444443445778999999776665555  3 688888876431 1111


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEc---cCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          657 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~---~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                        ....-.....+++++++..|+.+... +.|..+|+.......+.   ........+++. .+.++++-...+.|..+
T Consensus       159 --~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          159 --VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             --ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             --EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence              12234567899999988888877754 58999999764433322   223456788885 34444444455666654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.53  E-value=0.00023  Score=77.91  Aligned_cols=231  Identities=8%  Similarity=-0.037  Sum_probs=150.8

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecCCCC---ceeEEeecCCcce
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPD---YSLRTFTGHSTTV  538 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~s~~---~~~~~l~~h~~~V  538 (732)
                      .+|+.+. ...|+..+++.......+. ....+..|+|++....|+.+ ...+.|+.+++....   .....+.......
T Consensus        84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            3555544 4689999988765554444 44568899999866655555 456889999987521   1122333234567


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEE
Q 004737          539 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKL  615 (732)
Q Consensus       539 ~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l  615 (732)
                      ..+++.+.+..++++-...+.|.+.++........+. .......+++.|.+++|+.+..  .+.|..+++........+
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            8899998767788777778899999998655444443 2345789999998888887774  378999998765444334


Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEC
Q 004737          616 QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNM  692 (732)
Q Consensus       616 ~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl  692 (732)
                      ...-.....|++++++..|+.+.  .+.|..+|+..... ..+......-.....+++.  +..|+.+. ..+.|..+|.
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEES
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEc
Confidence            43446789999999888777776  66899999875422 2222221222344566663  33455544 4458888886


Q ss_pred             CCCeEE
Q 004737          693 TENKTL  698 (732)
Q Consensus       693 ~t~~~~  698 (732)
                      .+++.+
T Consensus       319 ~~G~~~  324 (400)
T 3p5b_L          319 LTGSDV  324 (400)
T ss_dssp             SSCCCC
T ss_pred             CCCCce
Confidence            666433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.53  E-value=0.00011  Score=78.87  Aligned_cols=228  Identities=9%  Similarity=0.045  Sum_probs=146.0

Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004737          495 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  574 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~  574 (732)
                      .+|.+..++ .+|+.+ ....|+..++.....  ..+......+..++|++.+..++++-...+.|+.+++........+
T Consensus        36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            345555553 344444 344588888876442  3333334458899999887778877777889999999866544433


Q ss_pred             ec-cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCC
Q 004737          575 KC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS  649 (732)
Q Consensus       575 ~~-~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t  649 (732)
                      .. ......+++.+.++.|+.+.. .+.|.++++........+...-.....|+++|.+.+|+...  + +.|..+++..
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            32 234678999987777776665 57999999886544444444445679999999777666655  4 6888888865


Q ss_pred             CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-EccCCCCeeEEEEeCCCCEEEEEECCCe
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC  727 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~-~~~h~~~V~sla~spdg~~LaSgs~DG~  727 (732)
                      ...   .............++|++++..|+.+... +.|+.+|+....... +.........|++. .+.++++-...+.
T Consensus       192 ~~~---~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~  267 (349)
T 3v64_C          192 SGR---RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS  267 (349)
T ss_dssp             CSC---EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CCc---EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence            321   11112233457899999988878877654 589999987654332 33334567788883 3434444334555


Q ss_pred             EEE
Q 004737          728 VKI  730 (732)
Q Consensus       728 I~I  730 (732)
                      |..
T Consensus       268 V~~  270 (349)
T 3v64_C          268 INS  270 (349)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.52  E-value=1.5e-05  Score=92.05  Aligned_cols=251  Identities=9%  Similarity=-0.021  Sum_probs=149.8

Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccCC----CceEE-EEEcCCCCeEEEEe------CCCeEEEEecCCCCceeEEeec
Q 004737          465 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~V~~-l~fspdg~~Lasgs------~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      |++++.|+.|..+|..+|+.+-......    ..+++ ..+. ++ .+++++      .++.|+.+|..+++..-+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            7888889999999999999886654322    01211 1111 34 455554      3899999999998854333222


Q ss_pred             CCc------------------------------------ce-EEEEEcCCCCcEEEEEeCC----------------CcE
Q 004737          534 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI  560 (732)
Q Consensus       534 h~~------------------------------------~V-~sl~fspdg~~llaSgs~D----------------g~I  560 (732)
                      ...                                    .+ ..+++.+....++ .+..+                +.|
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence            110                                    00 1345556644444 44433                479


Q ss_pred             EEEECCCCeeeeEEeccCC----------eeEEEEe-CCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------
Q 004737          561 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK-------  619 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~~----------i~~v~~s-p~g---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-------  619 (732)
                      ..+|.++++.+..+.....          ..-+... .++   ..++.++.+|.++++|.++++.+.......       
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            9999999999887774321          1112222 455   346667789999999999999887654211       


Q ss_pred             ------CCE--------------------------EEEEEeCCCCEEEEEe-----------------------------
Q 004737          620 ------NQV--------------------------HSVCWNTSGEYLASVS-----------------------------  638 (732)
Q Consensus       620 ------~~V--------------------------~sla~spdg~~Lasgs-----------------------------  638 (732)
                            .++                          ..++++|+..++++..                             
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence                  111                          1356777666554431                             


Q ss_pred             -----------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCC-C
Q 004737          639 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K  705 (732)
Q Consensus       639 -----------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~-~  705 (732)
                                 +|.|..||+.+++   .+-.... ..+...-.+...+..+++++.|+.|+.||.++++.+ .+.... .
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~---~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~  516 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGD---YKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCC---EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CCcCCcccCCCcCeEEEEECCCCC---EEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence                       2567788887773   3333221 111221123335667888999999999999999988 443222 2


Q ss_pred             CeeEEEEeCCCC-EEEEE
Q 004737          706 LVSSLAASTVNG-MVASA  722 (732)
Q Consensus       706 ~V~sla~spdg~-~LaSg  722 (732)
                      ...-+.|..+|+ |+++.
T Consensus       517 ~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          517 IGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             CSCCEEEEETTEEEEEEE
T ss_pred             EeccEEEEeCCEEEEEEE
Confidence            223355566776 44443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.52  E-value=7.9e-06  Score=97.08  Aligned_cols=238  Identities=10%  Similarity=0.042  Sum_probs=134.7

Q ss_pred             CeEEEEEc-CCCCEEEEEEC-CC----cEEEEEcCCC-eEEE-EeccCCCceEEEEEcCCCCeEEEEeCC-----CeEEE
Q 004737          452 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV  518 (732)
Q Consensus       452 ~V~~lafS-pdg~~Lasgs~-Dg----~I~VWd~~t~-~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~I  518 (732)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+||++.|+....|     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998886543 22    5999999998 6321 111   123468899999988877765     36888


Q ss_pred             EecCCCCce-eEEee-cCCcceEEEEEcCCCCcEEEEEeC--CCcEEEEECCCC--ee--eeEEec-cCCeeEEEEeCCC
Q 004737          519 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC--AGVFKC-QSGATQMRFQPRL  589 (732)
Q Consensus       519 WDl~s~~~~-~~~l~-~h~~~V~sl~fspdg~~llaSgs~--Dg~I~iWDl~t~--~~--i~~~~~-~~~i~~v~~sp~g  589 (732)
                      +++.++... ...+. ........+.|+||++.++++...  ...|+++|+.++  +.  ...... ......+.|.. +
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            888775422 22332 223456788999999888877643  346888999875  22  222221 12234444433 5


Q ss_pred             CEEEEEEcC-----CeEEEEECCCCeEEEE-EcCCCC--CEEEEEEeCCCCEEEEE-e-CC--eEEEEEC-------CCC
Q 004737          590 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG  650 (732)
Q Consensus       590 ~~ll~~s~d-----g~I~IwDl~t~~~i~~-l~~h~~--~V~sla~spdg~~Lasg-s-Dg--~I~IWDl-------~t~  650 (732)
                      +.|+..+..     ..|.++|+.+...... +..+..  .+..+.+.  +..|+.. . ++  .|.++|+       ..+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g  408 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG  408 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence            666665543     2688888875211111 222333  34455554  4555444 4 77  4666675       232


Q ss_pred             CCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcCC---eEEEEECCCCeEE
Q 004737          651 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCYE---TLELWNMTENKTL  698 (732)
Q Consensus       651 ~~~~~i~~~~~~~-~~I~sl~f----spdg~~L-~sgs~dg---~I~IwDl~t~~~~  698 (732)
                      .   .+..+.... ..+..+.+    ++++..+ ++.+...   .++.+|+.+++..
T Consensus       409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~  462 (751)
T 2xe4_A          409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT  462 (751)
T ss_dssp             T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred             c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence            1   022222111 12233322    3455434 4444332   6888888877654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.50  E-value=4.4e-05  Score=87.90  Aligned_cols=256  Identities=10%  Similarity=0.029  Sum_probs=152.2

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCC----ceE-EEEEcC---CCC-eEEEEe------CCCeEEEEecCCCCc
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-DVRFSP---SLS-RLATSS------ADRTVRVWDTENPDY  526 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----~V~-~l~fsp---dg~-~Lasgs------~Dg~I~IWDl~s~~~  526 (732)
                      +..+++++.|+.|..+|.++|+.+-.......    .+. ...+..   +++ .+++++      .++.|..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45788888999999999999999876643221    111 111111   233 555554      378999999998875


Q ss_pred             eeEEeecCCcc-----------------------------------------eEEEEEcCCCCcEEEEEe----------
Q 004737          527 SLRTFTGHSTT-----------------------------------------VMSLDFHPSKEDLLCSCD----------  555 (732)
Q Consensus       527 ~~~~l~~h~~~-----------------------------------------V~sl~fspdg~~llaSgs----------  555 (732)
                      ... .......                                         -..+++.|+...+++..+          
T Consensus       197 ~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWM-RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEE-EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             Eee-cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            332 2211000                                         012455666444443332          


Q ss_pred             --C-------C----CcEEEEECCCCeeeeEEeccC-------CeeE-EEEe---CCCC---EEEEEEcCCeEEEEECCC
Q 004737          556 --N-------N----SEIRYWSINNGSCAGVFKCQS-------GATQ-MRFQ---PRLG---RILAAAIENYISILDVET  608 (732)
Q Consensus       556 --~-------D----g~I~iWDl~t~~~i~~~~~~~-------~i~~-v~~s---p~g~---~ll~~s~dg~I~IwDl~t  608 (732)
                        .       |    +.|..+|..+++.+..+....       .+.. +.+.   .+++   .+++++.+|.++++|.++
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence              1       2    589999999999998876421       1111 2222   4553   577788899999999999


Q ss_pred             CeEEEEEcCCCC--CE-------------------------------------------EEEEEeCCCCEEEEEe-----
Q 004737          609 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS-----  638 (732)
Q Consensus       609 ~~~i~~l~~h~~--~V-------------------------------------------~sla~spdg~~Lasgs-----  638 (732)
                      ++.+..+.....  ..                                           ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            998876553210  00                                           1245666544444321     


Q ss_pred             -----------------------------CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          639 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       639 -----------------------------Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                                                   +|.|..||+.+++   .+-..... .++..-.+...+..+++++.|+.|+.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~---~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A  511 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK---VVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKA  511 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC---EEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC---EEEEecCC-CCCcccceEeCCCEEEEECCCCcEEE
Confidence                                         4678899998873   33333222 12222222234667888999999999


Q ss_pred             EECCCCeEE-EEccCCCC-eeEEEEeCCCC-EEEEE
Q 004737          690 WNMTENKTL-TLSAHDKL-VSSLAASTVNG-MVASA  722 (732)
Q Consensus       690 wDl~t~~~~-~~~~h~~~-V~sla~spdg~-~LaSg  722 (732)
                      ||.++++.+ .+...... ..-+.|..+|+ ||++.
T Consensus       512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            999999988 44332221 12366667776 44443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.50  E-value=8.5e-05  Score=80.94  Aligned_cols=228  Identities=9%  Similarity=0.031  Sum_probs=147.8

Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe
Q 004737          496 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  575 (732)
Q Consensus       496 ~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~  575 (732)
                      .|.+..+ ..+|+.+ ....|+.+++.....  ..+......+..++|++.+..++++-...+.|+.|++........+.
T Consensus        80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             CEEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             eECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            3444444 3344444 345788888876543  23333345688999998877888777778899999998765444333


Q ss_pred             c-cCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCC
Q 004737          576 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG  650 (732)
Q Consensus       576 ~-~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~  650 (732)
                      . ......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+.  + +.|..+++...
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence            2 234677899987777776665 57899999876544444444446789999999877776666  4 67888888654


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                      .   ..............++|+|++..|+.+... +.|+.+|+...... .+.........|++. .+.++++-...+.|
T Consensus       236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V  311 (386)
T 3v65_B          236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI  311 (386)
T ss_dssp             S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence            2   111222233457899999988878777654 48999998765433 233334567788883 34444444455566


Q ss_pred             EEe
Q 004737          729 KIW  731 (732)
Q Consensus       729 ~IW  731 (732)
                      ..+
T Consensus       312 ~~~  314 (386)
T 3v65_B          312 NSA  314 (386)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.40  E-value=7.5e-05  Score=82.76  Aligned_cols=234  Identities=14%  Similarity=0.121  Sum_probs=138.1

Q ss_pred             ceEEEEEcCC--CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC---C-cEEEEECCC
Q 004737          494 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN  567 (732)
Q Consensus       494 ~V~~l~fspd--g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D---g-~I~iWDl~t  567 (732)
                      ....|+|+|+  ...|+.+...+.|+.+|..++.  +..+.........++|++++. ++++....   . .+..++...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4678999984  4456665544889999987654  444444455689999999987 65554321   1 233333322


Q ss_pred             Cee-eeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEE-c-CCCCCEEEEEEeCCCCEEEEEe--CCe
Q 004737          568 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS--DEL  641 (732)
Q Consensus       568 ~~~-i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~~i~~l-~-~h~~~V~sla~spdg~~Lasgs--Dg~  641 (732)
                      +.. ...+........++++++.+.|+++. .++.|+.+|..++.....+ . +....-..|+|+|++++|+.+.  .+.
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            111 11222234567788999445555544 5688999999877652222 2 1222345799999999777666  678


Q ss_pred             EEEEECCC--CCCc--eeEEEeec------------CCCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          642 VRVWSIGS--GSKG--ECIHELSC------------TGNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTENK  696 (732)
Q Consensus       642 I~IWDl~t--~~~~--~~i~~~~~------------~~~~I~sl~f---------spdg~~L~sgs~dg~I~IwDl~t~~  696 (732)
                      |+.+++..  +...  ..+.....            .-.....+++         .+++.++++-...+.|+.++. ++.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            99988763  2111  11111100            1123566888         566664444445568999985 566


Q ss_pred             EEEEccC------------------CCCeeEEEEe-CCCCEEEEEECCCeEEEe
Q 004737          697 TLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW  731 (732)
Q Consensus       697 ~~~~~~h------------------~~~V~sla~s-pdg~~LaSgs~DG~I~IW  731 (732)
                      ..++.+.                  -.....|+++ +++.++++-...+.|+.+
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            5544322                  1247889999 455544444455677664

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.39  E-value=0.00029  Score=74.59  Aligned_cols=221  Identities=10%  Similarity=0.026  Sum_probs=140.8

Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEEe-ccCCeeEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQM  583 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-~~~~-~~~~i~~v  583 (732)
                      +|+.+ ....|+.+|++...............+..++|++.+..++++-...+.|..+++...... ..+. .-.....+
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl   84 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   84 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence            34443 356799999987542222222223457799999877778877777889999999865322 1222 22456789


Q ss_pred             EEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEEe
Q 004737          584 RFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       584 ~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      ++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+.   .+.|..+++..... ..+  .
T Consensus        85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~--~  161 (318)
T 3sov_A           85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FII--I  161 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEE--E
T ss_pred             EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEE--E
Confidence            99987777766654 57999999886543333434456678999999766666555   35788888764321 111  2


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEE-ccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          660 SCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       660 ~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~-~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ...-.....++|++++..|+.+... +.|+.+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus       162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~  234 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC  234 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence            2223456899999988878877654 5899999875443332 23445677788753 3344443345556544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.39  E-value=0.00012  Score=75.15  Aligned_cols=199  Identities=11%  Similarity=0.148  Sum_probs=130.8

Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE  607 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~  607 (732)
                      .+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+...  .....+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4455667899999999988888888889999999998 8888887643  467888998886544544456789999876


Q ss_pred             CCe---EEEEEc------CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-------cCCCceEEEE
Q 004737          608 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV  670 (732)
Q Consensus       608 t~~---~i~~l~------~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-------~~~~~I~sl~  670 (732)
                      ...   .+....      ........|+|+|.+..|+++. .+...||.+........+....       ..-..+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            543   222221      1234568999999987777766 3334444443110001111111       1234578999


Q ss_pred             EeCCCCEEEEEEcC-CeEEEEECCCCeEE-E--Ec-cC------CCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          671 FHPTFPSLLVIGCY-ETLELWNMTENKTL-T--LS-AH------DKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       671 fspdg~~L~sgs~d-g~I~IwDl~t~~~~-~--~~-~h------~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ++|....+++.+.. ..|.++|.... .+ .  +. +.      -.....|+|.++|++ +..++...++++
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRF  249 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEE
Confidence            99987666666655 48889997655 44 2  22 11      135789999999984 444777766655

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.38  E-value=0.00011  Score=78.42  Aligned_cols=185  Identities=14%  Similarity=0.209  Sum_probs=130.2

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC----CC---eEEEEeC---CCeEEEEecCCCCceeEE
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd----g~---~Lasgs~---Dg~I~IWDl~s~~~~~~~  530 (732)
                      ...+++.....+-+.|||+ +++.+..+..  +.+..|..-|+    ++   ++++...   +++|++|+++.....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3445666667789999999 8888888854  55777776663    22   2333333   579999987522223444


Q ss_pred             eec------CC-cceEEEEE--cCC-CCcEEEEEeCCCcEEEEECC-------CCeeeeEEeccCCeeEEEEeCCCCEEE
Q 004737          531 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFKCQSGATQMRFQPRLGRIL  593 (732)
Q Consensus       531 l~~------h~-~~V~sl~f--spd-g~~llaSgs~Dg~I~iWDl~-------t~~~i~~~~~~~~i~~v~~sp~g~~ll  593 (732)
                      +..      .. ..+..+|+  +|. +..+++....+|.+..|++.       +.+.++.+...+.+..+.+.+..+.|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            421      11 56777887  664 44567788889999999982       346778888888899999999999999


Q ss_pred             EEEcCCeEEEEECC-----CCeEEEEEc-CC-CCCEEEEEEe--CCCC-EEEEEe--CCeEEEEECC
Q 004737          594 AAAIENYISILDVE-----TQVCRLKLQ-GH-KNQVHSVCWN--TSGE-YLASVS--DELVRVWSIG  648 (732)
Q Consensus       594 ~~s~dg~I~IwDl~-----t~~~i~~l~-~h-~~~V~sla~s--pdg~-~Lasgs--Dg~I~IWDl~  648 (732)
                      ++-.+..|..||.+     +.+.+..+. ++ ...+..|++.  ++++ ||++++  ++.+.+||..
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            99999888888866     345565543 22 2368888884  5555 777777  7799999996

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.38  E-value=0.00049  Score=75.27  Aligned_cols=219  Identities=9%  Similarity=0.014  Sum_probs=142.6

Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEEe-ccCCe
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA  580 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~----~~i~~~~-~~~~i  580 (732)
                      +|+.+. ...|+..+++....  ..+......+..++|++.+..++++-...+.|+.+++...    .....+. .....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            444443 46899999986553  2333345678999999987778877777889999998752    2222222 22457


Q ss_pred             eEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeE
Q 004737          581 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI  656 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i  656 (732)
                      ..+++.+.++.|+.+.. .+.|.++|++.......+.........|+++|.+.+|+...   .+.|...++.....   .
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~---~  238 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---Y  238 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC---E
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc---E
Confidence            78999986677776665 67999999987655555544455689999999776666655   36888888875421   1


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          657 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ......-.....+++++++..|+.+... +.|+.+|+.......+..   .-....+|++. .+.++++-...+.|..+
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~  316 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  316 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence            1222233567899999988888888654 589999987655443322   23456677773 23344444444556544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.37  E-value=3.9e-05  Score=91.11  Aligned_cols=192  Identities=10%  Similarity=0.025  Sum_probs=115.0

Q ss_pred             ceEEEEEc-CCCCeEEEEeC-CC----eEEEEecCCC-CceeEEeecCCcceEEEEEcCCCCcEEEEEeCC----CcEEE
Q 004737          494 WITDVRFS-PSLSRLATSSA-DR----TVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY  562 (732)
Q Consensus       494 ~V~~l~fs-pdg~~Lasgs~-Dg----~I~IWDl~s~-~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D----g~I~i  562 (732)
                      .+...+|+ |||++||.+.. +|    .|+++|+.++ ......+.   .....+.|+||++.++++...+    ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 99998886543 22    5999999987 52111121   1235788999998888776532    36888


Q ss_pred             EECCCCeee--eEEec--cCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCC--eE-EEEE-cCCCCCEEEEEEeCCC
Q 004737          563 WSINNGSCA--GVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVETQ--VC-RLKL-QGHKNQVHSVCWNTSG  631 (732)
Q Consensus       563 WDl~t~~~i--~~~~~--~~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~--~~-i~~l-~~h~~~V~sla~spdg  631 (732)
                      +++.++...  ..+..  ..-...+.|+|++++|+....+   ..|+++|+.++  .. +..+ ........++.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            999876422  23322  2235678999999998877643   47889999875  23 1333 3344555666665444


Q ss_pred             CEEEEEe-C--C--eEEEEECCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEE-EEEcCC--eEEEEEC
Q 004737          632 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLL-VIGCYE--TLELWNM  692 (732)
Q Consensus       632 ~~Lasgs-D--g--~I~IWDl~t~~~~~~i~~~~~~~~--~I~sl~fspdg~~L~-sgs~dg--~I~IwDl  692 (732)
                      .+++... +  +  .|.++|+.+......+  +..+..  .+..+.+.  +..|+ +...++  .|+++++
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            4444444 4  2  6777777642111110  112222  34444444  44444 445556  5777785

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=0.00012  Score=81.12  Aligned_cols=234  Identities=11%  Similarity=0.143  Sum_probs=142.0

Q ss_pred             CeEEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC-C----eEEEEecCCCC
Q 004737          452 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R----TVRVWDTENPD  525 (732)
Q Consensus       452 ~V~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D-g----~I~IWDl~s~~  525 (732)
                      ....|+|+| ++..|+++...+.|+++|.+++....... .......|+|++++++|+++... +    .+.+++.. +.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            467899998 45566666555889999998876554443 44568899999999966666542 1    34444433 22


Q ss_pred             ce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEc-CCeE
Q 004737          526 YS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAI-ENYI  601 (732)
Q Consensus       526 ~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~-dg~I  601 (732)
                      .. ...+.. ......++++|++..++++-..++.|+.|+...+.........  .....++|+|++++++++.. .+.|
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            21 122222 2346788999955567767667889999999877653333322  34778999999997766664 6789


Q ss_pred             EEEECCC--CeE--EEEEcCC---------------CCCEE-EEEEe--------CCCCEEEEEe-CCeEEEEECCCCCC
Q 004737          602 SILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSK  652 (732)
Q Consensus       602 ~IwDl~t--~~~--i~~l~~h---------------~~~V~-sla~s--------pdg~~Lasgs-Dg~I~IWDl~t~~~  652 (732)
                      ..++...  +..  +..+.+.               -.... .++..        +++.++++-. .+.|+.++. ++  
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--  371 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--  371 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS--
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC--
Confidence            9987653  221  1111111               11223 45553        2344444433 678998883 33  


Q ss_pred             ceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 004737          653 GECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT  693 (732)
Q Consensus       653 ~~~i~~~~~~------------------~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~  693 (732)
                       . +..+.+.                  -.....+++++++..|+++.. +..|+.++++
T Consensus       372 -~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          372 -R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence             2 2222111                  124678899986445555554 4578777654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.37  E-value=0.00044  Score=82.25  Aligned_cols=239  Identities=8%  Similarity=-0.040  Sum_probs=152.4

Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeE-EEEeCCCeEEEEecCCCC---ceeE
Q 004737          454 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD---YSLR  529 (732)
Q Consensus       454 ~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~L-asgs~Dg~I~IWDl~s~~---~~~~  529 (732)
                      +|.++... .+|+.+ ....|+..++........+. ....+..|+|.+....| ++-...+.|+.+++....   ....
T Consensus       388 ~C~~~~~~-p~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~  464 (791)
T 3m0c_C          388 ACKAVGSI-AYLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT  464 (791)
T ss_dssp             CCEETTSC-CEEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred             eeeecccc-cccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence            34444332 244443 34678888887665544444 44567899999855544 455556889999987531   1122


Q ss_pred             EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC--CeEEEEEC
Q 004737          530 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDV  606 (732)
Q Consensus       530 ~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl  606 (732)
                      .+.........|++.+.+..|+++-...+.|.+.++........+. .-.....|++.|..++|+.+...  +.|.+.++
T Consensus       465 vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence            3332345677899998887888888888999999998554433333 23458899999988888887753  68999999


Q ss_pred             CCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          607 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       607 ~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      ........+...-.....|++++.+..|+.+.  .+.|..+++..... ..+......-.....+++.  +.+|+.+...
T Consensus       545 dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~  621 (791)
T 3m0c_C          545 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDII  621 (791)
T ss_dssp             TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred             CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence            86655444544456789999998877777776  56899999865432 2222211112234455553  3456666544


Q ss_pred             -CeEEEEECCCCeEE
Q 004737          685 -ETLELWNMTENKTL  698 (732)
Q Consensus       685 -g~I~IwDl~t~~~~  698 (732)
                       +.|...|..+++.+
T Consensus       622 ~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          622 NEAIFSANRLTGSDV  636 (791)
T ss_dssp             TTEEEEEETTTCCCC
T ss_pred             CCEEEEEeCCCCcce
Confidence             57888887666433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.28  E-value=0.00098  Score=68.23  Aligned_cols=202  Identities=12%  Similarity=0.082  Sum_probs=135.5

Q ss_pred             EEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCeEEEEec
Q 004737          444 QLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT  521 (732)
Q Consensus       444 ~~l~~H~~~V~~lafSpdg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl  521 (732)
                      +.+.+-.+.+..++|+|++..| ++...++.|...|.. ++.+..+.- .......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            4677777789999999976654 557778899999998 888877642 2245788999998887777667789999988


Q ss_pred             CCCCc--eeEEee------cCCcceEEEEEcCCCCcEEEEEeCCC-cEEEEEC-CCCeeeeEEec--------cCCeeEE
Q 004737          522 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFKC--------QSGATQM  583 (732)
Q Consensus       522 ~s~~~--~~~~l~------~h~~~V~sl~fspdg~~llaSgs~Dg-~I~iWDl-~t~~~i~~~~~--------~~~i~~v  583 (732)
                      .....  .+....      ........|+|+|.+..++++...+. .|+.|+- .....+..+..        -.....+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            76542  112221      13445689999999878887666554 4555551 11112222211        1347899


Q ss_pred             EEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEeCCCCEEEEEeCCeEEEEEC
Q 004737          584 RFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI  647 (732)
Q Consensus       584 ~~sp~g~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~---------~~V~sla~spdg~~LasgsDg~I~IWDl  647 (732)
                      +++|..+.+++.+.+ ..|.++|.... .+..+.-..         ..-..|+|.++|++++++-.+.+++|.-
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            999998888777764 68888997744 444433221         2568999999998666644556666643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.27  E-value=0.00031  Score=77.75  Aligned_cols=235  Identities=10%  Similarity=0.038  Sum_probs=139.6

Q ss_pred             CCeEEEEEcCC--CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC----C-eEEEEecCC
Q 004737          451 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----R-TVRVWDTEN  523 (732)
Q Consensus       451 ~~V~~lafSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g-~I~IWDl~s  523 (732)
                      ....+++|+|+  ...|+.+...+.|+.+|..++....... .......++|+++++ |+.+...    . .+..++...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            34678999985  3455555444899999998877665543 445689999999999 4444432    1 233333332


Q ss_pred             CCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-Eecc--CCeeEEEEeCCCCEEEEEEc-CC
Q 004737          524 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQ--SGATQMRFQPRLGRILAAAI-EN  599 (732)
Q Consensus       524 ~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~-~~~~--~~i~~v~~sp~g~~ll~~s~-dg  599 (732)
                      .......+. .-.....++++|++..++++-..++.|+.+|..++..... +...  .....++|+|++++|+++.. .+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            211111222 2344577889995456665666678899999987766322 2221  12346999999997777665 57


Q ss_pred             eEEEEECC--CCeE--EEEEcCC---------------CCCEEEEEE---------eCCCCEEEEEe-CCeEEEEECCCC
Q 004737          600 YISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       600 ~I~IwDl~--t~~~--i~~l~~h---------------~~~V~sla~---------spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      .|+.+|..  ++..  ...+.+.               -.....+++         .+++.++++-. .+.|++++. ++
T Consensus       296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            89998865  2311  1111111               124677999         66666665554 678999985 33


Q ss_pred             CCceeEEEeecC------------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 004737          651 SKGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMT  693 (732)
Q Consensus       651 ~~~~~i~~~~~~------------------~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~  693 (732)
                          .+..+.+.                  -.....++++|....|+++. .+..|+.++++
T Consensus       375 ----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 ----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                22222211                  12356788884333345444 34577777654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.20  E-value=6.1e-05  Score=87.93  Aligned_cols=228  Identities=7%  Similarity=-0.029  Sum_probs=129.7

Q ss_pred             EEEEcC-CCCeEEEEeCCC-----------eEEEEecCCCCceeE-Ee-ecCCcceEEEEEcCCCCcEEEEEe-CCCcEE
Q 004737          497 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR  561 (732)
Q Consensus       497 ~l~fsp-dg~~Lasgs~Dg-----------~I~IWDl~s~~~~~~-~l-~~h~~~V~sl~fspdg~~llaSgs-~Dg~I~  561 (732)
                      .+++.+ ++++++.|+.+.           .+.+||..++..... .. ..+.....++++..++ .+++.|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence            566777 888888887643           688999988764322 22 1233334456777776 4555665 556899


Q ss_pred             EEECCCCeeeeEEecc--CCeeEEEEeCCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----cCCCCCEEEEEEeC
Q 004737          562 YWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT  629 (732)
Q Consensus       562 iWDl~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s-~d-----g~I~IwDl~t~~~i~~l----~~h~~~V~sla~sp  629 (732)
                      +||..+.+....-...  ..-..+++.++++.+++|+ .+     ..+.+||..+.+....-    ......-....+..
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            9999877654432221  2234556667888888888 34     57999999887644320    00000000011123


Q ss_pred             CCCEEEEEe----------CCeEEEEECCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 004737          630 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE-------  685 (732)
Q Consensus       630 dg~~Lasgs----------Dg~I~IWDl~t~~~~~~i~~~~~------~~~~I~sl~fsp-dg~~L~sgs~dg-------  685 (732)
                      ++..++.++          ...+..||..+............      ....-.++.|.. +++.+++|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            333333332          34678899877632211111111      011224445544 666667776432       


Q ss_pred             ----eEEEEECCCCeEEEEc---cCCCC-eeEEEEeCCCCEEEEEECC
Q 004737          686 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD  725 (732)
Q Consensus       686 ----~I~IwDl~t~~~~~~~---~h~~~-V~sla~spdg~~LaSgs~D  725 (732)
                          .|.+||..+.......   .+... -.++++.+++++++.|+.+
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence                6888998887766443   22222 2445667899999999865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.19  E-value=0.00047  Score=77.22  Aligned_cols=234  Identities=12%  Similarity=0.079  Sum_probs=137.8

Q ss_pred             ceEEEEEcC-CCCeEEEEe-CCCeEEEEecCCCCceeEEeecC----CcceEEEEE-------cCCCCcEEEEEeCCC--
Q 004737          494 WITDVRFSP-SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS--  558 (732)
Q Consensus       494 ~V~~l~fsp-dg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h----~~~V~sl~f-------spdg~~llaSgs~Dg--  558 (732)
                      ....|+|+| +...|+.+. ..+.|++.|+.++.  +..+..-    ......|+|       ++++..++++...++  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            467899998 344455544 34678888888754  3333221    235789999       999876776665542  


Q ss_pred             ----cEEEEECCC-Ceee-----eEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 004737          559 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC---------  611 (732)
Q Consensus       559 ----~I~iWDl~t-~~~i-----~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~-------t~~~---------  611 (732)
                          .|.+++... +...     ..+........++++|+++.|+++. .++.|+.||+.       ++..         
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence                266776443 2221     2222224567789999767766665 46789999987       4432         


Q ss_pred             -----EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCC----ceeEEEeecCC------------CceE-
Q 004737          612 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTG------------NKFH-  667 (732)
Q Consensus       612 -----i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~----~~~i~~~~~~~------------~~I~-  667 (732)
                           +..+ +.......|+|+|++++|+.+.  ...|+.++......    ...+.......            .... 
T Consensus       298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence                 2222 2334568999999999766665  66899876543211    01111110000            1233 


Q ss_pred             EEEEe-------CCCCEEEEEEcCCeEEEEECCCCeEEEEccC------------------------CCCeeEEEEeCCC
Q 004737          668 SCVFH-------PTFPSLLVIGCYETLELWNMTENKTLTLSAH------------------------DKLVSSLAASTVN  716 (732)
Q Consensus       668 sl~fs-------pdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h------------------------~~~V~sla~spdg  716 (732)
                      .++..       .++.++++=..+..|+.++ .++...++.+.                        -.....|++++++
T Consensus       377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            44554       4455444444556899998 56666555332                        1246789999973


Q ss_pred             CEEEEEE-CCCeEEEe
Q 004737          717 GMVASAS-HDKCVKIW  731 (732)
Q Consensus       717 ~~LaSgs-~DG~I~IW  731 (732)
                      ..|+.+. ...+|+.+
T Consensus       456 g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          456 EMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             TEEEEEETTTTEEEEE
T ss_pred             CEEEEEeCCCCEEEEE
Confidence            4444444 55677765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.12  E-value=0.0025  Score=75.70  Aligned_cols=216  Identities=9%  Similarity=0.029  Sum_probs=139.7

Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEEe-ccCCe
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA  580 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~----~~i~~~~-~~~~i  580 (732)
                      +|+.+ ....|+..++.....  ..+......+..|+|++.+..++++-...+.|+.+++...    .....+. .-...
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            34443 445688888876543  3333345678899999877778877777788999998753    2222332 22457


Q ss_pred             eEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCCCCceeE
Q 004737          581 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI  656 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~~~~~~i  656 (732)
                      ..+++.+.++.|+++.. .+.|.++++........+.........|+++|.+.+|+...  + +.|.+.++...   ...
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~  550 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY  550 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence            78999988877777765 57999999987655444444556689999999866666655  3 67888888654   222


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEE-CCCeEE
Q 004737          657 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK  729 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs-~DG~I~  729 (732)
                      ..+...-.....|++++....|+.+... ..|..+++.......+..   .-....+|++.  +.+|+.+. ..+.|.
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~  626 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF  626 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence            2222334568899999888888887654 489999997665443322   22345566664  33455444 334444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.11  E-value=0.0024  Score=73.98  Aligned_cols=219  Identities=9%  Similarity=0.009  Sum_probs=144.8

Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR  584 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~  584 (732)
                      +|+.+ ....|+..|++............-..+..|+|++.+..++++-..++.|+.+++........+... .....++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            44444 456899999987553222222233468899999988888878778899999999765444444322 3577899


Q ss_pred             EeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeEEEee
Q 004737          585 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       585 ~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      +.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+...   .+.|...++..... ..+.   
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~---  162 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLV---  162 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE---
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEE---
Confidence            9988787777665 57899999976543333333445678999999666666555   45788888765422 2221   


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEe
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIW  731 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~d-g~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IW  731 (732)
                      ........+++++++..|+.+... +.|..+|+.......+.........+++.. + .|+.+. ..+.|...
T Consensus       163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERA  233 (628)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEE
T ss_pred             CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEE
Confidence            244567899999988888887764 489999987654443333444567888764 3 444444 35566543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0012  Score=73.80  Aligned_cols=241  Identities=14%  Similarity=0.137  Sum_probs=144.2

Q ss_pred             CeEEEEEcC-CCC-EEEEEECCCcEEEEEcCCCeEEEEeccC---CCceEEEEE-------cCCCCeEEEEeCCC-----
Q 004737          452 KVESCHFSP-DGK-LLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR-----  514 (732)
Q Consensus       452 ~V~~lafSp-dg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---~~~V~~l~f-------spdg~~Lasgs~Dg-----  514 (732)
                      ....|+|+| +.. ++++....+.|++.|.+++.....+...   ......|+|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            367899998 344 4444444578999999887776655432   235899999       99999777776554     


Q ss_pred             --eEEEEecCC-CCce----eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC-------CCee----------
Q 004737          515 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC----------  570 (732)
Q Consensus       515 --~I~IWDl~s-~~~~----~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-------t~~~----------  570 (732)
                        .|.+++... +...    ...+... .....++++|++..|+++...++.|..+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              256665443 1221    0222222 2456788999777888888888999999997       5543          


Q ss_pred             -e-eEEec--cCCeeEEEEeCCCCEEEEEEc-CCeEEEEEC--CCCeEE--EEEcC---CC------------CCEE-EE
Q 004737          571 -A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVCR--LKLQG---HK------------NQVH-SV  625 (732)
Q Consensus       571 -i-~~~~~--~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl--~t~~~i--~~l~~---h~------------~~V~-sl  625 (732)
                       . ..+..  ......++|+|+++.++++.. ...|+.+|.  .++...  ..+.+   ..            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             1 11222  233678999999997666665 578888654  333220  12211   11            1234 45


Q ss_pred             EEe-------CCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC------------------------CCceEEEEEeC
Q 004737          626 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP  673 (732)
Q Consensus       626 a~s-------pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~------------------------~~~I~sl~fsp  673 (732)
                      +..       .++.++++-. ...|+.++. ++    .+.++.+.                        -.....+++++
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence            554       3455554444 679999983 33    22222221                        12356788888


Q ss_pred             CCCEEEEEEc-CCeEEEEECCCCeEE
Q 004737          674 TFPSLLVIGC-YETLELWNMTENKTL  698 (732)
Q Consensus       674 dg~~L~sgs~-dg~I~IwDl~t~~~~  698 (732)
                      +...|+++.. +..|+.++++.....
T Consensus       454 ~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCccc
Confidence            6334555554 447888887665544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.05  E-value=0.00092  Score=71.74  Aligned_cols=225  Identities=8%  Similarity=0.068  Sum_probs=121.8

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEec---cCCCceEEEEEcCC---CCeEEEEeC-C-----CeE
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RTV  516 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~---~h~~~V~~l~fspd---g~~Lasgs~-D-----g~I  516 (732)
                      ..-.+++|.|||+++++ ..++.|++++  +++..  ..+.   ........|+|+|+   +..|+++.. +     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            35779999999985554 5679999998  44422  2221   22356889999998   555555443 2     578


Q ss_pred             EEEecCCCCc-----eeEEee---cCCcceEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC-------
Q 004737          517 RVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG-------  568 (732)
Q Consensus       517 ~IWDl~s~~~-----~~~~l~---~h~~~V~sl~fspdg~~llaSgs~-------------Dg~I~iWDl~t~-------  568 (732)
                      ..|+......     .+..+.   +.......++|.|+|. ++++.+.             .|.|..++....       
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            8888764321     111122   1112346899999984 4444321             245666665420       


Q ss_pred             -----eeeeEEe-ccCCeeEEEEeCCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEcC
Q 004737          569 -----SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQG  617 (732)
Q Consensus       569 -----~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~d-g~--------I~IwDl~t----------------~~~i~~l~~  617 (732)
                           .....+. .......++|+|+.+.|+++... +.        |.+.....                ..++..+. 
T Consensus       187 ~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-  265 (352)
T 2ism_A          187 LGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-  265 (352)
T ss_dssp             TTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred             cCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-
Confidence                 1111111 22336778999954555555443 22        33332111                01222222 


Q ss_pred             CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737          618 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       618 h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~---~~i~~~~~~~~~I~sl~fspdg~~L~sg  681 (732)
                      +......++| .+|.++++.. .+.|...++......   .....+......+..+++.|||..+++.
T Consensus       266 ~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          266 QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence            2234567777 4565555444 667888877643210   0112222234678899999999755444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.05  E-value=0.0015  Score=75.73  Aligned_cols=223  Identities=7%  Similarity=-0.006  Sum_probs=137.7

Q ss_pred             CCCcEEEEEcCCCe-EEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCC
Q 004737          470 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  547 (732)
Q Consensus       470 ~Dg~I~VWd~~t~~-~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg  547 (732)
                      ....|++.++.... ....+...-..+..++|++.+..|+.+. ..+.|..++++........+...-.....+++.+.+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            35678888887643 2222233445678999998766666554 467899999875432122333333568899999987


Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEE
Q 004737          548 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS  624 (732)
Q Consensus       548 ~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~V~s  624 (732)
                      ..++++-...+.|.+.++........+ ..-.....+++.|.+++++.+..  .+.|...++............-.....
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G  175 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  175 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence            788878778899999999854433333 22345788999998888888775  367888887754333333334557899


Q ss_pred             EEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeE
Q 004737          625 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKT  697 (732)
Q Consensus       625 la~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~  697 (732)
                      |++++++..|+.+.  .+.|..+|+........+.   ........+++..+  .|+.+. ..+.|...|..+++.
T Consensus       176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK---GSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe---CCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            99999877777776  5689999987542211111   11122235566544  455554 345888888877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.02  E-value=0.0068  Score=70.08  Aligned_cols=277  Identities=8%  Similarity=-0.012  Sum_probs=161.1

Q ss_pred             CCCeEEEEEcCCCCEEEE-EECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC--CCeEEEEecCCCCc
Q 004737          450 TSKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDY  526 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Las-gs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~--Dg~I~IWDl~s~~~  526 (732)
                      -.....+++.+.+..|+. -...+.|.+.+++.......+...-.....|++.|.+.+|+.+..  .+.|...+++....
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  162 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence            356889999996665544 456789999998765443334344456789999997666665554  35677777764332


Q ss_pred             eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEc-CCeEEEE
Q 004737          527 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISIL  604 (732)
Q Consensus       527 ~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~-dg~I~Iw  604 (732)
                       .......-.....|++++++..++++-...+.|..+|+.......... .-.....+++..+  .++.+.. .+.|...
T Consensus       163 -~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~  239 (619)
T 3s94_A          163 -FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILAC  239 (619)
T ss_dssp             -EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEE
T ss_pred             -EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEE
Confidence             222222345678999999877787776777889999987544333222 1123455666554  5555554 5788888


Q ss_pred             ECCCCeEEEEEcC-----------CC--------------CCEEEEE-----------EeCCC---------------CE
Q 004737          605 DVETQVCRLKLQG-----------HK--------------NQVHSVC-----------WNTSG---------------EY  633 (732)
Q Consensus       605 Dl~t~~~i~~l~~-----------h~--------------~~V~sla-----------~spdg---------------~~  633 (732)
                      |..+++....+..           |.              +....+|           .+|.|               .+
T Consensus       240 d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~  319 (619)
T 3s94_A          240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL  319 (619)
T ss_dssp             ESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE
T ss_pred             ECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceE
Confidence            8876643322211           00              0000111           12211               24


Q ss_pred             EEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEE-EccCCCCeeEEE
Q 004737          634 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLT-LSAHDKLVSSLA  711 (732)
Q Consensus       634 LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~~-~~~h~~~V~sla  711 (732)
                      |+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++....... +...-..+..++
T Consensus       320 Ll~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA  398 (619)
T 3s94_A          320 LLLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA  398 (619)
T ss_dssp             EEEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence            555555667777776543211111111 1234678999997777777765 5689999987654332 223335678899


Q ss_pred             EeCCCCEEEEEE-CCCeEEE
Q 004737          712 ASTVNGMVASAS-HDKCVKI  730 (732)
Q Consensus       712 ~spdg~~LaSgs-~DG~I~I  730 (732)
                      +...++.|+.+. ..+.|.+
T Consensus       399 vD~~~~~lY~tD~~~~~I~v  418 (619)
T 3s94_A          399 VDWVARNLYWTDTGTDRIEV  418 (619)
T ss_dssp             EETTTTEEEEEETTTTEEEE
T ss_pred             EecccCcEEEEeCCCCcEEE
Confidence            987665555444 4455554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.00  E-value=0.028  Score=61.23  Aligned_cols=248  Identities=9%  Similarity=0.146  Sum_probs=155.7

Q ss_pred             CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcE
Q 004737          471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  550 (732)
Q Consensus       471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~l  550 (732)
                      +..|.|.|+.....+.+-.-.   .-+.-.+|..+.||.=. ..++.|+|+++.. .++.+.- ...|..-.|-.+. .+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~-klks~~~-~e~VvfWkWis~~-~l  119 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHTM-TDDVTFWKWISLN-TV  119 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTE-EEEEEEC-SSCCCEEEEEETT-EE
T ss_pred             CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhh-hhcceec-CCCceEEEecCCC-eE
Confidence            347888998875544222111   12334678777777665 7799999999855 3555543 3467777887653 33


Q ss_pred             EEEEeCCCcEEEEECCC-CeeeeEEecc-----CCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004737          551 LCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG  617 (732)
Q Consensus       551 laSgs~Dg~I~iWDl~t-~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~  617 (732)
                      .+.+  +..|+.|++.. ..+.+.+..+     ..|.....+++.++++..+-       .|.+.+|..+.+. -..+++
T Consensus       120 ~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG  196 (494)
T 1bpo_A          120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  196 (494)
T ss_dssp             EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred             EEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence            3333  66899999974 4566666533     34777888999999876553       4678899988653 345667


Q ss_pred             CCCCEEEEEEeCC---CCEEEEEe----CCeEEEEECCCCC-----CceeEEEee----cCCCceEEEEEeCCCCEEEEE
Q 004737          618 HKNQVHSVCWNTS---GEYLASVS----DELVRVWSIGSGS-----KGECIHELS----CTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       618 h~~~V~sla~spd---g~~Lasgs----Dg~I~IWDl~t~~-----~~~~i~~~~----~~~~~I~sl~fspdg~~L~sg  681 (732)
                      |......+.+..+   ..+++.+.    .++++|.++....     ..+....+.    ....--.++.+++....++..
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            7554444433221   12444444    2699999996531     111111111    123445678899999999999


Q ss_pred             EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                      +..|.|++||++++.++ .-.-....|...+.+....=++.....|.|
T Consensus       277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence            99999999999999988 333344455555555444444545566654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.00  E-value=0.0083  Score=69.48  Aligned_cols=224  Identities=8%  Similarity=-0.010  Sum_probs=149.6

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEE
Q 004737          464 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  541 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl  541 (732)
                      +|+.+ ....|+..++++......+. ..-..+..|+|++....|+ +-..++.|..++++.... ...+.........+
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence            44444 45789999998765443332 2234688999998665555 445678999999876432 22333223457789


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE-eccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCC
Q 004737          542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH  618 (732)
Q Consensus       542 ~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~-~~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h  618 (732)
                      ++.+.+..++++-...+.|.+.++........+ ..-.....+++.|..+.|+.+..  .+.|...++........+. .
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~  164 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N  164 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence            998877788877777889999999754332222 22345789999998888888774  4688888887654333333 4


Q ss_pred             CCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 004737          619 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN  695 (732)
Q Consensus       619 ~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~  695 (732)
                      -.....|++++++..|+.+.  .+.|..+|+..... +.+   .........+++..  ..|+.+.. .+.|...|..++
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~---~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVI---ADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE---EECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEe---eccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence            56788999999888777777  67999999976432 222   22233455777765  35666654 568988887665


Q ss_pred             e
Q 004737          696 K  696 (732)
Q Consensus       696 ~  696 (732)
                      +
T Consensus       239 ~  239 (628)
T 4a0p_A          239 Q  239 (628)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.98  E-value=0.0019  Score=68.38  Aligned_cols=230  Identities=11%  Similarity=0.044  Sum_probs=130.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec---cCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCC-CC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PD  525 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s-~~  525 (732)
                      ...+.+|.|.+ +..++ ++.++.|.. ..+.++.-..+.   .+...+..|.+.+++..++++ .++.|  |...+ +.
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGK  152 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTS
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCC
Confidence            44688999976 44444 455665443 333344333332   234567888887776666555 45543  22222 22


Q ss_pred             ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE-EEC--CCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEE
Q 004737          526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS  602 (732)
Q Consensus       526 ~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i-WDl--~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~  602 (732)
                      .-......+...+..+.+.+++ .+++.+. +|.|+. +|-  .+.+.+. ......+..+.+.+++. +++++.+|.++
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~  228 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIA  228 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEE
Confidence            1122233455678999999875 4554554 454443 342  2222221 12235577888888865 55667788887


Q ss_pred             EEECCCCeEEEEEcC----CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          603 ILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       603 IwDl~t~~~i~~l~~----h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                      +.+...++.-..+..    +...+.++++.+++.+++++.++.| ++....+.....+.........++.+.|.+++ .+
T Consensus       229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~  306 (327)
T 2xbg_A          229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QG  306 (327)
T ss_dssp             EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EE
T ss_pred             EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ce
Confidence            765333333222221    2235889999998888888778877 45555553322221111123567888887555 47


Q ss_pred             EEEEcCCeEEEEE
Q 004737          679 LVIGCYETLELWN  691 (732)
Q Consensus       679 ~sgs~dg~I~IwD  691 (732)
                      ++++.+|.|..++
T Consensus       307 ~~~G~~G~i~~~~  319 (327)
T 2xbg_A          307 FILGQKGILLRYV  319 (327)
T ss_dssp             EEECSTTEEEEEC
T ss_pred             EEEcCCceEEEEc
Confidence            7888888877765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.96  E-value=1.5e-05  Score=93.80  Aligned_cols=226  Identities=8%  Similarity=-0.022  Sum_probs=136.6

Q ss_pred             CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCC---CceeEEeecCCcceEEEEEcCC
Q 004737          471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS  546 (732)
Q Consensus       471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~---~~~~~~l~~h~~~V~sl~fspd  546 (732)
                      .+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++...   ......+.........|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            46788888887665544433 34567899998766666554 4578999998751   1111222112233567888866


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC--CeEEEEECCCCeEEEEEcCCCCCEE
Q 004737          547 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       547 g~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d--g~I~IwDl~t~~~i~~l~~h~~~V~  623 (732)
                      +..++++-...+.|.++++........+.. ......++++|.+++|+.+...  +.|.++++........+...-...+
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            667776666678899999876544333332 2446788999987777766542  6888888764332222222234567


Q ss_pred             EEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEE
Q 004737          624 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL  700 (732)
Q Consensus       624 sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~  700 (732)
                      .|+|++++..|+.+.  .+.|.++++..... ..+............+++..+  .|+.+. ..+.|..++..+++.+..
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence            899999876666655  66899999875321 222111111122344555443  455444 456899999888877633

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.93  E-value=0.0063  Score=65.27  Aligned_cols=230  Identities=10%  Similarity=0.052  Sum_probs=125.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe-EEEEec---cCCCceEEEEEcCC---CCeEEEEeC----C----C
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R  514 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~-~~~~l~---~h~~~V~~l~fspd---g~~Lasgs~----D----g  514 (732)
                      -....+++|.|||++++ +..++.|++++ .+++ .+..+.   ........|+|+|+   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999997544 56679999997 4454 222221   22356889999997   555555433    3    5


Q ss_pred             eEEEEecCCCC--c----ee-EEeec-CCcceEEEEEcCCCCcEEEEEeC------------CCcEEEEECCCCe-----
Q 004737          515 TVRVWDTENPD--Y----SL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGS-----  569 (732)
Q Consensus       515 ~I~IWDl~s~~--~----~~-~~l~~-h~~~V~sl~fspdg~~llaSgs~------------Dg~I~iWDl~t~~-----  569 (732)
                      .|..|+.....  .    .+ ..+.. .......|+|.|+|..++..++.            .|.|..++....-     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            67777776531  1    11 11221 11234679999998544433321            2456666654220     


Q ss_pred             --eeeEE-eccCCeeEEEEeCCCCEEEEEEcCC----eEEEEECCC--------C--------eEEEEEcCCCCCEEEEE
Q 004737          570 --CAGVF-KCQSGATQMRFQPRLGRILAAAIEN----YISILDVET--------Q--------VCRLKLQGHKNQVHSVC  626 (732)
Q Consensus       570 --~i~~~-~~~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~t--------~--------~~i~~l~~h~~~V~sla  626 (732)
                        ....+ ........++|+++.+.|+++....    .|.+...-.        +        .++..+.........++
T Consensus       186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence              01111 1234567899999555566655432    344433211        0        12223311234577888


Q ss_pred             Ee-------CCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 004737          627 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       627 ~s-------pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~L~sg  681 (732)
                      |.       .+|.++++.. .+.|...++...........+ ......+..+++.|||..+++.
T Consensus       266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            84       4666665554 678888888753211111222 2224578899999999644443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.90  E-value=0.039  Score=68.28  Aligned_cols=167  Identities=10%  Similarity=0.020  Sum_probs=105.3

Q ss_pred             cEEEEECCCCeeeeEEeccCC--eeEEEEe---CC-CCEEEEEE----------cCCeEEEEECCCCeEEEEE-cCCCCC
Q 004737          559 EIRYWSINNGSCAGVFKCQSG--ATQMRFQ---PR-LGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQ  621 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~~~--i~~v~~s---p~-g~~ll~~s----------~dg~I~IwDl~t~~~i~~l-~~h~~~  621 (732)
                      .|+++|..+.+.+..+.....  +.+++..   .+ ..++++|+          ..|.|++|++..++..... ...++.
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            477788887777766664433  4444432   22 36777777          2478999998755332222 124678


Q ss_pred             EEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCeEEE
Q 004737          622 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTLT  699 (732)
Q Consensus       622 V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t~~~~~  699 (732)
                      |++++-- +| +|+++-..+|++|++...+...  ...... ..|..+.....+.++++|..-..|.+  |+...++...
T Consensus       888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~-~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~  962 (1158)
T 3ei3_A          888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHY-NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE  962 (1158)
T ss_dssp             EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEEC-CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred             CEEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeecc-ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence            9988754 34 6777778899999998653222  111111 12333334345778999988886665  5555666664


Q ss_pred             Ec--cCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          700 LS--AHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       700 ~~--~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      +.  .+..+++++.|-.+ ..++.+..+|.|.+.
T Consensus       963 ~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl  995 (1158)
T 3ei3_A          963 IARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC  995 (1158)
T ss_dssp             EEECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred             EEeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence            43  45667888888654 467778999999875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.88  E-value=0.0044  Score=65.48  Aligned_cols=202  Identities=9%  Similarity=0.108  Sum_probs=125.2

Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCeEEEE-ecc----CC--CceEEEEE---cCCCCeEEEEe----
Q 004737          447 PASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS----  511 (732)
Q Consensus       447 ~~H~~~V~~lafSpdg~~Lasgs-~Dg~I~VWd~~t~~~~~~-l~~----h~--~~V~~l~f---spdg~~Lasgs----  511 (732)
                      +...---.|++|.+....|..++ ..++|..||...+..... +.+    ..  ..+..|.|   .++++++++..    
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            33344456789987555555555 789999999986544333 322    11  14689999   68877777544    


Q ss_pred             ---------CCCeEEEEecC---CCCceeE-EeecC-----------CcceEEEEEcCCCCcEEEEEeCC-CcEEEEECC
Q 004737          512 ---------ADRTVRVWDTE---NPDYSLR-TFTGH-----------STTVMSLDFHPSKEDLLCSCDNN-SEIRYWSIN  566 (732)
Q Consensus       512 ---------~Dg~I~IWDl~---s~~~~~~-~l~~h-----------~~~V~sl~fspdg~~llaSgs~D-g~I~iWDl~  566 (732)
                               .+..|..||+.   +++.... .+...           ...+..++..++|+.++ +++.. +.|..++..
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSAD  167 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCC
Confidence                     26789999998   6553222 22111           12478999999986555 66666 777777776


Q ss_pred             CCeeeeEEec-c------CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-EEEEc--CC---CCCEEEE-EEeCCCC
Q 004737          567 NGSCAGVFKC-Q------SGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQ--GH---KNQVHSV-CWNTSGE  632 (732)
Q Consensus       567 t~~~i~~~~~-~------~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-i~~l~--~h---~~~V~sl-a~spdg~  632 (732)
                      .. .+..+.. .      .+.+.+++.|++..|++....+.|..+|+.+... ...+.  +.   -.....| ..-.+|+
T Consensus       168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred             CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence            43 2222221 1      2366899999999999998899999999885432 01111  21   1223443 3334777


Q ss_pred             EEEEEe--CCeEEEEECCCC
Q 004737          633 YLASVS--DELVRVWSIGSG  650 (732)
Q Consensus       633 ~Lasgs--Dg~I~IWDl~t~  650 (732)
                      .|+++.  .+.+.+.+....
T Consensus       247 vllV~~~~~~~~~l~S~DgW  266 (334)
T 2p9w_A          247 SVLVGARAPYAISFRSWDNW  266 (334)
T ss_dssp             EEEEEEETTEEEEEECSSTT
T ss_pred             EEEEEcCCCCEEEEECCCCc
Confidence            755554  556666665543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.86  E-value=0.0026  Score=68.35  Aligned_cols=186  Identities=9%  Similarity=0.067  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCeEEEE------------eCCCeEEEEecCCCCceeE--Eeec-----CCcceEEEEEcC--CCCc-EEE
Q 004737          495 ITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKED-LLC  552 (732)
Q Consensus       495 V~~l~fspdg~~Lasg------------s~Dg~I~IWDl~s~~~~~~--~l~~-----h~~~V~sl~fsp--dg~~-lla  552 (732)
                      ..++.+.++|..++++            ..+|.|.++|..+......  .+.+     .......|.+.+  ++.. +++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            4555666665444443            2689999999974322222  2222     234567777766  3443 443


Q ss_pred             EEeC--CCcEEEEECCCC--eee--eEEec--cCCeeEEEEeCCCCEEEEEE-----------------cCCeEEEEECC
Q 004737          553 SCDN--NSEIRYWSINNG--SCA--GVFKC--QSGATQMRFQPRLGRILAAA-----------------IENYISILDVE  607 (732)
Q Consensus       553 Sgs~--Dg~I~iWDl~t~--~~i--~~~~~--~~~i~~v~~sp~g~~ll~~s-----------------~dg~I~IwDl~  607 (732)
                      +-..  +..|.+|++...  ...  ..+..  -.....+.+.++|.++++..                 ..|.|+.||..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4333  457777776543  222  22222  12378899999977665543                 12567777664


Q ss_pred             CCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcC
Q 004737          608 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCY  684 (732)
Q Consensus       608 t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp-dg~~L~sgs~d  684 (732)
                      +  ... +...-...+.|+|+||+++|+.+.  .+.|..|++...........+ ......-.+++.+ +|.+++++..+
T Consensus       212 ~--~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          212 D--VRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             C--CEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             e--EEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            2  222 222234578999999999888877  779999998743222222233 2356678889999 58866655534

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.85  E-value=0.032  Score=65.78  Aligned_cols=264  Identities=11%  Similarity=0.079  Sum_probs=154.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      ...|.++....+| .|..|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+...  .
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~  134 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T  134 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence            3568998887776 566666654 789998876543311112335777754 344 56666666 588888876542  3


Q ss_pred             Eee-----cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------cCCeeEEEEeCCCCEEEEEEcC
Q 004737          530 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       530 ~l~-----~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~------~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      .+.     .....|.++....++...+  +..+ -|..||..+++.......      ...|.++....+++.|.+++. 
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTCCEEE--EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             EeccCCCCcCCCeEEEEEEcCCCCEEE--EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence            331     1134588888777654333  3434 488889877654322111      123677877777776666664 


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP  673 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~-----~~~~~~I~sl~fsp  673 (732)
                      +.|..||..+++...........|.+++...+|.+.+.. ++-+.+++..+... ..+...     .-....|.++....
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence            578899988775432211123458888888888877654 55688888766421 111100     01234588888888


Q ss_pred             CCCEEEEEEcCCeEEEEECCCC-eEEEEc-----cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          674 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~-~~~~~~-----~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      ++. |.+|+..| +.++..... +.....     .....|.++....++.+.+ |+.+|.++
T Consensus       289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl~~  347 (758)
T 3ott_A          289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANGLIR  347 (758)
T ss_dssp             TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTEEEE
T ss_pred             CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCccee
Confidence            887 66666666 555433221 111111     1234688888777776554 44555433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.82  E-value=0.0038  Score=66.52  Aligned_cols=180  Identities=11%  Similarity=0.182  Sum_probs=119.1

Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCC----CCE--EEEEE-c---CCeEEEEEC--CCCeEEEEEc
Q 004737          549 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGR--ILAAA-I---ENYISILDV--ETQVCRLKLQ  616 (732)
Q Consensus       549 ~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~----g~~--ll~~s-~---dg~I~IwDl--~t~~~i~~l~  616 (732)
                      .+++.....+-+.+||+ .++.+..+.. +.+..+.+-|.    +..  +++++ .   ++.|.+|++  .++. +..+.
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~  117 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT  117 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence            34556677888999999 7888887754 56777777663    221  33333 3   478999976  3443 44442


Q ss_pred             C------CC-CCEEEEEE--eCC-CC-EEEEEe-CCeEEEEECCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          617 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       617 ~------h~-~~V~sla~--spd-g~-~Lasgs-Dg~I~IWDl~t~----~~~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      .      .. ..+..+|+  ++. +. |+++.. +|.+..|++...    ...+.+.++.. ...+..|++.+....|++
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence            1      11 55677888  674 54 455555 899999998432    12345666654 567899999999999999


Q ss_pred             EEcCCeEEEEECC-----CCeEEEEcc---CCCCeeEEEEe--CCCC-EEEEEE-CCCeEEEeC
Q 004737          681 IGCYETLELWNMT-----ENKTLTLSA---HDKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK  732 (732)
Q Consensus       681 gs~dg~I~IwDl~-----t~~~~~~~~---h~~~V~sla~s--pdg~-~LaSgs-~DG~I~IWD  732 (732)
                      +-++..|..|+.+     +++.+...+   ....+..|++-  ++++ +|++++ .+..+.|||
T Consensus       197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            9999888888865     344553332   22478888884  4555 666666 566777775

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.81  E-value=0.0062  Score=65.19  Aligned_cols=224  Identities=12%  Similarity=0.070  Sum_probs=122.8

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eEEe---ecCCcceEEEEEcCC---CCcEEEEEeCC-----CcE
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI  560 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l---~~h~~~V~sl~fspd---g~~llaSgs~D-----g~I  560 (732)
                      .....++|.|+|++++ +..++.|.+++  ++... +..+   .........|+|+|+   +..++++....     ..|
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4568999999998555 45679999998  33211 1111   112356789999998   55665554432     678


Q ss_pred             EEEECCCCee-----e-eEEec----cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 004737          561 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ--------  609 (732)
Q Consensus       561 ~iWDl~t~~~-----i-~~~~~----~~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~--------  609 (732)
                      ..|+...+..     + ..+..    ......++|.|++..+++.+.             .|.|..+|....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            8888764321     1 11221    112468999999865555432             256777776531        


Q ss_pred             ------eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeE------EEEECCCCCC---------------ceeEEEee
Q 004737          610 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS  660 (732)
Q Consensus       610 ------~~i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I------~IWDl~t~~~---------------~~~i~~~~  660 (732)
                            ..+.. .++ .....++|+| ++.++++-. .+.+      .|.-+..+..               ...+..+.
T Consensus       188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                  01111 122 2356789999 666655544 2221      2333222210               11222232


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe-------EEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~-------~~~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                       .......++| .++..+++.-..+.|...+++...       ...+......+..+++.|||.++++..
T Consensus       266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence             2234556777 355544443344577777765432       122223346799999999998776654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.79  E-value=0.025  Score=69.91  Aligned_cols=271  Identities=11%  Similarity=0.080  Sum_probs=148.2

Q ss_pred             CCCeEEEEEcCC------CCEEEEEEC-CCcEEEEEcCCCeEEEEecc-CCCceEEEEEc--CCCCeEEEEeCCCeEEEE
Q 004737          450 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW  519 (732)
Q Consensus       450 ~~~V~~lafSpd------g~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~-h~~~V~~l~fs--pdg~~Lasgs~Dg~I~IW  519 (732)
                      ...|.|+++.+.      ++++|+|.. |++|+|+++.+.+.+....- ......++.+.  ....+|..|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      469999996 99999999998777654321 11233444332  234578899999998766


Q ss_pred             ecC--CCCcee-E-EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEeccCCe-eEEEEeCC--CCE
Q 004737          520 DTE--NPDYSL-R-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGA-TQMRFQPR--LGR  591 (732)
Q Consensus       520 Dl~--s~~~~~-~-~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~~~i-~~v~~sp~--g~~  591 (732)
                      .++  ++...- + .+.| ..++.-..|...+..-+++++ +....+|.-. ++... .+.. ..+ ....|+..  .+-
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~-~~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNL-KEVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSS-SCCCEEEEECCSSSTTE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccCh-HHhceEeccCcccCCCc
Confidence            654  333211 1 2333 345555555544444443444 4444444433 22221 1112 223 23334332  233


Q ss_pred             EEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-C-----------------------------
Q 004737          592 ILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------------------------  639 (732)
Q Consensus       592 ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~V~sla~spdg~~Lasgs-D-----------------------------  639 (732)
                      ++. ..++.++|.-+...  -.+.++. -...+..++++|+.+.++.+. +                             
T Consensus       709 ~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1158)
T 3ei3_A          709 LAL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS  786 (1158)
T ss_dssp             EEE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred             EEE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence            443 44556888776532  2333333 345678888888766544432 1                             


Q ss_pred             --------------------CeEEEEECCCCCCceeEEEeecCC-CceEEEE---EeCC-CCEEEEEE----------cC
Q 004737          640 --------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CY  684 (732)
Q Consensus       640 --------------------g~I~IWDl~t~~~~~~i~~~~~~~-~~I~sl~---fspd-g~~L~sgs----------~d  684 (732)
                                          ..|+++|..+.   +.+..+.-.. ..+.+++   |..+ ..++++|+          ..
T Consensus       787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~  863 (1158)
T 3ei3_A          787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ  863 (1158)
T ss_dssp             CCC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred             ccccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence                                12455555444   2333332222 2234443   3322 46788876          24


Q ss_pred             CeEEEEECCCCeEE--EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          685 ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       685 g~I~IwDl~t~~~~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |.|++|++.++++.  .....++.|++++-- .| +|++|- ...|+|||
T Consensus       864 Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~  910 (1158)
T 3ei3_A          864 GRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYE  910 (1158)
T ss_dssp             EEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEE
T ss_pred             eEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEE
Confidence            68999999766544  333557889998854 35 444443 46788875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.77  E-value=0.0074  Score=63.72  Aligned_cols=209  Identities=10%  Similarity=0.052  Sum_probs=131.6

Q ss_pred             eccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeec----CC--cceEEEEE---cCCCCcEEEEEe--
Q 004737          488 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HS--TTVMSLDF---HPSKEDLLCSCD--  555 (732)
Q Consensus       488 l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~----h~--~~V~sl~f---spdg~~llaSgs--  555 (732)
                      +....-.-.+++|.+....|+.++ ..++|..||...+......+.+    ..  ..+..|.|   .|+ ..++++..  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence            334445567889988666666666 7999999999855432222222    11  13579999   587 45555443  


Q ss_pred             -----------CCCcEEEEECC---CCeeeeEEecc--------------CCeeEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 004737          556 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV  606 (732)
Q Consensus       556 -----------~Dg~I~iWDl~---t~~~i~~~~~~--------------~~i~~v~~sp~g~~ll~~s~d-g~I~IwDl  606 (732)
                                 .+..|..||+.   +++.+......              .....++..++|+.+++.+.. +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       26779999999   88877666531              247789999999999999998 99999888


Q ss_pred             CCCeEEEEE-cC----CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee-c---CCCceEE-EEEeCCC
Q 004737          607 ETQVCRLKL-QG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHS-CVFHPTF  675 (732)
Q Consensus       607 ~t~~~i~~l-~~----h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~-~---~~~~I~s-l~fspdg  675 (732)
                      .......-+ ..    .....+.|+++|++..|++.. ++.|..+|+...... .+..-. +   ....... +..-.+|
T Consensus       167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G  245 (334)
T 2p9w_A          167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN  245 (334)
T ss_dssp             TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred             CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence            755332211 11    122367999999999888877 889999999853210 122110 1   1122333 3334567


Q ss_pred             CEEEEEE-cCCeEEEEECCCCeEE
Q 004737          676 PSLLVIG-CYETLELWNMTENKTL  698 (732)
Q Consensus       676 ~~L~sgs-~dg~I~IwDl~t~~~~  698 (732)
                      +.++++. ..+.+.+.+....+..
T Consensus       246 ~vllV~~~~~~~~~l~S~DgW~sa  269 (334)
T 2p9w_A          246 ESVLVGARAPYAISFRSWDNWKSA  269 (334)
T ss_dssp             EEEEEEEETTEEEEEECSSTTSEE
T ss_pred             EEEEEEcCCCCEEEEECCCCccee
Confidence            7655554 3445555555544433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.76  E-value=0.01  Score=63.65  Aligned_cols=226  Identities=12%  Similarity=0.064  Sum_probs=128.4

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe---ecCCcceEEEEEcCC---CCcEEEEEeC---C----C
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S  558 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l---~~h~~~V~sl~fspd---g~~llaSgs~---D----g  558 (732)
                      -.....++|.|+|++ +++..+|.|+++|.. +...+..+   .........|+|+|+   +..++++...   +    .
T Consensus        28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRY-LVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEE-EEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeE-EEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345789999999974 445567999999743 32112211   112346889999997   5556555432   3    5


Q ss_pred             cEEEEECCCC--e-----ee-eEEec--cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC------
Q 004737          559 EIRYWSINNG--S-----CA-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------  609 (732)
Q Consensus       559 ~I~iWDl~t~--~-----~i-~~~~~--~~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~------  609 (732)
                      .|..|+....  .     .+ ..+..  ......++|.|++..+++.+.             .|.|..+|....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777877644  1     11 11221  112467999999876665432             246777766532      


Q ss_pred             ---eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe--CC--eEEEEECCCCCC---------------ceeEEEeecCCCce
Q 004737          610 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF  666 (732)
Q Consensus       610 ---~~i~~l~~h~~~V~sla~sp-dg~~Lasgs--Dg--~I~IWDl~t~~~---------------~~~i~~~~~~~~~I  666 (732)
                         ..+.. .++. ....++|+| ++.++++-.  +.  .|.+..  .+..               ...+..+.......
T Consensus       186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap  261 (354)
T 3a9g_A          186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP  261 (354)
T ss_dssp             STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred             CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence               11221 2333 346899999 677666544  22  344433  2210               11223331223456


Q ss_pred             EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-eEE---EEc-cCCCCeeEEEEeCCCCEEEEEE
Q 004737          667 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       667 ~sl~fs-------pdg~~L~sgs~dg~I~IwDl~t~-~~~---~~~-~h~~~V~sla~spdg~~LaSgs  723 (732)
                      ..++|.       .++.++++.-..+.|..+++... +..   .+. .....+..+++.|||.++++..
T Consensus       262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            778884       45654444445568888888753 332   222 2246799999999998666654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.74  E-value=0.006  Score=65.34  Aligned_cols=233  Identities=8%  Similarity=0.056  Sum_probs=126.9

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-eeE----EeecCCcceEEEEEcCC---CCcEEEEEeC-------C
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N  557 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-~~~----~l~~h~~~V~sl~fspd---g~~llaSgs~-------D  557 (732)
                      ...+.|+|.|+|++|+++...|.|++++.+.... .+.    .+.........|+|+|+   +..++++-..       .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3568999999998444556789999998542110 011    11122345789999996   4555555432       2


Q ss_pred             CcEEEEECCCC--e--eee-EEec-c------CCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC---
Q 004737          558 SEIRYWSINNG--S--CAG-VFKC-Q------SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ---  609 (732)
Q Consensus       558 g~I~iWDl~t~--~--~i~-~~~~-~------~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~---  609 (732)
                      ..|..|++...  .  ... .+.. .      .....++|.|++..+++.+.             .|.|..+|....   
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35666776533  1  111 1111 1      12457999999854444332             246777777532   


Q ss_pred             -----------eEEEEEcCCCCCEEEEEEeC-CCCEEEEEe--CCeEEEEECCCCCC-----------------------
Q 004737          610 -----------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK-----------------------  652 (732)
Q Consensus       610 -----------~~i~~l~~h~~~V~sla~sp-dg~~Lasgs--Dg~I~IWDl~t~~~-----------------------  652 (732)
                                 ..+.. .++ .....++|+| ++.++++-.  ++.=.|.-+..+..                       
T Consensus       178 ~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~  255 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE  255 (353)
T ss_dssp             TCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred             CCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence                       11111 123 3467899999 565555433  22222322222111                       


Q ss_pred             -----ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCeEE---EEc-cCCCCeeEEEEeCCC
Q 004737          653 -----GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVN  716 (732)
Q Consensus       653 -----~~~i~~~~~~~~~I~sl~fsp-------dg~~L~sgs~dg~I~IwDl~t~~~~---~~~-~h~~~V~sla~spdg  716 (732)
                           ...+..+.. ......++|..       ++.++++.-..+.|...++..++..   .+. .....+..+++.|||
T Consensus       256 ~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG  334 (353)
T 2g8s_A          256 IVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG  334 (353)
T ss_dssp             SCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred             CCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence                 011122222 23466777764       3555554445668888888766544   222 234589999999999


Q ss_pred             CEEEEEE-CCCeE
Q 004737          717 GMVASAS-HDKCV  728 (732)
Q Consensus       717 ~~LaSgs-~DG~I  728 (732)
                      .++++.. .+|.|
T Consensus       335 ~lyv~td~~~g~I  347 (353)
T 2g8s_A          335 YLYVLTDESSGEL  347 (353)
T ss_dssp             CEEEEECSTTEEE
T ss_pred             cEEEEEeCCCCEE
Confidence            8666543 45554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.70  E-value=0.12  Score=60.69  Aligned_cols=268  Identities=8%  Similarity=0.047  Sum_probs=155.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-cc----CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCC
Q 004737          450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       450 ~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~----h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      ...|.++....+|.+.+ |+. +-|..|+..+.+..... ..    ....|.++....++..|..|+. +-+..+|..+.
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            35688998888887655 444 45788888776543221 11    1234888888877776666664 45888887764


Q ss_pred             CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--------ccCCeeEEEEeCCCCEEEEEE
Q 004737          525 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       525 ~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--------~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      ... .........|.++....++...+  |..+ -|.+++..+++......        ....|.++....++. |.+|+
T Consensus       222 ~~~-~~~~l~~~~i~~i~~d~~g~lWi--gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT  296 (758)
T 3ott_A          222 QIK-QTEAFHNNSIKSLALDGNGDLLA--GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGT  296 (758)
T ss_dssp             EEE-EEEEEEEEEEEEEEECTTCCEEE--EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEE
T ss_pred             eEE-eccCCCCCeEEEEEEcCCCCEEE--EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEe
Confidence            421 11111234588888777764443  3434 58889887655432221        112377777777655 55566


Q ss_pred             cCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee-------cCCC
Q 004737          597 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN  664 (732)
Q Consensus       597 ~dg~I~IwDl~t~~~i~~l~-----~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~-------~~~~  664 (732)
                      ..| +.++............     .....|.+++...+|.+.+...+ -+..++..++.... +..+.       ....
T Consensus       297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~  373 (758)
T 3ott_A          297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHD-AIWYRMGDKTYPLSHN  373 (758)
T ss_dssp             SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCC-CEEECTTCSSSCCSCS
T ss_pred             CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccce-eEEeccCCcCCCCCCC
Confidence            666 5555432211111111     12346899998888887765434 46667655432111 11111       1234


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc--c-----CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~--~-----h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .|.++.-..++. |.+|+ ++.|..||..+++...+.  .     ....|.++....++. |..|+..+-|.++
T Consensus       374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~  444 (758)
T 3ott_A          374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVV  444 (758)
T ss_dssp             CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEE
T ss_pred             ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEE
Confidence            588888888887 55555 568999999888765432  1     234688888777665 4446654435444

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.68  E-value=0.0037  Score=64.60  Aligned_cols=227  Identities=9%  Similarity=0.063  Sum_probs=116.6

Q ss_pred             CCCEEEEEE-CC-----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCC--
Q 004737          461 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD--  525 (732)
Q Consensus       461 dg~~Lasgs-~D-----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~--  525 (732)
                      ++.+++.|+ .+     ..+.+||..+.+-...  +.........+.+  ++.+++.|+.+     ..+.+||+.+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445566665 22     4788999887653321  1111111222222  56677777754     468999988765  


Q ss_pred             -ceeE-EeecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 004737          526 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA  596 (732)
Q Consensus       526 -~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s  596 (732)
                       .... .+.........+.+  + ..+++.|+.+     ..+.+||+.+.+....-.....  -..++. .++..++.|+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence             3221 11111111222222  3 4666666643     3688999988765543332221  122222 2555666666


Q ss_pred             cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCC
Q 004737          597 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       597 ~d-----g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                      .+     ..+.+||+.+.+-...  +....... +++. -++++++.|+ +     ..+.+||+.+..- ..+..+....
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r  244 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPR  244 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCC
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcc
Confidence            54     4689999988754432  11111111 2222 2556666665 3     3689999987521 1121111111


Q ss_pred             CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 004737          664 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTL  698 (732)
Q Consensus       664 ~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~  698 (732)
                      ... +++. -++..++.|+.+     ..|.+||.++.+..
T Consensus       245 ~~~-~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          245 CYV-GATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             BSC-EEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             cce-eEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            112 2222 256666666655     36889999887655

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.67  E-value=0.041  Score=58.70  Aligned_cols=233  Identities=12%  Similarity=0.093  Sum_probs=131.5

Q ss_pred             EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eEEe----ecCCcceEEEEEcCC---CCcEEEEE--eC
Q 004737          487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN  556 (732)
Q Consensus       487 ~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l----~~h~~~V~sl~fspd---g~~llaSg--s~  556 (732)
                      .+...-...+.|+|.|||.+|++--..|.|++++...+... +..+    .........|+|+|+   +..++++-  ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            33334456789999999997777655899999987654432 1111    223456899999995   33444332  23


Q ss_pred             CCcEEEEECCCC----------eeee-EEec--cCCeeEEEEeCCCCEEEEEEc-------------CCeEEEEECCCC-
Q 004737          557 NSEIRYWSINNG----------SCAG-VFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-  609 (732)
Q Consensus       557 Dg~I~iWDl~t~----------~~i~-~~~~--~~~i~~v~~sp~g~~ll~~s~-------------dg~I~IwDl~t~-  609 (732)
                      ++.|.-|.+..+          +.+. .+..  ......+.|.|++..+++.+.             .|.|.-++.... 
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            556666766541          1111 1211  123456999999877666542             356666666532 


Q ss_pred             --------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCC---------------ceeEEEeecCCC
Q 004737          610 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN  664 (732)
Q Consensus       610 --------~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~---------------~~~i~~~~~~~~  664 (732)
                              ..+.. .+|. ....++|+|+|.++++-.  |+.-.|.-+..+..               ...+..+..+..
T Consensus       186 p~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          186 APGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             CTTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             cCCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence                    11221 2343 356899999988776644  43223333332211               112233332223


Q ss_pred             ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeE----E-EEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          665 KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~----~-~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      ....++|.. +. ++.+.. ...|....+.....    . .+.+....+.+|+..|||.++++.+
T Consensus       264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            456677763 44 444443 44676667655432    1 2233457899999999998766654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.65  E-value=0.0082  Score=64.26  Aligned_cols=226  Identities=14%  Similarity=0.084  Sum_probs=122.5

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEe-------ccCCCceEEEEEcCC---CCeEEEEe-C-------C
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D  513 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------~~h~~~V~~l~fspd---g~~Lasgs-~-------D  513 (732)
                      ....|+|.|||++|+++...|.|++++.. +.....+       .........|+|+|+   +.+|+.+. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            46899999999834455667999999853 3322111       112345789999996   45555443 2       2


Q ss_pred             CeEEEEecCCCCc---eeE-Eeec------CCcceEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCCe-
Q 004737          514 RTVRVWDTENPDY---SLR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS-  569 (732)
Q Consensus       514 g~I~IWDl~s~~~---~~~-~l~~------h~~~V~sl~fspdg~~llaSgs~-------------Dg~I~iWDl~t~~-  569 (732)
                      ..|..|++.....   ..+ .+..      .......|.|.|+|. |+++.+.             .|.|.-+|....- 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            3566666653311   011 1111      111246799999984 4444332             2467777765320 


Q ss_pred             -----------eeeEEe-ccCCeeEEEEeCCCCEEEEEEcCC----eEEEEECC--------C-----------------
Q 004737          570 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVE--------T-----------------  608 (732)
Q Consensus       570 -----------~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg----~I~IwDl~--------t-----------------  608 (732)
                                 ....+. .......++|++..+.|+++....    .|.+....        .                 
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                       112222 234478899999656777665532    23222100        0                 


Q ss_pred             ----CeEEEEEcCCCCCEEEEEEeC-------CCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737          609 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       609 ----~~~i~~l~~h~~~V~sla~sp-------dg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                          ..++..+. +...+..++|..       ++.++++.. .+.|...++..+........+......+..+++.|+|.
T Consensus       257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~  335 (353)
T 2g8s_A          257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY  335 (353)
T ss_dssp             CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred             CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence                01112222 223567788864       456665554 77888888875411111111223345789999999998


Q ss_pred             EEEE
Q 004737          677 SLLV  680 (732)
Q Consensus       677 ~L~s  680 (732)
                      .+++
T Consensus       336 lyv~  339 (353)
T 2g8s_A          336 LYVL  339 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.61  E-value=0.13  Score=56.13  Aligned_cols=235  Identities=12%  Similarity=0.176  Sum_probs=156.1

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004737          455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  534 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h  534 (732)
                      +.-.+|..+.||.-. ..++.|||+++...+..+.-.. .|..=+|-.+ +.|+.. .+..|+-|+++....+.+.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALV-TDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEE-cCCeeEEecccCCCCchhheecc
Confidence            456678777777665 6899999999998888776444 5666677544 455555 35689999998766677777766


Q ss_pred             C----cceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCC----CEEEEEE-c--
Q 004737          535 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL----GRILAAA-I--  597 (732)
Q Consensus       535 ~----~~V~sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g----~~ll~~s-~--  597 (732)
                      .    ..|..-..+++.++++++|=      -.|.+.+|..+.+. ...++.+.... ..+-.++    ..+++-. .  
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~  223 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQ  223 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEE-EEEECTTCSSEEEEEEEEECST
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeee-EEEecCCCCCCceEEEEEEecC
Confidence            4    45777777888888887663      24678889887543 22333221111 1122222    1233322 2  


Q ss_pred             -CCeEEEEECCCC--------eEEEEEc----CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCC
Q 004737          598 -ENYISILDVETQ--------VCRLKLQ----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       598 -dg~I~IwDl~t~--------~~i~~l~----~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                       .+.++|.++...        +....+.    ...+-..++..++.-.+++... -|.|++||+.++   .++..-+...
T Consensus       224 ~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~  300 (494)
T 1bpo_A          224 AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISG  300 (494)
T ss_dssp             TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred             CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccC
Confidence             278999998532        1111211    1234556788888877777777 899999999998   7888777777


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          664 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       664 ~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      ..|...+.+....-+++....|.|.-..+.+..++
T Consensus       301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             SCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             CceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            78877777776666888888887777766665443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.57  E-value=0.00018  Score=84.70  Aligned_cols=213  Identities=8%  Similarity=0.018  Sum_probs=127.2

Q ss_pred             CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEEe-ccCCeeEEEEeC
Q 004737          513 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK-CQSGATQMRFQP  587 (732)
Q Consensus       513 Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t----~~~i~~~~-~~~~i~~v~~sp  587 (732)
                      .+.|++.++.....  ..+......+..|+|++.+..++++-...+.|+.+++..    ......+. .......+++.+
T Consensus       385 ~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          385 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             ccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            45788888876542  222222345778999987777776666678999999875    22222221 112356688886


Q ss_pred             CCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C-CeEEEEECCCCCCceeEEEeecCC
Q 004737          588 RLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       588 ~g~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D-g~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                      .++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+.  . +.|.++++..... ..  .+....
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~l  539 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTENI  539 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSSC
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCCC
Confidence            666666554 467899999886654444433334567889999766555544  3 6788887754321 11  111223


Q ss_pred             CceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEcc---CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          664 NKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       664 ~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~~~~~---h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .....++|++++..|+++.. .+.|+++++.......+..   .......|++..+ .++++....+.|..+
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA  610 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred             CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence            44678999998777777665 4589999997654443322   2234456666543 344444445666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.51  E-value=0.019  Score=59.40  Aligned_cols=225  Identities=8%  Similarity=0.027  Sum_probs=115.9

Q ss_pred             EEEEEEC--CCcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC----CeEEEEecCCCCceeEE-eecC
Q 004737          464 LLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTGH  534 (732)
Q Consensus       464 ~Lasgs~--Dg~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D----g~I~IWDl~s~~~~~~~-l~~h  534 (732)
                      +++.|+.  ...+.+||..+.+-...  +.........+.+  ++.+++.|+.+    ..+.+||..+....... +...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4555554  36789999887653322  1111112222233  56677777754    67889998876532211 1111


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc---------
Q 004737          535 STTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI---------  597 (732)
Q Consensus       535 ~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~---------  597 (732)
                      ......+.+  + ..+++.|+.+      ..+.+||+.+.+....-.....  -.+++. .++..++.|+.         
T Consensus        92 r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           92 RDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             ccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            111122222  2 4566677654      4689999988765443222111  122222 24455555553         


Q ss_pred             CCeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737          598 ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~  670 (732)
                      ...+.+||+.+.+-...-... ...-.+++.. ++++++.|+ +     ..+.+||+.+..- ..+..+.........+.
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW-KMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE-EECCCCSCCBSCCEEEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE-EECCCCCCCccceeEEE
Confidence            345899999887543321111 1111122222 556666655 2     3688999887521 11111111111222223


Q ss_pred             EeCCCCEEEEEEcC-----CeEEEEECCCCeEE
Q 004737          671 FHPTFPSLLVIGCY-----ETLELWNMTENKTL  698 (732)
Q Consensus       671 fspdg~~L~sgs~d-----g~I~IwDl~t~~~~  698 (732)
                      +  ++..+++|+.+     ..+.+||..+.+..
T Consensus       246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            3  56667777744     47999999988755

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.42  E-value=0.091  Score=56.20  Aligned_cols=193  Identities=13%  Similarity=0.110  Sum_probs=116.9

Q ss_pred             CeEEEEEcCCCCEEEEE------------ECCCcEEEEEcCC--CeEE-EEecc-----CCCceEEEEEcC--CCC-eEE
Q 004737          452 KVESCHFSPDGKLLATG------------GHDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP--SLS-RLA  508 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasg------------s~Dg~I~VWd~~t--~~~~-~~l~~-----h~~~V~~l~fsp--dg~-~La  508 (732)
                      ....+++.++|..++++            ..+|.|.++|..+  .+.. ..+.+     ..-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34566778887554444            1689999999873  2221 12222     223566777755  454 454


Q ss_pred             EEe-C--CCeEEEEecCCCCceeE---EeecC-CcceEEEEEcCCCCcEEEEEe-----------------CCCcEEEEE
Q 004737          509 TSS-A--DRTVRVWDTENPDYSLR---TFTGH-STTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWS  564 (732)
Q Consensus       509 sgs-~--Dg~I~IWDl~s~~~~~~---~l~~h-~~~V~sl~fspdg~~llaSgs-----------------~Dg~I~iWD  564 (732)
                      ++. .  +.+|.+|+++.......   .+.+. -...+.+.+.++|. ++++..                 ..|.|+.+|
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            442 2  56888988876433222   23322 23578999999874 444543                 124555555


Q ss_pred             CCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEeC-CCCEEEEEe-
Q 004737          565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-  638 (732)
Q Consensus       565 l~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t-~~--~i~~l~~h~~~V~sla~sp-dg~~Lasgs-  638 (732)
                      .  +++......-...+.++|+|+++.++++.. .+.|..||+.. +.  ....+ ...+....+++++ +|.+.+++. 
T Consensus       210 ~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          210 P--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             T--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred             C--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence            5  343333444456788999999999888875 68999999863 32  22233 2346678899999 599888776 


Q ss_pred             CC-eEEEEECC
Q 004737          639 DE-LVRVWSIG  648 (732)
Q Consensus       639 Dg-~I~IWDl~  648 (732)
                      ++ .|..|+..
T Consensus       287 ~g~~v~~~~P~  297 (355)
T 3sre_A          287 NGMRIFFYDAE  297 (355)
T ss_dssp             CHHHHHSCCTT
T ss_pred             CceEEEEECCC
Confidence            53 55555554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.40  E-value=0.097  Score=55.78  Aligned_cols=235  Identities=9%  Similarity=0.057  Sum_probs=124.6

Q ss_pred             EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEe----ccCCCceEEEEEcCC---CCeEEEE-e--C
Q 004737          445 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS-S--A  512 (732)
Q Consensus       445 ~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l----~~h~~~V~~l~fspd---g~~Lasg-s--~  512 (732)
                      .+-..-...+.|+|.|||+++++--..|.|++++..+++..  ..+    .........|+|+|+   +.+|+.. +  .
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            33344455789999999997777655899999987665542  222    123456899999995   3444443 2  3


Q ss_pred             CCeEEEEecCCCC---------ce-eEEee-cCCcceEEEEEcCCCCcEEEEEe------------CCCcEEEEECCCCe
Q 004737          513 DRTVRVWDTENPD---------YS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINNGS  569 (732)
Q Consensus       513 Dg~I~IWDl~s~~---------~~-~~~l~-~h~~~V~sl~fspdg~~llaSgs------------~Dg~I~iWDl~t~~  569 (732)
                      +..|.-|.+....         .. +..+. ........|.|.|+|..++.+|+            ..|.|.-++....-
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            4556666655411         11 11121 11123467999999854443332            13555555554220


Q ss_pred             -------eeeEEe-ccCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCe------------------EEEEEcCCCCC
Q 004737          570 -------CAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQV------------------CRLKLQGHKNQ  621 (732)
Q Consensus       570 -------~i~~~~-~~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~------------------~i~~l~~h~~~  621 (732)
                             ....+. .......++|+|++. |+++..  ++.-.|.-+..+.                  ++..+..+...
T Consensus       186 p~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          186 APGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             CTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             cCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence                   011222 234467899999754 444443  2212222222111                  12222222235


Q ss_pred             EEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 004737          622 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       622 V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~-~~~i~~~~~~~~~I~sl~fspdg~~L~sg  681 (732)
                      ...++|. ++.++...- ...|....+..... .+....+......+..+++.|||..+++.
T Consensus       265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             CcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            5677776 355555444 55666666654321 11222333344678889999998654443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.38  E-value=0.014  Score=60.32  Aligned_cols=228  Identities=11%  Similarity=0.050  Sum_probs=114.3

Q ss_pred             CCEEEEEECC----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCC-----CeEEEEecCCCCceeEE
Q 004737          462 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT  530 (732)
Q Consensus       462 g~~Lasgs~D----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~D-----g~I~IWDl~s~~~~~~~  530 (732)
                      +.+++.|+.+    ..+.+||..+.+-...  +......-..+.+  ++.+++.|+.+     ..+.+||..+.......
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            3455555533    4688889887653322  1111111122222  56677777654     35888998875532211


Q ss_pred             -eecCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc-----
Q 004737          531 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI-----  597 (732)
Q Consensus       531 -l~~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~-----  597 (732)
                       +.........+.+  + +.+++.|+.++     .+.+||+.+.+....-.....  ...++. .++..+++|+.     
T Consensus        94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTT
T ss_pred             CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCC
Confidence             1111111122222  3 45666666443     578899887765443222211  122222 24455555554     


Q ss_pred             --CCeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceE
Q 004737          598 --ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFH  667 (732)
Q Consensus       598 --dg~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~  667 (732)
                        ...+.+||+.+.+-...  +...... .+++.. ++++++.|+ +     ..+.+||+.+..- ..+..+..... -.
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~-~~  245 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSG-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRR-NA  245 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCB-SC
T ss_pred             ccccEEEEEeCCCCcEEECCCCcccccc-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccc-cC
Confidence              24589999988754432  2111111 122222 566666665 3     2689999887521 11211111111 11


Q ss_pred             EEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEE
Q 004737          668 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL  700 (732)
Q Consensus       668 sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~~~  700 (732)
                      .++. -++..+++|+.++     .|.+||..+.+...+
T Consensus       246 ~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          246 GVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             EEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eEEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence            2222 2566667776553     589999998876644

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.23  E-value=0.014  Score=60.16  Aligned_cols=213  Identities=11%  Similarity=0.090  Sum_probs=105.3

Q ss_pred             CCCeEEEEe-CC-----CeEEEEecCCCCceeEE-eecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCe-
Q 004737          503 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS-  569 (732)
Q Consensus       503 dg~~Lasgs-~D-----g~I~IWDl~s~~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~-  569 (732)
                      ++.+++.|+ .+     ..+.+||+.+....... +.........+.+  + +.+++.|+.+     ..+.+||+.+.+ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            344555555 22     36888888765432111 1111111122222  2 4666677654     469999998766 


Q ss_pred             --eeeEEeccCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737          570 --CAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       570 --~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs  638 (732)
                        ....-.....  -..++.. ++..++.|+.+     ..+.+||+.+.+-..  .+...... .+++.. ++++++.|+
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG  167 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVA-SGVIYCLGG  167 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEE-TTEEEEECC
T ss_pred             CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEE-CCEEEEECC
Confidence              3332221111  1222222 44556666543     468999998875433  22211111 122222 566666655


Q ss_pred             -C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCC-CC
Q 004737          639 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD-KL  706 (732)
Q Consensus       639 -D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~-~~  706 (732)
                       +     ..+.+||+.+..- ..+..+..... -.+++. -++..+++|+.+     ..|.+||+.+.+...+.... ..
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  244 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHW-TNVTPMATKRS-GAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR  244 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEE-EEECCCSSCCB-SCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCcccceEEEEeCCCCcE-EeCCCCCcccc-cceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence             3     3688999887521 11111111111 122222 255666666654     47999999988776443211 11


Q ss_pred             -eeEEEEeCCCCEEEEEECC
Q 004737          707 -VSSLAASTVNGMVASASHD  725 (732)
Q Consensus       707 -V~sla~spdg~~LaSgs~D  725 (732)
                       -.+++ .-++++++.|+.+
T Consensus       245 ~~~~~~-~~~~~i~v~GG~~  263 (301)
T 2vpj_A          245 CYVGAT-VLRGRLYAIAGYD  263 (301)
T ss_dssp             BSCEEE-EETTEEEEECCBC
T ss_pred             cceeEE-EECCEEEEEcCcC
Confidence             11222 2366777777765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.18  E-value=0.038  Score=57.45  Aligned_cols=226  Identities=8%  Similarity=-0.015  Sum_probs=114.0

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeC----C-------CeEEEEecCCCCceeEEe
Q 004737          464 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----D-------RTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~----D-------g~I~IWDl~s~~~~~~~l  531 (732)
                      +++.|+  ..+.+||..+.+-.. .+..........+...++.+++.|+.    +       ..+.+||..+...  ..+
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence            344454  579999998876432 22212122333334457788888873    1       1377888877543  222


Q ss_pred             ecCCcc--eEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc--
Q 004737          532 TGHSTT--VMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI--  597 (732)
Q Consensus       532 ~~h~~~--V~sl~fspdg~~llaSgs~D--------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~--  597 (732)
                      ..-..+  -.+++..  ++.+++.|+.+        ..+.+||+.+.+-...-....+  -.+++. .++..++.|+.  
T Consensus        83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~  159 (315)
T 4asc_A           83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGS  159 (315)
T ss_dssp             CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCT
T ss_pred             CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCC
Confidence            111111  1122222  34666666632        4589999988764432221111  122222 34456666665  


Q ss_pred             ----CCeEEEEECCCCeEEEEEcCC-CCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeecCCCce
Q 004737          598 ----ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKF  666 (732)
Q Consensus       598 ----dg~I~IwDl~t~~~i~~l~~h-~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~~~~~~~I  666 (732)
                          -..+.+||+.+.+-...-... ...-.+++.. ++++++.|+ ++     .+.+||+.+.. ...+..+..... -
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~-~  236 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERS-S  236 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCB-S
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCccc-c
Confidence                246999999887543321111 1111122222 566666665 43     58889987752 111211111111 1


Q ss_pred             EEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCeEEEE
Q 004737          667 HSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL  700 (732)
Q Consensus       667 ~sl~fspdg~~L~sgs~d--------------g~I~IwDl~t~~~~~~  700 (732)
                      .+++.. ++..+++|+.+              ..|.+||+.+.+...+
T Consensus       237 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          237 LSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             CEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             eeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            222222 55666666653              2478899988876544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.17  E-value=0.049  Score=60.99  Aligned_cols=259  Identities=11%  Similarity=0.071  Sum_probs=150.5

Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccC-------------------------CCce--EEEEEc---CCCCeEEEEeC-C
Q 004737          465 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWI--TDVRFS---PSLSRLATSSA-D  513 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------------------------~~~V--~~l~fs---pdg~~Lasgs~-D  513 (732)
                      +.+|+..|.|+|+-+.+++.+..+...                         .+..  ..+.+.   .||+||+.-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            677888999999999999888776311                         0111  122332   15677777653 5


Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEEc--CCCCcEEEEEe------CCCcE------------EEEECCCCeeeeE
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV  573 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs--pdg~~llaSgs------~Dg~I------------~iWDl~t~~~i~~  573 (732)
                      ..|-..+++..++....-......+..+.|-  |+..++++.+-      .||..            ...|..+.+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            6777777776553222233345567777775  56555554431      22221            1124444444444


Q ss_pred             EeccCCeeEEEEeCCCCEEEEEEcCC---------------eEEEEECCC-------C-----e--EEEEEcC-------
Q 004737          574 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q-----V--CRLKLQG-------  617 (732)
Q Consensus       574 ~~~~~~i~~v~~sp~g~~ll~~s~dg---------------~I~IwDl~t-------~-----~--~i~~l~~-------  617 (732)
                      +...+....+...+++++.++.+.+.               .+.++++..       +     .  -+..+.+       
T Consensus       233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~  312 (638)
T 3sbq_A          233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD  312 (638)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred             EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence            44445555566778888887777532               356665420       0     0  0111211       


Q ss_pred             --------CCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          618 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       618 --------h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~---------~~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                              -......+.++|||+|+++++  +.++.|+|++..         ....++..-...+-.....+|.++|...
T Consensus       313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aY  392 (638)
T 3sbq_A          313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAY  392 (638)
T ss_dssp             CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred             CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceE
Confidence                    112345688999999999988  889999999742         1112233333345667888999999544


Q ss_pred             EEEEcCCeEEEEECCCC----------eEE-EEccCCCCeeEEE-----EeCCCCEEEEEE
Q 004737          679 LVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSLA-----ASTVNGMVASAS  723 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~----------~~~-~~~~h~~~V~sla-----~spdg~~LaSgs  723 (732)
                      .+.--|..|..|++...          ..+ ++..|-.+-.-.+     -.+||++|++..
T Consensus       393 TtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          393 TTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            44447889999998642          233 4445544322221     246788888775

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.15  E-value=0.033  Score=57.52  Aligned_cols=211  Identities=11%  Similarity=0.038  Sum_probs=106.2

Q ss_pred             CeEEEEeC--CCeEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEEecc
Q 004737          505 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ  577 (732)
Q Consensus       505 ~~Lasgs~--Dg~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~D----g~I~iWDl~t~~~i~~~~~~  577 (732)
                      .+++.|+.  ...+.+||..+...... .+.........+.+   ++.+++.|+.+    ..+.+||+.+.+....-...
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            34555554  35788899887553211 11111111222222   24566677654    57889999887654433322


Q ss_pred             CC--eeEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCCC-CEEEEEEeCCCCEEEEEe-C--------
Q 004737          578 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-D--------  639 (732)
Q Consensus       578 ~~--i~~v~~sp~g~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~~-~V~sla~spdg~~Lasgs-D--------  639 (732)
                      ..  -..++. -++..+++|+.+      ..+.+||..+.+-...-..... .-.+++. -++++++.|+ +        
T Consensus        90 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           90 TPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             SCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred             ccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence            21  122222 255566666654      4699999988754332111111 1112222 2556655554 2        


Q ss_pred             -CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCC---CCeeEE
Q 004737          640 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSSL  710 (732)
Q Consensus       640 -g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~---~~V~sl  710 (732)
                       ..+.+||+.+..- ..+..+... ..-.+++.. +++.+++|+.+     ..+.+||+.+.+...+....   ....++
T Consensus       168 ~~~~~~yd~~~~~W-~~~~~~p~~-r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  244 (306)
T 3ii7_A          168 LNSCEVYDPATETW-TELCPMIEA-RKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCA  244 (306)
T ss_dssp             CCCEEEEETTTTEE-EEECCCSSC-CBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEE
T ss_pred             cceEEEeCCCCCeE-EECCCccch-hhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEE
Confidence             3488999887521 111111111 111222222 55666666543     36899999988766443211   112222


Q ss_pred             EEeCCCCEEEEEECC
Q 004737          711 AASTVNGMVASASHD  725 (732)
Q Consensus       711 a~spdg~~LaSgs~D  725 (732)
                      .+  ++.+++.|+.+
T Consensus       245 ~~--~~~i~v~GG~~  257 (306)
T 3ii7_A          245 AV--GSIVYVLAGFQ  257 (306)
T ss_dssp             EE--TTEEEEEECBC
T ss_pred             EE--CCEEEEEeCcC
Confidence            22  67777788754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.13  E-value=0.026  Score=58.23  Aligned_cols=202  Identities=10%  Similarity=0.059  Sum_probs=100.8

Q ss_pred             CeEEEEecCCCCceeEEeecCCc--ceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEE
Q 004737          514 RTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMR  584 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~--~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~  584 (732)
                      ..+.+||+.+...  ..+.....  .-.+++..  ++.+++.|+.+     ..+.+||..+.+....-.....  -.+++
T Consensus        30 ~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~  105 (302)
T 2xn4_A           30 RSVECYDFKEERW--HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA  105 (302)
T ss_dssp             CCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             CcEEEEcCcCCcE--eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE
Confidence            3577888876543  22211111  11122222  34666677644     3588999987765443322211  12222


Q ss_pred             EeCCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-------CeEEEEECCC
Q 004737          585 FQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-------ELVRVWSIGS  649 (732)
Q Consensus       585 ~sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-------g~I~IWDl~t  649 (732)
                      . .++..+++|+.++     .+.+||+.+.+-...  +...... .+++.. ++++++.|+ +       ..+.+||+.+
T Consensus       106 ~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~  182 (302)
T 2xn4_A          106 V-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATT  182 (302)
T ss_dssp             E-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred             E-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence            2 2456666777653     588999988754332  1111111 122222 555555554 2       2588999877


Q ss_pred             CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCC--CeeEEEEeCCCCEEEEE
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--LVSSLAASTVNGMVASA  722 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~~--~V~sla~spdg~~LaSg  722 (732)
                      ..- ..+..+..... -.+++. -++..+++|+.+     ..+.+||..+.+...+.....  .-.+++. .++.+++.|
T Consensus       183 ~~W-~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~G  258 (302)
T 2xn4_A          183 NEW-TYIAEMSTRRS-GAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVG  258 (302)
T ss_dssp             TEE-EEECCCSSCCB-SCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEC
T ss_pred             CcE-EECCCCccccc-cccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEEC
Confidence            521 11111111111 122222 256666666654     379999999887664432211  1112222 366777777


Q ss_pred             ECCC
Q 004737          723 SHDK  726 (732)
Q Consensus       723 s~DG  726 (732)
                      +.++
T Consensus       259 G~~~  262 (302)
T 2xn4_A          259 GDDG  262 (302)
T ss_dssp             CBCS
T ss_pred             CcCC
Confidence            7654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.09  E-value=0.2  Score=55.38  Aligned_cols=156  Identities=12%  Similarity=0.162  Sum_probs=88.5

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce-eEEeec------CCcceEEEEEcCC---CCcEEEEEeC-----
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN-----  556 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~-~~~l~~------h~~~V~sl~fspd---g~~llaSgs~-----  556 (732)
                      -...+.++|.|+|+++++-...+.|++++..++... +..+..      ....+..|+|+|+   +..++++-+.     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345789999999987776544457888876544422 112211      2355779999995   5555555432     


Q ss_pred             -------CCcEEEEECCCC--ee---eeEE---ec--cCCeeEEEEeCCCCEEEEEEcC---------------------
Q 004737          557 -------NSEIRYWSINNG--SC---AGVF---KC--QSGATQMRFQPRLGRILAAAIE---------------------  598 (732)
Q Consensus       557 -------Dg~I~iWDl~t~--~~---i~~~---~~--~~~i~~v~~sp~g~~ll~~s~d---------------------  598 (732)
                             ...|..|++...  ..   ...+   ..  ......++|.|++..+++.+..                     
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~  185 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ  185 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence                   235666665322  11   1111   11  1236889999999877765532                     


Q ss_pred             -----------CeEEEEECCCCe----------EEEEE-cCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECC
Q 004737          599 -----------NYISILDVETQV----------CRLKL-QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG  648 (732)
Q Consensus       599 -----------g~I~IwDl~t~~----------~i~~l-~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~  648 (732)
                                 |.|.-++....-          ....+ .+| .....++|+++|.++++-.  ++.-.|.-+.
T Consensus       186 ~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~  258 (454)
T 1cru_A          186 ELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIV  258 (454)
T ss_dssp             HHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred             cccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence                       445555554320          11111 233 3567899999888776654  4444444443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.09  E-value=0.02  Score=59.53  Aligned_cols=230  Identities=8%  Similarity=0.030  Sum_probs=115.5

Q ss_pred             CCCCEEEEEECC----CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeC----C-----CeEEEEecCCC
Q 004737          460 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP  524 (732)
Q Consensus       460 pdg~~Lasgs~D----g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~----D-----g~I~IWDl~s~  524 (732)
                      -++.+++.|+.+    ..+.+||..+.+-...  +.........+.+  ++.+++.|+.    +     ..+.+||..+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            356666776632    4688999887653322  1111111122222  5667777665    2     35888898875


Q ss_pred             CceeEE-eecCCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEE
Q 004737          525 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA  596 (732)
Q Consensus       525 ~~~~~~-l~~h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s  596 (732)
                      ...... +.........+.+  + ..+++.|+.+     ..+.+||+.+.+....-.....  -.+++.. ++..++.|+
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG  176 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG  176 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence            432111 1111111222222  3 4566666533     4688999987764433222111  1122222 445566666


Q ss_pred             cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCC
Q 004737          597 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG  663 (732)
Q Consensus       597 ~d-----g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~  663 (732)
                      .+     ..+.+||+.+.+-...  +....... +++.. ++++++.|+ +     ..+.+||+.+..- ..+..+....
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r  253 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRR  253 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCC
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCc
Confidence            54     4689999988754322  11111111 22222 566666665 3     4689999887521 1111111111


Q ss_pred             CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEE
Q 004737          664 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL  700 (732)
Q Consensus       664 ~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~  700 (732)
                      . -.+++.. +++.++.|+.+     ..|.+||+.+.+...+
T Consensus       254 ~-~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          254 S-ALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             B-SCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             c-ceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            1 1222222 56666666644     3688999988776543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.04  E-value=0.16  Score=53.01  Aligned_cols=234  Identities=5%  Similarity=-0.072  Sum_probs=132.6

Q ss_pred             cCCCCEEEEEE--CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC--------------CeEEEEecC
Q 004737          459 SPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTE  522 (732)
Q Consensus       459 Spdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D--------------g~I~IWDl~  522 (732)
                      +.++.+|+...  .++.|...+.+... ...+...    .+--|++++.+|+.+...              ..|+..+++
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            34667766654  24566666655433 3333221    123457788888877543              367777777


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEE---eCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-C
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E  598 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSg---s~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-d  598 (732)
                      ....  ..+...  .  +..|+++++.++++-   ..+..|+..++...........  .+  ..++++++.|+..+. .
T Consensus        97 g~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~  166 (302)
T 3s25_A           97 GHGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKN  166 (302)
T ss_dssp             SCCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTT
T ss_pred             CCcc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCC
Confidence            6542  223221  1  236677777777665   3455677777764443333322  22  456778888887766 5


Q ss_pred             CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC-eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCC
Q 004737          599 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  675 (732)
Q Consensus       599 g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg-~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg  675 (732)
                      ..|++.++..+.....+.+   ... ..+.|++.+|+-..  ++ .|..-++..... .   .+.  ...+  ..|+|++
T Consensus       167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~---~Lt--~~~~--~~~~~~g  234 (302)
T 3s25_A          167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-V---VLT--EANI--EHYNVYG  234 (302)
T ss_dssp             CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-E---ECS--CSCE--EEEEEET
T ss_pred             ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-E---EEe--CCCc--ceEEECC
Confidence            7899999987765544432   222 34669999888776  32 676667665432 1   121  2223  3488888


Q ss_pred             CEEEEEEc--CCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          676 PSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       676 ~~L~sgs~--dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      .+|+.+..  .+.|+.-++.......+...  .+..+  ++.+.+|+-..
T Consensus       235 ~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td  280 (302)
T 3s25_A          235 SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD  280 (302)
T ss_dssp             TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence            88877643  34777778776543333221  23333  34455555444

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.98  E-value=0.11  Score=53.95  Aligned_cols=219  Identities=8%  Similarity=-0.005  Sum_probs=108.1

Q ss_pred             cEEEEEcCCCeEEE-EeccCCCceEEEEEcCCCCeEEEEeC----CC-------eEEEEecCCCCceeEEeecCC--cce
Q 004737          473 KAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRTFTGHS--TTV  538 (732)
Q Consensus       473 ~I~VWd~~t~~~~~-~l~~h~~~V~~l~fspdg~~Lasgs~----Dg-------~I~IWDl~s~~~~~~~l~~h~--~~V  538 (732)
                      .+.+||..+.+-.. .+..............++.+++.|+.    ++       .+.+||..+...  ..+....  ..-
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EECCCCCccccc
Confidence            47889988776443 12211122222333456778888873    12       277788876543  2221111  111


Q ss_pred             EEEEEcCCCCcEEEEEeCC-------CcEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEc------CCeEEE
Q 004737          539 MSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI------ENYISI  603 (732)
Q Consensus       539 ~sl~fspdg~~llaSgs~D-------g~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~------dg~I~I  603 (732)
                      .+++.. + +.+++.|+.+       ..+.+||+.+.+-...-.....  -.+++. .++..++.|+.      ...+.+
T Consensus       103 ~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~  179 (318)
T 2woz_A          103 FGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFI  179 (318)
T ss_dssp             CEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEE
T ss_pred             cceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEE
Confidence            122222 3 4566666643       3588899987765443222221  112222 34455566653      246999


Q ss_pred             EECCCCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737          604 LDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       604 wDl~t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                      ||+.+.+-...-.. ....-.+++.. ++++++.|+ +     ..+.+||+.+..- ..+..+..... -.+++. -++.
T Consensus       180 yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~-~~~~~~-~~~~  255 (318)
T 2woz_A          180 YNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQERS-SISLVS-LAGS  255 (318)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSCCB-SCEEEE-ETTE
T ss_pred             EcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCccc-ceEEEE-ECCE
Confidence            99998754332111 11111222332 556666655 2     2577899877521 12211111111 112222 3456


Q ss_pred             EEEEEEcC--------------CeEEEEECCCCeEEEE
Q 004737          677 SLLVIGCY--------------ETLELWNMTENKTLTL  700 (732)
Q Consensus       677 ~L~sgs~d--------------g~I~IwDl~t~~~~~~  700 (732)
                      .+++|+.+              ..+.+||+.+.+...+
T Consensus       256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            66666543              3688999988876644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.89  E-value=0.18  Score=52.63  Aligned_cols=177  Identities=8%  Similarity=0.034  Sum_probs=108.4

Q ss_pred             EEEEcCCCCEEEEEECC--------------CcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe--C--CCeE
Q 004737          455 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--A--DRTV  516 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~D--------------g~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs--~--Dg~I  516 (732)
                      +--|+++|++|+.+...              ..|+..+++..+... +....    +..|++++++|+...  .  +..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceE
Confidence            34567888888776543              367777777665333 22111    236777888888776  3  3455


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      ...+++...  .+.+..+..    ..|+++++.++.+......|.+.++..+.....+.  +.. ...+.|++++|+...
T Consensus       132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~  202 (302)
T 3s25_A          132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMD  202 (302)
T ss_dssp             EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEE
T ss_pred             EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEE
Confidence            555665433  344444432    34567788888776656789999988766554433  333 234668999998877


Q ss_pred             cC--CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCC
Q 004737          597 IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG  650 (732)
Q Consensus       597 ~d--g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~  650 (732)
                      .+  ..|..-++..... ..+.  ...+  ..|+|++..|+.+.   .+.|..-++...
T Consensus       203 ~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          203 VNRDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             GGGTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             cCCCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            64  3677777776543 2332  2233  34778888887764   346777776553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.76  E-value=0.087  Score=57.30  Aligned_cols=132  Identities=18%  Similarity=0.204  Sum_probs=89.8

Q ss_pred             CCeEEEEECCCCeEEEEEcCC----CCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCc---------eeEEEeec---
Q 004737          598 ENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG---------ECIHELSC---  661 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~~l~~h----~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~---------~~i~~~~~---  661 (732)
                      ++.|+.-++......+.+...    ...|..+..+|+|.+|+..++..|.|..+..+...         ...+.+..   
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            366666666533223333322    23678899999999999999999999999843210         11222222   


Q ss_pred             ---CCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCe--EE---------EEccCCCCeeEEEEeCCCCEEEEEE-
Q 004737          662 ---TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAASTVNGMVASAS-  723 (732)
Q Consensus       662 ---~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~t~~--~~---------~~~~h~~~V~sla~spdg~~LaSgs-  723 (732)
                         ...+|..+.|||-+   ..|++-..|+.|++||+....  +.         ........|.+++|..++-.|+..+ 
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~  199 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT  199 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence               24679999999964   679999999999999997521  11         1123346789999999877666655 


Q ss_pred             -CCCeEE
Q 004737          724 -HDKCVK  729 (732)
Q Consensus       724 -~DG~I~  729 (732)
                       ..|.|+
T Consensus       200 t~~GDIY  206 (452)
T 3pbp_A          200 TEGGDIF  206 (452)
T ss_dssp             TTSCEEE
T ss_pred             CCCCCEE
Confidence             778775

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.74  E-value=0.9  Score=50.10  Aligned_cols=105  Identities=17%  Similarity=0.165  Sum_probs=61.8

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEecc------CCCceEEEEEcCC---CCeEEEEeC-------
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA-------  512 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~------h~~~V~~l~fspd---g~~Lasgs~-------  512 (732)
                      ...++|+|.|||+++++-...+.|++++..+++..  ..+..      .......|+|+|+   +.+|+.+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999987776544357888886655433  23321      2356779999995   555554432       


Q ss_pred             ------CCeEEEEecCCCCc-------eeEEee-cCCcceEEEEEcCCCCcEEEEEe
Q 004737          513 ------DRTVRVWDTENPDY-------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD  555 (732)
Q Consensus       513 ------Dg~I~IWDl~s~~~-------~~~~l~-~h~~~V~sl~fspdg~~llaSgs  555 (732)
                            ...|.-|++.....       .+..+. ........|+|.|+|..++.+++
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  13455555543211       111121 11234689999999865555443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.71  E-value=0.03  Score=59.30  Aligned_cols=230  Identities=8%  Similarity=-0.048  Sum_probs=112.8

Q ss_pred             CCCEEEEEEC-CCcEEEEEcCC-CeEEEEe---c-cCCCceEEEEEcCCCCeEEEEeC-C---------CeEEEEecCCC
Q 004737          461 DGKLLATGGH-DKKAVLWCTES-FTVKSTL---E-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP  524 (732)
Q Consensus       461 dg~~Lasgs~-Dg~I~VWd~~t-~~~~~~l---~-~h~~~V~~l~fspdg~~Lasgs~-D---------g~I~IWDl~s~  524 (732)
                      ++++++.|+. ...+.+||..+ ......+   . .......++.+  ++.+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            6666666664 35788899864 1222222   2 11112222333  5667777765 2         46888998875


Q ss_pred             CceeEEeec-CC-cceEEEEEcCCCCcEEEEEeCC---------------------------------------CcEEEE
Q 004737          525 DYSLRTFTG-HS-TTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYW  563 (732)
Q Consensus       525 ~~~~~~l~~-h~-~~V~sl~fspdg~~llaSgs~D---------------------------------------g~I~iW  563 (732)
                      ......... .. ....++.  .+ ..+++.|+.+                                       ..+.+|
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~--~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y  173 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV--HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF  173 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE--ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred             cEEECCCCCCcccccceEEE--EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence            532211111 11 1112222  23 4666677644                                       579999


Q ss_pred             ECCCCeeeeEEeccC--Ce-eEEEEeCCCCEEEEEEc------CCeEEEEEC--CCCeEEE--EEcCCCCCEEEEEEeCC
Q 004737          564 SINNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       564 Dl~t~~~i~~~~~~~--~i-~~v~~sp~g~~ll~~s~------dg~I~IwDl--~t~~~i~--~l~~h~~~V~sla~spd  630 (732)
                      |+.+.+....-....  .. .+++.. ++..+++|+.      ...+.+||+  .+.+-..  .+..........+...+
T Consensus       174 d~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~  252 (357)
T 2uvk_A          174 DPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISN  252 (357)
T ss_dssp             ETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEET
T ss_pred             eCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEEC
Confidence            998876554433221  12 233333 4455555543      346788887  4443222  11111111111122235


Q ss_pred             CCEEEEEe-C----------------------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--
Q 004737          631 GEYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--  685 (732)
Q Consensus       631 g~~Lasgs-D----------------------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg--  685 (732)
                      +++++.|+ +                      ..+.+||+.+..- ..+..+......  ..++.-+++.+++|+.++  
T Consensus       253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~  329 (357)
T 2uvk_A          253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW-DKSGELSQGRAY--GVSLPWNNSLLIIGGETAGG  329 (357)
T ss_dssp             TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C-EEEEECSSCCBS--SEEEEETTEEEEEEEECGGG
T ss_pred             CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce-eeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCC
Confidence            56666554 2                      2578899886532 333333322222  222334677778888653  


Q ss_pred             ----eEEEEECCCCeEEE
Q 004737          686 ----TLELWNMTENKTLT  699 (732)
Q Consensus       686 ----~I~IwDl~t~~~~~  699 (732)
                          .|.++++++++.+.
T Consensus       330 ~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          330 KAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             CEEEEEEEEEC-CCSCEE
T ss_pred             CEeeeEEEEEEcCcEeEe
Confidence                57777998888773

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.70  E-value=0.17  Score=52.36  Aligned_cols=209  Identities=10%  Similarity=0.023  Sum_probs=103.4

Q ss_pred             EEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC-----C------CcEEEEECCCCeeeeEEe
Q 004737          507 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVFK  575 (732)
Q Consensus       507 Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-----D------g~I~iWDl~t~~~i~~~~  575 (732)
                      ++.|+  ..+.+||..+.......+..............+ +.+++.|+.     .      ..+.+||..+.+....-.
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            44454  579999998876543222211112222222334 455556652     1      127889998876543222


Q ss_pred             ccCC--eeEEEEeCCCCEEEEEEcC--------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe--C--
Q 004737          576 CQSG--ATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS--D--  639 (732)
Q Consensus       576 ~~~~--i~~v~~sp~g~~ll~~s~d--------g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs--D--  639 (732)
                      ...+  -..++.. ++..++.|+.+        ..+.+||..+.+-...  +...... .+++. -++++++.|+  +  
T Consensus        85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTS
T ss_pred             CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCC
Confidence            2111  1122222 44555566532        4689999988753321  1111111 12222 3555555554  2  


Q ss_pred             ---CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEccCC--CCeeE
Q 004737          640 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHD--KLVSS  709 (732)
Q Consensus       640 ---g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~~~~~h~--~~V~s  709 (732)
                         ..+.+||+.+..- ..+..+..... -.+++. -+++.+++|+.++     .+.+||..+.+...+....  ..-.+
T Consensus       162 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  238 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEW-KELAPMQTARS-LFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS  238 (315)
T ss_dssp             CBCCCEEEEETTTTEE-EECCCCSSCCB-SCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             cccceEEEEeCCCCeE-EECCCCCCchh-ceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence               3689999887521 11111111111 122222 2566677777654     6899999988766543211  11122


Q ss_pred             EEEeCCCCEEEEEECC
Q 004737          710 LAASTVNGMVASASHD  725 (732)
Q Consensus       710 la~spdg~~LaSgs~D  725 (732)
                      ++. -++++++.|+.+
T Consensus       239 ~~~-~~~~l~v~GG~~  253 (315)
T 4asc_A          239 LVS-LVGTLYAIGGFA  253 (315)
T ss_dssp             EEE-ETTEEEEEEEEE
T ss_pred             EEE-ECCEEEEECCcc
Confidence            222 356777777764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.61  E-value=0.093  Score=64.90  Aligned_cols=218  Identities=10%  Similarity=0.168  Sum_probs=131.9

Q ss_pred             CCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcE
Q 004737          471 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  550 (732)
Q Consensus       471 Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~l  550 (732)
                      ...|.|.|+.....+.+-.-   ..-+.-.+|..+.||.=. ..++.|+|+++..+ ++.+.- ..+|..-.|-... .+
T Consensus        47 ~~~vvIidl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~-~l  119 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLN-TV  119 (1630)
T ss_pred             CceEEEEECCCCCCcccccc---cchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCC-ee
Confidence            34788889887654422110   112234577777666654 77999999997553 444442 3467777777553 33


Q ss_pred             EEEEeCCCcEEEEECCC-CeeeeEEec-----cCCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004737          551 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG  617 (732)
Q Consensus       551 laSgs~Dg~I~iWDl~t-~~~i~~~~~-----~~~i~~v~~sp~g~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~  617 (732)
                      .+++  +..|+.|++.. ..+.+.+..     ...|..-..+++.++++..+-       .|.+.+|.++.+. -..+.|
T Consensus       120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg  196 (1630)
T 1xi4_A          120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  196 (1630)
T ss_pred             EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence            3233  56799999964 334444432     244777788888888776553       4788889887543 233455


Q ss_pred             CCCCEEEEEEeC---CCCEEEEEe----CCeEEEEECCCCC-C----cee-EEE-ee--cCCCceEEEEEeCCCCEEEEE
Q 004737          618 HKNQVHSVCWNT---SGEYLASVS----DELVRVWSIGSGS-K----GEC-IHE-LS--CTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       618 h~~~V~sla~sp---dg~~Lasgs----Dg~I~IWDl~t~~-~----~~~-i~~-~~--~~~~~I~sl~fspdg~~L~sg  681 (732)
                      |......+....   ...+++.+.    .++++|.++.... .    .+. +.. +.  ....-..++..++....++..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i  276 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence            554443333321   122333333    2689999986530 0    011 111 11  112334567888888899999


Q ss_pred             EcCCeEEEEECCCCeEE
Q 004737          682 GCYETLELWNMTENKTL  698 (732)
Q Consensus       682 s~dg~I~IwDl~t~~~~  698 (732)
                      +..|.|++||+.++.++
T Consensus       277 tk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          277 TKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             ecCceEEEEecccchhh
Confidence            99999999999999877

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.47  E-value=0.23  Score=51.43  Aligned_cols=203  Identities=11%  Similarity=0.053  Sum_probs=98.9

Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC----CC-------cEEEEECCCCeeeeEEeccCC--ee
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVFKCQSG--AT  581 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~----Dg-------~I~iWDl~t~~~i~~~~~~~~--i~  581 (732)
                      .+.+||..+......................+ +.+++.|+.    ++       .+.+||..+.+....-.....  -.
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            47889988766433222211111122222333 456666662    11       277889887765433222111  12


Q ss_pred             EEEEeCCCCEEEEEEcC-------CeEEEEECCCCeEEEEEcCCCCCE--EEEEEeCCCCEEEEEe--C-----CeEEEE
Q 004737          582 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW  645 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~d-------g~I~IwDl~t~~~i~~l~~h~~~V--~sla~spdg~~Lasgs--D-----g~I~IW  645 (732)
                      +++.. ++..+++|+.+       ..+.+||..+.+-...-. ...+.  .+++. .++++++.|+  +     ..+.+|
T Consensus       104 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y  180 (318)
T 2woz_A          104 GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY  180 (318)
T ss_dssp             EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred             ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence            22222 45666677653       358899998875443211 11111  12222 3566666554  2     258999


Q ss_pred             ECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCC--CeeEEEEeCCCCE
Q 004737          646 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--LVSSLAASTVNGM  718 (732)
Q Consensus       646 Dl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~~--~V~sla~spdg~~  718 (732)
                      |+.+..- ..+..+..... ..+++.. ++..+++|+.+     ..+.+||+.+.+...+.....  .-.+++ ..++++
T Consensus       181 d~~~~~W-~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i  256 (318)
T 2woz_A          181 NPKKGDW-KDLAPMKTPRS-MFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL  256 (318)
T ss_dssp             ETTTTEE-EEECCCSSCCB-SCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred             cCCCCEE-EECCCCCCCcc-cceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence            9887521 11111111111 1222332 55666666643     268899999887664432111  111222 235667


Q ss_pred             EEEEECC
Q 004737          719 VASASHD  725 (732)
Q Consensus       719 LaSgs~D  725 (732)
                      ++.|+.+
T Consensus       257 ~v~GG~~  263 (318)
T 2woz_A          257 YAIGGFA  263 (318)
T ss_dssp             EEECCBC
T ss_pred             EEECCee
Confidence            7777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.048  Score=57.93  Aligned_cols=192  Identities=6%  Similarity=-0.023  Sum_probs=102.8

Q ss_pred             CeEEEEeCCCeEEEEecCCCCceeEEeecC-CcceEEEEE--cCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEeccCCe
Q 004737          505 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA  580 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-~~~V~sl~f--spdg~~llaSg-s~Dg~I~iWDl~t~~~i~~~~~~~~i  580 (732)
                      .+++.++.||.|.-+|..+++. .-.+... ..++....-  .+.+..+++.. ..||.|..+|..+|.....+.....+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            4688899999999999988774 3333322 122222110  01122444343 57999999999888665554432211


Q ss_pred             e--EEEEe-----------CCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--CC-----EEEEEEe-----CCCCEEE
Q 004737          581 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA  635 (732)
Q Consensus       581 ~--~v~~s-----------p~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--~~-----V~sla~s-----pdg~~La  635 (732)
                      .  -+...           ..++.+++++.+|.+...|+++|+.+..+....  ..     ..|....     ..+..|+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            1  01111           145788999999999999999999999886421  11     1111111     1134555


Q ss_pred             EEe-CCeEEEEECCCCCCce-eEEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE
Q 004737          636 SVS-DELVRVWSIGSGSKGE-CIHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT  699 (732)
Q Consensus       636 sgs-Dg~I~IWDl~t~~~~~-~i~~~~~~~~~--I-~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~  699 (732)
                      .+. +..+.+.+ +++.... .+.........  + ..-.++.++.+ ++++.|+.|+.+|..+++.+-
T Consensus       170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            555 66666666 3332111 01111111000  0 00001123554 557788888888887777653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.34  E-value=0.14  Score=53.04  Aligned_cols=213  Identities=7%  Similarity=-0.031  Sum_probs=104.2

Q ss_pred             CCCeEEEEeCC----CeEEEEecCCCCceeEEeecCC--cceEEEEEcCCCCcEEEEEeC----C-----CcEEEEECCC
Q 004737          503 SLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINN  567 (732)
Q Consensus       503 dg~~Lasgs~D----g~I~IWDl~s~~~~~~~l~~h~--~~V~sl~fspdg~~llaSgs~----D-----g~I~iWDl~t  567 (732)
                      ++.+++.|+.+    ..+.+||..+...  ..+....  ..-.+++.. + +.+++.|+.    +     ..+.+||+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW--LRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeE--eECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            44555555532    3578888876543  2221111  111122222 2 456666664    2     4688999987


Q ss_pred             CeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEeCCCCEEEEEe
Q 004737          568 GSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       568 ~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~t~~~i~~--l~~h~~~V~sla~spdg~~Lasgs  638 (732)
                      .+....-.....  -..++.. ++..+++|+.+     ..+.+||+.+.+-...  +......- +++.. ++++++.|+
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG  176 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRLLYAVGG  176 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECC
T ss_pred             CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE-CCEEEEEeC
Confidence            764433221111  1222222 44555565533     4689999988754332  11111111 22222 566666655


Q ss_pred             -C-----CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCeEEEEccCCC--
Q 004737          639 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK--  705 (732)
Q Consensus       639 -D-----g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-----g~I~IwDl~t~~~~~~~~h~~--  705 (732)
                       +     ..+.+||+.+..- ..+..+..... ..+++.. ++..+++|+.+     ..+.+||+.+.+...+.....  
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  253 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEW-RMITAMNTIRS-GAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR  253 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEE-EECCCCSSCCB-SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred             CCCCCcCceEEEEeCCCCeE-eeCCCCCCccc-cceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence             3     3688999876521 11111111111 1222222 56666666654     479999999887664432111  


Q ss_pred             CeeEEEEeCCCCEEEEEECCC
Q 004737          706 LVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       706 ~V~sla~spdg~~LaSgs~DG  726 (732)
                      .-.+++. -++++++.|+.++
T Consensus       254 ~~~~~~~-~~~~i~v~GG~~~  273 (308)
T 1zgk_A          254 SALGITV-HQGRIYVLGGYDG  273 (308)
T ss_dssp             BSCEEEE-ETTEEEEECCBCS
T ss_pred             cceEEEE-ECCEEEEEcCcCC
Confidence            1122222 2567777777543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.24  Score=52.59  Aligned_cols=187  Identities=9%  Similarity=0.019  Sum_probs=102.0

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccC-CCceEEEEEc--C-CCCeEEEE-eCCCeEEEEecCCCCceeEEeec---C
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H  534 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~V~~l~fs--p-dg~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~---h  534 (732)
                      .++++++.||.|.-+|.++|+..-.+... ..++....-.  + ++..++.. +.||.|..++..++......-..   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            37888999999999999999999888654 1222221100  1 22333333 57999999998876432211110   1


Q ss_pred             CcceEE---EEE-cC---CCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCe--------eEEEEe-----CCCCEEEE
Q 004737          535 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRILA  594 (732)
Q Consensus       535 ~~~V~s---l~f-sp---dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i--------~~v~~s-----p~g~~ll~  594 (732)
                      ..++..   ..+ .+   .....+++++.+|.+...|+.+|+.+..+......        .|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            112221   000 00   02356678999999999999999999988754321        111111     12356777


Q ss_pred             EEcCCeEEEEECCCCeEEEEE-----cCCCCC--E-EEEEEeCCCCEEEEEeCCeEEEEECCCCC
Q 004737          595 AAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSGS  651 (732)
Q Consensus       595 ~s~dg~I~IwDl~t~~~i~~l-----~~h~~~--V-~sla~spdg~~LasgsDg~I~IWDl~t~~  651 (732)
                      +..+..+.+.+ ++++ +..+     ......  + ..-..+.|+.++++..||.|.-+|..++.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~  233 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRI  233 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCC
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCc
Confidence            77777777776 4443 2111     110000  0 00000124566554448888888877663

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.22  E-value=0.35  Score=52.59  Aligned_cols=143  Identities=10%  Similarity=0.108  Sum_probs=93.1

Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-----CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------
Q 004737          544 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV--------  610 (732)
Q Consensus       544 spdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~--------  610 (732)
                      +.++..+++.-  ++.||.-++......+.++..     ..+..+..+|+|.+++.. .+..|.|..+..+.        
T Consensus        29 ~~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           29 SQNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             ETTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHH
T ss_pred             EcCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCccccc
Confidence            34445555333  578888888755555555544     257889999998877766 45688888876221        


Q ss_pred             ----EEEEEcC------CCCCEEEEEEeCC---CCEEEEEe-CCeEEEEECCCCCCceeE--------EEeecCCCceEE
Q 004737          611 ----CRLKLQG------HKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHS  668 (732)
Q Consensus       611 ----~i~~l~~------h~~~V~sla~spd---g~~Lasgs-Dg~I~IWDl~t~~~~~~i--------~~~~~~~~~I~s  668 (732)
                          ..+.+.-      ...+|..+.|+|-   +..|++-. |+.|++||+..... ++.        .........|.+
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEE
Confidence                1122221      2467999999995   34566655 99999999987322 222        111222367889


Q ss_pred             EEEeCCCCEEEEEE--cCCeEEEE
Q 004737          669 CVFHPTFPSLLVIG--CYETLELW  690 (732)
Q Consensus       669 l~fspdg~~L~sgs--~dg~I~Iw  690 (732)
                      ++|..++-.|++..  ..|.|+-.
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999988788866  77777653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.18  E-value=0.13  Score=63.51  Aligned_cols=236  Identities=12%  Similarity=0.179  Sum_probs=141.6

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004737          455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  534 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h  534 (732)
                      +.-.+|..+.||.-. ..++.|||+++...+..+.- ...|..=.|-.+. .|+..+ +..|.-|++.....+.+.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            345567777776654 67999999998777766653 3456666776543 444443 5589999998655566666555


Q ss_pred             ----CcceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCC-eeEEEE--eCCCCEEEEEEc----
Q 004737          535 ----STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG-ATQMRF--QPRLGRILAAAI----  597 (732)
Q Consensus       535 ----~~~V~sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~-i~~v~~--sp~g~~ll~~s~----  597 (732)
                          ...|..-..+++.++++++|=      -.|.+.+|.++.+.. ..+.++.. ...+..  .+....+++-..    
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence                456777778888888887763      347888888875432 12221111 111111  111122333222    


Q ss_pred             CCeEEEEECCCC---eEEE------EEcC---CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCC
Q 004737          598 ENYISILDVETQ---VCRL------KLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN  664 (732)
Q Consensus       598 dg~I~IwDl~t~---~~i~------~l~~---h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~  664 (732)
                      .+.++|.++...   ....      .+..   ...-..++..++.-.+++... -|.|.+||+.++   .++..-+....
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~  301 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE  301 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCC
Confidence            268888888542   1110      1111   122345677777766666666 899999999998   66665555566


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          665 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       665 ~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      .|...+.+....-+++....|.|.-..+.+..++
T Consensus       302 ~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            6655555544444666667777766666665555

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.15  E-value=0.23  Score=49.33  Aligned_cols=175  Identities=10%  Similarity=-0.058  Sum_probs=96.3

Q ss_pred             CCeEEEEeCCCeEEEEecCCCC---c--eeEEeecC--CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----
Q 004737          504 LSRLATSSADRTVRVWDTENPD---Y--SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----  571 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~---~--~~~~l~~h--~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-----  571 (732)
                      ..+|++...| +|++=......   .  .... .+.  =..+.+++|+|++. |.++  .+|.++-.+..+....     
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~-iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATL-IGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEE-EESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccc-cCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence            4566777777 65554444332   1  1112 222  24688999999865 4444  5787777776542211     


Q ss_pred             -eEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCe
Q 004737          572 -GVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDEL  641 (732)
Q Consensus       572 -~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-------i~~l~~h~~~V~sla~spdg~~LasgsDg~  641 (732)
                       ..+-  .-.....+.|.+++..+++  .||.|+-++..+...       ...-..--..+..|.|.|+|.+.++. |+.
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence             1111  0011478899999877766  669998887643210       11111122468999999999999888 888


Q ss_pred             EEEEECCCCCCce---eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737          642 VRVWSIGSGSKGE---CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE  688 (732)
Q Consensus       642 I~IWDl~t~~~~~---~i~~~~-~~~~~I~sl~fspdg~~L~sgs~dg~I~  688 (732)
                      ++-+.........   ....+. ..-.....+.|.+++..+++.  ++.++
T Consensus       156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            6544333211000   011111 122234556788888755444  66443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.06  E-value=0.23  Score=49.33  Aligned_cols=172  Identities=13%  Similarity=0.007  Sum_probs=96.3

Q ss_pred             CcEEEEEeCCCcEEEEECCCCe------eeeEEec--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 004737          548 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL  613 (732)
Q Consensus       548 ~~llaSgs~Dg~I~iWDl~t~~------~i~~~~~--~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~------i~  613 (732)
                      +.+|++..+| +|+.=....+.      ....+..  -..+..++|+|++..+++  .+|.++-.+..+...      -.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3455566666 55554443332      1122222  146789999997664444  888888888755211      11


Q ss_pred             EEc--CCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737          614 KLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETL  687 (732)
Q Consensus       614 ~l~--~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i----~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I  687 (732)
                      .+-  +.. ...++.|.++|.+.++ +||.|+-++-.+......+    ..-...=..+..+.|.|+|... ++. ++.+
T Consensus        81 ~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~-dg~l  156 (236)
T 1tl2_A           81 KIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH-GQQF  156 (236)
T ss_dssp             EEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE-TTEE
T ss_pred             Eecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEE-EEe-CCcE
Confidence            111  111 1478999999998888 8899988876443221111    1111112457899999999844 444 8876


Q ss_pred             EEEECCCCeE-------EEEc-cCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          688 ELWNMTENKT-------LTLS-AHDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       688 ~IwDl~t~~~-------~~~~-~h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                      +-+....+..       ..+. ..-.....+.|.+++.+.+..  +|.+
T Consensus       157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            5543332210       0111 222344557788888766655  7754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.92  E-value=0.36  Score=50.73  Aligned_cols=185  Identities=10%  Similarity=-0.013  Sum_probs=89.5

Q ss_pred             CCCEEEEEEC-C---------CcEEEEEcCCCeEEEEe--c-cCCCceEEEEEcCCCCeEEEEeCC--------------
Q 004737          461 DGKLLATGGH-D---------KKAVLWCTESFTVKSTL--E-EHTQWITDVRFSPSLSRLATSSAD--------------  513 (732)
Q Consensus       461 dg~~Lasgs~-D---------g~I~VWd~~t~~~~~~l--~-~h~~~V~~l~fspdg~~Lasgs~D--------------  513 (732)
                      ++++++.|+. +         ..+.+||..+.+-...-  . .......++.  .++++++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            5667777765 2         46889998876533221  1 1111122222  467788888764              


Q ss_pred             -------------------------CeEEEEecCCCCceeEEeecCCcce-EEEEEcCCCCcEEEEEeC------CCcEE
Q 004737          514 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR  561 (732)
Q Consensus       514 -------------------------g~I~IWDl~s~~~~~~~l~~h~~~V-~sl~fspdg~~llaSgs~------Dg~I~  561 (732)
                                               ..+.+||..+.......-....... .+++..  ++.+++.|+.      ...+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~  220 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF  220 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence                                     5789999987654322111111111 233333  2456666653      34577


Q ss_pred             EEEC--CCCeeeeEEec--cCC-eeEEEEeCCCCEEEEEEcC----------------------CeEEEEECCCCe--EE
Q 004737          562 YWSI--NNGSCAGVFKC--QSG-ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQV--CR  612 (732)
Q Consensus       562 iWDl--~t~~~i~~~~~--~~~-i~~v~~sp~g~~ll~~s~d----------------------g~I~IwDl~t~~--~i  612 (732)
                      +||+  .+.+....-..  ... ....+...++..+++|+.+                      ..+.+||+.+.+  .+
T Consensus       221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~  300 (357)
T 2uvk_A          221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS  300 (357)
T ss_dssp             EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred             EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence            7887  44433322111  111 1112223344566666532                      257899988753  33


Q ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEe-CC------eEEEEECCCCC
Q 004737          613 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS  651 (732)
Q Consensus       613 ~~l~~h~~~V~sla~spdg~~Lasgs-Dg------~I~IWDl~t~~  651 (732)
                      ..+......-.+  +.-++++++.|+ ++      .|.++++++.+
T Consensus       301 ~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          301 GELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             EECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             CCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            333322222222  223566666666 32      45666887763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.77  E-value=0.25  Score=57.67  Aligned_cols=195  Identities=5%  Similarity=-0.017  Sum_probs=103.5

Q ss_pred             CCCeEEEEeCC----CeEEEEecCCCCceeEEee------cCCcceEEEEEcC-CCCcEEEEEeCC------CcEEEEEC
Q 004737          503 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWSI  565 (732)
Q Consensus       503 dg~~Lasgs~D----g~I~IWDl~s~~~~~~~l~------~h~~~V~sl~fsp-dg~~llaSgs~D------g~I~iWDl  565 (732)
                      ++.+++.|+.+    ..+.+||..+.........      .....-.+++..+ + +.+++.|+.+      ..+.+||+
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeC
Confidence            45556666542    3577888877654322201      1111112233332 3 4566666643      35889999


Q ss_pred             CCCeeeeEEecc--CCeeEEEEeCCCCEEEEEEcCC--eEEEEECCCCeEEEEEc-----CCCCCEEEEEEeCC-CCEEE
Q 004737          566 NNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA  635 (732)
Q Consensus       566 ~t~~~i~~~~~~--~~i~~v~~sp~g~~ll~~s~dg--~I~IwDl~t~~~i~~l~-----~h~~~V~sla~spd-g~~La  635 (732)
                      .+.+....-...  ..-.+++...++..++.|+.++  .+.+||..+..-...-.     .......++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            886544332211  1123334434677788877654  79999999875433211     11122233555555 55666


Q ss_pred             EEe---C-----CeEEEEECCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc--------CCeEEEEECCC
Q 004737          636 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC--------YETLELWNMTE  694 (732)
Q Consensus       636 sgs---D-----g~I~IWDl~t~~~-----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~--------dg~I~IwDl~t  694 (732)
                      .|+   +     +.+.+||+.+..-     ...+.........-.+++...++..+++|+.        ...|.+||..+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            655   2     3588999988641     1222221111112223344444666777764        24699999998


Q ss_pred             CeEE
Q 004737          695 NKTL  698 (732)
Q Consensus       695 ~~~~  698 (732)
                      .+..
T Consensus       636 ~~W~  639 (695)
T 2zwa_A          636 ETLT  639 (695)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            8766

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.76  E-value=2.6  Score=44.89  Aligned_cols=255  Identities=7%  Similarity=-0.026  Sum_probs=119.7

Q ss_pred             CCCeEEEEEcC--CCCEEEEEECCC----cEEEEEcCCCeEEEEecc--------------CCCceEEEEEcC-C-CCeE
Q 004737          450 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL  507 (732)
Q Consensus       450 ~~~V~~lafSp--dg~~Lasgs~Dg----~I~VWd~~t~~~~~~l~~--------------h~~~V~~l~fsp-d-g~~L  507 (732)
                      ...|.+|++.|  ++.++| ++..+    .|... .+.++....+..              +...|.+|++.| + ...|
T Consensus        54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            34699999998  454444 44344    34333 223332222211              112578899987 2 4566


Q ss_pred             EEEeCCCeEEEEecCCCCceeEEeec-------------------CCcceEEEEEcCCC-CcEEEEEeCCCcEEEEECCC
Q 004737          508 ATSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~~~l~~-------------------h~~~V~sl~fspdg-~~llaSgs~Dg~I~iWDl~t  567 (732)
                      +.+...+.|...  ..+......+..                   ....|.+|.++|.. ..+++... ++.|...+-. 
T Consensus       132 ~~g~~~ggl~~S--~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~Dg-  207 (394)
T 3b7f_A          132 YAGTSPQGLFRS--TDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDA-  207 (394)
T ss_dssp             EEEEETTEEEEE--SSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEESST-
T ss_pred             EEEecCCcEEEE--cCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEECCC-
Confidence            666656655444  322222222211                   12357889998853 34443333 4434443221 


Q ss_pred             CeeeeEEec--------------cCCeeEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC--CC---CCEEEEEE
Q 004737          568 GSCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW  627 (732)
Q Consensus       568 ~~~i~~~~~--------------~~~i~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~---~~V~sla~  627 (732)
                      ++.-..+..              ...+.++.+.+. .+.++++.. +.|+..+-. ++.-..+..  ..   ..+.+|++
T Consensus       208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~  285 (394)
T 3b7f_A          208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV  285 (394)
T ss_dssp             TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred             CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence            221111110              023778888886 356666654 445555432 222222221  11   34677888


Q ss_pred             eCC--CCEEEEEe-----------CCeEEEEECCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 004737          628 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL  687 (732)
Q Consensus       628 spd--g~~Lasgs-----------Dg~I~IWDl~t~-~~~~~i~~-~~~~~~----~I~sl~fspdg-~~L~sgs~dg~I  687 (732)
                      +|.  +.+++...           ++...||...++ .....+.. +.....    ....++++|.. ..|++++.++.|
T Consensus       286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence            763  34444331           223456655543 22222211 111000    11357788753 447776666666


Q ss_pred             EEEECCCCeEE-EEccCCCCeeEEEEe
Q 004737          688 ELWNMTENKTL-TLSAHDKLVSSLAAS  713 (732)
Q Consensus       688 ~IwDl~t~~~~-~~~~h~~~V~sla~s  713 (732)
                      +.-+ ..++.. .+..+-..|.++.|.
T Consensus       366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          366 WASA-DEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred             EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence            5433 233322 333444567777764

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.13  E-value=1.8  Score=48.54  Aligned_cols=125  Identities=14%  Similarity=0.147  Sum_probs=84.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC------ee-------eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------SC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~------~~-------i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                      ....+.++|||+++++++-.+.+|.++|+++-      +.       .......-+....+|.++|.-+.+..-|..|..
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk  403 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK  403 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence            44578899999999999989999999998741      11       233334456788999999844444557999999


Q ss_pred             EECCCC----------eEEEEEcCCCCCEEEEE-----EeCCCCEEEEEe----CCe----------EEEEECCCCCCce
Q 004737          604 LDVETQ----------VCRLKLQGHKNQVHSVC-----WNTSGEYLASVS----DEL----------VRVWSIGSGSKGE  654 (732)
Q Consensus       604 wDl~t~----------~~i~~l~~h~~~V~sla-----~spdg~~Lasgs----Dg~----------I~IWDl~t~~~~~  654 (732)
                      |++...          ..+.++.-|..+-.-.+     -.++|++|++..    |..          -.++|+.. .+.+
T Consensus       404 Wni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-dkM~  482 (638)
T 3sbq_A          404 WNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-DEMK  482 (638)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-SSCE
T ss_pred             EeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-CceE
Confidence            998753          45556665544332221     146899998876    443          37788854 3445


Q ss_pred             eEEEeecC
Q 004737          655 CIHELSCT  662 (732)
Q Consensus       655 ~i~~~~~~  662 (732)
                      .++.....
T Consensus       483 lv~D~P~~  490 (638)
T 3sbq_A          483 LVHDGPTF  490 (638)
T ss_dssp             EEEEEEES
T ss_pred             EEecCCCC
Confidence            66655443

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=95.08  E-value=1.7  Score=50.68  Aligned_cols=238  Identities=9%  Similarity=0.012  Sum_probs=122.9

Q ss_pred             EEE-EcCCCCEEEEEE-----CCCcEEEEEcCCCeEEE-Eec-cCCC------ceEEEEEcCCCCeEEEEe---------
Q 004737          455 SCH-FSPDGKLLATGG-----HDKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS---------  511 (732)
Q Consensus       455 ~la-fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~-~l~-~h~~------~V~~l~fspdg~~Lasgs---------  511 (732)
                      .+. ++||+++++.+-     .-..|+++|+++++.+. .|. .-+.      ....++|..+ ..++.+.         
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence            344 889999876542     22479999999988763 121 0000      1133477633 3444332         


Q ss_pred             --CCCeEEEEecCCCCce-eEEeecCCcce-EEEEEcCCCCc----EEEEEeC---CCcEEEEECCC--CeeeeEEeccC
Q 004737          512 --ADRTVRVWDTENPDYS-LRTFTGHSTTV-MSLDFHPSKED----LLCSCDN---NSEIRYWSINN--GSCAGVFKCQS  578 (732)
Q Consensus       512 --~Dg~I~IWDl~s~~~~-~~~l~~h~~~V-~sl~fspdg~~----llaSgs~---Dg~I~iWDl~t--~~~i~~~~~~~  578 (732)
                        ....|+.|.+.+.... ...+.+....+ .....++++..    ++++.+.   ...+++.|...  ++.. .+....
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~  290 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS  290 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence              2357899988765322 23444433333 34445666653    4544432   24566767653  3322 222222


Q ss_pred             CeeEEEEeCCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-Ec-CCCCCEEEEEEeCCCCEEEEEe-
Q 004737          579 GATQMRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       579 ~i~~v~~sp~g~~ll~~----------s~dg~I~IwDl~t~~-------~i~~-l~-~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      ... +....++..++..          ...+.|.++|+.+..       .... +. .....+..+.|..+ .++++.. 
T Consensus       291 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~  368 (711)
T 4hvt_A          291 DAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD  368 (711)
T ss_dssp             TCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred             cce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence            222 2233343333322          235779999987631       1112 32 23346778888876 4555544 


Q ss_pred             CC--eEEEEECCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCeEE
Q 004737          639 DE--LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL  698 (732)
Q Consensus       639 Dg--~I~IWDl~t~~-~~~~i~~~~~~~~~I~sl~fspdg~~L~sg-s~d---g~I~IwDl~t~~~~  698 (732)
                      ++  .|.++|+.++. ....+..+.. ...+....+++++..+++. +..   ..++.+|+. ++..
T Consensus       369 ~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~  433 (711)
T 4hvt_A          369 NVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK  433 (711)
T ss_dssp             TTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred             CCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence            66  57788776542 1111111221 2456666667776544443 332   378888887 5443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.94  E-value=5.6  Score=43.81  Aligned_cols=231  Identities=10%  Similarity=0.018  Sum_probs=114.0

Q ss_pred             CeEEEEEcCCCC-EEEEEECCCcEEEEEcCCC---eEEEEec---------cCCCceEEEEEcCC----CCeEEEEeC--
Q 004737          452 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA--  512 (732)
Q Consensus       452 ~V~~lafSpdg~-~Lasgs~Dg~I~VWd~~t~---~~~~~l~---------~h~~~V~~l~fspd----g~~Lasgs~--  512 (732)
                      .-+.|+|.|||. .|+++...|.|++++....   ..+..+.         ........|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            467899999996 4555677899999975432   1222221         11356789999996    333333221  


Q ss_pred             C----------CeEEEEecCCC---------CceeEEee--cCCcceEEEEEcCCCCcEEEEEeCC--------------
Q 004737          513 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN--------------  557 (732)
Q Consensus       513 D----------g~I~IWDl~s~---------~~~~~~l~--~h~~~V~sl~fspdg~~llaSgs~D--------------  557 (732)
                      +          ..|.-|.+...         ...+..+.  ........|.|.|||..++.+|+..              
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~  174 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD  174 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence            1          13444555421         11122221  1123467899999986555555321              


Q ss_pred             --CcEEEEECCCC------e-------------eeeEEe-ccCCeeEEEEeCCC-----C-EEEEEEcCC----eEEEEE
Q 004737          558 --SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILD  605 (732)
Q Consensus       558 --g~I~iWDl~t~------~-------------~i~~~~-~~~~i~~v~~sp~g-----~-~ll~~s~dg----~I~IwD  605 (732)
                        |.|.-.|....      .             ....+. .......++|.|..     . +++++...|    .-.|..
T Consensus       175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~  254 (463)
T 2wg3_C          175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ  254 (463)
T ss_dssp             CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred             CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence              23444444431      0             001111 23346678999973     3 344333212    123333


Q ss_pred             CCCC------eEEEEEcCCC-CCEEEEEEeCC-------CCEEEEEeCCeEEEEECCCCCCceeEEEe-e--------cC
Q 004737          606 VETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT  662 (732)
Q Consensus       606 l~t~------~~i~~l~~h~-~~V~sla~spd-------g~~LasgsDg~I~IWDl~t~~~~~~i~~~-~--------~~  662 (732)
                      +..+      .++..+..|. ..+..+.|-..       +.+|+..-.+.|....+...........+ .        ..
T Consensus       255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  334 (463)
T 2wg3_C          255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF  334 (463)
T ss_dssp             EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred             eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence            3322      2333443221 46777877532       34555433666666665443211111111 1        12


Q ss_pred             CCceEEEEEeCCCCEEEEEE
Q 004737          663 GNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       663 ~~~I~sl~fspdg~~L~sgs  682 (732)
                      ...+..+.+.|+|..+++..
T Consensus       335 ~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          335 SGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             CSEEEEEEECTTCCEEEEEE
T ss_pred             cCcceEEEECCCCCEEEEec
Confidence            35789999999998666655

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.75  E-value=5.2  Score=42.51  Aligned_cols=260  Identities=8%  Similarity=-0.037  Sum_probs=121.0

Q ss_pred             CEEEEEECCCcEEEEEcCC-CeEEEEe--ccCCCceEEEEEcC-CCCeEEEEeCCC--eEEEEecCCCCceeEEeec---
Q 004737          463 KLLATGGHDKKAVLWCTES-FTVKSTL--EEHTQWITDVRFSP-SLSRLATSSADR--TVRVWDTENPDYSLRTFTG---  533 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t-~~~~~~l--~~h~~~V~~l~fsp-dg~~Lasgs~Dg--~I~IWDl~s~~~~~~~l~~---  533 (732)
                      ..|.+|+..| +.+++... ++....+  ......|.+|++.| +...|+++...|  -..||....+......+..   
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~  101 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA  101 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence            3667777766 55555432 2222211  12345699999998 334444454444  0123333222212222110   


Q ss_pred             -----------CCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEEe--------------------ccCCe
Q 004737          534 -----------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQSGA  580 (732)
Q Consensus       534 -----------h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~~~i~~~~--------------------~~~~i  580 (732)
                                 ....|.++++.|.  ...++ .+...+.|...+-. ++.-..+.                    ....+
T Consensus       102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             CCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence                       1125778899874  33444 44445555544322 22111111                    01236


Q ss_pred             eEEEEeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC-----C--------CCCEEEEEEeCC-CCEEEEEeCCeEEEE
Q 004737          581 TQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELVRVW  645 (732)
Q Consensus       581 ~~v~~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h--------~~~V~sla~spd-g~~LasgsDg~I~IW  645 (732)
                      .++.+.|. .+.++++..++.|...+-. ++.-..+..     +        ...+.+|+++|+ ...|+++.++.|...
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s  258 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRM  258 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEe
Confidence            78888874 4566666666655554322 211111110     0        124889999986 356666665555554


Q ss_pred             ECCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CeEE-EEc-cCC-
Q 004737          646 SIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS-AHD-  704 (732)
Q Consensus       646 Dl~t~~~~~~i~~~~~--~~---~~I~sl~fspd-g~~L~sgs~-----------dg~I~IwDl~t-~~~~-~~~-~h~-  704 (732)
                      +-. +   .....+..  ..   ..+..++++|. ...|+++..           ++...||...+ ++.. .+. +-. 
T Consensus       259 ~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~  334 (394)
T 3b7f_A          259 DRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT  334 (394)
T ss_dssp             ETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred             CCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence            422 2   11222211  11   23567788763 344555542           22344554443 2322 221 111 


Q ss_pred             -C-----CeeEEEEeCCC-CEEEEEECCCeEEE
Q 004737          705 -K-----LVSSLAASTVN-GMVASASHDKCVKI  730 (732)
Q Consensus       705 -~-----~V~sla~spdg-~~LaSgs~DG~I~I  730 (732)
                       .     ....++++|.. ..|+.++.++.|.+
T Consensus       335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             SSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             ccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence             0     12467887753 45666666665543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.69  E-value=6.5  Score=43.32  Aligned_cols=229  Identities=13%  Similarity=0.074  Sum_probs=117.8

Q ss_pred             CceEEEEEcCCCC-eEEEEeCCCeEEEEecCCCC--ceeEEee---------cCCcceEEEEEcCC---CCcEEEEEeC-
Q 004737          493 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN-  556 (732)
Q Consensus       493 ~~V~~l~fspdg~-~Lasgs~Dg~I~IWDl~s~~--~~~~~l~---------~h~~~V~sl~fspd---g~~llaSgs~-  556 (732)
                      ...+.|+|.||+. .|+++...|.|++++.+...  ..+..+.         .....+..|+|+|+   ...++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4568999999986 56666789999999754321  1111111         11356789999996   2234433321 


Q ss_pred             -C----------CcEEEEECCC----------CeeeeEEec---cCCeeEEEEeCCCCEEEEEEcCC-------------
Q 004737          557 -N----------SEIRYWSINN----------GSCAGVFKC---QSGATQMRFQPRLGRILAAAIEN-------------  599 (732)
Q Consensus       557 -D----------g~I~iWDl~t----------~~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~dg-------------  599 (732)
                       +          ..|.-|.+..          .+.+..+..   ......++|.|++..+++.+..+             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          1455566542          122222221   12367899999987777665432             


Q ss_pred             ----eEEEEECCCC---------------------eEEEEEcCCCCCEEEEEEeCC-----CCE-EEEEeC-C----eEE
Q 004737          600 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR  643 (732)
Q Consensus       600 ----~I~IwDl~t~---------------------~~i~~l~~h~~~V~sla~spd-----g~~-LasgsD-g----~I~  643 (732)
                          .|.-+|.+..                     ..+.. .+|.. ...++|+|.     |++ ++.+.. +    .-.
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                3444454431                     01111 12332 356899997     443 433321 2    133


Q ss_pred             EEECCCCCC---ceeEEEeecCC-CceEEEEEeCCCC------EEEEEEcCCeEEEEECCCCe----EEEEc--------
Q 004737          644 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS--------  701 (732)
Q Consensus       644 IWDl~t~~~---~~~i~~~~~~~-~~I~sl~fspdg~------~L~sgs~dg~I~IwDl~t~~----~~~~~--------  701 (732)
                      |..+..+..   ...+..+..+. ..+..+.|-....      .++++...+.|....++...    ...+.        
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            444433221   12344444321 4567777754321      25566656777666665432    11221        


Q ss_pred             -cCCCCeeEEEEeCCCCEEEEEE
Q 004737          702 -AHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       702 -~h~~~V~sla~spdg~~LaSgs  723 (732)
                       .....+..+.+.|||.++++..
T Consensus       332 ~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          332 GYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccCcceEEEECCCCCEEEEec
Confidence             1235789999999999777765

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=94.58  E-value=4.6  Score=42.31  Aligned_cols=262  Identities=7%  Similarity=0.003  Sum_probs=137.4

Q ss_pred             CEEEEEECCCcEEEEEcCCC-------eEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe---cCCCC-----c
Q 004737          463 KLLATGGHDKKAVLWCTESF-------TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD-----Y  526 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD---l~s~~-----~  526 (732)
                      .++++.+.+|.|+--.+.+.       +-+..+. ...+.+..+........|+.-+..|.++...   +....     .
T Consensus         4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~   83 (327)
T 3uc1_A            4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ   83 (327)
T ss_dssp             EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred             cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence            46677778888876553321       1111111 1234455555545556676666777665444   33221     1


Q ss_pred             eeE---EeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-------eeeeEEeccCCeeEEEEeCCCCEEEE
Q 004737          527 SLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRILA  594 (732)
Q Consensus       527 ~~~---~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t~-------~~i~~~~~~~~i~~v~~sp~g~~ll~  594 (732)
                      ++.   .+. ....|..+...++  .+.+++..+.+|.|+...+...       .....++....+..+........++.
T Consensus        84 ~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill  162 (327)
T 3uc1_A           84 HVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL  162 (327)
T ss_dssp             EHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred             EHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence            111   111 2345665544432  2456668888999999887542       22223333455666666666688999


Q ss_pred             EEcCCeEEEEECC--CC---------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCc----eeEE-
Q 004737          595 AAIENYISILDVE--TQ---------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG----ECIH-  657 (732)
Q Consensus       595 ~s~dg~I~IwDl~--t~---------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~----~~i~-  657 (732)
                      .+..|.+..+...  .-         .....+. ....|.++...+++.+|+..+ .|.++.-.+......    .-+. 
T Consensus       163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~  241 (327)
T 3uc1_A          163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT  241 (327)
T ss_dssp             EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred             EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence            9999999888776  21         1112232 345677776666666777777 888888876542110    1121 


Q ss_pred             -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-------EEc--cCCCCeeEEEEeCC-CCEEEEEECCC
Q 004737          658 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK  726 (732)
Q Consensus       658 -~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-------~~~--~h~~~V~sla~spd-g~~LaSgs~DG  726 (732)
                       .+......+..+....+...++..+.+|.+..++..+-...       ...  .....|.++...+. ...+.+.+.+|
T Consensus       242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g  321 (327)
T 3uc1_A          242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG  321 (327)
T ss_dssp             SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred             EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence             22222344555555555567888888888777776442221       111  23456666665443 34566666655

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.54  E-value=0.0065  Score=71.67  Aligned_cols=6  Identities=0%  Similarity=0.146  Sum_probs=2.2

Q ss_pred             CcEEEE
Q 004737          558 SEIRYW  563 (732)
Q Consensus       558 g~I~iW  563 (732)
                      |...+|
T Consensus       488 G~AI~y  493 (727)
T 4b8c_D          488 GCCIFF  493 (727)
T ss_dssp             CCEEEC
T ss_pred             cEEEEE
Confidence            333333

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.46  E-value=1.1  Score=52.20  Aligned_cols=151  Identities=11%  Similarity=0.126  Sum_probs=83.7

Q ss_pred             CCCEEEEEECC------CcEEEEEcCCCeEEEE--eccCCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEE
Q 004737          461 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT  530 (732)
Q Consensus       461 dg~~Lasgs~D------g~I~VWd~~t~~~~~~--l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~  530 (732)
                      ++++++.||.+      ..+.+||..+.+-...  +...... .+++...++.+++.|+.++  .+.+||..+.......
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            77777887754      3588899887543221  2111111 2233324778888887654  6899999876542222


Q ss_pred             e----ecCCcceEEEEEcCCCCcEEEEEeC--C-----CcEEEEECCCCe------eeeEEec--cCC-eeEEEEeCCCC
Q 004737          531 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFKC--QSG-ATQMRFQPRLG  590 (732)
Q Consensus       531 l----~~h~~~V~sl~fspdg~~llaSgs~--D-----g~I~iWDl~t~~------~i~~~~~--~~~-i~~v~~sp~g~  590 (732)
                      .    ........++.+..+...+++.|+.  +     ..+.+||+.+..      .......  ... -..++...++.
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~  609 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK  609 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence            1    1111222335555543456667764  2     458999998876      2222111  111 12333333356


Q ss_pred             EEEEEEc--------CCeEEEEECCCCeEE
Q 004737          591 RILAAAI--------ENYISILDVETQVCR  612 (732)
Q Consensus       591 ~ll~~s~--------dg~I~IwDl~t~~~i  612 (732)
                      .+++|+.        ...|.+||+.+.+-.
T Consensus       610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            6667764        346999999987654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.06  E-value=0.79  Score=47.06  Aligned_cols=245  Identities=13%  Similarity=0.031  Sum_probs=125.2

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  531 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l  531 (732)
                      .|..++..... .++. . ||.|+.|-....-.+-.-......|..|+...+.. ++. . ||.|..|-...... +-.-
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP   97 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence            46666665332 2333 4 88999996543211101111223577777754433 333 4 89999997654321 1111


Q ss_pred             ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe
Q 004737          532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV  610 (732)
Q Consensus       532 ~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~  610 (732)
                      ..-...|..|+....  ..+ .-. ||.|+.|-.... ++-........+..++...  .+.++.. +|.|+.|-.....
T Consensus        98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred             cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence            111246777776643  333 334 899999986542 2211112234465555543  3334444 7999999765421


Q ss_pred             EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 004737          611 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  690 (732)
Q Consensus       611 ~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~Iw  690 (732)
                      .+..-......|..|+...+.. ++. .||.|+.|=.......-   .-......|..++.....  .++.. ++.|+.|
T Consensus       171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w  242 (282)
T 3qhy_B          171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW  242 (282)
T ss_dssp             TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred             CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence            1100011234677777654443 333 69999999765432110   000112345555544333  34444 8999999


Q ss_pred             ECCCCeEEEEccCCCCeeEEEEeCCCCEEEE
Q 004737          691 NMTENKTLTLSAHDKLVSSLAASTVNGMVAS  721 (732)
Q Consensus       691 Dl~t~~~~~~~~h~~~V~sla~spdg~~LaS  721 (732)
                      -......+.   ....|..++......+.++
T Consensus       243 G~n~~gq~~---v~~~v~~iaaG~~h~~al~  270 (282)
T 3qhy_B          243 GSSRTAPSS---VQSGVSSIEAGPNAAYALK  270 (282)
T ss_dssp             STTCCCCGG---GSSCEEEEEECSSCEEEEE
T ss_pred             cCCCCcccc---CCCCcEEEEECcCeEEEEe
Confidence            765543321   1346777776655444333

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.01  E-value=1.3  Score=45.30  Aligned_cols=217  Identities=10%  Similarity=0.006  Sum_probs=114.1

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-  571 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i-  571 (732)
                      ..|..|+....  +.+.-. ||.|..|-...... +-........|..|+....  ..++. . ||.|+.|-....-.+ 
T Consensus        24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence            35777776544  222235 99999997654321 1111112335777776533  34434 4 899999986542211 


Q ss_pred             eEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCC
Q 004737          572 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS  651 (732)
Q Consensus       572 ~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~  651 (732)
                      ........|..++...  .+.++.. +|.|+.|-....-.+-.-......|..|+...+..+++ . ||.|+.|-.....
T Consensus        96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFG  170 (282)
T ss_dssp             CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTS
T ss_pred             CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCC
Confidence            1111224566666554  4555556 99999997654211100111234677776654433332 2 8999999765432


Q ss_pred             CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEE
Q 004737          652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       652 ~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~I  730 (732)
                      ...   ........|..++.-...  .++. .++.|+.|-....-.+ .-......|..++......++++   ||.|..
T Consensus       171 qlg---~p~~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~  241 (282)
T 3qhy_B          171 QTT---VPAEAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIA  241 (282)
T ss_dssp             TTS---CCGGGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEE
T ss_pred             CCC---CceecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEE
Confidence            111   000112345555554333  3333 6899999976543222 11122245777776544433333   899988


Q ss_pred             e
Q 004737          731 W  731 (732)
Q Consensus       731 W  731 (732)
                      |
T Consensus       242 w  242 (282)
T 3qhy_B          242 W  242 (282)
T ss_dssp             E
T ss_pred             e
Confidence            8

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.96  E-value=7.9  Score=41.43  Aligned_cols=165  Identities=10%  Similarity=0.086  Sum_probs=97.5

Q ss_pred             cEEEEECCCC--eeeeEEecc-------CCeeEEEEe---CC----CCEEEEEEc-CCeEEEEECCCCeEEEEEcC----
Q 004737          559 EIRYWSINNG--SCAGVFKCQ-------SGATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG----  617 (732)
Q Consensus       559 ~I~iWDl~t~--~~i~~~~~~-------~~i~~v~~s---p~----g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~----  617 (732)
                      .|.+||+.+.  +.++.+...       .....+++.   +.    +.+++.+.. .+.|.|||+.+++..+.+..    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4667888887  777777643       235677777   22    344555553 57899999999876655421    


Q ss_pred             C--------------CCCEEEEEEeCC----CCEEEEEeCCeEEEEECC-----CCCCceeEEEeecCC--CceEEEEEe
Q 004737          618 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH  672 (732)
Q Consensus       618 h--------------~~~V~sla~spd----g~~LasgsDg~I~IWDl~-----t~~~~~~i~~~~~~~--~~I~sl~fs  672 (732)
                      .              ...|..|+++|+    ++.|+...=..-++|.+.     .......+..+-..+  ..-..+++.
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D  283 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD  283 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence            0              236888999998    788887772222344332     222112222222222  344556776


Q ss_pred             -CCCCEEEEEEcCCeEEEEECCC-C----eEE--EEccCCCCeeEEEEeCCCCEEEEEE
Q 004737          673 -PTFPSLLVIGCYETLELWNMTE-N----KTL--TLSAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       673 -pdg~~L~sgs~dg~I~IwDl~t-~----~~~--~~~~h~~~V~sla~spdg~~LaSgs  723 (732)
                       .+|..+++--....|..|+..+ .    ...  .....-..+..+.+..++.+.++++
T Consensus       284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence             5666555556667999999876 1    122  2222234578888877776555543

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=93.18  E-value=9.4  Score=39.85  Aligned_cols=232  Identities=8%  Similarity=0.044  Sum_probs=127.2

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCe----EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---CCC-----ce
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-----YS  527 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---s~~-----~~  527 (732)
                      |+..++++.+.+|.|+--.+...+    ....+..+ +.+..+........|+..+..|.+.-+...   ...     .+
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            566788888999998876544211    11122323 345555555455677777788876665543   211     11


Q ss_pred             eE---EeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC--------CeeeeEEeccCCeeEEEEeCCCCEEEE
Q 004737          528 LR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILA  594 (732)
Q Consensus       528 ~~---~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t--------~~~i~~~~~~~~i~~v~~sp~g~~ll~  594 (732)
                      +.   .+. ....|..+...++  ....++.++.+|.++...+..        +.....+.....+..+........++.
T Consensus        82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l  160 (323)
T 1wp5_A           82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFL  160 (323)
T ss_dssp             GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEE
T ss_pred             hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEE
Confidence            11   111 2334555443332  133455778899999988742        222222333345555555556678999


Q ss_pred             EEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEECCCCCC----ceeEE--
Q 004737          595 AAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----GECIH--  657 (732)
Q Consensus       595 ~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~-~Lasgs-Dg~I~IWDl~t~~~----~~~i~--  657 (732)
                      .+.+|.+..|+...         |.....+. ....|.++...+++. .|+..+ .|..+..++..-..    ..-+.  
T Consensus       161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~  239 (323)
T 1wp5_A          161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL  239 (323)
T ss_dssp             EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred             EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence            99999999887642         11222232 334566665545454 555555 88888877754210    01111  


Q ss_pred             -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          658 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       658 -~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                       .+...+..+..+....+...++..+..|.+..+++.+
T Consensus       240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             CCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             eecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence             1222233555444444455677888888776666644

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=92.13  E-value=14  Score=39.31  Aligned_cols=233  Identities=10%  Similarity=0.051  Sum_probs=131.4

Q ss_pred             EcCCCCEEEEEECCCcEEEEEcCC---------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC---CCC
Q 004737          458 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD  525 (732)
Q Consensus       458 fSpdg~~Lasgs~Dg~I~VWd~~t---------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~---s~~  525 (732)
                      +-++..++++.+.+|.|+--.+..         +..-..++ ..+.+..+........|+..+..|.+.-+...   ...
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~   81 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence            346778999999999999765432         22223344 34566666666666777778888877665532   211


Q ss_pred             -----ceeE---EeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-------CeeeeEEeccCCeeEEEEeCC
Q 004737          526 -----YSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR  588 (732)
Q Consensus       526 -----~~~~---~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~~~~i~~v~~sp~  588 (732)
                           ..+.   .+. ....|.++....+  ....++.++..|.++...+..       +.....++....+..+.....
T Consensus        82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~  160 (370)
T 3l6v_A           82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG  160 (370)
T ss_dssp             TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred             cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence                 1111   122 2345665544321  234556788899999988643       222223333345555655566


Q ss_pred             CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeC------------------------------
Q 004737          589 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------  629 (732)
Q Consensus       589 g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~sp------------------------------  629 (732)
                      ...++..+.+|.+..|+...         |.....+. ....|.++...+                              
T Consensus       161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~  239 (370)
T 3l6v_A          161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID  239 (370)
T ss_dssp             CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred             CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence            67899999999988887542         11122222 234565555444                              


Q ss_pred             -----CCCEEEEEe-CCeEEEEECCCCCC----ceeEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          630 -----SGEYLASVS-DELVRVWSIGSGSK----GECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       630 -----dg~~Lasgs-Dg~I~IWDl~t~~~----~~~i~--~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                           ++.+|++.+ .|..+...+..-..    ..-+.  .+....+.+..+.+..+...++..+..|.+.-..+.
T Consensus       240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~  315 (370)
T 3l6v_A          240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS  315 (370)
T ss_dssp             -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred             cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence                 345677777 88888887653211    01111  222223455555444555567777777766555543

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=91.18  E-value=17  Score=38.51  Aligned_cols=228  Identities=10%  Similarity=0.099  Sum_probs=114.9

Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEecCCCC---------c-eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEE
Q 004737          495 ITDVRFSPSLSRLATSSADRTVRVWDTENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  563 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~---------~-~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iW  563 (732)
                      |..|+..  ....+.-..||.|..|-.....         . ....+.. ....+..++++......+ .-..||.|+.|
T Consensus        55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~-al~~~G~v~~w  131 (389)
T 3kci_A           55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCL-ALSSEGEVYSW  131 (389)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEE-EEETTSCEEEE
T ss_pred             eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEE-EEcCCCCEEEE
Confidence            4445432  3455566688999999643211         0 0111111 122344455554433444 55669999999


Q ss_pred             ECCCCe---------e--eeEEeccC--CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----------e-EEEEEcC-C
Q 004737          564 SINNGS---------C--AGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-H  618 (732)
Q Consensus       564 Dl~t~~---------~--i~~~~~~~--~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----------~-~i~~l~~-h  618 (732)
                      -....-         .  ...+..-.  .|..++.  ...+.++...+|.|+.|=....          . ....+.. .
T Consensus       132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~  209 (389)
T 3kci_A          132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ  209 (389)
T ss_dssp             ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred             eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence            653210         1  11111112  3444443  4467778888999999965320          1 1112221 2


Q ss_pred             CCCEEEEEEeCCCCE-EEEEeCCeEEEEECCCCC------Cce--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 004737          619 KNQVHSVCWNTSGEY-LASVSDELVRVWSIGSGS------KGE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLE  688 (732)
Q Consensus       619 ~~~V~sla~spdg~~-LasgsDg~I~IWDl~t~~------~~~--~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~  688 (732)
                      ...|..|+......+ ++...||.|+.|-.....      ...  ....+.. ....|..++.-  ..+.++...++.|+
T Consensus       210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~  287 (389)
T 3kci_A          210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVY  287 (389)
T ss_dssp             TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEE
Confidence            345777776543233 444449999999654310      001  1111111 12235544443  34566678889999


Q ss_pred             EEECCCC----------e--EEEEcc-CCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          689 LWNMTEN----------K--TLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       689 IwDl~t~----------~--~~~~~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      .|-....          .  +..+.. ....|..|+..  ..+.+....||.|+.|
T Consensus       288 ~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w  341 (389)
T 3kci_A          288 TWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW  341 (389)
T ss_dssp             EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred             EEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence            9965321          1  112222 22356666654  3344555788888888

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=91.12  E-value=16  Score=37.86  Aligned_cols=230  Identities=9%  Similarity=0.054  Sum_probs=126.1

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCeEE---------EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc----
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----  526 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~~~---------~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~----  526 (732)
                      ++..++++.+.+|.|+--.+...+..         ..+..+ +.+..+........++..+..|.++-+....-..    
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~   84 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA   84 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence            46678899999999998876543221         112222 4455555555566788888899877766542100    


Q ss_pred             ----e---eEEeecCCcceEEEEEcCC--CCcEEEEEeCCCcEEEEECCC-------CeeeeEEeccCCeeEEEEeCCCC
Q 004737          527 ----S---LRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG  590 (732)
Q Consensus       527 ----~---~~~l~~h~~~V~sl~fspd--g~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~~~~i~~v~~sp~g~  590 (732)
                          .   ...+. ....|.++...++  ....++..+..|.++...+..       |.....+.....+..+.......
T Consensus        85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE  163 (312)
T ss_dssp             ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTC
T ss_pred             CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCC
Confidence                0   00122 2234555544331  233444677899999888743       22222333344566666655567


Q ss_pred             EEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC----ceeE
Q 004737          591 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECI  656 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~----~~~i  656 (732)
                      .++..+.+|.+..+....         |.....+. ....|.++....++..|++.+ .|..+..++..-..    ..=+
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kGv  242 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGY  242 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCCE
Confidence            899999999999997653         22222333 245666666655566566666 88888888754211    0111


Q ss_pred             EEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          657 HELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       657 ~~~~---~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ..+.   .....+..+........++..+..|.+.-...
T Consensus       243 ~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~  281 (312)
T 1suu_A          243 TSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA  281 (312)
T ss_dssp             ECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred             EeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            1121   12234443333334455666666664433343

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=90.86  E-value=15  Score=37.26  Aligned_cols=196  Identities=10%  Similarity=-0.028  Sum_probs=110.2

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEE---EecCCCCceeEEeecCCcceEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC-
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRV---WDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-  568 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~I---WDl~s~~~~~~~l~~h~~~V~sl~fspd-g~~llaSgs~Dg~I~iWDl~t~-  568 (732)
                      .+..+.......+|+.-+.+|.++-   |++......- .+ .....|..+.. .+ .+..++..+.+|.|+...+... 
T Consensus        25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~  101 (276)
T 3no0_A           25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE  101 (276)
T ss_dssp             CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred             eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence            3444443334445555666666554   3332211111 12 23455666644 32 3456668888999999987543 


Q ss_pred             -----eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEE
Q 004737          569 -----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYL  634 (732)
Q Consensus       569 -----~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~L  634 (732)
                           .....++....+..+........++..+..|.++.+....         |.....+. ....|.++...+++.++
T Consensus       102 ~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~l  180 (276)
T 3no0_A          102 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYL  180 (276)
T ss_dssp             TCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEE
T ss_pred             hhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEE
Confidence                 2222333445566666666667899999999998887532         22222333 23566666655666666


Q ss_pred             EEEe-CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 004737          635 ASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE  694 (732)
Q Consensus       635 asgs-Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~I--wDl~t  694 (732)
                      +..+ .|.++...+..-..    ..-+..+ .....+..+....+...++..+.+|.+..  ++..+
T Consensus       181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence            6666 88888887653211    1112222 23444555544444456788888887777  76644

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=90.70  E-value=19  Score=38.21  Aligned_cols=226  Identities=7%  Similarity=0.008  Sum_probs=120.7

Q ss_pred             EcCCCCeEEEEeCCCeEEEEecCC------C--CceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEE---CCC-
Q 004737          500 FSPSLSRLATSSADRTVRVWDTEN------P--DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN-  567 (732)
Q Consensus       500 fspdg~~Lasgs~Dg~I~IWDl~s------~--~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWD---l~t-  567 (732)
                      +-++..++++.+.+|.|+--.+..      +  ......++ ..+.+..+........+++ .+..|.++.+.   +.. 
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~-fT~~G~~~~~~~~eip~~   80 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLT-FTSSGKVFWLPVHQLPEA   80 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEE-EETTSEEEEEEGGGSCBC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEE-EeCCCeEEEEEHHHCcCC
Confidence            346778999999999999865432      1  11122233 3455666655555445554 44567666554   322 


Q ss_pred             -----Ceeee---EEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeC
Q 004737          568 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT  629 (732)
Q Consensus       568 -----~~~i~---~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~sp  629 (732)
                           |..+.   .+.....|..+....   .+.+++.++..|.++...+..       +.....+.. ...+..+....
T Consensus        81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~  159 (370)
T 3l6v_A           81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD  159 (370)
T ss_dssp             CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred             CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence                 22221   122334555554432   356899999999999887642       222223332 44555555554


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCCC----ceeEEEee-cCCCceEEEEEeC------------------------------
Q 004737          630 SGEYLASVS-DELVRVWSIGSGSK----GECIHELS-CTGNKFHSCVFHP------------------------------  673 (732)
Q Consensus       630 dg~~Lasgs-Dg~I~IWDl~t~~~----~~~i~~~~-~~~~~I~sl~fsp------------------------------  673 (732)
                      ....|+..+ +|.+..|+...-..    ..-+..+. ..+..|.++...+                              
T Consensus       160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~  239 (370)
T 3l6v_A          160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID  239 (370)
T ss_dssp             SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------------
T ss_pred             CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence            444455555 88877777543210    01111111 1234455554443                              


Q ss_pred             -----CCCEEEEEEcCCeEEEEECCCCeE--------E--EEccCCCCeeEEEEeCCCCEEEEEECCCeE
Q 004737          674 -----TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV  728 (732)
Q Consensus       674 -----dg~~L~sgs~dg~I~IwDl~t~~~--------~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I  728 (732)
                           .+.++++++..|..+...+.....        .  .+....+.+..+.+..+...|+..+..|.+
T Consensus       240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~  309 (370)
T 3l6v_A          240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL  309 (370)
T ss_dssp             -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred             cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence                 456799999999888887754322        1  222233455555544444455555666654

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=89.80  E-value=20  Score=36.95  Aligned_cols=232  Identities=9%  Similarity=0.068  Sum_probs=126.3

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCeEEE---------EeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEec---CCCCc-
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDY-  526 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~---------~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl---~s~~~-  526 (732)
                      |+..++++.+.+|.|+--.+.+.+...         .+..+ +.+..+........|+..+..|.++-+..   ..... 
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            355678888999999877765533221         12222 34444444445567777778887665544   22211 


Q ss_pred             ----eeE---EeecCCcceEEEEEcC--CCCcEEEEEeCCCcEEEEECCC-------CeeeeEEeccCCeeEEEEeCCCC
Q 004737          527 ----SLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG  590 (732)
Q Consensus       527 ----~~~---~l~~h~~~V~sl~fsp--dg~~llaSgs~Dg~I~iWDl~t-------~~~i~~~~~~~~i~~v~~sp~g~  590 (732)
                          ++.   .+. ....|..+...+  +....++..+.+|.++...+..       +.....+.....+..+.......
T Consensus        80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~  158 (307)
T 1zi0_A           80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED  158 (307)
T ss_dssp             SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred             CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence                111   122 334566554422  1234455778899999987642       22222233335555655555667


Q ss_pred             EEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC------Cce
Q 004737          591 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE  654 (732)
Q Consensus       591 ~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~------~~~  654 (732)
                      .++..+.+|.+..++...         +.....+. ....|.++....++..|+..+ .|.++..++..-.      ...
T Consensus       159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~  237 (307)
T 1zi0_A          159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV  237 (307)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred             EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence            899999999998887642         12222232 345677776555556666666 8888888774321      111


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      ....+....+.+..+....+...++..+.+|.+.-+++..
T Consensus       238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            1112222234555554444455577777787766666544

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=89.58  E-value=22  Score=37.08  Aligned_cols=195  Identities=11%  Similarity=0.035  Sum_probs=107.9

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEE---cCC------CeEEEE---eccCCCceEEE-EEcC--CCCeEEEEeCCCeE
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWC---TES------FTVKST---LEEHTQWITDV-RFSP--SLSRLATSSADRTV  516 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd---~~t------~~~~~~---l~~h~~~V~~l-~fsp--dg~~Lasgs~Dg~I  516 (732)
                      .+..+........|+..+..|.++-..   +..      |..+..   +. ....|..+ .+..  +..++++++.+|.|
T Consensus        43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i  121 (327)
T 3uc1_A           43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV  121 (327)
T ss_dssp             CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred             EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence            344454444555666666777666544   332      222211   22 23445554 4432  57899999999999


Q ss_pred             EEEecCCCCc------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC--C---------CeeeeEEeccCC
Q 004737          517 RVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSG  579 (732)
Q Consensus       517 ~IWDl~s~~~------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~--t---------~~~i~~~~~~~~  579 (732)
                      +...+..-..      ....+.. .+.+..+........++ ..+..|.+..+.+.  .         |...-.+.....
T Consensus       122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~  199 (327)
T 3uc1_A          122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR  199 (327)
T ss_dssp             EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred             EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence            9988764211      1112333 34555555544444454 55668888888766  2         111122333455


Q ss_pred             eeEEEEeCCCCEEEEEEcCCeEEEEECCCC-------eEEE--EEcCCCCCEEEEEEeCCCC-EEEEEeCCeEEEEECCC
Q 004737          580 ATQMRFQPRLGRILAAAIENYISILDVETQ-------VCRL--KLQGHKNQVHSVCWNTSGE-YLASVSDELVRVWSIGS  649 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~-------~~i~--~l~~h~~~V~sla~spdg~-~LasgsDg~I~IWDl~t  649 (732)
                      +..+...+.+..++.++..|.++...+..-       +-+.  .+....+.+..+....+.. +++...+|.+..++...
T Consensus       200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence            777766666678999999999988875421       1122  2222234555554444444 44444478777776543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=89.47  E-value=38  Score=39.73  Aligned_cols=147  Identities=16%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             CCCeEEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEeccC-------CCceEEEEEcCC-CCeEEEEeCCCe----E
Q 004737          450 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V  516 (732)
Q Consensus       450 ~~~V~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------~~~V~~l~fspd-g~~Lasgs~Dg~----I  516 (732)
                      .+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+       ...|.+|++.|. ...++.+..+..    -
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            357999999995 34566677777766554 344444444332       236999999984 344555443311    3


Q ss_pred             EEEecCCCCceeEEeecC-------C--cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-------ccCCe
Q 004737          517 RVWDTENPDYSLRTFTGH-------S--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA  580 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h-------~--~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-------~~~~i  580 (732)
                      .||...++..........       .  ..+..++++|.....++.+...+.|.. ....++.=..+.       ....+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence            455444433333322210       1  135678888865556656653443321 222222111111       11347


Q ss_pred             eEEEEeCC-CCEEEEEEcC
Q 004737          581 TQMRFQPR-LGRILAAAIE  598 (732)
Q Consensus       581 ~~v~~sp~-g~~ll~~s~d  598 (732)
                      ..+.+.|. ...++++..+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEECTTSTTCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcC
Confidence            78888875 3466666655

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=88.69  E-value=20  Score=41.71  Aligned_cols=223  Identities=9%  Similarity=0.041  Sum_probs=113.1

Q ss_pred             EEEE-EcCCCCeEEEEe-C----CCeEEEEecCCCCceeEEee-cCCc------ceEEEEEcCCCCcEEEEEe-------
Q 004737          496 TDVR-FSPSLSRLATSS-A----DRTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD-------  555 (732)
Q Consensus       496 ~~l~-fspdg~~Lasgs-~----Dg~I~IWDl~s~~~~~~~l~-~h~~------~V~sl~fspdg~~llaSgs-------  555 (732)
                      ..+. ++|++++++.+- .    -..|+++|+.+++..--.+. .-+.      ....++|..+ +.++++..       
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence            3444 888988876542 2    23799999998764221222 0000      1134477633 45554421       


Q ss_pred             ---CCCcEEEEECCCCe--eeeEEeccCC--eeEEEEeCCCCE-----EEEEEc---CCeEEEEECCC--CeEEEEEcCC
Q 004737          556 ---NNSEIRYWSINNGS--CAGVFKCQSG--ATQMRFQPRLGR-----ILAAAI---ENYISILDVET--QVCRLKLQGH  618 (732)
Q Consensus       556 ---~Dg~I~iWDl~t~~--~i~~~~~~~~--i~~v~~sp~g~~-----ll~~s~---dg~I~IwDl~t--~~~i~~l~~h  618 (732)
                         ....|+.|.+.+..  -...+.....  ......+.++++     ++..+.   ...+++.|...  ++ ...+...
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  289 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMP  289 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSC
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecC
Confidence               12468899886642  2233332222  233445566552     333332   24567777653  33 2233222


Q ss_pred             CCCEEEEEEeCCCCEEEEE-----------eCCeEEEEECCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEEE
Q 004737          619 KNQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       619 ~~~V~sla~spdg~~Lasg-----------sDg~I~IWDl~t~~~~----~~i~~-~-~~~~~~I~sl~fspdg~~L~sg  681 (732)
                      ...  .+....++.+++..           ..+.|.+.|+.+....    ..... + ......+..+.+..+ ..+++.
T Consensus       290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~  366 (711)
T 4hvt_A          290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT  366 (711)
T ss_dssp             TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred             Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence            221  12334455555522           1557889998764210    11112 2 223445777888876 456666


Q ss_pred             EcCC--eEEEEECCCCeE--EE-Ec-cCCCCeeEEEEeCCCC-EEEEEE
Q 004737          682 GCYE--TLELWNMTENKT--LT-LS-AHDKLVSSLAASTVNG-MVASAS  723 (732)
Q Consensus       682 s~dg--~I~IwDl~t~~~--~~-~~-~h~~~V~sla~spdg~-~LaSgs  723 (732)
                      ..++  .|+++|+.++..  .. +. ...+.|..+.+++++. ++++.+
T Consensus       367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s  415 (711)
T 4hvt_A          367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE  415 (711)
T ss_dssp             EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred             EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence            6666  578888776642  12 21 1134566666666665 444443

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=85.85  E-value=34  Score=35.15  Aligned_cols=225  Identities=9%  Similarity=0.020  Sum_probs=116.9

Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCcee--------EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC---
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN---  567 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~--------~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl---~t---  567 (732)
                      |+..++++.+.+|.|+--.+.+-....        ..+..+ +.+..+........++ ..+..|.++-+..   ..   
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~   78 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR   78 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence            345678889999999877765421100        112222 3344444333334455 4445777665543   22   


Q ss_pred             ---Ceeee---EEeccCCeeEEEEe---CCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCCC
Q 004737          568 ---GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG  631 (732)
Q Consensus       568 ---~~~i~---~~~~~~~i~~v~~s---p~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spdg  631 (732)
                         |..+.   .+.....|..+...   .++.+++.++..|.++...+..       +.....+..+ +.+..+......
T Consensus        79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~  157 (307)
T 1zi0_A           79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE  157 (307)
T ss_dssp             SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred             CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence               22211   12333445555442   3456799999999999987642       2222233333 556555555444


Q ss_pred             CEE-EEEeCCeEEEEECCCCCC----ceeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCe--------E
Q 004737          632 EYL-ASVSDELVRVWSIGSGSK----GECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------T  697 (732)
Q Consensus       632 ~~L-asgsDg~I~IWDl~t~~~----~~~i~~~~-~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~--------~  697 (732)
                      ..| +...+|.+..++...-..    ..-+..+. ..+..|..+....++..+++.+..|.++-.++....        .
T Consensus       158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~  237 (307)
T 1zi0_A          158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV  237 (307)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred             CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence            444 444488887777643211    01111111 134556666655566779999999988888763321        1


Q ss_pred             E--EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          698 L--TLSAHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       698 ~--~~~~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      .  .+..-.+.+..+....+..-|+..+.+|.+.
T Consensus       238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i  271 (307)
T 1zi0_A          238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV  271 (307)
T ss_dssp             ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred             EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence            1  2222334555555444445555566666543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=83.62  E-value=40  Score=34.08  Aligned_cols=194  Identities=11%  Similarity=0.012  Sum_probs=108.0

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEE---EcCCCeEEEEeccCCCceEEEEEcC-CCCeEEEEeCCCeEEEEecCCCC-
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD-  525 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VW---d~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasgs~Dg~I~IWDl~s~~-  525 (732)
                      +.|.++.......+|+..+.+|.++--   ++..+.....+. ....|..+.... +..+++.++.+|.|+...+..-. 
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~  102 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY  102 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence            456555555555566667777776643   333221111133 345566664421 46789999999999999876531 


Q ss_pred             ----ceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEEeccCCeeEEEEeCCCCEE
Q 004737          526 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       526 ----~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---------~~~i~~~~~~~~i~~v~~sp~g~~l  592 (732)
                          .....+.. .+.+..+........++ ..+..|.+..++...         |.....+.....+..+....++..+
T Consensus       103 ~~~G~~~i~lke-gD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l  180 (276)
T 3no0_A          103 KAQGMPIIKLTE-GDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL  180 (276)
T ss_dssp             CSTTEECSCCCT-TCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred             hcCCeEEEecCC-CCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence                11112332 34566655554434444 566688888887532         2222223334556666666667789


Q ss_pred             EEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCC-CCEEEEEeCCeEEE--EECC
Q 004737          593 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS-GEYLASVSDELVRV--WSIG  648 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spd-g~~LasgsDg~I~I--WDl~  648 (732)
                      +..+..|.++...+..       ++-+..+ ...+.+..+....+ ..+++...+|.+..  ++..
T Consensus       181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            9999999998887642       2222223 23344555443333 33444444777666  6654

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=82.96  E-value=53  Score=34.99  Aligned_cols=227  Identities=5%  Similarity=0.018  Sum_probs=117.4

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-----------eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  562 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-----------~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~i  562 (732)
                      .|..|+..  ..+.+.-..||.|..|-......           ..-........|..|+...   ...+.-..||.|+.
T Consensus        76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~  150 (423)
T 3mvd_K           76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA  150 (423)
T ss_dssp             SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred             CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence            46666654  44666667899999996532110           0001111234566666543   33334567999999


Q ss_pred             EEC--CC-Cee--------eeEEec--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC--------------------
Q 004737          563 WSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ--------------------  609 (732)
Q Consensus       563 WDl--~t-~~~--------i~~~~~--~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~--------------------  609 (732)
                      |-.  .. +++        ......  ...|..++.  ...+.++...+|.|+.|=....                    
T Consensus       151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~  228 (423)
T 3mvd_K          151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR  228 (423)
T ss_dssp             EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred             EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence            985  22 221        111111  223444444  3467778888999999953211                    


Q ss_pred             ---eEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCC--------CceeEEEeecCCCceEEEEEeCCCCEE
Q 004737          610 ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSL  678 (732)
Q Consensus       610 ---~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~--------~~~~i~~~~~~~~~I~sl~fspdg~~L  678 (732)
                         .+..........|..|+......+++...++.|+.|-.....        ..............|..++.  ...+.
T Consensus       229 ~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht  306 (423)
T 3mvd_K          229 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHT  306 (423)
T ss_dssp             TTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEE
T ss_pred             cccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeE
Confidence               111111122345666665533222222248888888654311        01111122222344554443  34556


Q ss_pred             EEEEcCCeEEEEECCCC-------------eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          679 LVIGCYETLELWNMTEN-------------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t~-------------~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                      ++...++.|+.|-....             .+..+..-...|..|+....  +.+....||.|+.|
T Consensus       307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~w  370 (423)
T 3mvd_K          307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSW  370 (423)
T ss_dssp             EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred             EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEE
Confidence            77788899999965321             11122222336777776543  33444688999888

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=82.85  E-value=46  Score=34.23  Aligned_cols=190  Identities=11%  Similarity=0.059  Sum_probs=107.7

Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCce------e--EEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCC---C--
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYS------L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G--  568 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~------~--~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t---~--  568 (732)
                      ++..++++.+.+|.|+-..+..-...      .  ..+... +.+..+........++ ..+..|.++-+....   .  
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence            46678899999999998876542110      1  112322 3444444444434444 556688877766531   1  


Q ss_pred             ----ee---eeEEeccCCeeEEEEeC---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEeCCC
Q 004737          569 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG  631 (732)
Q Consensus       569 ----~~---i~~~~~~~~i~~v~~sp---~g~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~V~sla~spdg  631 (732)
                          ..   ...+.....+..+...+   +..+++.++..|.++...+..       +.....+.. .+.+..+......
T Consensus        84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~  162 (312)
T 1suu_A           84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD  162 (312)
T ss_dssp             ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred             cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence                11   11122334455554433   457899999999999887743       222223433 4566666655544


Q ss_pred             CEEEEEe-CCeEEEEECCCC----CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 004737          632 EYLASVS-DELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  694 (732)
Q Consensus       632 ~~Lasgs-Dg~I~IWDl~t~----~~~~~i~~~~~-~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t  694 (732)
                      ..|+..+ +|.+..+....-    ....-+..+.- .+..|..+....++..+++.+..|.++..++..
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            5555555 898888887542    11111222221 245566666666667799999999988888754

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=82.46  E-value=53  Score=34.65  Aligned_cols=225  Identities=11%  Similarity=0.075  Sum_probs=116.3

Q ss_pred             CEEEEEECCCcEEEEEcCC-----------CeEEEEecc-CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCC-----
Q 004737          463 KLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----  525 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~-h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~-----  525 (732)
                      ...+.-..||.|+.|-...           ......+.. ....+..++++....+.+.-..||.|..|-.....     
T Consensus        63 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g  142 (389)
T 3kci_A           63 QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG  142 (389)
T ss_dssp             TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSS
T ss_pred             CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCC
Confidence            3445556678888884321           011122222 22345666777666777777889999999643211     


Q ss_pred             ----c-eeEEeec-CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-e--------ee--eEEec--cCCeeEEEEe
Q 004737          526 ----Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-S--------CA--GVFKC--QSGATQMRFQ  586 (732)
Q Consensus       526 ----~-~~~~l~~-h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~--------~i--~~~~~--~~~i~~v~~s  586 (732)
                          . ....+.. ....|..|+.-.   ...+.-..+|.|+.|-.... +        ..  ..+..  ...+..++..
T Consensus       143 ~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G  219 (389)
T 3kci_A          143 NRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG  219 (389)
T ss_dssp             SCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred             CCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence                0 0111111 122566666542   33334556999999975421 0        11  11111  1235555554


Q ss_pred             CCCCEEEEEEcCCeEEEEECCC----------C-eEEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC----
Q 004737          587 PRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG----  650 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t----------~-~~i~~l~~-h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~----  650 (732)
                      ....+.++...+|.|+.|-...          . .....+.. ....|..|+...+ ..++...||.|+.|=....    
T Consensus       220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG  298 (389)
T 3kci_A          220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLG  298 (389)
T ss_dssp             CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTC
T ss_pred             CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCC
Confidence            4346778888999999996432          1 11122222 2234666665432 2333344889999975431    


Q ss_pred             --CCce--eEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          651 --SKGE--CIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       651 --~~~~--~i~~~~-~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                        ....  ....+. .....|..++.  ...+.++...++.|+.|-..
T Consensus       299 ~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n  344 (389)
T 3kci_A          299 HGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDN  344 (389)
T ss_dssp             SSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECC
T ss_pred             CCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCC
Confidence              0001  111111 12234555544  34456777889999999764

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=80.37  E-value=96  Score=36.26  Aligned_cols=144  Identities=11%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             CCceEEEEEcCC-CCeEEEEeCCCeEEEEecCCCCceeEEeecC-------CcceEEEEEcCCCCcEEEEEeCCCc----
Q 004737          492 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE----  559 (732)
Q Consensus       492 ~~~V~~l~fspd-g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h-------~~~V~sl~fspdg~~llaSgs~Dg~----  559 (732)
                      ...|.+|+++|. ...++++...+.|...+  ++......+..+       ...|.+|+++|.....++.+..+..    
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~   91 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   91 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence            468999999985 45667777666654443  222233333321       2469999999864444444432211    


Q ss_pred             EEEE-ECCCCeeeeEEecc--------C--CeeEEEEeCCC-CEEEEEEcCCeEEEEECCCC---eEEEEEc---CCCCC
Q 004737          560 IRYW-SINNGSCAGVFKCQ--------S--GATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQ---GHKNQ  621 (732)
Q Consensus       560 I~iW-Dl~t~~~i~~~~~~--------~--~i~~v~~sp~g-~~ll~~s~dg~I~IwDl~t~---~~i~~l~---~h~~~  621 (732)
                      -.|| ....++.=..+...        .  .+..+++.|.. +.++++...+.|.. ....+   +.+..+.   .....
T Consensus        92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred             cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence            2333 23333322222210        1  24567888754 34555543444322 22222   2221111   11245


Q ss_pred             EEEEEEeCC-CCEEEEEe
Q 004737          622 VHSVCWNTS-GEYLASVS  638 (732)
Q Consensus       622 V~sla~spd-g~~Lasgs  638 (732)
                      +..|.++|. ...|+++.
T Consensus       171 ~~~i~~~p~~~~~~~~~~  188 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASA  188 (789)
T ss_dssp             EEEEEECTTSTTCEEEEE
T ss_pred             eEEEEECCCCCCEEEEEE
Confidence            788999884 34454444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	732
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-33
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-31
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-28
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-27
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-15
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-22
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-20
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-19
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-18
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-18
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-16
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-15
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-09
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	6e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  127 bits (319), Expect = 9e-33
 Identities = 50/286 (17%), Positives = 105/286 (36%), Gaps = 5/286 (1%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
            +K+ + H+  D +LL +   D K ++W + +      +   + W+    ++PS + +A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 510 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566
              D    +++ +  + +    R   GH+  +    F    + +  S D  +   +    
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT-TCALWDIET 173

Query: 567 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 626
                           +   P     ++ A +    + DV   +CR    GH++ ++++C
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233

Query: 627 WNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 686
           +  +G   A+ SD+           +    +          S  F  +   LL       
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293

Query: 687 LELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
             +W+  +      L+ HD  VS L  +     VA+ S D  +KIW
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 1e-19
 Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 44/196 (22%)

Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 512
           V S   +PD +L  +G  D  A LW       + T   H   I  + F P+ +  AT S 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 513 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 571
           D T R+     + +    +       + S+ F  S   LL +  ++     W       A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305

Query: 572 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 631
           GV                                         L GH N+V  +     G
Sbjct: 306 GV-----------------------------------------LAGHDNRVSCLGVTDDG 324

Query: 632 EYLASVS-DELVRVWS 646
             +A+ S D  +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.1 bits (214), Expect = 4e-19
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 496
                Q      S + +  F P+G   ATG  D    L+   +     T         IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 556
            V FS S   L     D    VWD    D       GH   V  L         + +   
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332

Query: 557 NSEIRYWS 564
           +S ++ W+
Sbjct: 333 DSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (304), Expect = 5e-31
 Identities = 66/306 (21%), Positives = 121/306 (39%), Gaps = 28/306 (9%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
            S V    F P   ++ +   D    +W  E+   + TL+ HT  + D+ F  S   LA+
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
            SAD T+++WD +  +                       D + S   +  I+ W +  G 
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSS--VSIMPNGDHIVSASRDKTIKMWEVQTGY 134

Query: 570 CAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWN 628
           C   F       +M    + G ++A+   +  + +  V T+ C+ +L+ H++ V  + W 
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194

Query: 629 TSGEYLASV---------------------SDELVRVWSIGSGSKGECIHELSCTGNKFH 667
               Y +                        D+ +++W +   S G C+  L    N   
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVR 251

Query: 668 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK 726
             +FH     +L     +TL +W+    + + TL+AH+  V+SL        V + S D+
Sbjct: 252 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311

Query: 727 CVKIWK 732
            VK+W+
Sbjct: 312 TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 1e-28
 Identities = 62/270 (22%), Positives = 108/270 (40%), Gaps = 26/270 (9%)

Query: 485 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 544
           K  L  H   +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68

Query: 545 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISIL 604
            S + L     + +   +          +       + +   P    I++A+ +  I + 
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 605 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 663
           +V+T  C     GH+  V  V  N  G  +AS S D+ VRVW + +    EC  EL    
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAELREHR 185

Query: 664 NKFHSCVFHPTFPSLLVIGCY--------------------ETLELWNMTENKTL-TLSA 702
           +      + P      +                        +T+++W+++    L TL  
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 703 HDKLVSSLAASTVNGMVASASHDKCVKIWK 732
           HD  V  +   +    + S + DK +++W 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.9 bits (216), Expect = 2e-19
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 438 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 497
           +         +  +  E+      G  L +G  DK   +W   +     TL  H  W+  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 498 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 557
           V F      + + + D+T+RVWD +N    ++T   H   V SLDFH +    + +   +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

Query: 558 SEIRYW 563
             ++ W
Sbjct: 311 QTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.1 bits (214), Expect = 3e-19
 Identities = 38/209 (18%), Positives = 76/209 (36%), Gaps = 26/209 (12%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 498
           T    +        V     + DG L+A+  +D+   +W   +   K+ L EH   +  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 499 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 558
            ++P  S  + S A  +      +   +                        L S   + 
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPF------------------------LLSGSRDK 227

Query: 559 EIRYWSINNGSCAGVFKCQSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 617
            I+ W ++ G C             + F      IL+ A +  + + D + + C   L  
Sbjct: 228 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 618 HKNQVHSVCWNTSGEYLASVS-DELVRVW 645
           H++ V S+ ++ +  Y+ + S D+ V+VW
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (189), Expect = 5e-16
 Identities = 20/82 (24%), Positives = 35/82 (42%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 498
           T      +    + V    F   GK + +   DK   +W  ++     TL  H  ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 499 RFSPSLSRLATSSADRTVRVWD 520
            F  +   + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 688 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           + W     +   LS H   V+ +    V  ++ SAS D  +K+W
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  112 bits (281), Expect = 2e-27
 Identities = 75/326 (23%), Positives = 123/326 (37%), Gaps = 46/326 (14%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 491
           TS V    FS DG+ LATG  +K   ++     ++ + L +                   
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 551
             +I  V FSP    LAT + DR +R+WD EN               +    +    D L
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--VMILQGHEQDIYSLDYFPSGDKL 178

Query: 552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV 610
            S   +  +R W +  G C+     + G T +   P  G+ +AA  ++  + + D ET  
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 611 CRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------G 653
              +L        GHK+ V+SV +   G+ + S S D  V++W++ + +          G
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAA 712
            C        +   S         +L       +  W+  + N  L L  H   V S+A 
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV 358

Query: 713 STV------NGMVASASHDKCVKIWK 732
           +          + A+ S D   +IWK
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (191), Expect = 6e-16
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 488
           +E +        V S  F+ DG+ + +G  D+   LW  ++   KS            T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 489 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 546
             H  ++  V  + +   + + S DR V  WD ++ +  L    GH  +V+S+       
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363

Query: 547 ---KEDLLCSCDNNSEIRYWSI 565
              + ++  +   + + R W  
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.1 bits (188), Expect = 1e-15
 Identities = 51/277 (18%), Positives = 100/277 (36%), Gaps = 36/277 (12%)

Query: 490 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-----------------DYSLRTFT 532
           +HT  +  V+FS     LAT   ++T +V+   +                  + +  +  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 533 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 592
                + S+ F P  + L    ++     +   N      +   +     + + P   ++
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 593 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 651
           ++ + +  + I D+ T  C L L               G+Y+A+ S D  VRVW   +G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 652 KGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------- 698
             E +   + +G    +  +S VF     S++      +++LWN+               
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 699 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
               T   H   V S+A +  +  + S S D+ V  W
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 5e-15
 Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 45/206 (21%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 508
                DGK +A G  D+   +W +E+  +   L+        H   +  V F+     + 
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568
           + S DR+V++W+ +N +    + T +S T                               
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG------------------------ 306

Query: 569 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 628
                   +     +        IL+ + +  +   D ++    L LQGH+N V SV   
Sbjct: 307 -------HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359

Query: 629 TS------GEYLASVS-DELVRVWSI 647
                       A+ S D   R+W  
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 3e-13
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 503
              V S   + + + + +G  D+  + W  +S      L+ H   +  V         P 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 504 LSRLATSSADRTVRVWDTE 522
            +  AT S D   R+W  +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 1e-09
 Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 39/280 (13%)

Query: 486 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 539
           +    H++ I                    +    +++   P   D  L     H++ V 
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66

Query: 540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA------------------- 580
            + F    E L   C+     + + +++GS        S A                   
Sbjct: 67  CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 640
             + F P  G+ LA   E+ +  +        + +     Q                   
Sbjct: 125 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 641 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---------ETLELWN 691
              V      +    +      G    +    P     +  G           ET  L  
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241

Query: 692 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
             +++  + + H   V S+  +     V S S D+ VK+W
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.8 bits (239), Expect = 3e-22
 Identities = 58/285 (20%), Positives = 106/285 (37%), Gaps = 18/285 (6%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
              V +C     G  + +G  D    +W   +     TL  HT  +   +   ++    +
Sbjct: 16  DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
           +     V   +T    ++L   T     +   +          S   ++ +R W I  G 
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128

Query: 570 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629
           C  V      A +        R+++ A +  + + D ET+ C   LQGH N+V+S+ ++ 
Sbjct: 129 CLHVLMGHVAAVRCVQYDG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD- 186

Query: 630 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 688
            G ++ S S D  +RVW +     G CIH L+   +             L+      T++
Sbjct: 187 -GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVK 240

Query: 689 LWNMTENKTLTLSAHDKLVSS--LAASTVNGMVASASHDKCVKIW 731
           +W++   + L          S           V ++S D  VK+W
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 2e-15
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 18/202 (8%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 515
                DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198

Query: 516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 575
           +RVWD E  +  + T TGH +    ++      ++L S + +S ++ W I  G C    +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 576 CQSGAT--QMRFQPRLGRILAAAIENYISILDVETQVC-----RLKLQGHKNQVHSVCWN 628
             +         Q     ++ ++ +  + + D++T         L+  G    V  +  +
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 629 TSGEYLASVSDE-----LVRVW 645
            +    A  S        + V 
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 455 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 511
           +        +L +G  D    +W     +         +H   +T ++F+ +     TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277

Query: 512 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 563
            D TV++WD +  +  +R        G    V  +    +K        N +E   +   
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 564 SIN 566
             +
Sbjct: 337 DFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 26/202 (12%), Positives = 49/202 (24%), Gaps = 33/202 (16%)

Query: 563 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 622
           W         V K          Q    RI++ + +N + +    T  C   L GH   V
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 623 HSVCWNTSGEYL-------------------------ASVSDELVRVWSIGSGSKGECIH 657
            S     +                             ++V    +    + SGS+   + 
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG 717
                  +    +         V      +          +     +  + +L   T   
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 718 M--------VASASHDKCVKIW 731
                    V S S D  +++W
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVW 202

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (236), Expect = 6e-22
 Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 9/288 (3%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 504
              V +   S   + + TGG      +W       KS + +        +I   +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 564
             L       T+ +WD   P   ++     S              +  SC ++  I  W 
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 624
           ++N +    F+  +           G  L     +         +  +L+     +Q+ S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 625 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 684
           + +  +GE+   ++  +               ++L    +   S  F       +  G  
Sbjct: 230 LGYCPTGEW---LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286

Query: 685 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
             L  W      ++  S     V S   S  +  + + S DK   +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (202), Expect = 1e-17
 Identities = 46/295 (15%), Positives = 84/295 (28%), Gaps = 9/295 (3%)

Query: 443 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501
           FQ    S     S H + DG++       D              +TL  H + +  V  S
Sbjct: 3   FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60

Query: 502 PSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 557
                + T      V+VWD  +P      S          + S    P    L+   + +
Sbjct: 61  NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

Query: 558 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 617
           +   +               S              +  +  +  +I   +     L  Q 
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179

Query: 618 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677
             +   + C + S +     +  L          +G  + +   T     S  + PT   
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPTGEW 238

Query: 678 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
           L V      +E+ ++ +     L  H+  V SL  +       S   D  +  W+
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.0 bits (229), Expect = 7e-21
 Identities = 38/306 (12%), Positives = 81/306 (26%), Gaps = 31/306 (10%)

Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 510
           +    ++ D   +A   ++ +  ++      +     L+EH   +T V ++P  +R+ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 511 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS- 569
             DR   VW  +   +                     E        +  I        + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 570 ----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET----------------- 608
                      +S    + + P    + A + +    I                      
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 609 -QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKF 666
                 +       VH VC++ +G  +A VS +  V +         +       +    
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVATLASETLP 245

Query: 667 HSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 725
              V   T  SL+  G      L+   +    L+      +    +   +       + D
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305

Query: 726 KCVKIW 731
           K     
Sbjct: 306 KKASSE 311

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.3 bits (196), Expect = 9e-17
 Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 25/265 (9%)

Query: 491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 549
             + I+   ++   +++A    +  V +++     +  +     H+  V  +D+ P   +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64

Query: 550 LLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDV 606
            + +C  +     W++   +        +    A  +R+ P   +    +    ISI   
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 607 ET----QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGS---------- 651
           E      VC+   +  ++ V S+ W+ +   LA+ S +   R++S               
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 652 -----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 706
                 GE + E S +    H   F      +  +    T+ L +  +   +   A + L
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 707 VSSLAASTVNGMVASASHDKCVKIW 731
                       + +A HD    ++
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.8 bits (174), Expect = 5e-14
 Identities = 38/320 (11%), Positives = 89/320 (27%), Gaps = 30/320 (9%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 496
            + +   +     +V    ++PD   + T G D+ A +W  +  T K    +    +   
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 497 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 554
            VR++P+  + A  S  R + +     EN  +  +       + +          LL + 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 555 DNNSEIRYWSINNGSCAGVFK-------------------CQSGATQMRFQPRLGRILAA 595
             + + R +S                                     + F     R+   
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 655
           + ++ + + D + ++    L      + +V + T    +A+  D    +++  S +    
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA---G 276

Query: 656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS-- 713
                   +                    +               S H   VS ++    
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336

Query: 714 --TVNGMVASASHDKCVKIW 731
                    +   D  + IW
Sbjct: 337 GKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 515
             F  +  L+A  GHD   VL+  +S   K +                 +R    + D+ 
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 569
                +      L   + H  +V  +       +K    C+   +  +  W + +  
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 505
               +                DKKA    + +         H   ++ +          S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 506 RLATSSADRTVRVWDTENPDYSLRTF 531
           +  T+  D  + +WD  + + +L+  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 616 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 674
                 +    WN     +A    +  V ++   SG+K   +HEL     +     + P 
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 675 FPSLLVIGCYETLELWNM 692
              ++  G      +W +
Sbjct: 63  SNRIVTCGTDRNAYVWTL 80

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (223), Expect = 1e-20
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 30/288 (10%)

Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 517
              D + + +G  D    +W   +   K  L  HT  +  +++   +          +  
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV------IITGSSD 74

Query: 518 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-- 575
                    +            ++        ++ +C  +  I  W + + +   + +  
Sbjct: 75  STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134

Query: 576 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 635
               A           I++A+ +  I + +  T      L GHK  +   C       + 
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVV 192

Query: 636 S-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT 693
           S  SD  +R+W I      EC   L                   +V G Y+  +++W++ 
Sbjct: 193 SGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 694 ENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
                          TL  H   V  L        + S+SHD  + IW
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 31/247 (12%), Positives = 70/247 (28%), Gaps = 51/247 (20%)

Query: 486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 545
               E ++ +  +++     ++ +   D T+++WD    +   R  TGH+ +V+ L +  
Sbjct: 9   HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65

Query: 546 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 605
                  S          +    +            +      +      +I  +  +  
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW-DMAS 124

Query: 606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 665
                 R  L GH+  V+ V ++      AS  D  ++VW+  +    E +  L+     
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSAS-GDRTIKVWNTSTC---EFVRTLNGHKRG 180

Query: 666 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 725
                +                                              +V S S D
Sbjct: 181 IACLQYRDR-------------------------------------------LVVSGSSD 197

Query: 726 KCVKIWK 732
             +++W 
Sbjct: 198 NTIRLWD 204

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 506
                D K + +G +D K  +W   +              TL EH+  +  ++F     +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279

Query: 507 LATSSADRTVRVWD 520
           + +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.5 bits (212), Expect = 8e-19
 Identities = 36/299 (12%), Positives = 88/299 (29%), Gaps = 19/299 (6%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
            + V +C    +   + TG  DK   ++ + +      L  H   +  ++++     L +
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 510 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
            S DRTVRVWD +    +      +ST              + +   ++ +  W +   S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 570 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 629
                  +     +   P         +  +++ +   +    + + G  +    V    
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189

Query: 630 SGEYLASVSDELVRVWSIGSGSKGECI-----------------HELSCTGNKFHSCVFH 672
             + L  +S    R++S     + +                     +             
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249

Query: 673 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
                 LV    +         + +   S H   +S++    V+  +  +  +    I+
Sbjct: 250 RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 6/193 (3%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 515
              S  G ++ +G +D   ++W          L  HT  I    +     R  ++S D T
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 516 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 575
           +R+WD EN +         +   +                           N        
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKF-----LVSAAADGSIRGWDANDYSRKFSY 279

Query: 576 CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYL 634
             +  + +        IL +  EN  +I ++ + ++    +    +Q+ SV +       
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339

Query: 635 ASVSDELVRVWSI 647
           A   D    +  +
Sbjct: 340 AVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 6/90 (6%), Positives = 24/90 (26%)

Query: 477 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 536
              ++         H   ++ +        +  S ++    +++  +           + 
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566
            + S++F           D  S +     +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 511
                F     +L +G  + +  ++   S   V + + +    I  V F    + +A   
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342

Query: 512 ADRTVRVWD 520
            D    +  
Sbjct: 343 KDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 3e-06
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 612 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 670
           R  L+GH   V + C      Y+ + + D+++RV+        + + +LS       +  
Sbjct: 5   RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALK 60

Query: 671 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV----ASASHDK 726
           +      +LV G  +        +    T        +      V         + S D 
Sbjct: 61  YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 727 CVKIWK 732
            + +WK
Sbjct: 119 TLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 35/273 (12%), Positives = 73/273 (26%), Gaps = 49/273 (17%)

Query: 460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRV 518
           P    +   G +    L           +      +  VR       +  + S D T+ V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 578
           WD           +GH+  + S  +   ++  + +  + + IR W + NG      +  +
Sbjct: 186 WDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHT 243

Query: 579 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 638
               +        + AAA  +       +          H N      +  S   L S S
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS--YHHTNLSAITTFYVSDNILVSGS 301

Query: 639 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 698
           +    ++++ S   G+ +H                                         
Sbjct: 302 ENQFNIYNLRS---GKLVHA---------------------------------------- 318

Query: 699 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
            +      + S+       +VA+   D    + 
Sbjct: 319 NILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.4 bits (209), Expect = 1e-18
 Identities = 37/312 (11%), Positives = 86/312 (27%), Gaps = 26/312 (8%)

Query: 447 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 501
           P++  +      + P    +A        V       ++   V       +  +T V+FS
Sbjct: 13  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 502 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 551
           P      L +      V VW       S          F   +  +  + +    +   +
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 611
                ++   + S ++G+  G     S         +   + +  + +  S++  +    
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192

Query: 612 RLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 666
           +            + V  V ++              ++      S     +         
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252

Query: 667 HSCVFHPTFPSLLVIGCYE--TLELWNMTENK---TLTLSAHDKLVSSLA-ASTVNGMVA 720
                     S          T+ +W++T +K     TL         +   +T NG + 
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312

Query: 721 SASHDKCVKIWK 732
           S S D  +  ++
Sbjct: 313 SLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 3e-07
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 505 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRY 562
            + AT  AD T+RVWD       ++ +T     +    +    +    + S   +  + +
Sbjct: 264 QKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 563 WSI 565
           + +
Sbjct: 323 YEL 325

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 83.5 bits (204), Expect = 4e-18
 Identities = 36/286 (12%), Positives = 82/286 (28%), Gaps = 6/286 (2%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 508
              + +   S DGK L +   +     W   +        + H   IT ++ +     L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70

Query: 509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568
           T S D  ++V               +  +   L    S +  +        I  +S    
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 569 SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 628
           +   +    S       +  +      +  +   +        +  +   +    +   N
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190

Query: 629 TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 688
            +       S + V  +S+ +  +    +  +    K     + P    L       ++ 
Sbjct: 191 GAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 689 LWNM---TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
           +WNM   +++  +   AH     +         + SA  D  +K W
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (114), Expect = 9e-07
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 513
             +SPD   LATG  D   ++W     +    +    H     +     + + + ++  D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 514 RTVRVWD 520
             ++ W+
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 8e-05
 Identities = 10/132 (7%), Positives = 33/132 (25%), Gaps = 3/132 (2%)

Query: 519 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 578
                 +          T+V   +          S          +             +
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225

Query: 579 GATQMRFQPRLGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLAS 636
               + + P   R+   +++N + + ++        +    H     +     +   + S
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVS 285

Query: 637 VS-DELVRVWSI 647
              D  ++ W++
Sbjct: 286 AGQDSNIKFWNV 297

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.7 bits (205), Expect = 6e-18
 Identities = 34/317 (10%), Positives = 73/317 (23%), Gaps = 27/317 (8%)

Query: 443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 499
            Q+  A    +      P   LL     D    ++  +       L     +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 500 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 559
           F  +          +   +        S +  T +   +         +D L +   +  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 560 IRYWSINNGSCAGVFKCQSGATQMRFQPRL-------GRILAAAIENYISILDVETQVCR 612
           I      N     +      +   + + ++        R++     + +    +      
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 613 LKLQGHKN----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 655
                                  E  A  S D  V V                       
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 656 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 715
             + +      +S  F P    L   G    +  WN+   K +   A     S +  +  
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303

Query: 716 NGMVASASHDKCVKIWK 732
           + ++  A+ D   K   
Sbjct: 304 DNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 13/132 (9%), Positives = 39/132 (29%), Gaps = 18/132 (13%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 500
                + +  A    D +  +   +                  +          +  + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 501 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560
           SP    L T+ +D  +  W+ +     ++ F   +     +    S +++LC   ++   
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACS-DNILCLATSDDTF 316

Query: 561 RYWSINNGSCAG 572
           +  +  + +   
Sbjct: 317 KTNAAIDQTIEL 328

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 18/155 (11%), Positives = 42/155 (27%), Gaps = 20/155 (12%)

Query: 512 ADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 569
            +  V+ +       D      +G    +  +   P +++       +  +     ++  
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 570 CAGVFKCQSGATQMR----------------FQPRLGRILAAAIENYISILDVETQVCRL 613
                  +      R                F PR   +  A  +  IS  +++T+    
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 614 KLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 647
                 N+   V    S   L    SD+  +  + 
Sbjct: 288 NFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.9 bits (200), Expect = 1e-17
 Identities = 39/301 (12%), Positives = 87/301 (28%), Gaps = 13/301 (4%)

Query: 443 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 501
           F  +P +          +P G  +    +          S T      EH+   T  + S
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 502 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 560
           PS    A+      VR+WDT    + L+T     S  V  + +    + +    +     
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 561 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 620
            +  + +   +                +  R       +  + + +              
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 621 QVHSVCWN----TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 676
               V           + ++  D  + +++   G+K     + S         VF  T+ 
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 677 ---SLLVIGCYE-TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKI 730
              + +     + T+++WN+   K   T+    ++    L        + S S +  +  
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 731 W 731
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.7 bits (145), Expect = 1e-10
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 514
             +SPDG  +A+   DK   +W   +  V+ T+   T+     +    +   L + SA+ 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 515 TVRVWDTE 522
            +   + E
Sbjct: 304 FINFVNPE 311

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.9 bits (187), Expect = 6e-16
 Identities = 34/289 (11%), Positives = 80/289 (27%), Gaps = 54/289 (18%)

Query: 487 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 546
           T+  H + IT +  +P    L + S D  +  W + +          HS  ++SLD   +
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57

Query: 547 KEDLLCSCDNNSEIRYWSINNGS--------------------------------CAGVF 574
           +E    S D+  ++   + +                                        
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117

Query: 575 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 634
           +  S  + +        +              + +V        + +   +  + S  Y+
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177

Query: 635 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--------- 685
           A+       +       + +       T              +       +         
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237

Query: 686 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 732
            + ++++     +   L+AH   V++L   T    + S+  D C+K W 
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.9 bits (135), Expect = 2e-09
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 477 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 536
                 +  + +                  +AT S D  + ++  + P   ++    H  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 565
            V +L +       L S   ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 611
                  +   W+        +    +       +     +   +++  I I  V+  + 
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249

Query: 612 RLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 647
            +K L  HK+ V+++ W T    ++S +D  ++ W++
Sbjct: 250 IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 528 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 571
           L+T +GH+  + +L  +P     L S   +  I  WS ++    
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 23/318 (7%), Positives = 69/318 (21%), Gaps = 47/318 (14%)

Query: 458 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 515
                + +    +     +    S TV  +              +P        ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 516 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----------E 559
           +   D +    +              ++ S    P  +++  + +               
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 560 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 619
           +  +S  +G  A   +      Q+                 I  +DV+T    + L    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 620 -------------------------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 653
                                           +    +  A+           +     G
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL---KTG 240

Query: 654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 713
           +   +      + +            + G    L  +++ + K +  +  D     +A  
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFD 300

Query: 714 TVNGMVASASHDKCVKIW 731
                +        + ++
Sbjct: 301 KKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.7 bits (117), Expect = 6e-07
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 509
           T    +   SP       G  ++ A  +  +   +             V F     +L  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308

Query: 510 SSADRTVRVWDTE 522
                 + V++ +
Sbjct: 309 GGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 6e-05
 Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 5/125 (4%)

Query: 456 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 514
             F  D +  AT       +    ++         + T+       SP          + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272

Query: 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574
            +  +D +           H  T   + F     D L      +++  ++ +        
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 575 KCQSG 579
           K   G
Sbjct: 330 KLPGG 334

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 75.3 bits (183), Expect = 5e-15
 Identities = 25/299 (8%), Positives = 63/299 (21%), Gaps = 30/299 (10%)

Query: 458 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 514
           FSP DG L+A     +  +   + ++ +K         I  VR                 
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 574
            + ++D          F  +   V ++    + +  + + D    +              
Sbjct: 67  FLGIYDYRTG--KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 575 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR---------LKLQGHKNQVHSV 625
             ++  T          I       +        Q                   +  ++ 
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184

Query: 626 CWNTSGEYLASVS-DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLV 680
            ++   + L  +S   L         +           +       +     P   +   
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 681 IGCYETLELWNMTENKT--------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
                       +            + L +   + S             A     +  +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 71.0 bits (172), Expect = 9e-14
 Identities = 23/305 (7%), Positives = 57/305 (18%), Gaps = 24/305 (7%)

Query: 448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 507
               ++       D K+    G  +   L   +  T K+   E               + 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 508 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC---------SCDNNS 558
           A  + DR   +                   +       +   +                 
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 559 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR------ 612
            I  + +            S      F      +   +  +     D             
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219

Query: 613 -LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH---- 667
              +       +            +   +L  ++   S    +          +      
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279

Query: 668 -SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 726
              V                L  +++   K   +  +   ++ L  S     V     D 
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKDDG 336

Query: 727 CVKIW 731
            +  +
Sbjct: 337 KIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.2 bits (149), Expect = 7e-11
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 498
            +     + +S                         + +  +       + E    +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320

Query: 499 RFSPSLSRLATSSADRTVRVWDTENPD 525
           R S     +     D  +  +  E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 19/250 (7%), Positives = 53/250 (21%), Gaps = 19/250 (7%)

Query: 498 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDN 556
             FSP    L    +     + D      +          +  +      +         
Sbjct: 8   EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64

Query: 557 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 616
              +  +    G      +       M         + A     I  +D+ET    +  +
Sbjct: 65  GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 617 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-------KGECIHELSCTGNKFHSC 669
             +  +     + +  ++A                       +G  I   +   +  ++ 
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184

Query: 670 VFHPTFPSLLVIGCYETLELWN--------MTENKTLTLSAHDKLVSSLAASTVNGMVAS 721
            F     +L  +         +           +K   +       +       +    +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 722 ASHDKCVKIW 731
             +D      
Sbjct: 245 GEYDLNDMYK 254

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 28/260 (10%), Positives = 69/260 (26%), Gaps = 65/260 (25%)

Query: 483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 531
              +  + H   I  V    S     + S D  ++VWD +  D           +  ++ 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 532 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 591
             H   + +++    +  L+ +   + ++ ++ I           +              
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL---------- 112

Query: 592 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 651
                                L     K+   ++ W  S + L                 
Sbjct: 113 ---------------------LDSDMKKHSFWALKWGASNDRL----------------- 134

Query: 652 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA 711
                H L  T  K  + ++     +                +    +     +  +S+ 
Sbjct: 135 ---LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191

Query: 712 ASTVNGMVASASHDKCVKIW 731
            S   G++A+  ++  V+I 
Sbjct: 192 ISE-RGLIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 9e-12
 Identities = 34/315 (10%), Positives = 75/315 (23%), Gaps = 45/315 (14%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 503
            + + S           +   D    +W  +    ++  ++      H   +  V    +
Sbjct: 14  DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 504 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 556
           + R       +AT+S    +  +     D   +        ++  D        L    +
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 557 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 616
           N  +    +      G                L                +E Q       
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSL---------TLNWSPTLELQGTVESPM 181

Query: 617 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH--------- 667
                  SV  +  G      ++  V++  + +              N  +         
Sbjct: 182 TPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 668 -----------SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVN 716
                      +     T           +L +   +   +L   AH   V SL+ +   
Sbjct: 242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301

Query: 717 GMVASASHDKCVKIW 731
             + SA  D  ++ W
Sbjct: 302 ETLCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 9e-08
 Identities = 36/256 (14%), Positives = 75/256 (29%), Gaps = 51/256 (19%)

Query: 451 SKVESCHFSPDG-----KLLATGGHDKKAVLWCTESFTVKS------------------T 487
               +  +           L          +W    F  +S                  +
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179

Query: 488 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-----TENPDYSLRTFTGHSTTVMSLD 542
               +Q+ T V  S     +AT   + TV++ +           S  +   +S ++ S+ 
Sbjct: 180 PMTPSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 543 FHPSKEDLLCSCDNNSEIRY----------------WSINNGSCAGVFKCQSGATQMRFQ 586
           F P    L  + D+NS                     + ++ +  G F   S    + F 
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298

Query: 587 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV----HSVCWNTSGEYLASVSDELV 642
                + +A  +  +   DV+T+     L  H + +      +  +  G+ LA     + 
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG--VF 356

Query: 643 RVWSIGSGSKGECIHE 658
            V  +  G +     +
Sbjct: 357 DVKFLKKGWRSGMGAD 372

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 450 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 505
           +S V S  F+  G+ L + G D K   W  ++    +TL  H   I      +       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 563
            LA         V+D +      R+  G              E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 32/309 (10%), Positives = 72/309 (23%), Gaps = 44/309 (14%)

Query: 463 KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRL-ATSSADRTVRVW 519
             +       K V+  TE   V   +   +          +P      AT +   ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 520 DTENP----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-----------WS 564
           D           L T      ++      P  + L                       + 
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 565 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------- 617
               S    F+     T + +     ++     + ++   +  T V    +Q        
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 618 --------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 662
                                       +     +    +    + +G     + E+   
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIM 239

Query: 663 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 722
              + S   +P        G Y  LE +++ +N ++          S+  ST    V   
Sbjct: 240 DVFYFSTAVNP--AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 723 SHDKCVKIW 731
                +  +
Sbjct: 298 GALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 9e-08
 Identities = 16/193 (8%), Positives = 47/193 (24%), Gaps = 26/193 (13%)

Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---------------------H 491
           +    ++ DG  L   G D   +     +      ++                       
Sbjct: 137 ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG 196

Query: 492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 551
                       +     ++    +   D E  + ++R          S   +P+K    
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF 256

Query: 552 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q 609
            + +    +  + +   +             +        +        ++  D ET  +
Sbjct: 257 GAYNV---LESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 610 VCRLKLQGHKNQV 622
             ++ L G+ +  
Sbjct: 314 KGQVDLPGNASMS 326

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 439 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 498
                + +P   S   S + S DG  +  GG       +  E+   K  ++        +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

Query: 499 RFSPSLSR 506
                 +R
Sbjct: 328 ASVRLFTR 335

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 61.3 bits (148), Expect = 2e-10
 Identities = 28/298 (9%), Positives = 75/298 (25%), Gaps = 27/298 (9%)

Query: 458 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 515
              D +     T     +  L    ++ +K+ L+     +   R S S   L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84

Query: 516 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 571
           V + D    +      ++  +   +   S       +  +       +            
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 572 GVFKCQSGATQMRFQPRLGRILAAAI-------------ENYISILDVET-QVCRLKLQG 617
            +   +      +      R+ A                   I ++D       +     
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204

Query: 618 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 677
            +  +H    + S  Y  + ++   ++  I   +K   +  +  TG +         F  
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVI--DTKEGKLVAIEDTGGQTPHPGRGANFVH 262

Query: 678 LLVIGCYETLELWN----MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 731
                 + T  + +    +          +   +     +   G +   +H     ++
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.3 bits (135), Expect = 6e-09
 Identities = 36/304 (11%), Positives = 71/304 (23%), Gaps = 37/304 (12%)

Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 507
           V     S  G+ L   G D K  +         +  E     E     T           
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 508 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 566
            A +       + D E  +   +  +    T    ++HP          +       ++ 
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182

Query: 567 NGSCAGVFKCQSGATQMRFQPRLGR-------------ILAAAIENYISILDVETQVCRL 613
                 +            +    R              + AA      ++    +   +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242

Query: 614 KLQGHKNQVHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 667
            ++    Q               G   A+       V  IG+  +G   +       K  
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN-----AWKIL 297

Query: 668 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 727
                    SL +     +  L+        TL+   ++  S+A   +   +     D  
Sbjct: 298 DSFPALGGGSLFIKTHPNSQYLYVDA-----TLNPEAEISGSVAVFDIK-AMTGDGSDPE 351

Query: 728 VKIW 731
            K  
Sbjct: 352 FKTL 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.2 bits (131), Expect = 1e-08
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)

Query: 432 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 491
           AE   G+    +Q +    +                    +  V+   ++    +  E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298

Query: 492 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 546
              I  +  S     L  A S+ D+T+ + D E+ +  LR+          +     
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 21/301 (6%), Positives = 68/301 (22%), Gaps = 35/301 (11%)

Query: 449 STSKVESCHFSPDGKLLAT----------GGHDKKAVLWCTESFTVKSTLEEHTQWITDV 498
               + +   + DG  +A           G       ++   +    + +E        V
Sbjct: 45  DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104

Query: 499 RFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 552
              P +   + +   +T+  +           D   + F             P+  D   
Sbjct: 105 GTYPWM--TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162

Query: 553 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCR 612
               +  +   +        +   +        +  +     +     +       ++ +
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVF--HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQ 220

Query: 613 LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 672
           + L     +        +                   G +     +++         +  
Sbjct: 221 IDLSSGDAKFLPAVEALT-------------EAERADGWRPGGWQQVAYHRALDRIYLLV 267

Query: 673 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKI 730
                         + + +    + L        + S+  S      + A ++ DK + I
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYI 327

Query: 731 W 731
            
Sbjct: 328 H 328

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 25/269 (9%), Positives = 71/269 (26%), Gaps = 8/269 (2%)

Query: 467 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 525
                    +    S  V +T+   +        SP  +++   ++    V + DT   +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 526 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRF 585
                  G S   +++     +     +   +S +      + + AG  K       +  
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVY--VTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 586 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW 645
            P   ++      +    +        +           +     G  +   + + + + 
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 646 SIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD 704
            I + +             +               V   + T+ + +   NK        
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 705 KLVSSLAASTVNG--MVASASHDKCVKIW 731
              + +A +  +G  +  + S    V + 
Sbjct: 244 PDPAGIAVTP-DGKKVYVALSFCNTVSVI 271

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 477 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 523
             T +  + + +         +  +P   ++    S   TV V DT  
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 25/244 (10%), Positives = 63/244 (25%), Gaps = 6/244 (2%)

Query: 458 FSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 516
            SPDG  +     H     +  T +  V +T+   +                T+ A  T+
Sbjct: 39  ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTL 98

Query: 517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 576
            V D      ++        + + L   P  + L  + + +  +   +    +       
Sbjct: 99  SVID--TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156

Query: 577 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLA 635
                 +   P   ++  A  ++    +        +     +             +   
Sbjct: 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYV 216

Query: 636 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTE 694
           +  D+     S+      +    +   G         P    + V   +  T+ + +   
Sbjct: 217 TNVDKYFNTVSMIDTGTNKITARIP-VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

Query: 695 NKTL 698
           N   
Sbjct: 276 NTIT 279

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.9 bits (110), Expect = 7e-06
 Identities = 16/187 (8%), Positives = 34/187 (18%), Gaps = 6/187 (3%)

Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 507
           V     S  G+ L   G D +  +    +       E     E     +           
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 508 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSIN 566
              +                 +  +    TV +  +HP      + +   + E       
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

Query: 567 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 626
            G    V         +        +     ++                           
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243

Query: 627 WNTSGEY 633
               G+ 
Sbjct: 244 LVDVGKT 250

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 28/277 (10%), Positives = 73/277 (26%), Gaps = 36/277 (12%)

Query: 435 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------------CTESF 482
            +     E ++   + S   S     + +    G +                    T   
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 483 TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSL 541
           TV +        +  +  S        +  +   V + + ++ D    T  G +  +   
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 542 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMR----FQPRLGRILAAAI 597
            +  S    + + +N++++      +   + +          R      P+ G + + + 
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272

Query: 598 ENYISILDVETQVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS--------DE 640
               SI  + T               LQG       +  +    +L   +         +
Sbjct: 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 332

Query: 641 LVRVWSIGSGSKGECI--HELSCTGNKFHSCVFHPTF 675
            V V+ + +      +          +    V  P +
Sbjct: 333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 8e-04
 Identities = 29/231 (12%), Positives = 54/231 (23%), Gaps = 21/231 (9%)

Query: 509 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 568
           T      + + D ++    ++        V       S   LL    +   I    +   
Sbjct: 37  TLRDAGQIALVDGDS-KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDAR-IDMIDLWAK 93

Query: 569 SCAGV--FKCQSGATQMRFQPRL---GRILAAA--IENYISILDVETQVCRLKLQGHKNQ 621
               V   K    A  +          R   A        +I+D ET   +  +      
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 622 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 681
           V +  ++                  I S    E I  +  TG             ++  I
Sbjct: 154 VDTQTYHPEPR----------VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 682 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM-VASASHDKCVKIW 731
           G    L       +    ++A +         + +    A     K     
Sbjct: 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 0.001
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 453 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 508
           V S     DG +   G   K        ++   + L+        ++  P  S L     
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323

Query: 509 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 554
               +   ++V V+D +N        P          +  V+  +++   +++  S    
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 555 -DNNSEIRYW 563
            +++S +   
Sbjct: 384 KNDSSALVVV 393

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 36/330 (10%), Positives = 74/330 (22%), Gaps = 48/330 (14%)

Query: 447 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITD 497
            AS             +     L A      +  + C                       
Sbjct: 16  AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75

Query: 498 VRF----SPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVM----SLDFHPSK 547
                  S S +R A       V V+D     P   +        +V      +    S 
Sbjct: 76  GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135

Query: 548 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 607
             LL     +S     S+   S   + K  S             + +       S L   
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195

Query: 608 T----QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG 663
                 V             +   N  G  + +V+   +    I +         +    
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNE 253

Query: 664 NKFHSCVFHPTFPSLLVIGC-------------------YETLELWNMTENKTLTLSAHD 704
           +   +  F      ++                        E       +  +T    ++ 
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 705 KLVSSLAASTVNG---MVASASHDKCVKIW 731
               ++ A+  +G     A+++  + + I+
Sbjct: 314 HDSDAIIAAQ-DGASDNYANSAGTEVLDIY 342

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)

Query: 509 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 567
            S   + + VW+       +L         V  +   P K  L         +  + I  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 568 GSCAGVF 574
              A  F
Sbjct: 69  DDGALTF 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	732
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.53
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.39
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.36
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.36
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.22
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.22
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.15
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.12
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.06
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.06
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.95
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.7
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.62
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.38
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.12
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.1
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.05
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.02
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.94
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.59
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.58
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.5
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.5
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.39
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.28
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.27
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.27
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.22
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.09
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.06
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.84
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.65
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.3
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.54
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	95.54
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.98
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.67
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.06
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.22
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.19
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.1
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.74
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	89.81
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	88.7
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	87.05
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.59
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	84.34

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.6e-40  Score=336.25  Aligned_cols=285  Identities=25%  Similarity=0.473  Sum_probs=263.8

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      ..+|+||.+.|++|+|+|++++||+|+.||+|+|||+++++.+.++.+|...|.+++|++++.++++++.++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcCCeE
Q 004737          523 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI  601 (732)
Q Consensus       523 s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~dg~I  601 (732)
                      ... ....+.+|...+.++.|++++. .+++++.|+.+++||+++++.+..+.. ...+.+++|++++..+++++.|+.|
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          90 GFE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             SSC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccc-cccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            765 4667788999999999999975 455888999999999999998888874 4568899999999999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCC--------------------CEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--------------------EYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg--------------------~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      ++|++.++.....+.+|...+.+++|+|++                    .++++++ |+.|++||+.++   .++..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~  244 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV  244 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEe
Confidence            999999999999999999999999998753                    4677888 999999999987   7888899


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .|...|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||.|+|||
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999998877 7779999999999999999999999999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-39  Score=340.69  Aligned_cols=284  Identities=17%  Similarity=0.237  Sum_probs=251.1

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE-----EEEeccCCCceEEEEEcCCCCeEEEEeCCCe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSSADRT  515 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~-----~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~  515 (732)
                      +.+.++ .|...|+|++|+|+|++||+|+ ||.|+|||+.+...     .....+|.+.|.+++|+|++++|++|+.||+
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            445555 7999999999999999999987 89999999976432     2334579999999999999999999999999


Q ss_pred             EEEEecCCCCc-eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEE
Q 004737          516 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRIL  593 (732)
Q Consensus       516 I~IWDl~s~~~-~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll  593 (732)
                      |++||+..... ....+..|...|.+++|+|++ .++++++.|+.|++||+.++++...... ...+.+++|++++..++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999976543 345678899999999999986 5666899999999999999988877664 56699999999999999


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEe
Q 004737          594 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  672 (732)
Q Consensus       594 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fs  672 (732)
                      +++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++ |+.|++||++...   . .....|...|.+++|+
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~---~-~~~~~~~~~i~~v~~s  274 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD---K-YQLHLHESCVLSLKFA  274 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---E-EEECCCSSCEEEEEEC
T ss_pred             cccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccc---c-ccccccccccceEEEC
Confidence            99999999999999999887775 889999999999999999988 9999999998763   3 3456688999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          673 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       673 pdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |++++|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++|+.||.|+|||
T Consensus       275 ~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         275 YCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            999999999999999999999999997778999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-38  Score=327.32  Aligned_cols=287  Identities=18%  Similarity=0.362  Sum_probs=254.3

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      +..++|+||.+.|+||+|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++|+.|+.|++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCc---eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEE
Q 004737          521 TENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       521 l~s~~~---~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      ......   ....+.+|...+....+..+  ..++.+..+.....|+........... ....+....+.+....+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            875432   34466778877777666654  455577778999999988776655544 445688899999999999999


Q ss_pred             cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe--ecCCCceEEEEEeC
Q 004737          597 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHP  673 (732)
Q Consensus       597 ~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~--~~~~~~I~sl~fsp  673 (732)
                      .|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |+.|++||++..   ..+..+  ..+...|.+++|+|
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEECC
Confidence            999999999999999999999999999999999999999999 999999999876   444443  45567799999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++.+|++++.|+.|++||+.+++.+ .+.+|.+.|++++|+|++.+|+||+.||.|+|||
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999888 7789999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-38  Score=337.82  Aligned_cols=284  Identities=28%  Similarity=0.441  Sum_probs=246.7

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec------------------cCCCceEEEEEcCCCCeE
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------------------EHTQWITDVRFSPSLSRL  507 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~------------------~h~~~V~~l~fspdg~~L  507 (732)
                      ..+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+.                  .|...|++++|+|++++|
T Consensus        58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            346999999999999999999986 8999999999988877664                  466779999999999999


Q ss_pred             EEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeC
Q 004737          508 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP  587 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp  587 (732)
                      ++|+.||.|++||...+. .+..+.+|...|.+++|++++ ..+++++.++.|++||+.+..............++.+.+
T Consensus       137 ~s~~~dg~v~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  214 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP  214 (388)
T ss_dssp             EEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred             eecccccccccccccccc-ccccccccccccccccccccc-ccccccccceeeeeeeccccccccccccccccccccccC
Confidence            999999999999999865 577888999999999999986 455688889999999999999888888777777777766


Q ss_pred             -CCCEEEEEEcCCeEEEEECCCCeEEEEE-------cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC------
Q 004737          588 -RLGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------  652 (732)
Q Consensus       588 -~g~~ll~~s~dg~I~IwDl~t~~~i~~l-------~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~------  652 (732)
                       ++..|++++.|+.|++||++++.....+       .+|...|.+++|+|++.+|++++ |+.|++||+.+...      
T Consensus       215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  294 (388)
T d1erja_         215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT  294 (388)
T ss_dssp             TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred             CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence             6678889999999999999998776654       35788999999999999999999 99999999986532      


Q ss_pred             ---ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEE------eCCCCEEEEE
Q 004737          653 ---GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA------STVNGMVASA  722 (732)
Q Consensus       653 ---~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~------spdg~~LaSg  722 (732)
                         ..+......|...|.+++|+|++++|++++.|+.|++||+.+++.+ .+.+|.+.|.++++      +|++.+||||
T Consensus       295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~  374 (388)
T d1erja_         295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG  374 (388)
T ss_dssp             ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence               1344556678889999999999999999999999999999999988 78899999999975      5688999999


Q ss_pred             ECCCeEEEeC
Q 004737          723 SHDKCVKIWK  732 (732)
Q Consensus       723 s~DG~I~IWD  732 (732)
                      +.||+|+|||
T Consensus       375 s~Dg~I~iW~  384 (388)
T d1erja_         375 SGDCKARIWK  384 (388)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCEEEEEe
Confidence            9999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-36  Score=318.87  Aligned_cols=281  Identities=17%  Similarity=0.222  Sum_probs=239.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  527 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~  527 (732)
                      .+.+.+.+++++|+|+.||.+. ++.|.+||+++++....+.+|...|++++|+|++++||+|+.||+|+|||+.+....
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            4556778899999999999986 567999999999999999999999999999999999999999999999999987654


Q ss_pred             e-EEeecCCcceEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCE-EEEEEcCCeEEE
Q 004737          528 L-RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGR-ILAAAIENYISI  603 (732)
Q Consensus       528 ~-~~l~~h~~~V~sl~fspdg~~llaSgs-~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~-ll~~s~dg~I~I  603 (732)
                      . ..+.+|...|.+++|+|++..+++++. .+..+++|++++++....+..+ ..|.+++|+|++.+ +++++.|+.|++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            3 467889999999999999765554332 3567999999999888777643 56999999999885 677889999999


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-------ecCCCceEEEEEeCCC
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-------SCTGNKFHSCVFHPTF  675 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-------~~~~~~I~sl~fspdg  675 (732)
                      ||+++++....+..|...|++++|+|++++|++++ |+.|++||+.++   ..+..+       .+|...|.+++|+|++
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccCccccccccccccccccccccccc---cccccccccccccccccccccccccCCCC
Confidence            99999999999999999999999999999999998 999999999887   344433       2467889999999999


Q ss_pred             CEEEEEEcCCeEEEEECCCCeEE-EEccCCC-CeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          676 PSLLVIGCYETLELWNMTENKTL-TLSAHDK-LVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       676 ~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~-~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .+|++++.|+.|+|||+.+++++ .+..|.. ....+.+.+++.+|++++.||.|++||
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            99999999999999999999988 4544432 223334444566799999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.8e-36  Score=313.01  Aligned_cols=284  Identities=15%  Similarity=0.165  Sum_probs=233.8

Q ss_pred             EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          442 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       442 ~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ..+++.||.+.|+||+|+||+++||+|+.||+|+|||+++++.+..+. .|...|++++|+|++. +++++.|+.|++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            357899999999999999999999999999999999999999888874 6899999999999987 55667899999999


Q ss_pred             cCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcC
Q 004737          521 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE  598 (732)
Q Consensus       521 l~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~d  598 (732)
                      ......  .......+...+.+++|++++..++ ++. ++.+++|+...   .........+.+++|+|++..+++++.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AAC-YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EEE-SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             cCCcccccccccccccccccccccccccccccc-ccc-ccccccccccc---cccccccccccccccccccccccccccc
Confidence            875432  1223455778899999999976544 443 67899999542   2333445678899999999999999999


Q ss_pred             CeEEEEECCCCeEEE-EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737          599 NYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       599 g~I~IwDl~t~~~i~-~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                      +.|++||+++++... ....|...|++++|+|++.+|++++ |+.|++||+.+.........+..|...|.+++|+|++.
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  237 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999876543 3446899999999999999999998 99999999988754445556677889999999999999


Q ss_pred             EEEEEEcCCeEEEEECCCCeEE---EEccC-CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          677 SLLVIGCYETLELWNMTENKTL---TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       677 ~L~sgs~dg~I~IwDl~t~~~~---~~~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|++++.|+.|++||++++...   ....| ...|.++.| +++++|++++.||.|+|||
T Consensus       238 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            9999999999999999876432   33344 445666655 5678999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-35  Score=315.73  Aligned_cols=279  Identities=16%  Similarity=0.197  Sum_probs=231.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCe--EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  526 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~  526 (732)
                      +.++|+|++|+|||++||+|+.|+.|+|||+.+++  .+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+...
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34679999999999999999999999999998775  5677899999999999999999999999999999999987653


Q ss_pred             e-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe-----ccCCeeEEEEeCCCCEEEEEEcCCe
Q 004737          527 S-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----CQSGATQMRFQPRLGRILAAAIENY  600 (732)
Q Consensus       527 ~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~-----~~~~i~~v~~sp~g~~ll~~s~dg~  600 (732)
                      . ...+.+|...|.+++|+|++ ..|++++.|+.|++|++..........     +...+.+++|+|++.+|++++.|+.
T Consensus        86 ~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            2 34567889999999999996 456688899999999987655433222     3456899999999999999999999


Q ss_pred             EEEEECCC------------------CeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec
Q 004737          601 ISILDVET------------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC  661 (732)
Q Consensus       601 I~IwDl~t------------------~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~  661 (732)
                      |++||...                  +..+.....|...|.+++|+|++++|++++ |+.|++||+.++   ..+..+..
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~  241 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLAS  241 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEEC
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cceeeeec
Confidence            99999764                  245667778999999999999999999999 999999999887   67888888


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCeEE----------------------------------------E
Q 004737          662 TGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTL----------------------------------------T  699 (732)
Q Consensus       662 ~~~~I~sl~fspdg~~L~sgs~dg~I~Iw--Dl~t~~~~----------------------------------------~  699 (732)
                      |..+|.+++|+|++.+|+ ++.|+.+++|  +...+...                                        .
T Consensus       242 ~~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (371)
T d1k8kc_         242 ETLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL  320 (371)
T ss_dssp             SSCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred             ccccceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence            999999999999997655 5567765554  43332211                                        0


Q ss_pred             EccCCCCeeEEEEeCCC----CEEEEEECCCeEEEeC
Q 004737          700 LSAHDKLVSSLAASTVN----GMVASASHDKCVKIWK  732 (732)
Q Consensus       700 ~~~h~~~V~sla~spdg----~~LaSgs~DG~I~IWD  732 (732)
                      ...|.+.|+++++.+.+    ..|+|++.||.|+|||
T Consensus       321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            01388899999998755    3699999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=300.15  Aligned_cols=260  Identities=17%  Similarity=0.273  Sum_probs=228.4

Q ss_pred             CceeeeeecCCCceeEE--EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC--CeEEEEeccCCCceEEEEEc
Q 004737          426 DRVGRSAEVGKGFTFTE--FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~--v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~V~~l~fs  501 (732)
                      |..+++|++..+.....  .....+|.+.|++|+|+||+++|++|+.|+.|+|||+..  .+....+..|...|.+++|+
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~  150 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS  150 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc
Confidence            44577888766543332  334568999999999999999999999999999999874  45667788899999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCee
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT  581 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~  581 (732)
                      |++.++++++.|+.|++||+.++. ......+|...|.+++|++++. .+++++.|+.|++||+++++.+..+.+...+.
T Consensus       151 ~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~  228 (337)
T d1gxra_         151 PDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF  228 (337)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEE
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccccc-ccccccccccccccccccceeecccccccceE
Confidence            999999999999999999999865 4677888999999999999964 55688889999999999999999999999999


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEee
Q 004737          582 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      +++|+|++..+++++.|+.|++||++++... ....|...|++++|+|++++|++++ |+.|++||+.++   .++..+.
T Consensus       229 ~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~  304 (337)
T d1gxra_         229 SLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK  304 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred             EEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCC---CEEEEcc
Confidence            9999999999999999999999999988765 4556999999999999999999999 999999999987   5555544


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          661 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       661 ~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                       |...|.+++|+|++++|++++.|+.|+|||+
T Consensus       305 -~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 -ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence             6789999999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.2e-34  Score=299.93  Aligned_cols=259  Identities=17%  Similarity=0.231  Sum_probs=222.2

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEeccCCCceEEEEEcCCCC
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~V~~l~fspdg~  505 (732)
                      .+.+|++.++.   ....+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+.+.  ...+..|...|.+++|+|+++
T Consensus        39 ~v~i~~~~~~~---~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~  115 (311)
T d1nr0a1          39 SVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK  115 (311)
T ss_dssp             EEEEEETTCSS---CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             EEEEEECCCCc---eeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccc
Confidence            35677776653   3456789999999999999999999999999999999987654  356788999999999999999


Q ss_pred             eEEEEeC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeE
Q 004737          506 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQ  582 (732)
Q Consensus       506 ~Lasgs~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~  582 (732)
                      +|++++.  +..++||++++.. ....+.+|...|.+++|+|+++.++++|+.|+.|++||++++++...+.. ...+.+
T Consensus       116 ~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~  194 (311)
T d1nr0a1         116 RIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS  194 (311)
T ss_dssp             EEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccceeeecccccccccccccccccccccccccccccccc
Confidence            9999986  4569999999866 46778899999999999999988899999999999999999998888765 467999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc-------CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCce
Q 004737          583 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  654 (732)
Q Consensus       583 v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~-------~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~  654 (732)
                      +.|+|++.++++++.|+.|++||+.++..+..+.       +|...|++++|+|++++|++++ |+.|+|||++++   +
T Consensus       195 v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~  271 (311)
T d1nr0a1         195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---K  271 (311)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---E
T ss_pred             cccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---c
Confidence            9999999999999999999999999988777654       4788999999999999999999 999999999887   7


Q ss_pred             eEEEeecCCC-ceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          655 CIHELSCTGN-KFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       655 ~i~~~~~~~~-~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      ++.++..+.. ....+.+.+++.+|++++.||.|++||.+
T Consensus       272 ~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         272 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            7777765543 22334445556679999999999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-32  Score=284.96  Aligned_cols=282  Identities=18%  Similarity=0.301  Sum_probs=221.1

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      +...+++||.+.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++  +|++++.|+.+++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            456789999999865 36668999999999999999999999999999999999999999875  999999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEE--------------------------------------EEcCCCCcEEEEEeCCCcEEE
Q 004737          521 TENPDYSLRTFTGHSTTVMSL--------------------------------------DFHPSKEDLLCSCDNNSEIRY  562 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl--------------------------------------~fspdg~~llaSgs~Dg~I~i  562 (732)
                      ...... ......+...+...                                      .+.+. ..++++++.|+.|++
T Consensus        84 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~  161 (342)
T d2ovrb2          84 AETGEC-IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYDFMVKV  161 (342)
T ss_dssp             TTTTEE-EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETTSCEEE
T ss_pred             cccccc-eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc-cceeeeecCCCeEEE
Confidence            875432 11111111111111                                      11122 234557778899999


Q ss_pred             EECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCe
Q 004737          563 WSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL  641 (732)
Q Consensus       563 WDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~  641 (732)
                      ||+...+++..+..+ ......+.+++..+++++.||.|++||++.++++..+.+|...+.++++++  ++|++++ |+.
T Consensus       162 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~  238 (342)
T d2ovrb2         162 WDPETETCLHTLQGH-TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST  238 (342)
T ss_dssp             EEGGGTEEEEEECCC-SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC
T ss_pred             eecccceeeEEEcCc-ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE
Confidence            999888887776643 234455666788999999999999999999999999999999999888765  5899888 999


Q ss_pred             EEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EE-----ccCCCCeeEEEEeCC
Q 004737          642 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAASTV  715 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~-----~~h~~~V~sla~spd  715 (732)
                      |++||+........+.....|...+.++.++  +.++++++.|+.|++||+++++.+ .+     .+|...|++++|+|+
T Consensus       239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            9999998874322222233345566666664  568999999999999999999877 33     257888999999999


Q ss_pred             CCEEEEEECCCe----EEEeC
Q 004737          716 NGMVASASHDKC----VKIWK  732 (732)
Q Consensus       716 g~~LaSgs~DG~----I~IWD  732 (732)
                      +.+|++|+.||+    |++||
T Consensus       317 ~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEE
T ss_pred             CCEEEEEeCCCCCeeEEEEEe
Confidence            999999999985    89997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.1e-32  Score=289.53  Aligned_cols=263  Identities=23%  Similarity=0.384  Sum_probs=220.4

Q ss_pred             CceeeeeecCCCceeEEE---------------EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc
Q 004737          426 DRVGRSAEVGKGFTFTEF---------------QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE  490 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v---------------~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~  490 (732)
                      |..+++|+..++.....+               .....|...|++++|+|++++|++|+.||.|++||...++.+..+.+
T Consensus        82 d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~  161 (388)
T d1erja_          82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG  161 (388)
T ss_dssp             BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccc
Confidence            456777777666443322               23356888899999999999999999999999999999999999999


Q ss_pred             CCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 004737          491 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  570 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~  570 (732)
                      |...|.+++|++++..+++++.++.|++||+.+... ..... +.....++.|++....+|++++.|+.|++||+.++..
T Consensus       162 h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~  239 (388)
T d1erja_         162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  239 (388)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccccccccccccccccccccceeeeeeecccccc-ccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCcc
Confidence            999999999999999999999999999999997553 44444 4455677777776678888999999999999999887


Q ss_pred             eeEEe--------ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCe------------EEEEEcCCCCCEEEEEEeCC
Q 004737          571 AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQV------------CRLKLQGHKNQVHSVCWNTS  630 (732)
Q Consensus       571 i~~~~--------~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~------------~i~~l~~h~~~V~sla~spd  630 (732)
                      ...+.        +...|.+++|+|++..|++++.|+.|++||+++..            +......|...|.+++|+|+
T Consensus       240 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  319 (388)
T d1erja_         240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN  319 (388)
T ss_dssp             EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG
T ss_pred             ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCC
Confidence            76654        23568999999999999999999999999997643            33455568899999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEE------eCCCCEEEEEEcCCeEEEEECC
Q 004737          631 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF------HPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       631 g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~f------spdg~~L~sgs~dg~I~IwDl~  693 (732)
                      +++|++++ ||.|++||+.++   +++..+.+|...|.++++      +|++.+|++++.|+.|+||+++
T Consensus       320 ~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         320 DEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             GCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999 999999999987   788899999999999875      6788999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-32  Score=277.76  Aligned_cols=258  Identities=24%  Similarity=0.469  Sum_probs=234.0

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      |..+++|+..++.   .+..+.+|.+.|++++|++++.+++++..++.+.+|+....+....+..|...+.++.|++++.
T Consensus        38 Dg~i~iWd~~~~~---~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (317)
T d1vyhc1          38 DATIKVWDYETGD---FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD  114 (317)
T ss_dssp             SSCEEEEETTTCC---CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCC---EEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCc
Confidence            5677888887775   4567889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEE
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR  584 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~  584 (732)
                      ++++++.|+.+++||+.++. ....+.+|...+.+++|++++ .+|++++.|+.|++|++.+++....+.. ...+.++.
T Consensus       115 ~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~  192 (317)
T d1vyhc1         115 HIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS  192 (317)
T ss_dssp             EEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             eEEeeccCcceeEeecccce-eeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEE
Confidence            99999999999999999876 578889999999999999986 5677999999999999999988887764 34577777


Q ss_pred             EeCC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEE
Q 004737          585 FQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR  643 (732)
Q Consensus       585 ~sp~--------------------g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~  643 (732)
                      |+|+                    +..+++++.|+.|++||+++++++..+.+|...|.+++|+|++++|++++ ||.|+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  272 (317)
T d1vyhc1         193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR  272 (317)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEE
T ss_pred             EeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEE
Confidence            7764                    34688999999999999999999999999999999999999999999998 99999


Q ss_pred             EEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          644 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       644 IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      |||+.++   +++..+..|...|++++|+|++++|++++.|+.|+|||
T Consensus       273 iwd~~~~---~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         273 VWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999887   67788889999999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.1e-32  Score=281.34  Aligned_cols=280  Identities=16%  Similarity=0.250  Sum_probs=222.4

Q ss_pred             EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          442 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       442 ~v~~l~~H~~~V-~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      +..+|+||.+.| +|++|  ++++||+|+.|++|+|||+.+++.+.++.+|.+.|++++|+++ .+|++|+.|++|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            356799999886 66655  6889999999999999999999999999999999999999985 5899999999999999


Q ss_pred             cCCCCceeEEee-cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc----------------------
Q 004737          521 TENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----------------------  577 (732)
Q Consensus       521 l~s~~~~~~~l~-~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~----------------------  577 (732)
                      +........... .+...+..+.+.+++ .++++++.|+.|++||+.+..........                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  159 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred             cccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence            998654322222 223334556667764 66778999999999999876544322110                      


Q ss_pred             CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeE
Q 004737          578 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI  656 (732)
Q Consensus       578 ~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i  656 (732)
                      .......+.+++..++++..|+.|++||+++++.+..+.++...+.++.|++++.++++++ |+.|++||+.++   .++
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~  236 (355)
T d1nexb2         160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELM  236 (355)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CEE
T ss_pred             ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc---ccc
Confidence            0112234566778999999999999999999999999999999999999999999999999 999999999987   778


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEE-EEeCCCCEEEEEECCCeEEEeC
Q 004737          657 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL-AASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sl-a~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ..+..|...|.++.|++  ++|++++.|+.|++||+.+..... ..|...+.++ .+++++.+|++| .||.|+|||
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF-SYHHTNLSAITTFYVSDNILVSG-SENQFNIYN  309 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE-EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred             ccccccccccccccccc--ceeeeeecccccccccccccceec-ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence            88899999999999875  689999999999999999887553 3455555555 556777766665 589999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-32  Score=281.26  Aligned_cols=292  Identities=17%  Similarity=0.261  Sum_probs=232.3

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC--CCceEEEEEc
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFS  501 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~V~~l~fs  501 (732)
                      +.|..+++|+..++.   .+..+.+|.+.|++++|+++ .+|++|+.|++|++|+....+.......+  ...+..+.+.
T Consensus        30 s~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (355)
T d1nexb2          30 ADDKMIRVYDSINKK---FLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY  105 (355)
T ss_dssp             ETTTEEEEEETTTTE---EEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEE
T ss_pred             eCCCeEEEEECCCCc---EEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccc
Confidence            346788999988874   56778999999999999986 48999999999999999998887666543  3445667788


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCce----------------------eEEeecCCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  559 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~----------------------~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~  559 (732)
                      +++.++++++.|+.|++||+.+....                      ......|...+.....  + ..+++++..|+.
T Consensus       106 ~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~~~~~~~d~~  182 (355)
T d1nexb2         106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--H-GNIVVSGSYDNT  182 (355)
T ss_dssp             TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEE--E-TTEEEEEETTSC
T ss_pred             cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccc--c-cceeeeecccce
Confidence            89999999999999999999864321                      1122234444444443  3 356778899999


Q ss_pred             EEEEECCCCeeeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737          560 IRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs  638 (732)
                      |++||+.+++.+.... ....+.++.|++++..+++++.|+.|++||++++..+..+.+|...|.+++|+  +++|++++
T Consensus       183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~  260 (355)
T d1nexb2         183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA  260 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEEC
T ss_pred             eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeee
Confidence            9999999999887776 34568899999999999999999999999999999999999999999999986  46888888


Q ss_pred             -CCeEEEEECCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCCeEE--EEccCCCCeeEEEEeC
Q 004737          639 -DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST  714 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl-~fspdg~~L~sgs~dg~I~IwDl~t~~~~--~~~~h~~~V~sla~sp  714 (732)
                       ||.|++||+.+..   .  .+..|...+.++ .+++++.+ ++++.|+.|+|||+++++++  .+.+|...|++++|+|
T Consensus       261 ~dg~i~iwd~~~~~---~--~~~~~~~~~~~~~~~~~~~~~-l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         261 ADGSIRGWDANDYS---R--KFSYHHTNLSAITTFYVSDNI-LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             TTSEEEEEETTTCC---E--EEEEECTTCCCCCEEEECSSE-EEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET
T ss_pred             cccccccccccccc---e--ecccccCCceEEEEEcCCCCE-EEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC
Confidence             9999999998763   2  233344455554 55667765 55556899999999999887  4568999999999998


Q ss_pred             CCCEEEEEECCCeEEEe
Q 004737          715 VNGMVASASHDKCVKIW  731 (732)
Q Consensus       715 dg~~LaSgs~DG~I~IW  731 (732)
                      + .+|++++.||.++||
T Consensus       335 ~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         335 K-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             T-EEEEEEESSSCEEEE
T ss_pred             C-eEEEEEECCCcEEEE
Confidence            6 578889999987776

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-31  Score=265.98  Aligned_cols=274  Identities=20%  Similarity=0.385  Sum_probs=220.2

Q ss_pred             eEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEE
Q 004737          440 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  519 (732)
Q Consensus       440 ~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IW  519 (732)
                      +..+.....|...|+|++|  |+++||+|+.||+|+|||+.+++.+.++.+|.+.|++++|  ++++|++|+.|+.|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            3456777889999999765  7999999999999999999999999999999999999988  57899999999999999


Q ss_pred             ecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe----ccCCeeEEEEeCCCCEEEEE
Q 004737          520 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       520 Dl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~----~~~~i~~v~~sp~g~~ll~~  595 (732)
                      ++..+.. ......+.....  .+.+.. ..++++..++.+++||...........    +...+..+.+.  ...++++
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~  154 (293)
T d1p22a2          81 DVNTGEM-LNTLIHHCEAVL--HLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA  154 (293)
T ss_dssp             ESSSCCE-EEEECCCCSCEE--EEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEE
T ss_pred             ccccccc-cccccccccccc--cccccc-cceeecccccceeEeeccccccccccccccccccccccceec--ccccccc
Confidence            9998764 333333333332  333332 456688889999999998765433222    23345555554  4678899


Q ss_pred             EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCC
Q 004737          596 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      +.|+.|++||+++++.+..+.++...|..+.++  +.++++++ |+.|++||+++.   ..+.....+...+..  ++++
T Consensus       155 s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~  227 (293)
T d1p22a2         155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFD  227 (293)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECC
T ss_pred             cCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeecccceeeee--cccc
Confidence            999999999999999999999999999888876  46788888 999999999987   677777777777654  6677


Q ss_pred             CCEEEEEEcCCeEEEEECCC---------CeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          675 FPSLLVIGCYETLELWNMTE---------NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       675 g~~L~sgs~dg~I~IwDl~t---------~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.+|++++.|+.|++||+..         ...+ .+.+|.+.|++++|+  +.+|+||+.||+|+|||
T Consensus       228 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         228 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            88999999999999999743         2233 678999999999995  67899999999999998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-30  Score=280.55  Aligned_cols=268  Identities=16%  Similarity=0.186  Sum_probs=216.1

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE--EEeccCCCceEEEEEcC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSP  502 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~V~~l~fsp  502 (732)
                      .+..+++|+...+ .+..+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+.++...  ..+.+|...|++++|+|
T Consensus        27 ~~~~i~iw~~~~~-~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p  105 (371)
T d1k8kc_          27 NNHEVHIYEKSGN-KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP  105 (371)
T ss_dssp             SSSEEEEEEEETT-EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred             CCCEEEEEECCCC-CEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc
Confidence            3567888887665 34567889999999999999999999999999999999999877644  45578899999999999


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCce---eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe----------
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----------  569 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~---~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~----------  569 (732)
                      ++++|++++.|++|++|+++.....   ......|...|.+++|+|++ .+|++|+.|+.|++||+....          
T Consensus       106 ~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~  184 (371)
T d1k8kc_         106 NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPW  184 (371)
T ss_dssp             TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTT
T ss_pred             ccccceeecccCcceeeeeecccccccccccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccc
Confidence            9999999999999999998865532   23456788999999999996 466799999999999986432          


Q ss_pred             --------eeeEEe-ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Q 004737          570 --------CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE  640 (732)
Q Consensus       570 --------~i~~~~-~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg  640 (732)
                              .+.... +...+.+++|+|++.++++++.|+.|++||+.++..+..+..|..+|.+++|+|++.+|++|.|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~  264 (371)
T d1k8kc_         185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDC  264 (371)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTS
T ss_pred             cccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCC
Confidence                    222222 33458999999999999999999999999999999999999999999999999999999988888


Q ss_pred             eEEEEECCCCCCcee----------E--E--------------------------EeecCCCceEEEEEeCCC----CEE
Q 004737          641 LVRVWSIGSGSKGEC----------I--H--------------------------ELSCTGNKFHSCVFHPTF----PSL  678 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~----------i--~--------------------------~~~~~~~~I~sl~fspdg----~~L  678 (732)
                      .+++|+.........          .  .                          ....|.+.|+++++.+.+    ..|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~  344 (371)
T d1k8kc_         265 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF  344 (371)
T ss_dssp             SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred             ceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEE
Confidence            777765433211000          0  0                          001267789999998755    358


Q ss_pred             EEEEcCCeEEEEECCC
Q 004737          679 LVIGCYETLELWNMTE  694 (732)
Q Consensus       679 ~sgs~dg~I~IwDl~t  694 (732)
                      ++++.||.|+|||+++
T Consensus       345 ~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         345 CTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             EEEETTSEEEEEEHHH
T ss_pred             EEEcCCCeEEEEeCCc
Confidence            8999999999999854

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-30  Score=276.62  Aligned_cols=278  Identities=14%  Similarity=0.177  Sum_probs=221.0

Q ss_pred             CeEEEEEcCCCCEEEEEECCC-cEEEEEcCCC--eEEEEeccCC-CceEEEEEcC--CCCeEEEEeCCCeEEEEecCCCC
Q 004737          452 KVESCHFSPDGKLLATGGHDK-KAVLWCTESF--TVKSTLEEHT-QWITDVRFSP--SLSRLATSSADRTVRVWDTENPD  525 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg-~I~VWd~~t~--~~~~~l~~h~-~~V~~l~fsp--dg~~Lasgs~Dg~I~IWDl~s~~  525 (732)
                      .+++++|+|+++.|+.++.+. .|+.|+....  ..+..+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            578999999999999887554 3566665433  4456777774 6799999998  57899999999999999987543


Q ss_pred             ce-------eEEeecCCcceEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCE-EEEE
Q 004737          526 YS-------LRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGR-ILAA  595 (732)
Q Consensus       526 ~~-------~~~l~~h~~~V~sl~fspdg~~llaSg-s~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~-ll~~  595 (732)
                      ..       ...+..|.++|.+++|++++..+++++ +.++.+++|+..+++++..+.. ...+.+++|+|++.. ++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  178 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV  178 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEe
Confidence            21       123567889999999999987766544 3578899999999998888874 466999999999875 6678


Q ss_pred             EcCCeEEEEECCCCeEEEEEc---CCCCCEEEEEEeCC-CCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEE
Q 004737          596 AIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  670 (732)
Q Consensus       596 s~dg~I~IwDl~t~~~i~~l~---~h~~~V~sla~spd-g~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~  670 (732)
                      +.|+.|++||....+....+.   .|...|.+++|+|+ +.+|++++ |+.|++||++++   +++..+..|...+..+.
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~~~  255 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGGI  255 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSCE
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc---cccccccccccccccce
Confidence            889999999999887766654   46778999999997 68888888 999999999887   67888888877776665


Q ss_pred             Ee---CCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCC--CeeEEEEeCC-CCEEEEEECCCeEEEeC
Q 004737          671 FH---PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTV-NGMVASASHDKCVKIWK  732 (732)
Q Consensus       671 fs---pdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~--~V~sla~spd-g~~LaSgs~DG~I~IWD  732 (732)
                      |+   +++.+|++++.|+.|+|||+.+++++ .+..|..  .+..+++.+. +.+|++++.||.|+|||
T Consensus       256 ~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            55   78899999999999999999999987 4444443  3444444433 34899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=6.4e-31  Score=270.94  Aligned_cols=266  Identities=15%  Similarity=0.214  Sum_probs=219.5

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      +.++++.+|.++|+|++|+|    |++|+.||+|++||+.++     ..+|...|.+++|+++ ..+++++.|++|++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence            56889999999999999987    999999999999998764     3589999999999876 5679999999999999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC-
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-  599 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg-  599 (732)
                      +....        +...+.++.+++++ .+++++ .++.+.+|+..+++.+..+.....+  .++++++..+++++.++ 
T Consensus        74 ~~~~~--------~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~  141 (287)
T d1pgua2          74 ITKHE--------FGSQPKVASANNDG-FTAVLT-NDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGN  141 (287)
T ss_dssp             EEEEE--------CSSCEEEEEECSSS-EEEEEE-TTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTS
T ss_pred             ccccc--------cccceeeeeeccCC-ceEEEe-ecccceeeeccceeeeeecccccee--eeeeccCcceeeeccccc
Confidence            76422        23457788888875 444344 4677999999999999888865544  45667778888888875 


Q ss_pred             eEEEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeE-EEeecCCCceEEEEEeCC--
Q 004737          600 YISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPT--  674 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i-~~~~~~~~~I~sl~fspd--  674 (732)
                      .|++|++........+. .|...|++++|+|++.+|++++ |+.|++||+.+.   ... ..+..|...|.+++|+|.  
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~p~~~  218 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEK  218 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC-
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc---ccccccccccccccceeeeccccc
Confidence            79999998776666554 4778999999999999999999 999999999876   333 345678899999999875  


Q ss_pred             --------CCEEEEEEcCCeEEEEECCC-CeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          675 --------FPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       675 --------g~~L~sgs~dg~I~IwDl~t-~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                              +.++++++.|+.|+|||+.+ .+.+ .+.+|...|++++|++++ .|++++.||.|+|||
T Consensus       219 ~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             -----CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence                    46799999999999999976 4444 556899999999999976 689999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-30  Score=268.79  Aligned_cols=291  Identities=12%  Similarity=0.053  Sum_probs=218.4

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEE---EEeccCCCceEEEEEcCC-CCeEEEEeCCCeE
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPS-LSRLATSSADRTV  516 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~---~~l~~h~~~V~~l~fspd-g~~Lasgs~Dg~I  516 (732)
                      +.+....+|++.|++|+|+|++++||+|+.||+|+|||+++....   ....+|..+|++++|+|+ +.+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            346778899999999999999999999999999999998765432   233469999999999986 4589999999999


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-------cCCeeEEEEeCCC
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL  589 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-------~~~i~~v~~sp~g  589 (732)
                      ++|++............+........+.++ ...+++++.++.+++||++.+........       ......+.+.+.+
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeecccccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            999999876533333333333344444444 56777999999999999865443322221       1234567778888


Q ss_pred             CEEEEEEcCCeEEEEECCCCeE---EEEEcCCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEECCCCCCc------eeEE-
Q 004737          590 GRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKG------ECIH-  657 (732)
Q Consensus       590 ~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h~~~V~sla~sp-dg~~Lasgs-Dg~I~IWDl~t~~~~------~~i~-  657 (732)
                      ..+++++.|+.|++||+.....   ......+...+.++.+.+ ++..+++++ ||.+.+|++......      .... 
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            9999999999999999986532   223334555666666655 567888888 999999998754221      1111 


Q ss_pred             -----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          658 -----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       658 -----~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                           ....+...+++++|+|++.+|++|+.||.|++||+.+++.+....+...+..++|+|++++|++++.|+.+++|.
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence                 112355678999999999999999999999999999999885444445667788899999999999998877763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.8e-28  Score=253.92  Aligned_cols=257  Identities=23%  Similarity=0.350  Sum_probs=222.2

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCC----eEEEEeccCCCceEEEEEc
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFS  501 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~V~~l~fs  501 (732)
                      |..+++|+..++.   .+..+..|...|++++|+|+++++++|+.|+.|++|+....    .....+.+|...+....+.
T Consensus        76 Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (340)
T d1tbga_          76 DGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL  152 (340)
T ss_dssp             TTEEEEEETTTTE---EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE
T ss_pred             CCceeeeecccce---eEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc
Confidence            5677888888875   45678899999999999999999999999999999997643    4556777888776666555


Q ss_pred             CCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCe
Q 004737          502 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGA  580 (732)
Q Consensus       502 pdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i  580 (732)
                      . +..++....|.....|+..... .......+...+....+.+.+ .++++++.|+.|++||+++++++..+.. ...|
T Consensus       153 ~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i  229 (340)
T d1tbga_         153 D-DNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDI  229 (340)
T ss_dssp             E-TTEEEEEETTTEEEEEETTTTE-EEEEEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEEEEECCCSSCE
T ss_pred             c-cccccccccccccccccccccc-ccccccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEEEEEeCCCCCe
Confidence            4 4677888899999999988754 355666678889999998875 5667899999999999999999988874 4669


Q ss_pred             eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE
Q 004737          581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~  657 (732)
                      .+++|+|++.+|++++.|+.|++||++....+..+.  .+...|.+++|+|++++|++++ ||.|++||+.++   +++.
T Consensus       230 ~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~  306 (340)
T d1tbga_         230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAG  306 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEE
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEE
Confidence            999999999999999999999999999988777654  4667899999999999999999 999999999887   7888


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      .+.+|...|++++|+|++.+|++++.|+.|+|||
T Consensus       307 ~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         307 VLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.7e-29  Score=259.89  Aligned_cols=241  Identities=17%  Similarity=0.161  Sum_probs=197.9

Q ss_pred             CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          482 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       482 ~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      |+..+.+.+|.+.|++|+|+||+++|++|+.||+|++||++++.. .+.+ .+|...|++++|+|++ .++ +++.|+.+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-~~~~~~~h~~~v~~v~~~~~g-~~~-~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVFPDVHATMITGIKTTSKG-DLF-TVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECSSCSCSSCEEEEEECTTS-CEE-EEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCCCcEEEEEeeccc-eee-cccceeeE
Confidence            567889999999999999999999999999999999999998774 4444 5789999999999996 444 56679999


Q ss_pred             EEEECCCCeee----eEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEE
Q 004737          561 RYWSINNGSCA----GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  636 (732)
Q Consensus       561 ~iWDl~t~~~i----~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Las  636 (732)
                      ++|++......    ........+.+++|++++..++ ++.++.+.+|+....  ....  ....+.+++|+|++.+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~~~~i~~~~~~~~--~~~~--~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AACYKHIAIYSHGKL--TEVP--ISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EEESSEEEEEETTEE--EEEE--CSSCEEEEEECTTSCEEEE
T ss_pred             EEeccCCcccccccccccccccccccccccccccccc-ccccccccccccccc--cccc--ccccccccccccccccccc
Confidence            99998654321    2223456788999999977554 556679999996532  2222  3456889999999999999


Q ss_pred             Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE----EEccCCCCeeEEE
Q 004737          637 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLA  711 (732)
Q Consensus       637 gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~----~~~~h~~~V~sla  711 (732)
                      ++ |+.|++||+++...  .......|...|.+++|+|++.+|++++.++.|++||+.++...    .+..|...|++++
T Consensus       154 g~~dg~i~~~d~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~  231 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGASV--SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  231 (299)
T ss_dssp             EETTSEEEEEEEETTEE--EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98 99999999987621  12234467889999999999999999999999999999887765    4557899999999


Q ss_pred             EeCCCCEEEEEECCCeEEEeC
Q 004737          712 ASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       712 ~spdg~~LaSgs~DG~I~IWD  732 (732)
                      |+|++.+|++|+.||.|+|||
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccceEEEcCCCEEEEEE
Confidence            999999999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.6e-29  Score=262.88  Aligned_cols=246  Identities=16%  Similarity=0.257  Sum_probs=202.4

Q ss_pred             EEEEecCC-CCCeEEEEEcC--CCCEEEEEECCCcEEEEEcCCCe--------EEEEeccCCCceEEEEEcCCCCeEEEE
Q 004737          442 EFQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLATS  510 (732)
Q Consensus       442 ~v~~l~~H-~~~V~~lafSp--dg~~Lasgs~Dg~I~VWd~~t~~--------~~~~l~~h~~~V~~l~fspdg~~Lasg  510 (732)
                      .+..+.+| ...|++++|+|  ++.+||+|+.||+|+|||+..++        ....+..|.++|.+++|++++++|+++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            45566777 46899999998  67899999999999999986432        223456788999999999999999887


Q ss_pred             eC--CCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec----cCCeeEEE
Q 004737          511 SA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMR  584 (732)
Q Consensus       511 s~--Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~----~~~i~~v~  584 (732)
                      +.  ++.+++|+.+++. .+..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+..    ...+.+++
T Consensus       134 ~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             ECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eccccceEEEEeecccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            65  6789999999876 57888999999999999999888888999999999999988877665542    34589999


Q ss_pred             EeCC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEe---CCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737          585 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVS-DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       585 ~sp~-g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~s---pdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      |+|+ +.++++++.|+.|++||+++++++..+.+|...+.++.|+   +++++|++++ |+.|+|||++++   +++..+
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~  289 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKW  289 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEE
Confidence            9997 5778889999999999999999999999888777655555   6899999998 999999999987   677776


Q ss_pred             ecCCCc--eE--EEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          660 SCTGNK--FH--SCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       660 ~~~~~~--I~--sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ..+...  +.  ++.+.++ .+|++++.|+.|++||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         290 TLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            655543  33  3444443 46899999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.3e-28  Score=263.95  Aligned_cols=286  Identities=15%  Similarity=0.172  Sum_probs=214.8

Q ss_pred             EEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE------EEEeccCCCceEEEEE------cC-CCCeE
Q 004737          441 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTLEEHTQWITDVRF------SP-SLSRL  507 (732)
Q Consensus       441 ~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~------~~~l~~h~~~V~~l~f------sp-dg~~L  507 (732)
                      ......++|.+.|+++++++  ++|++++.|++|+|||..+.+.      ......|...+..+.+      .. ++.++
T Consensus         5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            45677899999999999874  6999999999999999765431      2223345544433332      11 23578


Q ss_pred             EEEeCCCeEEEEecCCCCceeEE---------eecCCcceEEEEEcCCC----CcEEEEEeCCCcEEEEECCCCe-----
Q 004737          508 ATSSADRTVRVWDTENPDYSLRT---------FTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGS-----  569 (732)
Q Consensus       508 asgs~Dg~I~IWDl~s~~~~~~~---------l~~h~~~V~sl~fspdg----~~llaSgs~Dg~I~iWDl~t~~-----  569 (732)
                      ++++.||.|++|++.........         ...+...+..++|.++.    ..++++++.||.|++||+....     
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            89999999999998654321111         11244567888888764    3567789999999999974221     


Q ss_pred             ----------eeeEEe----ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE------cCCCCCEEEEEEeC
Q 004737          570 ----------CAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNT  629 (732)
Q Consensus       570 ----------~i~~~~----~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l------~~h~~~V~sla~sp  629 (732)
                                ......    ....+.+++|+|++ +|++++.|+.|++||+++++++..+      .+|..+|++|+|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                      001111    12347899999985 8899999999999999999877654      46889999999999


Q ss_pred             CCCEEEEEe-CC---eEEEEECCCCCCceeEEEe-------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          630 SGEYLASVS-DE---LVRVWSIGSGSKGECIHEL-------------SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       630 dg~~Lasgs-Dg---~I~IWDl~t~~~~~~i~~~-------------~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      ++++|++++ |+   .|++||+.++   .++..+             .+|...|++++|+|++++|++++.|++|+|||+
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ccceeeeecCCCCcceeeecccccc---eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            999999998 65   5999999987   344433             368899999999999999999999999999999


Q ss_pred             CCCeEE-EEccCCC---------------------CeeEEEEeCCC----------CEEEEEECCCeEEEeC
Q 004737          693 TENKTL-TLSAHDK---------------------LVSSLAASTVN----------GMVASASHDKCVKIWK  732 (732)
Q Consensus       693 ~t~~~~-~~~~h~~---------------------~V~sla~spdg----------~~LaSgs~DG~I~IWD  732 (732)
                      ++++++ ++.+|..                     .+.++.|.+.+          ..|++++.|+.|++|+
T Consensus       319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            999988 6667753                     35566666543          3588999999999984

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=1.4e-27  Score=251.54  Aligned_cols=293  Identities=7%  Similarity=-0.039  Sum_probs=224.9

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCC--cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCC
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS  505 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg--~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~  505 (732)
                      .+.+|+...+...    .+ +|...|.+++|+|||++|++++.+.  .|++||.++++.. .+..|...|.+++|+||++
T Consensus        25 ~v~v~d~~~~~~~----~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~   98 (360)
T d1k32a3          25 QAFIQDVSGTYVL----KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGK   98 (360)
T ss_dssp             EEEEECTTSSBEE----EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSS
T ss_pred             eEEEEECCCCcEE----Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeeccccc
Confidence            5677877766432    22 7999999999999999998877553  7999999987655 5678999999999999999


Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCeeeeEEec
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKC  576 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs---------~Dg~I~iWDl~t~~~i~~~~~  576 (732)
                      +|++++.++.+++|++.+.. ....+..|...+.+++|+|++..++++..         .++.+++||+.+++.......
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~  177 (360)
T d1k32a3          99 FAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE  177 (360)
T ss_dssp             EEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS
T ss_pred             ccceeccccccccccccccc-eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccc
Confidence            99999999999999999876 46778889999999999999877765542         345699999999988877777


Q ss_pred             cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeE-------EEEEcCCCCCEEEEEEeCCCCEEEEEe-CC---eEEEE
Q 004737          577 QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVW  645 (732)
Q Consensus       577 ~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~-------i~~l~~h~~~V~sla~spdg~~Lasgs-Dg---~I~IW  645 (732)
                      ...+..++|+|++..|++++.++.+.+||......       ...+..|...+..++|++++..++++. +.   ..++|
T Consensus       178 ~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  257 (360)
T d1k32a3         178 NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS  257 (360)
T ss_dssp             SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred             ccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeeccccccee
Confidence            77788999999999999999999999999765432       333444556666677778777666544 21   23344


Q ss_pred             ECCCCCCceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEE
Q 004737          646 SIGSGSKGECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       646 Dl~t~~~~~~i~~~~~~~~~I~sl~fspdg---~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      .+....  .....+..+...+..+.+...+   .+++.++.++.|++||+.+++...+.   +.|.+++|+|||++|+++
T Consensus       258 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~v~~~~~SpDG~~l~~~  332 (360)
T d1k32a3         258 PINVDP--GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---NNLTDLRLSADRKTVMVR  332 (360)
T ss_dssp             ECSCCC--BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---EEEEEEEECTTSCEEEEE
T ss_pred             ecccCc--CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---CCcCEEEECCCCCEEEEE
Confidence            433221  1222333444555555555444   45677778889999999998876443   458999999999999999


Q ss_pred             ECCCeEEEeC
Q 004737          723 SHDKCVKIWK  732 (732)
Q Consensus       723 s~DG~I~IWD  732 (732)
                      +.||.|++||
T Consensus       333 ~~Dg~i~v~d  342 (360)
T d1k32a3         333 KDDGKIYTFP  342 (360)
T ss_dssp             ETTSCEEEEE
T ss_pred             ECCCeEEEEE
Confidence            9999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-25  Score=232.97  Aligned_cols=242  Identities=26%  Similarity=0.467  Sum_probs=194.6

Q ss_pred             EEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC
Q 004737          477 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  556 (732)
Q Consensus       477 Wd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~  556 (732)
                      |+..+.+....+++|.+.|.+ +++++|++||||+.||+|+|||+.+++ .+..+.+|...|.+++|+++   +|++++.
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-~~~~~~~h~~~V~~v~~~~~---~l~s~s~   75 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRDN---IIISGST   75 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-EEEECCCCSSCEEEEEEETT---EEEEEET
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-EEEEEeCCCCCEEEEEeCCC---cccccee
Confidence            566677788899999999865 356678999999999999999999876 58889999999999999864   7889999


Q ss_pred             CCcEEEEECCCCeeeeEEeccC---------------------------------------CeeEEEEeCCCCEEEEEEc
Q 004737          557 NSEIRYWSINNGSCAGVFKCQS---------------------------------------GATQMRFQPRLGRILAAAI  597 (732)
Q Consensus       557 Dg~I~iWDl~t~~~i~~~~~~~---------------------------------------~i~~v~~sp~g~~ll~~s~  597 (732)
                      |+.+++|+..............                                       ......+......+++++.
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY  155 (342)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEET
T ss_pred             cccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecC
Confidence            9999999987655433222110                                       0111233344567888999


Q ss_pred             CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 004737          598 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  676 (732)
Q Consensus       598 dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~  676 (732)
                      ++.|++||.+....+..+.+|...+..+.+  ++.+|++++ |+.|++||++..   .++..+..|...+.++.+++  .
T Consensus       156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~--~  228 (342)
T d2ovrb2         156 DFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKD--N  228 (342)
T ss_dssp             TSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEET--T
T ss_pred             CCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccc---eeeeEecccccceeEEecCC--C
Confidence            999999999999999999988877766554  678999998 999999999887   77888888888898887765  5


Q ss_pred             EEEEEEcCCeEEEEECCCCeEE-EEc---cCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          677 SLLVIGCYETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       677 ~L~sgs~dg~I~IwDl~t~~~~-~~~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +|++++.|+.|++||+...+.. .+.   .|...+.++.++  ++++++|+.||.|+|||
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd  286 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  286 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEE
Confidence            8999999999999999988766 343   355666666664  67999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.5e-26  Score=235.14  Aligned_cols=250  Identities=12%  Similarity=0.090  Sum_probs=195.6

Q ss_pred             eEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCce--eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          483 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       483 ~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~--~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      +.+....+|.+.|++|+|+|++++||+|+.||+|+|||++.....  +....+|..+|.+++|+|++..+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            456677899999999999999999999999999999999865532  334457999999999999888899999999999


Q ss_pred             EEEECCCCeeeeEEeccC--CeeEEEEeCCCCEEEEEEcCCeEEEEECCCC----eEEEEEcCC--CCCEEEEEEeCCCC
Q 004737          561 RYWSINNGSCAGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGH--KNQVHSVCWNTSGE  632 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~--~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h--~~~V~sla~spdg~  632 (732)
                      ++|++.............  ......+.++...+++++.++.+++||++..    ........+  ......+.+.+++.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            999998877666555332  2445566778889999999999999998653    222333322  23445667778888


Q ss_pred             EEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECCCCeEE------------
Q 004737          633 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMTENKTL------------  698 (732)
Q Consensus       633 ~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fs-pdg~~L~sgs~dg~I~IwDl~t~~~~------------  698 (732)
                      .+++++ |+.|++||+..................+.++.+. .++..+++++.|+.+.+|++......            
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            888888 9999999998876545555555555556665554 46688999999999999987643211            


Q ss_pred             ----EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          699 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       699 ----~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                          ....|...|++++|+|++++||||+.||.|+|||
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence                1135667899999999999999999999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.1e-24  Score=215.97  Aligned_cols=252  Identities=19%  Similarity=0.353  Sum_probs=205.4

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      +.|..+++|+..++.   .+.++.+|.+.|++++|  ++++|++|+.|+.|++|++..+........+.....  .+.+.
T Consensus        32 s~Dg~i~vWd~~~~~---~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~  104 (293)
T d1p22a2          32 LRDNTIKIWDKNTLE---CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFN  104 (293)
T ss_dssp             ESSSCEEEEESSSCC---EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECC
T ss_pred             eCCCeEEEEECCCCc---EEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--ccccc
Confidence            446778888887774   46678999999999987  678999999999999999999988877765554433  44556


Q ss_pred             CCeEEEEeCCCeEEEEecCCCCc--eeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCe
Q 004737          504 LSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGA  580 (732)
Q Consensus       504 g~~Lasgs~Dg~I~IWDl~s~~~--~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i  580 (732)
                      ...++++..++.+++||......  ....+..|...|.++.+.+   ..+++++.|+.|++||+++++++..+..+ ..+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v  181 (293)
T d1p22a2         105 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI  181 (293)
T ss_dssp             TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             ccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEEccccccc
Confidence            67899999999999999986553  2345677888999888875   35668888999999999999998888743 335


Q ss_pred             eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCC------Cc
Q 004737          581 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KG  653 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~------~~  653 (732)
                      ..+.++  +..+++++.|+.|++||+++...+..+.+|...+..  +.+++.+|++++ ||.|++||+....      ..
T Consensus       182 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~  257 (293)
T d1p22a2         182 ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT  257 (293)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred             ccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCc
Confidence            555554  578999999999999999999999999988888875  456788999998 9999999975422      23


Q ss_pred             eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          654 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       654 ~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwD  691 (732)
                      .++..+..|...|++++|+  +.+|++++.|++|+|||
T Consensus       258 ~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         258 LCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             eeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            5678888999999999995  56799999999999997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.93  E-value=4e-23  Score=211.63  Aligned_cols=259  Identities=12%  Similarity=0.116  Sum_probs=215.8

Q ss_pred             EEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEc
Q 004737          466 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  544 (732)
Q Consensus       466 asgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fs  544 (732)
                      ++++.|++|.|||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.++. .+..+..+. .+..+.|+
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-~~~~~~~~~-~~~~~~~~   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-VIATVPAGS-SPQGVAVS   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-EEEEEECSS-SEEEEEEC
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-eeeeeeccc-cccccccc
Confidence            45678899999999999999988754 4578999999999875 56678999999999876 466666665 46899999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEE
Q 004737          545 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVH  623 (732)
Q Consensus       545 pdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~  623 (732)
                      +++..+++++..++.+.+|+..+++....+.......++.|+|++..++++.. ++.+.+|+..+...+..+.. ...+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  161 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPK  161 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEE
T ss_pred             cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCce
Confidence            99998998898999999999999999999998888999999999998876665 67899999999998888874 45688


Q ss_pred             EEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEE
Q 004737          624 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTL  698 (732)
Q Consensus       624 sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d---g~I~IwDl~t~~~~  698 (732)
                      ++++++++.+++++.  ++.+.+|+....   ....... .......++|++++..+++++.+   +.|++||+.+++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~  237 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             EEEeeccccceeeecccccccccccccce---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence            999999999888887  457888887765   3444333 34567889999999988877654   47999999999988


Q ss_pred             EEccCCCCeeEEEEeCCCCEE-EEEECCCeEEEeC
Q 004737          699 TLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK  732 (732)
Q Consensus       699 ~~~~h~~~V~sla~spdg~~L-aSgs~DG~I~IWD  732 (732)
                      ....+...+.+++|+||+++| ++++.|+.|+|||
T Consensus       238 ~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         238 ARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            555566779999999999977 5677899999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.5e-25  Score=239.02  Aligned_cols=241  Identities=16%  Similarity=0.171  Sum_probs=178.3

Q ss_pred             EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCc-----eeEEeecCCcceEEEEE------cCCCCcEEEEE
Q 004737          486 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----SLRTFTGHSTTVMSLDF------HPSKEDLLCSC  554 (732)
Q Consensus       486 ~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~-----~~~~l~~h~~~V~sl~f------spdg~~llaSg  554 (732)
                      ...++|.+.|.++++++  ++|+|++.|++|+|||..+...     .......|...+..+.+      ......+++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            45579999999999864  6999999999999999875432     12223334443333222      22233577899


Q ss_pred             eCCCcEEEEECCCCeeeeEEe-----------ccCCeeEEEEeCC-----CCEEEEEEcCCeEEEEECCCC---------
Q 004737          555 DNNSEIRYWSINNGSCAGVFK-----------CQSGATQMRFQPR-----LGRILAAAIENYISILDVETQ---------  609 (732)
Q Consensus       555 s~Dg~I~iWDl~t~~~i~~~~-----------~~~~i~~v~~sp~-----g~~ll~~s~dg~I~IwDl~t~---------  609 (732)
                      +.||.|++|++........+.           ....+..++|.++     +.++++++.||.|++||+...         
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            999999999976433221111           1234667777765     356888999999999997421         


Q ss_pred             ------eE---EEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEE------EeecCCCceEEEEEeC
Q 004737          610 ------VC---RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH------ELSCTGNKFHSCVFHP  673 (732)
Q Consensus       610 ------~~---i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~------~~~~~~~~I~sl~fsp  673 (732)
                            ..   ......+...+.+++|+|++ +|++|+ |++|+|||+.++   +++.      .+..|...|.+++|+|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~---~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc---ccccccccccccccccceEEEccccc
Confidence                  01   11122355678999999998 788888 999999999987   3333      3456788999999999


Q ss_pred             CCCEEEEEEcCC---eEEEEECCCCeEE-EE-------------ccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          674 TFPSLLVIGCYE---TLELWNMTENKTL-TL-------------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       674 dg~~L~sgs~dg---~I~IwDl~t~~~~-~~-------------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ++++|++++.|+   .|++||+.+++.+ .+             .+|.+.|++++|+|++++|+||+.|++|+|||
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            999999999887   4999999998766 22             37999999999999999999999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5e-24  Score=218.75  Aligned_cols=246  Identities=11%  Similarity=0.123  Sum_probs=194.0

Q ss_pred             CCCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC
Q 004737          423 DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP  502 (732)
Q Consensus       423 ~~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp  502 (732)
                      .+.|..+++|+..++        ..+|...|.+++|++++ .+++++.|++|++|++...       .+...+.++.+.+
T Consensus        27 gs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~   90 (287)
T d1pgua2          27 GSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANN   90 (287)
T ss_dssp             EETTSCEEETTTTEE--------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECS
T ss_pred             EeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeecc
Confidence            445677788876653        35899999999999765 6789999999999997542       1345678899998


Q ss_pred             CCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--ccCCe
Q 004737          503 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGA  580 (732)
Q Consensus       503 dg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--~~~~i  580 (732)
                      ++..++++ .++.+.+|+..++.. +..+.. ...+  .++++++..+++++..++.|++|++........+.  +...+
T Consensus        91 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v  165 (287)
T d1pgua2          91 DGFTAVLT-NDDDLLILQSFTGDI-IKSVRL-NSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKP  165 (287)
T ss_dssp             SSEEEEEE-TTSEEEEEETTTCCE-EEEEEC-SSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCE
T ss_pred             CCceEEEe-ecccceeeeccceee-eeeccc-ccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCce
Confidence            87766665 566788999887663 444443 3344  45566666666666656789999998766555544  34569


Q ss_pred             eEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE-EEcCCCCCEEEEEEeCC----------CCEEEEEe-CCeEEEEECC
Q 004737          581 TQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTS----------GEYLASVS-DELVRVWSIG  648 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~-~l~~h~~~V~sla~spd----------g~~Lasgs-Dg~I~IWDl~  648 (732)
                      .+++|+|++.+|++++.||.|++||+.++.... .+.+|...|.+++|+|.          +.+|++++ |+.|+|||++
T Consensus       166 ~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~  245 (287)
T d1pgua2         166 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK  245 (287)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred             eEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence            999999999999999999999999999987665 46679999999999874          46899998 9999999997


Q ss_pred             CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          649 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       649 t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      +..  ..+..+.+|...|.+++|+|++ .|++++.|+.|++|++
T Consensus       246 ~~~--~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         246 RPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CTT--CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCC--eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            643  5677788899999999999987 5899999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.7e-23  Score=226.78  Aligned_cols=304  Identities=9%  Similarity=0.028  Sum_probs=220.3

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEE--Ee---ccCCCceEEE
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TL---EEHTQWITDV  498 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l---~~h~~~V~~l  498 (732)
                      ..+..+++||..++..   +.++..|. .+..++|||||++|++++.|++|++||+.+++...  .+   .+|...+.++
T Consensus        39 ~~dg~v~vwD~~t~~~---~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~  114 (426)
T d1hzua2          39 RDAGQIALVDGDSKKI---VKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK  114 (426)
T ss_dssp             TTTTEEEEEETTTCSE---EEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred             cCCCEEEEEECCCCcE---EEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence            3578899999998864   45566664 59999999999999999999999999999886443  22   3566677888


Q ss_pred             EEcCCCCeEEEE-eCCCeEEEEecCCCCceeEEeecCCcc-----------eEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          499 RFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-----------VMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       499 ~fspdg~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~h~~~-----------V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                      +|+|||++|+++ ..++.+++||..+.. ....+..|...           ...+.+++++..++++....+.+.+++..
T Consensus       115 ~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~  193 (426)
T d1hzua2         115 FKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK  193 (426)
T ss_dssp             STTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred             eecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence            899999987554 578999999999876 35555544433           44555566655555555555566666665


Q ss_pred             CCee--eeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCC--CCCEEEEEEeCCCC--EEEEEe-
Q 004737          567 NGSC--AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGE--YLASVS-  638 (732)
Q Consensus       567 t~~~--i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h--~~~V~sla~spdg~--~Lasgs-  638 (732)
                      ....  +..+.....+..+.|+|++++++++.. +..+.++|..+++.+..+...  ......+.+...+.  .++... 
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (426)
T d1hzua2         194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL  273 (426)
T ss_dssp             SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred             cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence            5442  233445566889999999999888876 467999999999888776532  22233444443333  222222 


Q ss_pred             -CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEE-------EEcCCeEEEEECCCCeEE-E------
Q 004737          639 -DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV-------IGCYETLELWNMTENKTL-T------  699 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~s-------gs~dg~I~IwDl~t~~~~-~------  699 (732)
                       |+.+.+|+......    .+....+.+|...+..++|+|++++|++       +..+++|+|||+.+++.. +      
T Consensus       274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~  353 (426)
T d1hzua2         274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE  353 (426)
T ss_dssp             TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred             CCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccch
Confidence             77899998765422    3577888899999999999999999986       344679999999987644 2      


Q ss_pred             ---EccCCCCeeEEEEeCCCCEEEEE-----ECCCeEEEeC
Q 004737          700 ---LSAHDKLVSSLAASTVNGMVASA-----SHDKCVKIWK  732 (732)
Q Consensus       700 ---~~~h~~~V~sla~spdg~~LaSg-----s~DG~I~IWD  732 (732)
                         +..|...|.+++|||||++|+.+     +.||.|+|||
T Consensus       354 ~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         354 WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             hcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence               23566779999999999977443     3588999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=9.8e-24  Score=232.87  Aligned_cols=301  Identities=10%  Similarity=-0.011  Sum_probs=212.7

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEe---ccCCCceEEE
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTL---EEHTQWITDV  498 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l---~~h~~~V~~l  498 (732)
                      ..+..+.+||..++...   ..+..|. .+..++|||||++|++++.|+.|++||+.+++.  +..+   .+|.+.+.++
T Consensus        39 ~d~g~v~v~D~~t~~v~---~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~  114 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIK---TVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK  114 (432)
T ss_dssp             TTTTEEEEEETTTCCEE---EEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred             cCCCEEEEEECCCCcEE---EEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence            34667899999888654   4455564 599999999999999999999999999987653  3333   3566667777


Q ss_pred             EEcCCCCeE-EEEeCCCeEEEEecCCCCceeEEeec-----------CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          499 RFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       499 ~fspdg~~L-asgs~Dg~I~IWDl~s~~~~~~~l~~-----------h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                      .|+|||++| ++++.+++|+|||..+++. +..+..           +......+.++|++..++++...++.|.+||..
T Consensus       115 ~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~  193 (432)
T d1qksa2         115 MEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT  193 (432)
T ss_dssp             STTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence            889999986 6788899999999998764 444433           345567889999998888899999999999998


Q ss_pred             CCeeee--EEeccCCeeEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEEcC-----CCCCEEEEEEeCCCCEEEEEe
Q 004737          567 NGSCAG--VFKCQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       567 t~~~i~--~~~~~~~i~~v~~sp~g~~ll~~s~d-g~I~IwDl~t~~~i~~l~~-----h~~~V~sla~spdg~~Lasgs  638 (732)
                      +.+...  .+.....+..++|+|+++++++++.+ +.|.++|..+.+.+..+..     |........+...+.+.++..
T Consensus       194 ~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~  273 (432)
T d1qksa2         194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSH  273 (432)
T ss_dssp             CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEB
T ss_pred             CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccc
Confidence            877554  44455668899999999998888875 6899999999888776542     333444555555556666655


Q ss_pred             --CCeEEEEECCCCCC----ceeEEEeecCCCceE-------------------------EEEEeCCCCEEEEEEcCCeE
Q 004737          639 --DELVRVWSIGSGSK----GECIHELSCTGNKFH-------------------------SCVFHPTFPSLLVIGCYETL  687 (732)
Q Consensus       639 --Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~-------------------------sl~fspdg~~L~sgs~dg~I  687 (732)
                        ++.|.+|+......    ......+..+.....                         .+++ ||++.+++++.|+.+
T Consensus       274 lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~  352 (432)
T d1qksa2         274 MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEF  352 (432)
T ss_dssp             SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCE
T ss_pred             cCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCce
Confidence              77899998765321    111222221111111                         1222 455555555556666


Q ss_pred             EEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE-----CCCeEEEeC
Q 004737          688 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK  732 (732)
Q Consensus       688 ~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs-----~DG~I~IWD  732 (732)
                      ++||+.++.  .+..|...|.+++|+|||++|+.+.     .||.|+|||
T Consensus       353 k~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         353 KTLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             EEECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             Eeccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            666553332  2235777899999999999886554     478899997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=3.2e-21  Score=197.25  Aligned_cols=262  Identities=15%  Similarity=0.177  Sum_probs=213.5

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCC
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  503 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspd  503 (732)
                      .+..+.+||..++.....   ++.. ..+..++|+|||++|+ +++.++.|++||+.+++.+..+..|.. +..++|+++
T Consensus        10 ~~~~v~v~D~~t~~~~~~---i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~   84 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTAT---IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPD   84 (301)
T ss_dssp             TTTEEEEEETTTTEEEEE---EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTT
T ss_pred             CCCEEEEEECCCCeEEEE---EECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccc
Confidence            456789999999865443   4333 4578999999999875 566789999999999999999987764 689999999


Q ss_pred             CCeEEE-EeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeE
Q 004737          504 LSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ  582 (732)
Q Consensus       504 g~~Las-gs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~  582 (732)
                      +.++++ +..++.+.+|+..++. ....+. +...+.++.|+|++..+++++..++.+.+|+..+...+..+.....+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNT-VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG  162 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             cccccccccccceeeecccccce-eeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceE
Confidence            986654 5567899999998765 344444 4456789999999999988998999999999999999999998888999


Q ss_pred             EEEeCCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEE
Q 004737          583 MRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH  657 (732)
Q Consensus       583 v~~sp~g~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~  657 (732)
                      +.+++++..++++..+ +.+.+|+....+....+. ....+..++|++++..++.+.    ++.|++||+.++   +.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---~~~~  238 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITA  238 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEE
T ss_pred             EEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCC---eEEE
Confidence            9999999999888876 678888888887777666 445678899999999877654    358999999887   5666


Q ss_pred             EeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEECCCCeEE
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMTENKTL  698 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~s-gs~dg~I~IwDl~t~~~~  698 (732)
                      .+.. ...+..++|+|||++|++ ++.++.|++||+++++++
T Consensus       239 ~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         239 RIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            6554 456899999999998764 556789999999999887

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.90  E-value=1.8e-23  Score=219.67  Aligned_cols=272  Identities=11%  Similarity=0.017  Sum_probs=211.4

Q ss_pred             EEEEEcC-CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC--eEEEEecCCCCceeEE
Q 004737          454 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT  530 (732)
Q Consensus       454 ~~lafSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg--~I~IWDl~s~~~~~~~  530 (732)
                      ..-.||| ||+++|+++ +|.|+|||++++..+..  .|...|.+++|+|||++|++++.+.  .|++||++++.  ...
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~   80 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEK   80 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEE
Confidence            3467999 999999987 47999999998877653  6999999999999999998877653  79999998765  567


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CCeeEEEEeCCCCEEEEEEc----------CC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAI----------EN  599 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~i~~v~~sp~g~~ll~~s~----------dg  599 (732)
                      +..|...|.+++|+|++. +|++++.++.+++|++.++++...+..+ ..+.+++|+|++.+|+++..          ++
T Consensus        81 ~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             CCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             eeCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            788999999999999975 5558888999999999999988877754 45788999999999987653          34


Q ss_pred             eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCC
Q 004737          600 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPT  674 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspd  674 (732)
                      .+++||+.+++.... ..+...+.+++|+|+|++|++++ ++.+++||......    ......+..+...+..+.|+++
T Consensus       160 ~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  238 (360)
T d1k32a3         160 AIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR  238 (360)
T ss_dssp             EEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred             ceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence            689999998876544 44778899999999999999988 88999999765421    1223334445555556677777


Q ss_pred             CCEEEEEEcCC-----eEEEEECCCCeEEEEccCCCCeeEEEEeCCCC---EEEEEECCCeEEEeC
Q 004737          675 FPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK  732 (732)
Q Consensus       675 g~~L~sgs~dg-----~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~---~LaSgs~DG~I~IWD  732 (732)
                      +..++.+..+.     .+..+++..+....+..+.+.+..+.+...+.   ++++++.++.|++||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d  304 (360)
T d1k32a3         239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD  304 (360)
T ss_dssp             GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEE
T ss_pred             cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEE
Confidence            76665554332     35556666777666667777777777665543   678888999999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=5.5e-22  Score=205.80  Aligned_cols=262  Identities=11%  Similarity=0.070  Sum_probs=204.1

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEecc--CCCceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeecCC----
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHS----  535 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~----  535 (732)
                      +||++++.|++|+|||+.+++.+..+..  +...+.+++|+|||++++ +++.++.|.+||+.+++. +..+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence            5899999999999999999999998864  345678999999999874 567899999999998774 45444432    


Q ss_pred             -cceEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEE
Q 004737          536 -TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI  603 (732)
Q Consensus       536 -~~V~sl~fspdg~~llaSgs-----------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~I  603 (732)
                       ..+..++|+|++..++++..           .+..+.+||..+++....+.....+..++|++++.++++++  +.+.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence             34568999999877765543           46789999999999999999888899999999999998875  55788


Q ss_pred             EECCCCeEEEEEcCCCCCEEEEEEeCCCC------------------------EEEEEe-CCeEEEEECCCCCCceeEEE
Q 004737          604 LDVETQVCRLKLQGHKNQVHSVCWNTSGE------------------------YLASVS-DELVRVWSIGSGSKGECIHE  658 (732)
Q Consensus       604 wDl~t~~~i~~l~~h~~~V~sla~spdg~------------------------~Lasgs-Dg~I~IWDl~t~~~~~~i~~  658 (732)
                      ||..+++....+..+... ....+.+++.                        .+.... ++.+.+||..++.  .....
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  235 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred             eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEEEE
Confidence            999999888877543221 1111111111                        111111 4468899988763  23344


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          659 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       659 ~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +..+...+..+.+++++.++++.  ++.|++||+.+++.+....+...+.+++|+|||++|++++.|+.|+|||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            55677788899999999987765  4789999999999996667788899999999999999999999999997

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=3.6e-22  Score=208.05  Aligned_cols=269  Identities=10%  Similarity=0.025  Sum_probs=200.9

Q ss_pred             EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeec
Q 004737          456 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       456 lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      ++|+++++||++++.|++|.|||+++++.+.++. .|...+.+++|+|||++++ +++.++.|++||+.+++. +..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence            5789999999999999999999999999999886 4566789999999999875 555789999999998764 333332


Q ss_pred             C------CcceEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEE
Q 004737          534 H------STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRIL  593 (732)
Q Consensus       534 h------~~~V~sl~fspdg~~llaSgs-----------~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll  593 (732)
                      .      ...+..++|+|||+.++++..           .+..+.+||..+++....+.   ....+..+.+++++..++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            1      234678999999987765542           47789999998876554332   334566667777655443


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCE--------------------------EEEEe-CCeEEEEE
Q 004737          594 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY--------------------------LASVS-DELVRVWS  646 (732)
Q Consensus       594 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~--------------------------Lasgs-Dg~I~IWD  646 (732)
                      .   ++.+.+||+.+++.+..+..+. .+..+.++|++..                          +.++. +..+.+||
T Consensus       161 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         161 A---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             E---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             e---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence            3   4679999999998888776432 2233334443332                          22223 45678888


Q ss_pred             CCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEECCC
Q 004737          647 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  726 (732)
Q Consensus       647 l~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs~DG  726 (732)
                      +.++.  ........+...+..+.+++++.++++... +.|++||..+++.+....+...+.+++|+|||++|++++.||
T Consensus       237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~  313 (346)
T d1jmxb_         237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN  313 (346)
T ss_dssp             TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred             CCCCc--eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            87763  233445567778899999999987776654 579999999999986666777899999999999999999999


Q ss_pred             eEEEeC
Q 004737          727 CVKIWK  732 (732)
Q Consensus       727 ~I~IWD  732 (732)
                      .|+|||
T Consensus       314 ~v~v~D  319 (346)
T d1jmxb_         314 DLAVFN  319 (346)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=1.4e-20  Score=205.87  Aligned_cols=265  Identities=9%  Similarity=-0.008  Sum_probs=196.2

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee----EEeecCCcceE
Q 004737          464 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----RTFTGHSTTVM  539 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~----~~l~~h~~~V~  539 (732)
                      ++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||++|++++.|++|++||+.+++...    ....+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56778889999999999999999998775 58999999999999999999999999999876422    22345667778


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc------------CCeeEEEEeCCCCEEEEEEcC-CeEEEEEC
Q 004737          540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAIE-NYISILDV  606 (732)
Q Consensus       540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~------------~~i~~v~~sp~g~~ll~~s~d-g~I~IwDl  606 (732)
                      +++|+|||+.+++++..++.+++||..++.++..+..+            .....+.+++++..++....+ +.+.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            88899999988888889999999999999887766532            224556677777776666554 56666666


Q ss_pred             CCCeE-EEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecC--CCceEEEEEeCCCC-EEEE
Q 004737          607 ETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFP-SLLV  680 (732)
Q Consensus       607 ~t~~~-i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~--~~~I~sl~fspdg~-~L~s  680 (732)
                      ..... ......+...+..+.|+|++++++++.  +..+.+|+..+.   ..+......  ........+...+. .++.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEE
Confidence            65432 223334777899999999999998887  668999999887   444443322  22223333333322 2222


Q ss_pred             E--EcCCeEEEEECCCC-------eEE-EEccCCCCeeEEEEeCCCCEEEE-------EECCCeEEEeC
Q 004737          681 I--GCYETLELWNMTEN-------KTL-TLSAHDKLVSSLAASTVNGMVAS-------ASHDKCVKIWK  732 (732)
Q Consensus       681 g--s~dg~I~IwDl~t~-------~~~-~~~~h~~~V~sla~spdg~~LaS-------gs~DG~I~IWD  732 (732)
                      .  ..++.+.+|+....       +.. .+.+|...+..++|+|++++|++       ++.|++|+|||
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence            2  34667888876543       344 77899999999999999999994       55688999997

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=4.9e-20  Score=190.85  Aligned_cols=263  Identities=13%  Similarity=0.080  Sum_probs=196.0

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEeccCC-----CceEEE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHT-----QWITDV  498 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~-----~~V~~l  498 (732)
                      .|..+.+||..++.....+ .+..+...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+.     ..+..+
T Consensus         9 ~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v   87 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred             CCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeE
Confidence            4567788888887544432 2334556788999999999874 56688999999999999998886553     345678


Q ss_pred             EEcCCCCeEEEEe------------CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          499 RFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       499 ~fspdg~~Lasgs------------~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                      +|+|++++++++.            .+..+.+||..+.. ....+. +...+.+++|+|++..+++ ++  +.+.+||..
T Consensus        88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~-~~--~~~~~~d~~  162 (337)
T d1pbyb_          88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE-APRQITMLAWARDGSKLYG-LG--RDLHVMDPE  162 (337)
T ss_dssp             EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE-CCSSCCCEEECTTSSCEEE-ES--SSEEEEETT
T ss_pred             EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEecc-ccCCceEEEEcCCCCEEEE-Ec--CCcceeeee
Confidence            9999999998876            46788999999865 344444 4456889999999877764 43  458899999


Q ss_pred             CCeeeeEEeccCCeeEEEEeCCCCE------------------------EEEEEcCCeEEEEECCCCeEEE-EEcCCCCC
Q 004737          567 NGSCAGVFKCQSGATQMRFQPRLGR------------------------ILAAAIENYISILDVETQVCRL-KLQGHKNQ  621 (732)
Q Consensus       567 t~~~i~~~~~~~~i~~v~~sp~g~~------------------------ll~~s~dg~I~IwDl~t~~~i~-~l~~h~~~  621 (732)
                      +++....+..........+.+++..                        +.....++.+.+||..++.... .+..+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (337)
T d1pbyb_         163 AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF  242 (337)
T ss_dssp             TTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             cCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcc
Confidence            9988887765433222222222111                        1111223468999999886554 34557778


Q ss_pred             EEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE
Q 004737          622 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  698 (732)
Q Consensus       622 V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~  698 (732)
                      +.++++++++.+++++ ++.|++||+.++   +.+..+. +...+.+++|+|||++|++++.++.|++||..+++.+
T Consensus       243 ~~~~~~~~~~~~~~~~-~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             eEEEEecccceEEEEc-cccEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            8999999999988754 688999999987   6666654 4567889999999999999999999999999999877

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.3e-20  Score=202.61  Aligned_cols=191  Identities=10%  Similarity=-0.012  Sum_probs=154.6

Q ss_pred             cCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee----EEeecC
Q 004737          459 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----RTFTGH  534 (732)
Q Consensus       459 Spdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~----~~l~~h  534 (732)
                      +++.-++++.+.||+|.|||..+++++..+..|. .+..++|+|||++|++++.|++|++||+.+.+...    ....+|
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            3343346888999999999999999999998774 69999999999999999999999999998765322    223456


Q ss_pred             CcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec------------cCCeeEEEEeCCCCEEEEEEc-CCeE
Q 004737          535 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGRILAAAI-ENYI  601 (732)
Q Consensus       535 ~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~------------~~~i~~v~~sp~g~~ll~~s~-dg~I  601 (732)
                      .+.+.+..|+|||+.++++++.++.|++||..+++++..+..            ......+.+++++..++++.. ++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            667777788999999989999999999999999998877653            233567889999988766554 6899


Q ss_pred             EEEECCCCeEEEEEc-CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC
Q 004737          602 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG  650 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~-~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~  650 (732)
                      .+||..+.+...... .+...+.+++|+|+|+++++++  ++.+.+||..+.
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            999998876443222 2556789999999999988888  668999999876

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=2.4e-18  Score=182.45  Aligned_cols=280  Identities=11%  Similarity=0.028  Sum_probs=204.3

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe---------
Q 004737          446 IPASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---------  511 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs---------  511 (732)
                      ...|.+++.+++++|||+.+++..     .++.|.|||..+++.+.++..+...  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            346888999999999999987642     3467999999999999998766543  799999999999875         


Q ss_pred             -CCCeEEEEecCCCCceeEEeecCCcce-------EEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEeccCCeeE
Q 004737          512 -ADRTVRVWDTENPDYSLRTFTGHSTTV-------MSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQ  582 (732)
Q Consensus       512 -~Dg~I~IWDl~s~~~~~~~l~~h~~~V-------~sl~fspdg~~llaSg-s~Dg~I~iWDl~t~~~i~~~~~~~~i~~  582 (732)
                       .++.|.|||..+++. +..+..+....       ..+.|+++++.+++.. ..++.+.+|+....+.....   ....+
T Consensus        94 ~~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  169 (373)
T d2madh_          94 KRTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL---SSPTC  169 (373)
T ss_pred             ccceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe---cccee
Confidence             357899999998764 44444444333       4577888877665443 45678889998877655444   34567


Q ss_pred             EEEeCCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCC------CCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCcee
Q 004737          583 MRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC  655 (732)
Q Consensus       583 v~~sp~g~~l-l~~s~dg~I~IwDl~t~~~i~~l~~h------~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~  655 (732)
                      +.+++++..+ ++.+.|+.+.+||...+........+      ......+.+.+++.+++...++.+.+|+...... ..
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  248 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TN  248 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE-EE
Confidence            8899998765 56777999999999988776654432      2234456677777777666689999999887532 11


Q ss_pred             EEEeec----------CCCceEEEEEeCCCCEEE----------EEEcCCeEEEEECCCCeEEEEccCCCCeeEEEEeCC
Q 004737          656 IHELSC----------TGNKFHSCVFHPTFPSLL----------VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV  715 (732)
Q Consensus       656 i~~~~~----------~~~~I~sl~fspdg~~L~----------sgs~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spd  715 (732)
                      +.....          .......+++++++..++          ....++.|.+||..+++.+....+...+.+++|+||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spD  328 (373)
T d2madh_         249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQD  328 (373)
T ss_pred             EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCC
Confidence            111111          122334556666666544          344566899999999999877778888999999999


Q ss_pred             CC--EEEEEECCCeEEEeC
Q 004737          716 NG--MVASASHDKCVKIWK  732 (732)
Q Consensus       716 g~--~LaSgs~DG~I~IWD  732 (732)
                      |+  ++++++.|+.|+|||
T Consensus       329 G~~~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEE
Confidence            98  456788999999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.7e-18  Score=176.96  Aligned_cols=274  Identities=12%  Similarity=0.108  Sum_probs=196.8

Q ss_pred             CCCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCeEEEEe---ccCCCceEEEE
Q 004737          424 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTL---EEHTQWITDVR  499 (732)
Q Consensus       424 ~~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs-~Dg~I~VWd~~t~~~~~~l---~~h~~~V~~l~  499 (732)
                      ..+..+++|++.....+..+..+ .|.+.|.+|+|+|||++|++++ .|+.|++|++........+   ..+...+..++
T Consensus        11 ~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~   89 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS   89 (333)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred             CCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEE
Confidence            34577889998766555554444 4778899999999999996655 5899999998765332222   23445678899


Q ss_pred             EcCCCCeEEEEeC-CCeEEEEecCCCCce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe--
Q 004737          500 FSPSLSRLATSSA-DRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--  575 (732)
Q Consensus       500 fspdg~~Lasgs~-Dg~I~IWDl~s~~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~--  575 (732)
                      |+|||++|++++. ++.|.+|+....... ......+...+.++.|+|++..+++....+..|.+|+...........  
T Consensus        90 ~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (333)
T d1ri6a_          90 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  169 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             EcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence            9999999999885 679999998865432 223445667789999999998888777777889999987654332111  


Q ss_pred             -----ccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCC----eEEEEEc------CCCCCEEEEEEeCCCCEEEEEe-
Q 004737          576 -----CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ----VCRLKLQ------GHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       576 -----~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~----~~i~~l~------~h~~~V~sla~spdg~~Lasgs-  638 (732)
                           .......++|++++..++.... .+...+|+....    .....+.      ........+++++++++++... 
T Consensus       170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~  249 (333)
T d1ri6a_         170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  249 (333)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence                 2234678999999988877765 467788876542    2222221      1234567889999999888776 


Q ss_pred             -CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCeEE
Q 004737          639 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL  698 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d-g~I~Iw--Dl~t~~~~  698 (732)
                       ++.+.+|++........+.........+..++|+|||++|++++.+ +.|.+|  |..++++.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         250 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             cCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence             7799999998765444444444556677889999999998888764 689998  55677654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=3.6e-19  Score=184.92  Aligned_cols=265  Identities=8%  Similarity=0.039  Sum_probs=195.3

Q ss_pred             CCceeeeeecCCCceeEEEEEec-CCCCCeEEEEEcCCCCEEE-EEECCCcEEEEEcCCCeEEEEeccCC------CceE
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHT------QWIT  496 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~-~H~~~V~~lafSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~------~~V~  496 (732)
                      .+..+.+||..++..   +.++. .|...+.+++|+|||++++ ++..++.|++||+.+++.+..+....      ..+.
T Consensus        16 ~~~~v~v~D~~t~~~---~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~   92 (346)
T d1jmxb_          16 YPNNLHVVDVASDTV---YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY   92 (346)
T ss_dssp             TTTEEEEEETTTTEE---EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred             CCCEEEEEECCCCCE---EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE
Confidence            355778889988854   44444 4566789999999999875 45578999999999999988775332      2456


Q ss_pred             EEEEcCCCCeEEEEe------------CCCeEEEEecCCCCceeEEee--cCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737          497 DVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  562 (732)
Q Consensus       497 ~l~fspdg~~Lasgs------------~Dg~I~IWDl~s~~~~~~~l~--~h~~~V~sl~fspdg~~llaSgs~Dg~I~i  562 (732)
                      .++|+|||+++++++            .+..+.+||..++.. ...+.  .....+..+.+.+++ .++++   +..+.+
T Consensus        93 ~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~  167 (346)
T d1jmxb_          93 SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFPMPRQVYLMRAADDG-SLYVA---GPDIYK  167 (346)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEECCSSCCCEEECTTS-CEEEE---SSSEEE
T ss_pred             EEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-eeEEEeeeccCceEEEEecCCC-EEEEe---CCcceE
Confidence            889999999988775            477899999887553 22221  123446666777665 44433   356899


Q ss_pred             EECCCCeeeeEEeccCCeeEEEEeCCCCE--------------------------EEEEEcCCeEEEEECCCCeEEE-EE
Q 004737          563 WSINNGSCAGVFKCQSGATQMRFQPRLGR--------------------------ILAAAIENYISILDVETQVCRL-KL  615 (732)
Q Consensus       563 WDl~t~~~i~~~~~~~~i~~v~~sp~g~~--------------------------ll~~s~dg~I~IwDl~t~~~i~-~l  615 (732)
                      |++.+++.+..+........+.++|++..                          ++.+..+..+.+||+.++.... .+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (346)
T d1jmxb_         168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF  247 (346)
T ss_dssp             ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred             EEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEe
Confidence            99999998888765544444444444332                          2223345568889998876544 44


Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          616 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       616 ~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      ..+...+.++.+++++.+++...++.|++||+.++   +.+..+. ....+.+++|+|||++|++++.++.|++||+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         248 ADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR---KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EECSSCEEEEEECSSCTTEEEEEESEEEEEETTTT---EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             ecccceeEEEEEeCCCCEEEEecCCeEEEEECCCC---cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccC
Confidence            56788899999999999988888889999999887   5666554 4567899999999999999999999999999999


Q ss_pred             eEE-EEc
Q 004737          696 KTL-TLS  701 (732)
Q Consensus       696 ~~~-~~~  701 (732)
                      +.+ ++.
T Consensus       324 ~~i~~i~  330 (346)
T d1jmxb_         324 EKVKNIK  330 (346)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            988 443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.7e-18  Score=176.99  Aligned_cols=269  Identities=10%  Similarity=0.184  Sum_probs=192.4

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEE--EeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeE--EeecCCcce
Q 004737          464 LLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLR--TFTGHSTTV  538 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~--~l~~h~~~V  538 (732)
                      .+++++.|++|+||++.+...+.  ....|.+.|.+|+|+|||++|++++ .|+.|++|++........  ....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            35677789999999987543322  2235788999999999999986665 489999999986553322  223345567


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEe---ccCCeeEEEEeCCCCEEEEEEcC-CeEEEEECCCCeEEE-
Q 004737          539 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRL-  613 (732)
Q Consensus       539 ~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~---~~~~i~~v~~sp~g~~ll~~s~d-g~I~IwDl~t~~~i~-  613 (732)
                      ..++|+|+|+.+++++..++.|.+|+...........   ....+.++.++|+++++++++.+ ..|.+|+........ 
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            8899999998888777778899999988766554433   34557889999999998888864 679999987652221 


Q ss_pred             -----EEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCc-eeEEEee------cCCCceEEEEEeCCCCEEE
Q 004737          614 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG-ECIHELS------CTGNKFHSCVFHPTFPSLL  679 (732)
Q Consensus       614 -----~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~-~~i~~~~------~~~~~I~sl~fspdg~~L~  679 (732)
                           ...........++|++++.+++...  .+...+|++...... .......      ........+++++++++++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                 1223445678999999999888776  568888887654321 1222221      1234567789999999877


Q ss_pred             EEEc-CCeEEEEECCCCeEE----EEccCCCCeeEEEEeCCCCEEEEEE-CCCeEEEeC
Q 004737          680 VIGC-YETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  732 (732)
Q Consensus       680 sgs~-dg~I~IwDl~t~~~~----~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWD  732 (732)
                      +... ++.+.+|++......    ....+...+.+++|+|||++|++++ .++.|+||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            7765 458999988654322    3334556788999999999887776 468899984

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=3.5e-16  Score=165.50  Aligned_cols=275  Identities=10%  Similarity=0.007  Sum_probs=194.4

Q ss_pred             CceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccCCCce
Q 004737          426 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQWI  495 (732)
Q Consensus       426 d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~~~V  495 (732)
                      ...+.+||..++...   ..+..+...  .++|+|||++|++++          .++.|.|||..+++.+..+..+....
T Consensus        46 ~~~v~v~D~~tg~~~---~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~  120 (373)
T d2madh_          46 IIQQWVLDAGSGSIL---GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR  120 (373)
T ss_pred             CceEEEEECCCCCEE---EEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce
Confidence            344566777777544   345555543  799999999998875          35789999999999998887665543


Q ss_pred             -------EEEEEcCCCCeEEEEe--CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 004737          496 -------TDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  566 (732)
Q Consensus       496 -------~~l~fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~  566 (732)
                             ..+.|+++++.++...  .++.+.+|+......     ..+.....++.|+|+++.++++.+.|+.+.+||..
T Consensus       121 ~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~  195 (373)
T d2madh_         121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHA  195 (373)
T ss_pred             eEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcC
Confidence                   4468888888766654  356788888876442     22334567899999999998899999999999999


Q ss_pred             CCeeeeEEeccC-----C--eeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--EEcCCC----------CCEEEEEE
Q 004737          567 NGSCAGVFKCQS-----G--ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCW  627 (732)
Q Consensus       567 t~~~i~~~~~~~-----~--i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~--~l~~h~----------~~V~sla~  627 (732)
                      .++.........     .  ...+.+.++ ..++..+.++.+.+|+........  .+..+.          .....+++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (373)
T d2madh_         196 GGAAGAGLVGAMLTAAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             CceeeEEEeeeccccCccceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEE
Confidence            888776554211     1  223444444 456677788999999988765332  222121          22344566


Q ss_pred             eCCCCEEEE----------Ee-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEE--EEEEcCCeEEEEECCC
Q 004737          628 NTSGEYLAS----------VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL--LVIGCYETLELWNMTE  694 (732)
Q Consensus       628 spdg~~Las----------gs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L--~sgs~dg~I~IwDl~t  694 (732)
                      ++++..++.          .. ++.|.+||..++   +.+..+. +...+..++|+|||+.+  ++++.++.|++||+.+
T Consensus       275 ~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             ecCCCeEEEecCCCceEEeecCCCeEEEEECCCC---cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            666655442          33 568999999887   5555544 56778999999999853  5677888999999999


Q ss_pred             CeEE-EEccCCCCeeEEEEeCC
Q 004737          695 NKTL-TLSAHDKLVSSLAASTV  715 (732)
Q Consensus       695 ~~~~-~~~~h~~~V~sla~spd  715 (732)
                      ++.+ .+..+......|++.++
T Consensus       351 g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         351 GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCEEEEECCCCCCCcEEEEecC
Confidence            9998 56668788888887643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=2.1e-17  Score=173.36  Aligned_cols=271  Identities=11%  Similarity=0.039  Sum_probs=186.0

Q ss_pred             eEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CCCeEE
Q 004737          453 VESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVR  517 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~Dg~I~  517 (732)
                      +.-.+.+||++.+++..     .+..|.|||..+++.+.++..+...  .++|+|||++|++++          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            34446789999987764     3567999999999999988766544  799999999888654          478999


Q ss_pred             EEecCCCCceeEEeecCC-------cceEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEEeccCCe--------e
Q 004737          518 VWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA--------T  581 (732)
Q Consensus       518 IWDl~s~~~~~~~l~~h~-------~~V~sl~fspdg~~llaSg-s~Dg~I~iWDl~t~~~i~~~~~~~~i--------~  581 (732)
                      +||+.+++. ...+..+.       .....+.|++++..+++.. +.+..+.+|+..+++.+..+......        .
T Consensus        82 v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          82 VFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEECCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            999998764 44433222       2345689999987776543 45678999999999988877654322        2


Q ss_pred             EEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe
Q 004737          582 QMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  659 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~  659 (732)
                      .+.+++++..+++... ++.+.+++.....     ..+...+....+.+++..++.++ ++.+++|++..+.. ..+...
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~  234 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAV  234 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCE
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEecc
Confidence            2344444444333222 2233333332221     12344456677888888888877 88999999987632 122111


Q ss_pred             ecC----------CCceEEEEEeCCCCEEEEEEcCC----------eEEEEECCCCeEEEEccCCCCeeEEEEeCCCC--
Q 004737          660 SCT----------GNKFHSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG--  717 (732)
Q Consensus       660 ~~~----------~~~I~sl~fspdg~~L~sgs~dg----------~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~--  717 (732)
                      ..+          ......+++++++..+++...++          .|.+||..+++.+....+...+.+++|+||++  
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~  314 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPL  314 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCE
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeE
Confidence            111          12234578999999888776543          69999999999885445566789999999997  


Q ss_pred             EEEEEECCCeEEEeC
Q 004737          718 MVASASHDKCVKIWK  732 (732)
Q Consensus       718 ~LaSgs~DG~I~IWD  732 (732)
                      ++++++.|+.|+|||
T Consensus       315 l~v~~~~d~~i~v~D  329 (355)
T d2bbkh_         315 LYALSTGDKTLYIHD  329 (355)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCEEEEEE
Confidence            456677899999997

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=2.6e-16  Score=164.80  Aligned_cols=277  Identities=10%  Similarity=0.070  Sum_probs=187.1

Q ss_pred             CCceeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccCCC-
Q 004737          425 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-  493 (732)
Q Consensus       425 ~d~~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~~-  493 (732)
                      .+..+.+||..++....   ++..+.  +..++|||||++|++++          .|+.|++||+.+++.+..+..+.. 
T Consensus        26 ~~~~v~v~D~~tg~~~~---~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~  100 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIG---MIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP  100 (355)
T ss_dssp             SSEEEEEEETTTTEEEE---EEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred             CcCeEEEEECCCCcEEE---EEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc
Confidence            34556788888886544   344444  34799999999887643          478999999999998887754332 


Q ss_pred             ------ceEEEEEcCCCCeEEEEe--CCCeEEEEecCCCCceeEEeecCCc-------ceEEEEEcCCCCcEEEEEeCCC
Q 004737          494 ------WITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHST-------TVMSLDFHPSKEDLLCSCDNNS  558 (732)
Q Consensus       494 ------~V~~l~fspdg~~Lasgs--~Dg~I~IWDl~s~~~~~~~l~~h~~-------~V~sl~fspdg~~llaSgs~Dg  558 (732)
                            ....++|+++++++++++  .+..+.+|+..++.. +..+..+..       ....+.+++++..+++....++
T Consensus       101 ~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~  179 (355)
T d2bbkh_         101 RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG  179 (355)
T ss_dssp             CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred             eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCC
Confidence                  235689999999888775  457899999988653 444443321       2234555666555555555555


Q ss_pred             cEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEE--EEcCC----------CCCEEEEE
Q 004737          559 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGH----------KNQVHSVC  626 (732)
Q Consensus       559 ~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~--~l~~h----------~~~V~sla  626 (732)
                      .+.+++.......    ....+....+.+++..++.++.++.+++|++..+....  ....+          ......++
T Consensus       180 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  255 (355)
T d2bbkh_         180 TPEITHTEVFHPE----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  255 (355)
T ss_dssp             CCEEEECCCCSCT----TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             eEEEEecccccce----ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEE
Confidence            5555555433221    11224456778888999999999999999998875432  12111          12234588


Q ss_pred             EeCCCCEEEEEe-C----------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE--EEEEEcCCeEEEEECC
Q 004737          627 WNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--LLVIGCYETLELWNMT  693 (732)
Q Consensus       627 ~spdg~~Lasgs-D----------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~--L~sgs~dg~I~IwDl~  693 (732)
                      +++++..++... +          +.|.+||..++   +.+..+.. ...+.+++|+|||+.  ++++..++.|++||++
T Consensus       256 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC---cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            999999887655 2          36999999987   45555443 455789999999974  3445568899999999


Q ss_pred             CCeEE-EEccCCCCeeEEEEeCC
Q 004737          694 ENKTL-TLSAHDKLVSSLAASTV  715 (732)
Q Consensus       694 t~~~~-~~~~h~~~V~sla~spd  715 (732)
                      +++.+ .+..+......+.+..+
T Consensus       332 tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         332 SGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             TCCEEEEECCCCSSCCEEECCCC
T ss_pred             CCCEEEEEeCcCCCccEEEeCCC
Confidence            99988 55566666666665443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=2.3e-14  Score=152.25  Aligned_cols=277  Identities=10%  Similarity=-0.039  Sum_probs=186.7

Q ss_pred             CCCCeEEEEEcCCCCEEEE---EECCC--cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe----------CC
Q 004737          449 STSKVESCHFSPDGKLLAT---GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------AD  513 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Las---gs~Dg--~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs----------~D  513 (732)
                      +.+....++..++++....   ...++  .|.+||..+++.+..+..+...  .++|+|||++|++++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            4455556677788885322   23334  5777799999999988777654  589999999998865          36


Q ss_pred             CeEEEEecCCCCceeEEeecCC-------cceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEe
Q 004737          514 RTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ  586 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~-------~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~s  586 (732)
                      +.|.+||..+.+. ...+..+.       .....++|+|||+.++++...++.|.+||+.+++.+..+.........  .
T Consensus        96 ~~v~v~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~  172 (368)
T d1mdah_          96 DYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH--P  172 (368)
T ss_dssp             EEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE--E
T ss_pred             CeEEEEECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc--c
Confidence            7899999998764 44443322       223468999999988877777899999999999999888765443211  1


Q ss_pred             CCCCEEEEEEcCCeEEEEECCCCeEEEEE------cCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEee
Q 004737          587 PRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS  660 (732)
Q Consensus       587 p~g~~ll~~s~dg~I~IwDl~t~~~i~~l------~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~  660 (732)
                      .....+++.+.||.+.+|++.........      ..+...+..+.+.+++..+.. .++.++++++..... ..+....
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~~~~~~~  250 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGA-TMKAAID  250 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCC-EEECCCC
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecCCce-EEEeecc
Confidence            22345666777888888887655332221      223344556777777655543 355666777655421 1111111


Q ss_pred             cC----------CCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCeEEEEccCCCCeeEEEEeCCCC-E-E
Q 004737          661 CT----------GNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-M-V  719 (732)
Q Consensus       661 ~~----------~~~I~sl~fspdg~~L~sgs~dg---------~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~-~-L  719 (732)
                      ..          ......+++++++..+++...++         .|++||..+++.+....+...+.+++|+||++ + +
T Consensus       251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly  330 (368)
T d1mdah_         251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNY  330 (368)
T ss_dssp             SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEE
T ss_pred             cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEE
Confidence            10          11234578999998877764332         59999999999886555667899999999997 3 4


Q ss_pred             EEEECCCeEEEeC
Q 004737          720 ASASHDKCVKIWK  732 (732)
Q Consensus       720 aSgs~DG~I~IWD  732 (732)
                      +++..|+.|+|||
T Consensus       331 ~s~~~~~~v~v~D  343 (368)
T d1mdah_         331 ANSAGTEVLDIYD  343 (368)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEE
Confidence            5666789999997

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.57  E-value=2.9e-14  Score=155.13  Aligned_cols=258  Identities=12%  Similarity=0.032  Sum_probs=186.2

Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEecc------------------------------CCCceEEEEEcCCCCeEEEEe-CC
Q 004737          465 LATGGHDKKAVLWCTESFTVKSTLEE------------------------------HTQWITDVRFSPSLSRLATSS-AD  513 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~~t~~~~~~l~~------------------------------h~~~V~~l~fspdg~~Lasgs-~D  513 (732)
                      +++++.+|.|+||++.+++.+.++..                              |.-.+.+..+.|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56778899999999999998887632                              223345555678999986664 67


Q ss_pred             CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE------------------EEEECCCCeeeeEEe
Q 004737          514 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI------------------RYWSINNGSCAGVFK  575 (732)
Q Consensus       514 g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I------------------~iWDl~t~~~i~~~~  575 (732)
                      ..|.+||+++.+........+...+..++|+|+++..++++..+..+                  ..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            89999999987643333334667899999999988655555433333                  558999988888888


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEcCC-----------------------------------------eEEEEECCCCeEEEE
Q 004737          576 CQSGATQMRFQPRLGRILAAAIEN-----------------------------------------YISILDVETQVCRLK  614 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~dg-----------------------------------------~I~IwDl~t~~~i~~  614 (732)
                      .......+.|+|+|+++++++.+.                                         .+.+++......+..
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence            888899999999999999887542                                         334444444455555


Q ss_pred             EcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCC--------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          615 LQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       615 l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~--------~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      +..... ...+.++|||+|+++++  +++|.|||+.+..        ...++.......-......|+++|..+.+...|
T Consensus       254 IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         254 IPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             ECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             EeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence            654433 57899999999998876  8999999986521        112333322333445667899999877777789


Q ss_pred             CeEEEEECCC----------CeEE-EE-----ccCCCCeeEEEEeCCCCEEEEEE
Q 004737          685 ETLELWNMTE----------NKTL-TL-----SAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       685 g~I~IwDl~t----------~~~~-~~-----~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      ..|..|++..          ...+ .+     .+|...+.+.+++|||++|++++
T Consensus       333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            9999999741          1222 33     47777778888999999999994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=3.1e-13  Score=143.42  Aligned_cols=269  Identities=11%  Similarity=0.021  Sum_probs=173.2

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEEcCCCeEEEEeccCCC----
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ----  493 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~~----  493 (732)
                      .+.+||..++..   +..+.++...  .++|+|||++|++++          .|+.|.+||..+++.+..+..+..    
T Consensus        47 ~~~~~d~~~~~~---~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~  121 (368)
T d1mdah_          47 ENWVSCAGCGVT---LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS  121 (368)
T ss_dssp             EEEEEETTTTEE---EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred             eEEEEeCCCCcE---EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec
Confidence            344556666654   3345555544  589999999988765          367899999999999888764432    


Q ss_pred             ---ceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 004737          494 ---WITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  569 (732)
Q Consensus       494 ---~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~  569 (732)
                         ....++|+|||++|+++. .++.|.+||+.+.+. ...+..+....    +.+.+...++..+.||.+.+|++....
T Consensus       122 ~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             ccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE-eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCc
Confidence               234689999999998886 479999999998763 55554443322    233445566677788888888886554


Q ss_pred             eeeEEec-------cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CC----------CCCEEEEEEeCC
Q 004737          570 CAGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GH----------KNQVHSVCWNTS  630 (732)
Q Consensus       570 ~i~~~~~-------~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h----------~~~V~sla~spd  630 (732)
                      .......       ...+..+.+.+++..+  ....+.++++++..........  .+          ......++++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~  274 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLV--WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCEEETTTTEEE--ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             eeeeeeecccccccccceeecccccCcEEE--EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCC
Confidence            3332211       1123445666664333  3345667777776554332211  11          112235788999


Q ss_pred             CCEEEEEe--C--------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCE-EE-EEEcCCeEEEEECCCCeEE
Q 004737          631 GEYLASVS--D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LL-VIGCYETLELWNMTENKTL  698 (732)
Q Consensus       631 g~~Lasgs--D--------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~-L~-sgs~dg~I~IwDl~t~~~~  698 (732)
                      +..++...  +        ..|.+||..++   +.+..+. ....+..++|+|||+. ++ +...++.|++||..+++.+
T Consensus       275 ~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         275 TDGIMILTVEHSRSCLAAAENTSSVTASVG---QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSC---CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCEEEEEecCCCceeecCCceEEEEECCCC---cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            88776654  2        25999999988   4555444 3456888999999974 43 4445789999999999988


Q ss_pred             EEccCCCCeeEEEE
Q 004737          699 TLSAHDKLVSSLAA  712 (732)
Q Consensus       699 ~~~~h~~~V~sla~  712 (732)
                      ....-......|++
T Consensus       351 ~~i~~g~~P~~l~~  364 (368)
T d1mdah_         351 SSVELDKGPESLSV  364 (368)
T ss_dssp             EECCCCSCCCEEEC
T ss_pred             EEEECCCCCCEEEE
Confidence            44433333455544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.53  E-value=6e-13  Score=145.99  Aligned_cols=286  Identities=13%  Similarity=0.010  Sum_probs=169.2

Q ss_pred             eeeeeecCCCceeEEE--EEecCCCCCeEEEEEcCCCCEEEEEEC---------CCcEEEEEcCCCeEEEEeccCCCceE
Q 004737          428 VGRSAEVGKGFTFTEF--QLIPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWIT  496 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v--~~l~~H~~~V~~lafSpdg~~Lasgs~---------Dg~I~VWd~~t~~~~~~l~~h~~~V~  496 (732)
                      .+.+|+..++.....+  ..+..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..|...+.
T Consensus        37 ~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~  115 (470)
T d2bgra1          37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQ  115 (470)
T ss_dssp             CEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEE
T ss_pred             cEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCcccc
Confidence            3678888888654322  245667788999999999999998753         46789999999874 45778899999


Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec-----------------CCcceEEEEEcCCCCcEEEEEeCCCc
Q 004737          497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSE  559 (732)
Q Consensus       497 ~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~-----------------h~~~V~sl~fspdg~~llaSgs~Dg~  559 (732)
                      .+.|+|||++||.. .++.+.+|+..++........+                 ..+....+.|+|||+.+++...++..
T Consensus       116 ~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~  194 (470)
T d2bgra1         116 WVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE  194 (470)
T ss_dssp             EEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT
T ss_pred             ccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCc
Confidence            99999999999996 5778999999876632221111                 12334568899999877765544444


Q ss_pred             EEEEEC-----------------------------------CCCeeeeEEe------------ccCCeeEEEEeCCCCEE
Q 004737          560 IRYWSI-----------------------------------NNGSCAGVFK------------CQSGATQMRFQPRLGRI  592 (732)
Q Consensus       560 I~iWDl-----------------------------------~t~~~i~~~~------------~~~~i~~v~~sp~g~~l  592 (732)
                      |..|++                                   ..+.......            ....+..+.|.+++..+
T Consensus       195 v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  274 (470)
T d2bgra1         195 VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERIS  274 (470)
T ss_dssp             CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEE
T ss_pred             CceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCcee
Confidence            444432                                   1111110000            00113457777776655


Q ss_pred             EEEEc-CC-----eEEEEECCCCeEEEEEc------CCCCC-----EEEEEEeCCC--CEEEEEe-CCe--EEEEECCCC
Q 004737          593 LAAAI-EN-----YISILDVETQVCRLKLQ------GHKNQ-----VHSVCWNTSG--EYLASVS-DEL--VRVWSIGSG  650 (732)
Q Consensus       593 l~~s~-dg-----~I~IwDl~t~~~i~~l~------~h~~~-----V~sla~spdg--~~Lasgs-Dg~--I~IWDl~t~  650 (732)
                      +.... .+     .+..+|..++.......      .....     -....|.+++  .+++... ||.  |++|+....
T Consensus       275 ~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~  354 (470)
T d2bgra1         275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (470)
T ss_dssp             EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             EEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCC
Confidence            54332 22     24445566665433211      01111     1122344443  3344444 764  555565443


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEE-EcCC------eEEEEECCCCeEE-E----EccCCCCeeEEEEeCCCCE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCYE------TLELWNMTENKTL-T----LSAHDKLVSSLAASTVNGM  718 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sg-s~dg------~I~IwDl~t~~~~-~----~~~h~~~V~sla~spdg~~  718 (732)
                          ....+......|..+ ++++++.++.. ..++      .|+-.++..+... .    +..|...+..++|||||++
T Consensus       355 ----~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky  429 (470)
T d2bgra1         355 ----DCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKY  429 (470)
T ss_dssp             ----CCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSE
T ss_pred             ----ceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCE
Confidence                233344445556665 44455555443 3222      2555566654333 2    2367888999999999998


Q ss_pred             EE
Q 004737          719 VA  720 (732)
Q Consensus       719 La  720 (732)
                      ++
T Consensus       430 ~~  431 (470)
T d2bgra1         430 YQ  431 (470)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.39  E-value=9.4e-12  Score=135.03  Aligned_cols=246  Identities=11%  Similarity=0.066  Sum_probs=166.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCeEEEEec-cCCCceEEEEEcCCCC--eEEEEeCCC----------
Q 004737          449 STSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS--RLATSSADR----------  514 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs-~Dg~I~VWd~~t~~~~~~l~-~h~~~V~~l~fspdg~--~Lasgs~Dg----------  514 (732)
                      |.-.+.+..++|||++|++.. .++.|.+||+++++....+. .+...+..++|+|+++  |++..+.+.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            445566777789999986665 67899999999999988775 3567899999999988  444444332          


Q ss_pred             -------eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC-------------------------------
Q 004737          515 -------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-------------------------------  556 (732)
Q Consensus       515 -------~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~-------------------------------  556 (732)
                             .+..+|..+..... .+.. ...+..+.|+|+|+.+++++..                               
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~-qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAW-QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEE-EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             ccccccceEEeecCccceeeE-EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                   23557777755433 3332 2457889999999888877643                               


Q ss_pred             ---------CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE-cCCeEEEEECCCCe-----------EEEEE
Q 004737          557 ---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQV-----------CRLKL  615 (732)
Q Consensus       557 ---------Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s-~dg~I~IwDl~t~~-----------~i~~l  615 (732)
                               ++.+.+++....+.+..+........+.++|+|+++++++ .+++|.+||+++..           ++.-.
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence                     2345555555556666776667788899999999987655 57999999986522           11111


Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC------CC-CceeEEEee-----cCCCceEEEEEeCCCCEEEEEE
Q 004737          616 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GS-KGECIHELS-----CTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       616 ~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t------~~-~~~~i~~~~-----~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      ....-.....+|+++|..+.+.. |..|..|++..      +. ....+..+.     +|...+.+.+++|||+||++++
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            11112234568999998777777 99999999742      11 112333443     4444455567899999999995


Q ss_pred             c---CC----------eEEEEECCCCe
Q 004737          683 C---YE----------TLELWNMTENK  696 (732)
Q Consensus       683 ~---dg----------~I~IwDl~t~~  696 (732)
                      .   |.          +-.++|+...+
T Consensus       388 k~s~dr~~~~g~~~~~~~q~~~i~~~~  414 (441)
T d1qnia2         388 KFSKDRFLPVGPLHPENDQLIDISGEE  414 (441)
T ss_dssp             SCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred             ccccccCcCCCCCCCccceeEEecCCe
Confidence            4   32          45677776544

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.36  E-value=1.7e-11  Score=134.05  Aligned_cols=138  Identities=15%  Similarity=0.115  Sum_probs=109.6

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc-----CCCceEEEEEcCCCCeEEEEeC---------CCeEEEEe
Q 004737          455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSA---------DRTVRVWD  520 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-----h~~~V~~l~fspdg~~Lasgs~---------Dg~I~IWD  520 (732)
                      .+.|.+|++++..  .|+.|.+||+.+++....+..     |...|.++.|+||+++|+.++.         ++.+.|||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4789999988764  578999999999988766543     4578999999999999998853         56789999


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-------------------cCCee
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------------------QSGAT  581 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-------------------~~~i~  581 (732)
                      +.++.  ...+..|...+..+.|+|||..++++.  ++.+++|+..+++.......                   .+...
T Consensus        99 ~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          99 LNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             TTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             CCCCc--ccccccCCccccccccccCcceeeEee--cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            99865  566788899999999999998877643  67899999998876654321                   12245


Q ss_pred             EEEEeCCCCEEEEEEcC
Q 004737          582 QMRFQPRLGRILAAAIE  598 (732)
Q Consensus       582 ~v~~sp~g~~ll~~s~d  598 (732)
                      .+.|+|+|++|+....|
T Consensus       175 ~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             CEEECTTSSEEEEEEEE
T ss_pred             ccEECCCCCccceeEec
Confidence            67899999999988764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.1e-10  Score=112.03  Aligned_cols=233  Identities=13%  Similarity=0.136  Sum_probs=160.8

Q ss_pred             cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCC---eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCc
Q 004737          473 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  549 (732)
Q Consensus       473 ~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg---~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~  549 (732)
                      .|.|.|.+..... .+..+...+...+|||||+.||....+.   .+.+.+.....  ...+..+........|+|++..
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence            5777776644443 3444567789999999999999776543   46666666544  4566667888899999999988


Q ss_pred             EEEEEeCCCcEEEE--ECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEEE
Q 004737          550 LLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHS  624 (732)
Q Consensus       550 llaSgs~Dg~I~iW--Dl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~V~s  624 (732)
                      +++....++...++  .....................+++++..++..+. ++  .|.++++..+... .+..+......
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~  175 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD  175 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred             eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence            88777656544443  3333333343344444566678888777776654 33  5677777766433 33345667788


Q ss_pred             EEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCeE
Q 004737          625 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT  697 (732)
Q Consensus       625 la~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg---~I~IwDl~t~~~  697 (732)
                      ..|+|+++.++..+  .+  .|.+.+....   . . .............|+|||++|+..+..+   .|++|++..+..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~---~-~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG---G-V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTC---C-E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccc---c-c-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            89999999988877  44  4445554443   1 2 2233455667889999999988776543   799999999988


Q ss_pred             EEEccCCCCeeEEEEeC
Q 004737          698 LTLSAHDKLVSSLAAST  714 (732)
Q Consensus       698 ~~~~~h~~~V~sla~sp  714 (732)
                      ..+....+.+...+|+|
T Consensus       251 ~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         251 ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECCCSSSEEEEEEECC
T ss_pred             EEEeCCCCcEEeEEeCC
Confidence            88888888889999998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.22  E-value=6.1e-09  Score=110.45  Aligned_cols=248  Identities=9%  Similarity=0.015  Sum_probs=154.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCC-CeEEEEe-ccCCCceEEEEEcCCCCeEE--EEe-CCCeEEEEecC
Q 004737          448 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLA--TSS-ADRTVRVWDTE  522 (732)
Q Consensus       448 ~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l-~~h~~~V~~l~fspdg~~La--sgs-~Dg~I~IWDl~  522 (732)
                      .+...+.-|+|++|+++|+++.. +.+..|.+.. +...... .........+.++++++.++  ++. ..+.|..+.+.
T Consensus        37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence            34555778999999999988764 5677776653 3332221 12233456778888887443  322 23555555443


Q ss_pred             CCCceeE----------------EeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeee--EEe---ccCCe
Q 004737          523 NPDYSLR----------------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAG--VFK---CQSGA  580 (732)
Q Consensus       523 s~~~~~~----------------~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~i~--~~~---~~~~i  580 (732)
                      .......                ........+.++.|+|+|++++++......|.+|++... ....  ...   .....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            2111110                011122347899999999888877666678888886543 2221  111   23568


Q ss_pred             eEEEEeCCCCEEEEEEc-CCeEEEEECCCCe--EEEE---Ec--------------CCCCCEEEEEEeCCCCEEEEEe--
Q 004737          581 TQMRFQPRLGRILAAAI-ENYISILDVETQV--CRLK---LQ--------------GHKNQVHSVCWNTSGEYLASVS--  638 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~--~i~~---l~--------------~h~~~V~sla~spdg~~Lasgs--  638 (732)
                      ..++|+|+++++++... ++.|.+||+....  .+..   +.              .+......+.++|+|++|+++.  
T Consensus       196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~  275 (365)
T d1jofa_         196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence            89999999999887776 6899999987653  2221   11              1112356789999999998875  


Q ss_pred             CC-----eEEEEECCCCCCce---eEEEeecCCCceEEEEEeC-CCCEEEEEEc-CCeEEEEECCCCe
Q 004737          639 DE-----LVRVWSIGSGSKGE---CIHELSCTGNKFHSCVFHP-TFPSLLVIGC-YETLELWNMTENK  696 (732)
Q Consensus       639 Dg-----~I~IWDl~t~~~~~---~i~~~~~~~~~I~sl~fsp-dg~~L~sgs~-dg~I~IwDl~t~~  696 (732)
                      +.     .|..|++.......   .+......+.....++++| +|++|+++.. ++.|.+|++....
T Consensus       276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            33     37777776543211   1222223445567789998 8998888864 5689999876554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=7.3e-09  Score=103.32  Aligned_cols=222  Identities=15%  Similarity=0.148  Sum_probs=150.1

Q ss_pred             ecCCCCCeEEEEEcCCCCEEEEEECCC---cEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC-CCeEEEEec
Q 004737          446 IPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT  521 (732)
Q Consensus       446 l~~H~~~V~~lafSpdg~~Lasgs~Dg---~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-Dg~I~IWDl  521 (732)
                      +..+...+...+|||||+.||....+.   .+.+.+...+... .+..+...+....|+|+|+.++.... ++...++..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence            334566788999999999998776543   4667777766554 44457788899999999998887664 333333333


Q ss_pred             CCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC
Q 004737          522 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       522 ~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~--I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                      .....................+++++..++++...++.  |.++++..+................|+|++..++..+.++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  192 (269)
T d2hqsa1         113 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG  192 (269)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             ccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecC
Confidence            32222234444455556677788888788877766664  5566666655444444445567789999999998887754


Q ss_pred             ---eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--C--CeEEEEECCCCCCceeEEEeecCCCceEEEEEe
Q 004737          600 ---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  672 (732)
Q Consensus       600 ---~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--D--g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fs  672 (732)
                         .|.++|...+...  +..+........|+|||++|+..+  .  ..|++|++....    ...+......+...+|+
T Consensus       193 ~~~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~----~~~lt~~~g~~~~p~WS  266 (269)
T d2hqsa1         193 GQQHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWS  266 (269)
T ss_dssp             SCEEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEEC
T ss_pred             CceeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC----EEEEeCCCCcEEeEEeC
Confidence               4556666665442  333556677889999999987766  3  278999997752    33455556677888999


Q ss_pred             CC
Q 004737          673 PT  674 (732)
Q Consensus       673 pd  674 (732)
                      |-
T Consensus       267 P~  268 (269)
T d2hqsa1         267 PY  268 (269)
T ss_dssp             CC
T ss_pred             CC
Confidence            83

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.17  E-value=7.8e-09  Score=109.59  Aligned_cols=267  Identities=9%  Similarity=0.100  Sum_probs=163.2

Q ss_pred             EEEEEC--CCcEEEE--EcCCCeEE--EEe-ccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE-eecCCc
Q 004737          465 LATGGH--DKKAVLW--CTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHST  536 (732)
Q Consensus       465 Lasgs~--Dg~I~VW--d~~t~~~~--~~l-~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~-l~~h~~  536 (732)
                      |++|+.  .+.|.++  |.++++..  ... ......+..|+|++++++|+++.. +.+..|.+......... ......
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            555543  4456444  55555442  222 224455778999999999988764 56888887754322211 112234


Q ss_pred             ceEEEEEcCCCCcEEEEEe--CCCcEEEEECCC-CeeeeE---------------E--eccCCeeEEEEeCCCCEEEEEE
Q 004737          537 TVMSLDFHPSKEDLLCSCD--NNSEIRYWSINN-GSCAGV---------------F--KCQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs--~Dg~I~iWDl~t-~~~i~~---------------~--~~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      ....+.++++++.++++..  ..+.|..+.+.. +.....               .  .....+.++.|+|++++++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            4567788888765544332  345565554422 111111               1  1123478999999999999887


Q ss_pred             c-CCeEEEEECCCC-eE--EEEEc--CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCcee--EEEeec-----
Q 004737          597 I-ENYISILDVETQ-VC--RLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSC-----  661 (732)
Q Consensus       597 ~-dg~I~IwDl~t~-~~--i~~l~--~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~--i~~~~~-----  661 (732)
                      . ...|.+|+.... ..  ...+.  ........++|+|+++++++..  ++.|.+|++........  +.....     
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence            6 357888876543 22  12221  2346789999999999988777  78999999976543221  111111     


Q ss_pred             ---------CCCceEEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEE----E---EccCCCCeeEEEEeC-CCCE
Q 004737          662 ---------TGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMTENKTL----T---LSAHDKLVSSLAAST-VNGM  718 (732)
Q Consensus       662 ---------~~~~I~sl~fspdg~~L~sgs~d------g~I~IwDl~t~~~~----~---~~~h~~~V~sla~sp-dg~~  718 (732)
                               .......+.++|+|++|+++...      ..|..|++.....+    .   .........+++++| +|++
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~  323 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence                     11235678999999999887532      24777777543222    1   122345678899998 7898


Q ss_pred             EEEEE-CCCeEEEeC
Q 004737          719 VASAS-HDKCVKIWK  732 (732)
Q Consensus       719 LaSgs-~DG~I~IWD  732 (732)
                      |+++. .++.|.||+
T Consensus       324 l~va~~~s~~v~v~~  338 (365)
T d1jofa_         324 MAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEECSSSCEEEEEE
T ss_pred             EEEEeCCCCeEEEEE
Confidence            77765 678999984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.15  E-value=1.1e-08  Score=105.12  Aligned_cols=235  Identities=10%  Similarity=0.065  Sum_probs=158.7

Q ss_pred             EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecC
Q 004737          443 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  522 (732)
Q Consensus       443 v~~l~~H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~  522 (732)
                      +..+.... .+..++++|||+++++...+++|..|+....  ...+......+.+++|.+||+++++...++.+.+|+..
T Consensus        21 ~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          21 ITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             EEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             EEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            34444322 5889999999999999999999999986543  23344566789999999999999998888889888876


Q ss_pred             CCCceeEEee--cCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-----------CCeeEEEEeCCC
Q 004737          523 NPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----------SGATQMRFQPRL  589 (732)
Q Consensus       523 s~~~~~~~l~--~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-----------~~i~~v~~sp~g  589 (732)
                      ........+.  ........+++.+++ .++++.+.++.+..+|...+.........           .....+.+.  +
T Consensus        98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~  174 (302)
T d2p4oa1          98 KSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--G  174 (302)
T ss_dssp             CTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--T
T ss_pred             ccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--C
Confidence            5443333332  244568899999986 56667777888999998876544332211           123445554  3


Q ss_pred             CEEE-EEEcCCeEEEEECCCCeEEE--EEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCc
Q 004737          590 GRIL-AAAIENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  665 (732)
Q Consensus       590 ~~ll-~~s~dg~I~IwDl~t~~~i~--~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~  665 (732)
                      ..++ +.+..+.|+.++........  ...........++|+++|.++++.. ++.|..|+....  ...+......-..
T Consensus       175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--~~~~~~~~~~~~~  252 (302)
T d2p4oa1         175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--TTIIAQAEQGVIG  252 (302)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--EEEEECGGGTCTT
T ss_pred             CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--EEEEEecCCCCCC
Confidence            4444 44557889999876542111  1111233456799999999777766 888999877542  1233333334456


Q ss_pred             eEEEEE---eCCCCEEEEEEcCC
Q 004737          666 FHSCVF---HPTFPSLLVIGCYE  685 (732)
Q Consensus       666 I~sl~f---spdg~~L~sgs~dg  685 (732)
                      .++++|   .+|++.|++++..+
T Consensus       253 pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         253 STAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             EEEEEECCSTTTTTEEEEEECTT
T ss_pred             ceEEEEcCCCCCCCEEEEECCCC
Confidence            889999   67888888776543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.12  E-value=1.3e-08  Score=104.68  Aligned_cols=237  Identities=9%  Similarity=0.031  Sum_probs=159.7

Q ss_pred             CCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcE
Q 004737          481 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  560 (732)
Q Consensus       481 t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I  560 (732)
                      ..+.+..+... ..+..+++.|||+++++...+++|..||... .  ...+......+.+++|.++|+ ++++...++.+
T Consensus        17 ~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~--~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~   91 (302)
T d2p4oa1          17 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N--QQIHATVEGKVSGLAFTSNGD-LVATGWNADSI   91 (302)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C--EEEEEECSSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred             cccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C--EEEEEcCCCCcceEEEcCCCC-eEEEecCCceE
Confidence            34455556433 3688999999999999999999998888664 2  445555667899999999986 55566667778


Q ss_pred             EEEECCCC--eeeeEEe--ccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----------CCCCEEEEE
Q 004737          561 RYWSINNG--SCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----------HKNQVHSVC  626 (732)
Q Consensus       561 ~iWDl~t~--~~i~~~~--~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~----------h~~~V~sla  626 (732)
                      ..|+....  .......  .......+++.+++..+++...++.|..+|...+........          .......+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~  171 (302)
T d2p4oa1          92 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK  171 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEE
T ss_pred             EEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccc
Confidence            87776432  2222222  234477899999987777777788999999988754433221          123456677


Q ss_pred             EeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEE--cc
Q 004737          627 WNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SA  702 (732)
Q Consensus       627 ~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~--~~  702 (732)
                      ++.  .+++.+.  .+.|..+++............ ........++|+++|.++++...++.|..|+.........  ..
T Consensus       172 ~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~  248 (302)
T d2p4oa1         172 RFG--NFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQ  248 (302)
T ss_dssp             EET--TEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGG
T ss_pred             ccC--CceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCC
Confidence            654  4444444  788999988765332222222 1233456799999999777777788999998765443322  23


Q ss_pred             CCCCeeEEEE---eCCCCEEEEEECC
Q 004737          703 HDKLVSSLAA---STVNGMVASASHD  725 (732)
Q Consensus       703 h~~~V~sla~---spdg~~LaSgs~D  725 (732)
                      .-..+++++|   ++|++.|+.++..
T Consensus       249 ~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         249 GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            4456899999   6788888776654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=1.1e-08  Score=102.83  Aligned_cols=234  Identities=10%  Similarity=-0.034  Sum_probs=154.1

Q ss_pred             CceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 004737          493 QWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  571 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i  571 (732)
                      ..-..|++.++|+++++.. ..+.|..++............+ ......+++.+++ .++++....+.|++++-.+...+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceee
Confidence            3458999999999766654 4577777777654432222222 2345788999986 46666666666777666655555


Q ss_pred             eEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCC
Q 004737          572 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  650 (732)
Q Consensus       572 ~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~  650 (732)
                      ........+..+++.++++.+++-..+..+..++..................+++++++++++++.. ++.|..+|....
T Consensus        92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            4444445678999999988776655567788888766543332222334567899999999877766 778999997764


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~-~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      .   ..............+++++++..+++....+.|..++.......... ..-.....|++++++.++++-..+++|+
T Consensus       172 ~---~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         172 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             C---EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             e---eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence            2   22222233455788999999986666656678888887655433332 3335678999999998877766677776


Q ss_pred             Ee
Q 004737          730 IW  731 (732)
Q Consensus       730 IW  731 (732)
                      ..
T Consensus       249 ~i  250 (260)
T d1rwia_         249 KL  250 (260)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.06  E-value=3.2e-07  Score=94.94  Aligned_cols=229  Identities=11%  Similarity=0.082  Sum_probs=152.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCC----CeEEEEecCCC
Q 004737          449 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP  524 (732)
Q Consensus       449 H~~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~D----g~I~IWDl~s~  524 (732)
                      ....+..++|.++|++.++-..++.|..|+.++.+....+.........++|.+||+++++...+    +.|...+....
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            33446789999999987777788999999998877666665666678999999999887776432    33444444443


Q ss_pred             CceeEEeecC---CcceEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737          525 DYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       525 ~~~~~~l~~h---~~~V~sl~fspdg~~llaSgs~------Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~  595 (732)
                      .  +..+..+   ...+..+++.++|. +.++...      .+.+..++...+........-.....++|+++++.|+++
T Consensus       118 ~--~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         118 N--LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             S--CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             e--eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEe
Confidence            3  2222222   23467899999985 4444322      234666665544443333333456789999999987666


Q ss_pred             Ec-CCeEEEEECCCC----eEE----EEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeec----
Q 004737          596 AI-ENYISILDVETQ----VCR----LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC----  661 (732)
Q Consensus       596 s~-dg~I~IwDl~t~----~~i----~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~----  661 (732)
                      .. .+.|+.||+...    ...    ............++++.+|+++++.. .+.|.+||. .+   +.+.++..    
T Consensus       195 d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~~  270 (319)
T d2dg1a1         195 ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGRD  270 (319)
T ss_dssp             EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTGG
T ss_pred             cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC---cEEEEEeCCCcC
Confidence            54 689999998642    111    11111223467899999999877776 889999996 44   45555442    


Q ss_pred             --CCCceEEEEEeCCCCEEEEEEcC
Q 004737          662 --TGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       662 --~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                        +...+.+++|.++...+++...+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         271 EGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCcCceeeeEEEeCCCCEEEEEcCC
Confidence              23457899999988877776653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.06  E-value=6.8e-08  Score=100.07  Aligned_cols=238  Identities=9%  Similarity=0.077  Sum_probs=155.1

Q ss_pred             CeEEEEEcCCCCEEEEEEC-------CCcEEEEEcCCCeEEEEeccC----CCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          452 KVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~-------Dg~I~VWd~~t~~~~~~l~~h----~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ....++|.++|+++++...       +++|..||..++.........    ...-..++|.++++.|+++.....|..+|
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            3667899999998776432       467999998887665443221    22356899999999888888878888888


Q ss_pred             cCCCCceeEEeecCC---cceEEEEEcCCCCcEEEEEeC---------------CCcEEEEECCCCeeeeEEeccCCeeE
Q 004737          521 TENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNGSCAGVFKCQSGATQ  582 (732)
Q Consensus       521 l~s~~~~~~~l~~h~---~~V~sl~fspdg~~llaSgs~---------------Dg~I~iWDl~t~~~i~~~~~~~~i~~  582 (732)
                      .+.....+.......   ...+.+++.++|..++ +-..               .|.|+.++.. ++.......-.....
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyv-td~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEE-ecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcceeee
Confidence            875432211111111   1357899999975444 4321               2345555543 444444443345678


Q ss_pred             EEEeCCCC----EEEEE-EcCCeEEEEECCCCeEE------EEEcC-CCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCC
Q 004737          583 MRFQPRLG----RILAA-AIENYISILDVETQVCR------LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS  649 (732)
Q Consensus       583 v~~sp~g~----~ll~~-s~dg~I~IwDl~t~~~i------~~l~~-h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t  649 (732)
                      ++|++++.    .|+++ +..+.|..||+.....+      ..+.. +......+++..+|+++++.. .+.|.+||...
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence            89998764    45554 45688999987643221      12222 223467899999999877766 78999999876


Q ss_pred             CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 004737          650 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE  694 (732)
Q Consensus       650 ~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t  694 (732)
                      +   ..+..+........+|+|.|+++.|++.. .++.|+.+++..
T Consensus       257 g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         257 G---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             B---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             C---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            6   34444555556789999999998666655 456888888643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.03  E-value=2.4e-08  Score=100.31  Aligned_cols=234  Identities=10%  Similarity=0.000  Sum_probs=148.4

Q ss_pred             CeEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEE
Q 004737          452 KVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  530 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasg-s~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~  530 (732)
                      .-.+++++++|++.++. +..+.|..++............-......++++++++++++....+.|++++-.+.. .+..
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~-~~~~   93 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVLP   93 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EECC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce-eeee
Confidence            35799999999976655 445677777655433322222222346788999999887777666667666554433 2222


Q ss_pred             eecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 004737          531 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ  609 (732)
Q Consensus       531 l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~  609 (732)
                      . .......++++.+++. ++++-..+..+..++........ ..........+++.++++.+++...++.|..||....
T Consensus        94 ~-~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          94 F-DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             C-CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             e-eeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            2 2234578999999864 55455556667777765433221 1122345678999999887777777889999998876


Q ss_pred             eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 004737          610 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETL  687 (732)
Q Consensus       610 ~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~-~~~~~~I~sl~fspdg~~L~sgs~dg~I  687 (732)
                      ...............|+++++|.++++.. .+.|..++.....    ...+ ...-.....+++++++..+++-..++.|
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~----~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI  247 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  247 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC----CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe----EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence            54443334556778999999998877776 6788888765432    1111 1222456789999998755554455566


Q ss_pred             EEEEC
Q 004737          688 ELWNM  692 (732)
Q Consensus       688 ~IwDl  692 (732)
                      +.++.
T Consensus       248 ~~i~~  252 (260)
T d1rwia_         248 VKLTS  252 (260)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            65544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.9e-08  Score=104.36  Aligned_cols=295  Identities=11%  Similarity=0.018  Sum_probs=170.4

Q ss_pred             eeeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEE---------CCCcEEEEEcCCCeEEEEe--ccCCCceE
Q 004737          428 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTL--EEHTQWIT  496 (732)
Q Consensus       428 ~~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l--~~h~~~V~  496 (732)
                      .+.++++.++.....+..-....-.+....||||+++|+...         ..+.+.|||+.+++.....  ......+.
T Consensus        38 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~  117 (465)
T d1xfda1          38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ  117 (465)
T ss_dssp             CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS
T ss_pred             cEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccc
Confidence            456677766654222222222334678889999999988764         3467899999987754432  22344566


Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcc-----------------eEEEEEcCCCCcEEEEEeCCCc
Q 004737          497 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-----------------VMSLDFHPSKEDLLCSCDNNSE  559 (732)
Q Consensus       497 ~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~-----------------V~sl~fspdg~~llaSgs~Dg~  559 (732)
                      ...|+|||+.||... ++.|.+.+...+.....+..+....                 -..+-|+|||+.+++.--++..
T Consensus       118 ~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~  196 (465)
T d1xfda1         118 YAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSR  196 (465)
T ss_dssp             BCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTT
T ss_pred             eeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccc
Confidence            789999999999885 6788888887655322222222221                 1467899999888876544444


Q ss_pred             EEE---------------------------------EECCCCeeeeEEecc------C-CeeEEEEeCCCCEEEEEEc-C
Q 004737          560 IRY---------------------------------WSINNGSCAGVFKCQ------S-GATQMRFQPRLGRILAAAI-E  598 (732)
Q Consensus       560 I~i---------------------------------WDl~t~~~i~~~~~~------~-~i~~v~~sp~g~~ll~~s~-d  598 (732)
                      |..                                 +|+..+.........      . -+..+.|.+++..++.... +
T Consensus       197 V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~  276 (465)
T d1xfda1         197 VPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA  276 (465)
T ss_dssp             SCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred             cceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc
Confidence            433                                 444332221111000      0 1456889988765554433 2


Q ss_pred             ---CeEEEEECCCCeEEEEEcC-CCCCE----EEEEEeCCCCEEEE--Ee--CC--eEEEEECCCC---CCceeEEEeec
Q 004737          599 ---NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLAS--VS--DE--LVRVWSIGSG---SKGECIHELSC  661 (732)
Q Consensus       599 ---g~I~IwDl~t~~~i~~l~~-h~~~V----~sla~spdg~~Las--gs--Dg--~I~IWDl~t~---~~~~~i~~~~~  661 (732)
                         ..|.++|..++++...+.. ....|    ....|+++|+.++.  .+  +|  .++.+++...   .....+..+..
T Consensus       277 q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~  356 (465)
T d1xfda1         277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS  356 (465)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred             cccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEecc
Confidence               2688899999977655443 22222    34578999874322  22  33  4444443211   11122223333


Q ss_pred             CCCceEEE-EEeCCCCEEEEEEcCC-----eEEEEECCCCeEE---EE-ccCCCCeeEEEEeCCCCEEEEEE
Q 004737          662 TGNKFHSC-VFHPTFPSLLVIGCYE-----TLELWNMTENKTL---TL-SAHDKLVSSLAASTVNGMVASAS  723 (732)
Q Consensus       662 ~~~~I~sl-~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~---~~-~~h~~~V~sla~spdg~~LaSgs  723 (732)
                      ..-.|..+ .|+.+++.|+..+...     .|+-.++..+...   +. .........+.|||++++++..+
T Consensus       357 G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~  428 (465)
T d1xfda1         357 GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC  428 (465)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred             CCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEe
Confidence            34445554 6888888776655422     3555555544322   11 13445678999999999887544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=1e-06  Score=89.03  Aligned_cols=233  Identities=10%  Similarity=0.152  Sum_probs=158.6

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEecc------CCCceEEEEEcCCCC-eEEEE-eCCCeEEEEecCC
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSLS-RLATS-SADRTVRVWDTEN  523 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~------h~~~V~~l~fspdg~-~Lasg-s~Dg~I~IWDl~s  523 (732)
                      .-..++++++|+++++-..++.|++||.+ ++.+..+..      .......+++..+.. ++++. +.++.|.+++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            46789999999988887778999999965 666666632      112345666665543 44433 3455777777653


Q ss_pred             CCceeEEe-ecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc---CCeeEEEEeCCCCEEEEEEcCC
Q 004737          524 PDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIEN  599 (732)
Q Consensus       524 ~~~~~~~l-~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~---~~i~~v~~sp~g~~ll~~s~dg  599 (732)
                       . ....+ .........+++.+++. ++++....+.+.+++.. ++.+..+...   .....+++.+++..+++....+
T Consensus       103 -~-~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         103 -Q-FVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             -C-EEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             -c-ceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc
Confidence             3 23333 23445678899998875 44455556778888865 5566655422   3467888999877776666778


Q ss_pred             eEEEEECCCCeEEEEEc--CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeec--CCCceEEEEEeC
Q 004737          600 YISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP  673 (732)
Q Consensus       600 ~I~IwDl~t~~~i~~l~--~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~--~~~~I~sl~fsp  673 (732)
                      .|++||.. ++.+..+.  +.......|+++++|+++++-.  +..|.+|+.. +   +.+..+..  .....+.+++.+
T Consensus       179 ~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G---~~~~~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         179 CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEEEEET
T ss_pred             ceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C---CEEEEEeCCCCCCCEeEEEEeC
Confidence            99999975 45555553  3455688999999999877754  4479999853 3   44444432  234578999999


Q ss_pred             CCCEEEEEEcCCeEEEEECCCC
Q 004737          674 TFPSLLVIGCYETLELWNMTEN  695 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~  695 (732)
                      +|. |+++..+..|++|.....
T Consensus       254 dG~-l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         254 DGS-VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TTE-EEEEETTTEEEEEECSCC
T ss_pred             CCc-EEEEeCCCeEEEEEeeee
Confidence            996 566678889999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.4e-06  Score=89.91  Aligned_cols=230  Identities=9%  Similarity=0.046  Sum_probs=149.2

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEe---CCCcEEEEECCCC
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNG  568 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs---~Dg~I~iWDl~t~  568 (732)
                      ...+..++|.++|+++++-..++.|..|+.+... ....+.........++|+++|..+++..+   ..+.|...+....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~-~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCe-EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            3445789999999977777788999999988754 34444455567889999999854443322   1234555566555


Q ss_pred             eeeeEEec---cCCeeEEEEeCCCCEEEEEEc------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-
Q 004737          569 SCAGVFKC---QSGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  638 (732)
Q Consensus       569 ~~i~~~~~---~~~i~~v~~sp~g~~ll~~s~------dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-  638 (732)
                      ........   ......+++.++|..+++...      .+.+..++........... .-...+.|+|+|+++.|+.+. 
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEecc
Confidence            54444332   233678999999875554322      2346666665443322222 234568899999999776666 


Q ss_pred             -CCeEEEEECCCCCCce-eE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc------cCCC
Q 004737          639 -DELVRVWSIGSGSKGE-CI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS------AHDK  705 (732)
Q Consensus       639 -Dg~I~IWDl~t~~~~~-~i----~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~------~h~~  705 (732)
                       .+.|..|++....... ..    ............+++..+|+.+++....+.|.+||- +++.+ .+.      .+..
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence             7899999987542211 11    111111233567999999997777778899999995 56665 332      3345


Q ss_pred             CeeEEEEeCCCCEEEEEEC
Q 004737          706 LVSSLAASTVNGMVASASH  724 (732)
Q Consensus       706 ~V~sla~spdg~~LaSgs~  724 (732)
                      .+++++|.++...+++...
T Consensus       276 ~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             BCCEEEECTTSCEEEEEEE
T ss_pred             eeeeEEEeCCCCEEEEEcC
Confidence            6889999998876666554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=1.4e-06  Score=87.91  Aligned_cols=229  Identities=13%  Similarity=0.136  Sum_probs=156.0

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec------CCcceEEEEEcCCCCcEEEE-EeCCCcEEEEECC
Q 004737          494 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSIN  566 (732)
Q Consensus       494 ~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~------h~~~V~sl~fspdg~~llaS-gs~Dg~I~iWDl~  566 (732)
                      ....|+++++++++++-..+..|++||.+ +.. +..+..      .......+++..+...++++ .+.++.|.+++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCE-EEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            46899999999988887778899999976 332 333321      11234556666654444444 3455678777764


Q ss_pred             CCeeeeEEec--cCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEE--cCCCCCEEEEEEeCCCCEEEEEe-CCe
Q 004737          567 NGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DEL  641 (732)
Q Consensus       567 t~~~i~~~~~--~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l--~~h~~~V~sla~spdg~~Lasgs-Dg~  641 (732)
                       ++....+..  ......+++.+++..+++....+.+.+++... +.+..+  ..+......+++.+++.++++.. .+.
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeeccccc
Confidence             555555542  23467899999988777777778888888654 445544  34566788999999998777766 789


Q ss_pred             EEEEECCCCCCceeEEEee--cCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEE-EEc--cCCCCeeEEEEeCC
Q 004737          642 VRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL-TLS--AHDKLVSSLAASTV  715 (732)
Q Consensus       642 I~IWDl~t~~~~~~i~~~~--~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~-~~~--~h~~~V~sla~spd  715 (732)
                      |++||...    ..+..+.  +.......+++.++|+.+++-.. +..|.+|+. +++.+ .+.  ......+.|++.++
T Consensus       180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             eeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            99999754    3444442  23445788999999985554333 347999984 56655 332  23346899999999


Q ss_pred             CCEEEEEECCCeEEEeC
Q 004737          716 NGMVASASHDKCVKIWK  732 (732)
Q Consensus       716 g~~LaSgs~DG~I~IWD  732 (732)
                      +.+++ ++.+..|++|+
T Consensus       255 G~l~V-~~~n~~v~~fr  270 (279)
T d1q7fa_         255 GSVVL-ASKDYRLYIYR  270 (279)
T ss_dssp             TEEEE-EETTTEEEEEE
T ss_pred             CcEEE-EeCCCeEEEEE
Confidence            87554 56889999985

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.86  E-value=9.2e-07  Score=91.25  Aligned_cols=236  Identities=9%  Similarity=-0.021  Sum_probs=148.9

Q ss_pred             CceEEEEEcCCCCeEEEEeC-------CCeEEEEecCCCCceeEEee---cCCcceEEEEEcCCCCcEEEEEeCCCcEEE
Q 004737          493 QWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  562 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~-------Dg~I~IWDl~s~~~~~~~l~---~h~~~V~sl~fspdg~~llaSgs~Dg~I~i  562 (732)
                      .....++|.++|+++++...       ++.|..||..++........   ........+.|.++++.++ +++....|..
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEE-EEECCCeEEE
Confidence            34677899999997776433       46788899887653222111   1123357899999976555 4454566888


Q ss_pred             EECCCCeeeeEEec-cC----CeeEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCeEEEEEcCCCCCE
Q 004737          563 WSINNGSCAGVFKC-QS----GATQMRFQPRLGRILAAAI---------------ENYISILDVETQVCRLKLQGHKNQV  622 (732)
Q Consensus       563 WDl~t~~~i~~~~~-~~----~i~~v~~sp~g~~ll~~s~---------------dg~I~IwDl~t~~~i~~l~~h~~~V  622 (732)
                      +|............ .+    ....+++.++|..+++-..               .|.|+.++... +..... ..-...
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~-~~~~~p  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVD-TAFQFP  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEE-EEESSE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEee-CCccee
Confidence            89875543322111 11    2577999999877765422               23455565543 222222 223345


Q ss_pred             EEEEEeCCCC----EEEEEe--CCeEEEEECCCCCCce---eEEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 004737          623 HSVCWNTSGE----YLASVS--DELVRVWSIGSGSKGE---CIHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNM  692 (732)
Q Consensus       623 ~sla~spdg~----~Lasgs--Dg~I~IWDl~t~~~~~---~i~~~~~~-~~~I~sl~fspdg~~L~sgs~dg~I~IwDl  692 (732)
                      +.++|++++.    +|+++.  .+.|..||+.......   .+..+... ......+++..+|+.+++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            7899998765    455554  7789999876442211   11222221 223567999999997777777889999998


Q ss_pred             CCCeEE-EEccCCCCeeEEEEeCCCCE-EEEEECCCeEEEe
Q 004737          693 TENKTL-TLSAHDKLVSSLAASTVNGM-VASASHDKCVKIW  731 (732)
Q Consensus       693 ~t~~~~-~~~~h~~~V~sla~spdg~~-LaSgs~DG~I~IW  731 (732)
                      +.+... .+......+++++|.++++. ++|.+.+|.|...
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            877655 44555678899999999874 4555667877654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3e-07  Score=100.39  Aligned_cols=260  Identities=13%  Similarity=0.117  Sum_probs=156.9

Q ss_pred             EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccC---CCceEEEEEcCCCCeEEEEe---------CCCeEEEEecCCC
Q 004737          457 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSS---------ADRTVRVWDTENP  524 (732)
Q Consensus       457 afSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---~~~V~~l~fspdg~~Lasgs---------~Dg~I~IWDl~s~  524 (732)
                      .|.+++.++.. ..+|.|.+||+.+++....+..+   ...+....|+||+++++...         ..+.+.|||+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57778776653 45788999999988765444332   23577889999999988764         3578999999986


Q ss_pred             Cce-eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-------------------CCeeEEE
Q 004737          525 DYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMR  584 (732)
Q Consensus       525 ~~~-~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-------------------~~i~~v~  584 (732)
                      ... +.........+....|+|+|..++++.  ++.|++.+...+..++.....                   ..-..+-
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            631 111122344566789999999888765  667999888776655444311                   1124677


Q ss_pred             EeCCCCEEEEEEcC-Ce---------------------------------EEEEECCCCeEEEEEc------CCCCCEEE
Q 004737          585 FQPRLGRILAAAIE-NY---------------------------------ISILDVETQVCRLKLQ------GHKNQVHS  624 (732)
Q Consensus       585 ~sp~g~~ll~~s~d-g~---------------------------------I~IwDl~t~~~i~~l~------~h~~~V~s  624 (732)
                      |+|+|++|+....| ..                                 +.++|+.++.......      .....+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999999887532 22                                 4445554432221111      11224678


Q ss_pred             EEEeCCCCEEEEEe--CC---eEEEEECCCCCCceeEEEeecCCCce----EEEEEeCCCCEEEEE--E-cCC--eEEEE
Q 004737          625 VCWNTSGEYLASVS--DE---LVRVWSIGSGSKGECIHELSCTGNKF----HSCVFHPTFPSLLVI--G-CYE--TLELW  690 (732)
Q Consensus       625 la~spdg~~Lasgs--Dg---~I~IWDl~t~~~~~~i~~~~~~~~~I----~sl~fspdg~~L~sg--s-~dg--~I~Iw  690 (732)
                      +.|++++++++...  +.   .|.++|..++.......+  .....|    ....|+++|+.++..  . .++  .++.+
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e--~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~  337 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI  337 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE--cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEE
Confidence            89999998777655  22   688899988743222221  122222    345799999854432  2 222  45544


Q ss_pred             ECC------CCe-EEEEccCCCCeeEE-EEeCCCCEEEE
Q 004737          691 NMT------ENK-TLTLSAHDKLVSSL-AASTVNGMVAS  721 (732)
Q Consensus       691 Dl~------t~~-~~~~~~h~~~V~sl-a~spdg~~LaS  721 (732)
                      ++.      .++ ...+....-.|..+ .|+.+++.|+.
T Consensus       338 ~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF  376 (465)
T d1xfda1         338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYF  376 (465)
T ss_dssp             EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred             EeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEE
Confidence            332      122 22333334455554 57777765543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.70  E-value=2.4e-05  Score=79.54  Aligned_cols=222  Identities=14%  Similarity=0.112  Sum_probs=151.3

Q ss_pred             EEEEEcCC-CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737          454 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       454 ~~lafSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      .+..|.+. +++..+--..+.|..||.++++... +. ....+.++++.+++.++++ +.+ -|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            35678774 4444444467899999999886542 22 3456889999998876665 454 588999998764222111


Q ss_pred             cC---CcceEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEE
Q 004737          533 GH---STTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILD  605 (732)
Q Consensus       533 ~h---~~~V~sl~fspdg~~llaSgs~---Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwD  605 (732)
                      ..   ...++.+.+.|+|..++.+...   .+.-.+|.+..++.............++|+++++.++++.. .+.|+.|+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence            11   2357889999998655543322   23456677777776666655566788999999998777665 67899998


Q ss_pred             CCCC--------eEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecCCCceEEEEEe-CCC
Q 004737          606 VETQ--------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTF  675 (732)
Q Consensus       606 l~t~--------~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fs-pdg  675 (732)
                      +...        .....+.+..+....++++.+|.+.++.. .+.|.+||.. +   +.+..+......+++|+|- ++.
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G---~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G---NHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C---CEEEEEECSCSBEEEEEEESTTS
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C---cEeeEecCCCCceEEEEEeCCCC
Confidence            7521        12233344556688999999999887776 7789999964 4   5666666656679999996 677


Q ss_pred             CEEEEEEc
Q 004737          676 PSLLVIGC  683 (732)
Q Consensus       676 ~~L~sgs~  683 (732)
                      +.|++.+.
T Consensus       253 ~~LyvTta  260 (295)
T d2ghsa1         253 SRLLVTSA  260 (295)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEEC
Confidence            77776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.63  E-value=3e-05  Score=78.70  Aligned_cols=218  Identities=9%  Similarity=0.016  Sum_probs=144.3

Q ss_pred             EEEEEcCCCCeEE-EEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEE
Q 004737          496 TDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  574 (732)
Q Consensus       496 ~~l~fspdg~~La-sgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~  574 (732)
                      ....|.+....|+ +--..+.|..||..++..  ..+. ....+.++++.+++ .+++++ .+ .|.++|..+++.....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--~~~~-~~~~~~~i~~~~dg-~l~va~-~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDS-KQLIAS-DD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETT-EEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeE--EEEE-CCCCcEEEEEecCC-CEEEEE-eC-ccEEeecccceeeEEe
Confidence            3566877544444 434678899999987653  2222 34578899998886 455443 34 5999999988765544


Q ss_pred             eccC-----CeeEEEEeCCCCEEEEEEcC----CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEE
Q 004737          575 KCQS-----GATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR  643 (732)
Q Consensus       575 ~~~~-----~i~~v~~sp~g~~ll~~s~d----g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~  643 (732)
                      ....     .+..+.+.++|..+++...+    +.-.+|.+..++...... .-...+.++|+++++.++.+.  .+.|.
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceee
Confidence            3221     26788999998876665432    345666666666554443 234568899999999777666  67899


Q ss_pred             EEECCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEe-CCC
Q 004737          644 VWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS-TVN  716 (732)
Q Consensus       644 IWDl~t~~~-----~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~s-pdg  716 (732)
                      .|++.....     ................+++..+|.+.++.-..+.|..||- +++.+ .+.-....+++++|- ++.
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCC
Confidence            998753211     1222333344566889999999997776667789999995 56665 444444679999996 565


Q ss_pred             CEEEE
Q 004737          717 GMVAS  721 (732)
Q Consensus       717 ~~LaS  721 (732)
                      +.|+.
T Consensus       253 ~~Lyv  257 (295)
T d2ghsa1         253 SRLLV  257 (295)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            55543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.62  E-value=2.8e-06  Score=84.05  Aligned_cols=231  Identities=11%  Similarity=0.063  Sum_probs=133.0

Q ss_pred             EEcCC--CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeC-C-----CeEEEEecCCCCcee
Q 004737          457 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENPDYSL  528 (732)
Q Consensus       457 afSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~-D-----g~I~IWDl~s~~~~~  528 (732)
                      ..+||  |+.+|..+ ++.|.+.|+.+++.. .+..+.+.+...+|+|||+.||.... +     ..|.+++..++..  
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence            46788  99888765 567889999988765 55667778899999999999987643 2     2366777766542  


Q ss_pred             EEeec-------CCcceEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEE
Q 004737          529 RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA  596 (732)
Q Consensus       529 ~~l~~-------h~~~V~sl~fspdg~~llaSgs~D-----g~I~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s  596 (732)
                      +.+..       .......+.|+|+++.++++...+     ..+..++...+......  ..... ..+.+++..++...
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~  157 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPAT-HILFADGRRVIGRN  157 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCS-EEEEETTEEEEEES
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccc-eeeecCCCeEEEee
Confidence            22221       223457789999998777654322     23455565544433221  12222 33444444444332


Q ss_pred             c-CC-----------eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC--eEEEEECCCCCCceeEEEeecC
Q 004737          597 I-EN-----------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCT  662 (732)
Q Consensus       597 ~-dg-----------~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg--~I~IWDl~t~~~~~~i~~~~~~  662 (732)
                      . +.           ...++........... ..........++++..++....++  .|.++|+.+... +   .+...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~---~lt~~  232 (281)
T d1k32a2         158 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL-R---KHTSF  232 (281)
T ss_dssp             CSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC-E---ECCCC
T ss_pred             ccccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccccceecccccccceEEEeCCCCce-E---EeecC
Confidence            2 11           1222222222222222 233445556666653222222233  688888877532 1   22211


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEc
Q 004737          663 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS  701 (732)
Q Consensus       663 ~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~~~~  701 (732)
                       .......|+|||+.|+.. .++.|+++|+.+++...+.
T Consensus       233 -~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         233 -TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             -CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred             -CCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence             222334689999987764 4678999999999877553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=1.7e-05  Score=78.06  Aligned_cols=220  Identities=9%  Similarity=0.058  Sum_probs=129.4

Q ss_pred             EEcCC--CCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeee
Q 004737          499 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA  571 (732)
Q Consensus       499 ~fspd--g~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i  571 (732)
                      ..+||  |+.+|..+ ++.|.+.|+..+.  .+.+..+.+.+....|+|||+.++++...++     .|.+++...++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  99888775 5678888998765  4566767788899999999998887765443     4788888877765


Q ss_pred             eEEecc-------CCeeEEEEeCCCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Q 004737          572 GVFKCQ-------SGATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  638 (732)
Q Consensus       572 ~~~~~~-------~~i~~v~~sp~g~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs  638 (732)
                      ......       .......|+|+++.++.....      ..+..++...+......   ......+.+.+.+.+++...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  158 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNT  158 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeec
Confidence            432211       234678899999988876542      24566666665543322   22223333333333443332


Q ss_pred             -CC-----------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--eEEEEECCCCeEEEEccC
Q 004737          639 -DE-----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE--TLELWNMTENKTLTLSAH  703 (732)
Q Consensus       639 -Dg-----------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg--~I~IwDl~t~~~~~~~~h  703 (732)
                       +.           ...++.....    ................++++.  ++... .++  .|+++|+.+++...+..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~~~lt~~  232 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSG----AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDLRKHTSF  232 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETT----EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred             cccceeeeeccCCcceeeeecccc----ceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCCceEEeecC
Confidence             11           1111111111    111122223334445555553  33333 333  788999988877655443


Q ss_pred             CCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          704 DKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       704 ~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      .. .....|+|||+.|+.. .++.|+++|
T Consensus       233 ~~-~~~~~~SpDG~~I~f~-~~~~l~~~d  259 (281)
T d1k32a2         233 TD-YYPRHLNTDGRRILFS-KGGSIYIFN  259 (281)
T ss_dssp             CS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             CC-cccccCcCCCCEEEEE-eCCEEEEEE
Confidence            32 2334689999987764 467787765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.28  E-value=8.9e-05  Score=77.83  Aligned_cols=258  Identities=9%  Similarity=0.004  Sum_probs=157.1

Q ss_pred             EEEEECCCcEEEEEcCCCeEEEEeccC---------------------------------------CCce--EEEEEcC-
Q 004737          465 LATGGHDKKAVLWCTESFTVKSTLEEH---------------------------------------TQWI--TDVRFSP-  502 (732)
Q Consensus       465 Lasgs~Dg~I~VWd~~t~~~~~~l~~h---------------------------------------~~~V--~~l~fsp-  502 (732)
                      +.+|+..|.|+|+-+.+++.+..+...                                       .+..  -.+.|.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            566778888888888877776664210                                       0011  1344433 


Q ss_pred             --CCCeEEEEe-CCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCC-cEEEEEeCC------------------CcE
Q 004737          503 --SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNN------------------SEI  560 (732)
Q Consensus       503 --dg~~Lasgs-~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~-~llaSgs~D------------------g~I  560 (732)
                        ||++|++.. .+..|.+.|+++.+............+..+...++.+ .+++..+.+                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              688877765 5789999999986632222222344556666654332 233333321                  346


Q ss_pred             EEEECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCC---------------eEEEEE--------------------
Q 004737          561 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------YISILD--------------------  605 (732)
Q Consensus       561 ~iWDl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg---------------~I~IwD--------------------  605 (732)
                      .++|..+.+....+........+.++++|+++++.+.+.               .+.+++                    
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            789999999998888888888999999999999887531               233343                    


Q ss_pred             ---CCCC---eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCC--------CCceeEEEeecCCCceEEE
Q 004737          606 ---VETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG--------SKGECIHELSCTGNKFHSC  669 (732)
Q Consensus       606 ---l~t~---~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~--------~~~~~i~~~~~~~~~I~sl  669 (732)
                         .++.   ..++.+. -......+.++|||+|+++++  +.++.|+|++.-        ....++..-...+-.-...
T Consensus       256 VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence               3321   1111111 112345789999999999988  889999999632        1123333333344555677


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEECCCC----------eEE-EEccCCCCee-----EEEEeCCCCEEEEEE
Q 004737          670 VFHPTFPSLLVIGCYETLELWNMTEN----------KTL-TLSAHDKLVS-----SLAASTVNGMVASAS  723 (732)
Q Consensus       670 ~fspdg~~L~sgs~dg~I~IwDl~t~----------~~~-~~~~h~~~V~-----sla~spdg~~LaSgs  723 (732)
                      +|+..|.-..+.--|..|.-|++...          ..+ .+.-|-..=.     .-...|+|++|++..
T Consensus       335 ~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         335 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            89888864445557889999998422          233 3333322111     112357888888775

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=0.0013  Score=65.10  Aligned_cols=245  Identities=8%  Similarity=-0.015  Sum_probs=155.4

Q ss_pred             CEEEEEECCCcEEEEEcCCCe-----EEEEeccCCCceEEEEEcCCCCeEEEE-eCCCeEEEEecCCCCceeEEeecCCc
Q 004737          463 KLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHST  536 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~~~V~~l~fspdg~~Lasg-s~Dg~I~IWDl~s~~~~~~~l~~h~~  536 (732)
                      .+|+.+.. +.|+-.+++...     ....+..+...+..|+|.+..+.|+.+ ..++.|+..+++.... .........
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~   79 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG   79 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence            34444332 466666665432     122233344568889998876666655 4567899989876543 333333345


Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEcC---CeEEEEECCCCeEE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR  612 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~d---g~I~IwDl~t~~~i  612 (732)
                      .+..+++...+..+.++-...+.|.+.++....+...+.. -..+..++++|..++++.....   ..|...++......
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            6889999877777777777788999999986654433332 2457899999998988877653   24666677654433


Q ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEE
Q 004737          613 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLEL  689 (732)
Q Consensus       613 ~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~I  689 (732)
                      ......-....+|++++.+..|+.+.  .+.|...|+...   .....+.... ....+++.  +.+|+... ..+.|..
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEE
Confidence            33333445678999998888777666  678999998764   2222223322 33567665  45566665 4568999


Q ss_pred             EECCCCeEEEEc--cCCCCeeEEEEeCC
Q 004737          690 WNMTENKTLTLS--AHDKLVSSLAASTV  715 (732)
Q Consensus       690 wDl~t~~~~~~~--~h~~~V~sla~spd  715 (732)
                      .|..+++.....  ........|++.++
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         234 MDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EECCCCccceEECCCCCCCcceEEEeCC
Confidence            999888876333  23344556665543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=0.0056  Score=60.39  Aligned_cols=230  Identities=9%  Similarity=-0.026  Sum_probs=148.1

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEe-CCCeEEEEecCCCCc--ee-EEeecCCcceE
Q 004737          464 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY--SL-RTFTGHSTTVM  539 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs-~Dg~I~IWDl~s~~~--~~-~~l~~h~~~V~  539 (732)
                      +|+.+. ...|+-.++++......+. ....+..++|.+..+.|+-.. .++.|...+++....  .. ..+......+.
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            344433 3468888888765544444 445678999998777766654 466777777653221  11 22233335577


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEec-cCCeeEEEEeCCCCEEEEEEc--CCeEEEEECCCCeEEEEEc
Q 004737          540 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ  616 (732)
Q Consensus       540 sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~-~~~i~~v~~sp~g~~ll~~s~--dg~I~IwDl~t~~~i~~l~  616 (732)
                      .+++.+.+..+.++-...+.|.+.++........+.. ......++++|..++++.+..  .+.|...++..........
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            8898887788888877788999999987665444443 345888999998888887764  3568888887655444444


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 004737          617 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT  693 (732)
Q Consensus       617 ~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~  693 (732)
                      ..-....++++++.+..|+.+.  .+.|...++..... ..+............+++.  +.+|+.+. .++.|+..+..
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence            4446778999999888777776  67999999866432 2232222222345566666  34555554 45678888877


Q ss_pred             CCeEE
Q 004737          694 ENKTL  698 (732)
Q Consensus       694 t~~~~  698 (732)
                      ++...
T Consensus       238 ~g~~~  242 (266)
T d1ijqa1         238 TGSDV  242 (266)
T ss_dssp             TCCCC
T ss_pred             CCcce
Confidence            76544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.10  E-value=0.0005  Score=71.02  Aligned_cols=272  Identities=9%  Similarity=0.041  Sum_probs=149.0

Q ss_pred             CeEEEEEcCCCCEEEEEECCC-----------cEEEEEcCCCeEE--EEe-ccCCCceEEEEEcCCCCeEEEEeCC-CeE
Q 004737          452 KVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSAD-RTV  516 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg-----------~I~VWd~~t~~~~--~~l-~~h~~~V~~l~fspdg~~Lasgs~D-g~I  516 (732)
                      .+...+...+|+.++.|+.+.           .+.+||..+++-.  ... ..|.......++.+++.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            445556667899988888531           3789999876432  122 2344445567889999999988765 589


Q ss_pred             EEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEEecc-------------
Q 004737          517 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQ-------------  577 (732)
Q Consensus       517 ~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~D------g~I~iWDl~t~~~i~~~~~~-------------  577 (732)
                      .+||..+..............-.+++..+++..++ .++.+      ..+.+||..+.+-...-...             
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v-~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFT-IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEE-ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eEecCccCcccccccccccccccceeeecCCceee-eccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            99999876532211111112234566677765444 55432      36899999877643221100             


Q ss_pred             --CCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcC------CCC--CEEEEEE-eCCCCEEEEEe--CC----
Q 004737          578 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------HKN--QVHSVCW-NTSGEYLASVS--DE----  640 (732)
Q Consensus       578 --~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~------h~~--~V~sla~-spdg~~Lasgs--Dg----  640 (732)
                        .....+...+++..++.+...+.+.++|..+.........      +..  .-.++.+ ..++++++.++  ++    
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~  259 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  259 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence              0111123334556666666677778888877654332110      010  1122323 23566666654  21    


Q ss_pred             ---eEEEEECCCCCCceeEEE-ee--cCCCceEEEEEeCCCCEEEEEEcCC-----------eEEEEECCCCeEEEEccC
Q 004737          641 ---LVRVWSIGSGSKGECIHE-LS--CTGNKFHSCVFHPTFPSLLVIGCYE-----------TLELWNMTENKTLTLSAH  703 (732)
Q Consensus       641 ---~I~IWDl~t~~~~~~i~~-~~--~~~~~I~sl~fspdg~~L~sgs~dg-----------~I~IwDl~t~~~~~~~~h  703 (732)
                         ...++++........... ..  .......+.+..++++.+++++.+.           .+.+||..+.+...+...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~  339 (387)
T d1k3ia3         260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  339 (387)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence               334444433221111111 11  1122234566778999888887531           578999988876544321


Q ss_pred             C--CCe-eEEEEeCCCCEEEEEEC
Q 004737          704 D--KLV-SSLAASTVNGMVASASH  724 (732)
Q Consensus       704 ~--~~V-~sla~spdg~~LaSgs~  724 (732)
                      .  ..- ....+.+||++|+.|+.
T Consensus       340 ~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         340 SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEEECCCCEEEEEeCC
Confidence            1  111 23345789999999883

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=0.0073  Score=59.96  Aligned_cols=247  Identities=10%  Similarity=0.164  Sum_probs=157.1

Q ss_pred             CcEEEEEcCCCeEE-EEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcE
Q 004737          472 KKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  550 (732)
Q Consensus       472 g~I~VWd~~t~~~~-~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~l  550 (732)
                      ..|.|.|+...... +.--.-    -+.-.+|..+.||.=+ ..++.|+|+++.. .++.+. ....|.--.|-.+. .+
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALra-g~~LQiFnletK~-klks~~-~~e~VvfWkWis~~-~L  116 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHT-MTDDVTFWKWISLN-TV  116 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEE-TTEEEEEETTTTE-EEEEEE-CSSCCCEEEESSSS-EE
T ss_pred             ceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEec-CCeEEEEehhHhh-hhceEE-cCCCcEEEEecCCC-EE
Confidence            47888888765432 222111    2334678888777765 5689999999865 355554 34578778887653 33


Q ss_pred             EEEEeCCCcEEEEECCC-CeeeeEEecc-----CCeeEEEEeCCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 004737          551 LCSCDNNSEIRYWSINN-GSCAGVFKCQ-----SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG  617 (732)
Q Consensus       551 laSgs~Dg~I~iWDl~t-~~~i~~~~~~-----~~i~~v~~sp~g~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~  617 (732)
                      .+.+  +..|+-|+++. ..+.+.+..+     ..|.....+++.++++..+-       .|.+.+|..+.+. -..+++
T Consensus       117 ~lVT--~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieG  193 (327)
T d1utca2         117 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  193 (327)
T ss_dssp             EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred             EEEc--CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccc
Confidence            3333  56799999954 3455666533     33777788899998776543       3678899988653 345666


Q ss_pred             CCCCEEEEEEeCCC---CEEEEEe----CCeEEEEECCCCCCc-----eeEEEee----cCCCceEEEEEeCCCCEEEEE
Q 004737          618 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGSKG-----ECIHELS----CTGNKFHSCVFHPTFPSLLVI  681 (732)
Q Consensus       618 h~~~V~sla~spdg---~~Lasgs----Dg~I~IWDl~t~~~~-----~~i~~~~----~~~~~I~sl~fspdg~~L~sg  681 (732)
                      |......+.+.-+.   .+++.+.    .++++|.++......     +....+.    ....--.++.+++....++..
T Consensus       194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            65544444332211   2343333    358999998764221     1111211    123445688999999999999


Q ss_pred             EcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          682 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       682 s~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      +..|.|++||++++.++ .-.-....|...+-+.+..=+++...+|.|.
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            99999999999999988 3334455666555555555566666788664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=0.0043  Score=61.21  Aligned_cols=219  Identities=7%  Similarity=-0.011  Sum_probs=140.3

Q ss_pred             CeEEEEeCCCeEEEEecCCCCce----eEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEecc-CC
Q 004737          505 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SG  579 (732)
Q Consensus       505 ~~Lasgs~Dg~I~IWDl~s~~~~----~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~-~~  579 (732)
                      .+|+.+. .+.|+-.+++.....    ...+..+...+..++|++.++.++.+-..++.|+..++........+... ..
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            3444443 346777777643311    12334445568889999887788877777888999999866555444332 46


Q ss_pred             eeEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCe--EEEEECCCCCCce
Q 004737          580 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGE  654 (732)
Q Consensus       580 i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~--I~IWDl~t~~~~~  654 (732)
                      +..+++..-++.|+.+.. .+.|.+.++....+...+......+..++++|...+|+...  .+.  |..-++....   
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~---  157 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN---  157 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC---
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC---
Confidence            788999987788877665 57999999987654444444446789999999887777655  223  4444554332   


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCeEEEEccCCCCeeEEEEeCCCCEEEEEE-CCCeEE
Q 004737          655 CIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVK  729 (732)
Q Consensus       655 ~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg~I~IwDl~t~~~~~~~~h~~~V~sla~spdg~~LaSgs-~DG~I~  729 (732)
                      ........-.....+++++.+..|+.+. ..+.|...|+.......+........+|++.  +.+|+-.. ..+.|.
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~  232 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVI  232 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEE
Confidence            1112222334568899999888887775 4568999999876655333333345678876  44555444 445554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.012  Score=57.82  Aligned_cols=217  Identities=9%  Similarity=0.026  Sum_probs=137.8

Q ss_pred             eEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---ee-EEe-ccCCe
Q 004737          506 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AG-VFK-CQSGA  580 (732)
Q Consensus       506 ~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~---i~-~~~-~~~~i  580 (732)
                      +|+.+. ...|+-.++++...  ..+......+..++|++..+.++.+-..++.|+..++.....   .. .+. ....+
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            344443 33588889987553  333345567789999998777777666677788777753221   11 121 12446


Q ss_pred             eEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCeEEEEECCCCCCceeE
Q 004737          581 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI  656 (732)
Q Consensus       581 ~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs---Dg~I~IWDl~t~~~~~~i  656 (732)
                      ..+++.+.++.|+.+.. .+.|.++++........+.........++++|...+|+...   .+.|...++...   ...
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~  156 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY  156 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---cee
Confidence            78999988888887765 47899999988766666665667789999999766666554   346777777553   222


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCeEEEE---ccCCCCeeEEEEeCCCCEEEEEE-CCCeEEE
Q 004737          657 HELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL---SAHDKLVSSLAASTVNGMVASAS-HDKCVKI  730 (732)
Q Consensus       657 ~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~~~~~---~~h~~~V~sla~spdg~~LaSgs-~DG~I~I  730 (732)
                      ......-.....+++++.+..|+.+.. .+.|...++.......+   ........+|++.  +.+|+-+. .++.|+.
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFS  233 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEE
Confidence            222233456789999998888887754 46899999876543322   2223456678876  33444443 5556543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.87  E-value=0.0069  Score=63.92  Aligned_cols=238  Identities=8%  Similarity=0.029  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCCEEEEEE-----CCCcEEEEEcCCCeEEEE-eccCCCceEEEEEcCCCCeEEEEeCC-------------
Q 004737          453 VESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSAD-------------  513 (732)
Q Consensus       453 V~~lafSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~-l~~h~~~V~~l~fspdg~~Lasgs~D-------------  513 (732)
                      +..+++|||++++|.+-     ....|+++|+.+++.+.. +..  .....++|.+|++.|+....|             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            45568899999987543     224799999999987642 321  112568899999988765433             


Q ss_pred             ---CeEEEEecCCCCce-eEEeecCC--cceEEEEEcCCCCcEEEEEeC--CCc--EEEEECCCCe--------eeeEEe
Q 004737          514 ---RTVRVWDTENPDYS-LRTFTGHS--TTVMSLDFHPSKEDLLCSCDN--NSE--IRYWSINNGS--------CAGVFK  575 (732)
Q Consensus       514 ---g~I~IWDl~s~~~~-~~~l~~h~--~~V~sl~fspdg~~llaSgs~--Dg~--I~iWDl~t~~--------~i~~~~  575 (732)
                         ..|..|.+.+.... ...+....  ..+..+..+.++..+++....  +..  +.+.|+....        ....+.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence               25788888765432 23333333  345667788888887765432  333  4444543221        111121


Q ss_pred             ccCCeeEEEEeCCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEE
Q 004737          576 CQSGATQMRFQPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRV  644 (732)
Q Consensus       576 ~~~~i~~v~~sp~g~~ll~~s~----dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~I  644 (732)
                      ........... .+..++..+.    ++.|...++....   ....+..+...+..-.+...+.+|+...  ++  .|++
T Consensus       285 ~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v  363 (430)
T d1qfma1         285 NFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (430)
T ss_dssp             SSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             ccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence            11112222222 3344444433    3577777776542   1223333455555444444555565544  55  7899


Q ss_pred             EECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCe
Q 004737          645 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK  696 (732)
Q Consensus       645 WDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~d----g~I~IwDl~t~~  696 (732)
                      +++.++.   .........+.+..+...++...+...-.+    .+++.||+.+++
T Consensus       364 ~~~~~~~---~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         364 HDLATGA---LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EETTTCC---EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EECCCCc---EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            9998763   223333334455555555666555544332    489999998875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.68  E-value=0.0025  Score=70.34  Aligned_cols=187  Identities=8%  Similarity=0.113  Sum_probs=110.4

Q ss_pred             CCCEEEEEECCCcEEEEEc-CCCeEEEEeccCCC----ce-------EEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee
Q 004737          461 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----WI-------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  528 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~~h~~----~V-------~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~  528 (732)
                      +|.++++.+.++.|...|. ++|+.+-++.....    .+       ..+++.  +..|+.++.|+.+.-.|.++++...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            5544444344688988997 47998877642110    00       123343  3467788899999999999987533


Q ss_pred             EEeec--C-CcceEEE-EEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEEeccCC--------------------
Q 004737          529 RTFTG--H-STTVMSL-DFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG--------------------  579 (732)
Q Consensus       529 ~~l~~--h-~~~V~sl-~fspdg~~llaSgs-----~Dg~I~iWDl~t~~~i~~~~~~~~--------------------  579 (732)
                      ..-..  + ...++.. .+. + ..+++.++     .+|.|+-+|+++|+.+..+.....                    
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~-~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  217 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             cccccccccccceeecCeEe-C-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            32111  1 1111111 111 2 23443322     367899999999999887653210                    


Q ss_pred             ------------------e-eEEEEeCCCCEEEEEEc----------------CCeEEEEECCCCeEEEEEcCCCCC---
Q 004737          580 ------------------A-TQMRFQPRLGRILAAAI----------------ENYISILDVETQVCRLKLQGHKNQ---  621 (732)
Q Consensus       580 ------------------i-~~v~~sp~g~~ll~~s~----------------dg~I~IwDl~t~~~i~~l~~h~~~---  621 (732)
                                        + ...++.+..+.++.+..                ...|...|+++++.+..+......   
T Consensus       218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd  297 (571)
T d2ad6a1         218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence                              1 23577777777776655                246888999999988877643221   


Q ss_pred             ------EEEEEEeCCCC---EEEEEe-CCeEEEEECCCCC
Q 004737          622 ------VHSVCWNTSGE---YLASVS-DELVRVWSIGSGS  651 (732)
Q Consensus       622 ------V~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~  651 (732)
                            .....+..+++   .++... +|.+.++|..+++
T Consensus       298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence                  11222223443   344454 8899999988874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.59  E-value=0.0029  Score=69.61  Aligned_cols=261  Identities=12%  Similarity=0.062  Sum_probs=153.2

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEeccCCC----------ce-EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEee
Q 004737          464 LLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----------~V-~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      .|++++.++.|.-.|.++|+.+-++.....          .+ ..++.  .+..++.+..|+.|.-.|..+++.......
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~  145 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence            566677789999999999999877632110          00 11111  145688888999999999998875333221


Q ss_pred             cCCcc---eE-EEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccC------------------------
Q 004737          533 GHSTT---VM-SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS------------------------  578 (732)
Q Consensus       533 ~h~~~---V~-sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~------------------------  578 (732)
                      .....   ++ ...+. + . .++.+.      ..|.|+-+|.++++.+..+....                        
T Consensus       146 ~~~~~~~~~~~~p~v~-~-~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (560)
T d1kv9a2         146 TDPAKPYSITGAPRVV-K-G-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (560)
T ss_dssp             SCTTSSCBCCSCCEEE-T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCcccceeeeeeeeee-c-C-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccc
Confidence            11111   10 01111 1 2 232332      23679999999999998775310                        


Q ss_pred             -------C-eeEEEEeCCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEEcCCCCCE---------
Q 004737          579 -------G-ATQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKNQV---------  622 (732)
Q Consensus       579 -------~-i~~v~~sp~g~~ll~~s~-------------------dg~I~IwDl~t~~~i~~l~~h~~~V---------  622 (732)
                             . -..+.+.+..+.++.+..                   ...|.-.|+++++.+..+......+         
T Consensus       223 ~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~  302 (560)
T d1kv9a2         223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI  302 (560)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             ccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccccccccee
Confidence                   0 123677787777766542                   2357888999998887665422211         


Q ss_pred             EEEEEeCCCC---EEEEEe-CCeEEEEECCCCCCceeEEEeecCC-----------------------------------
Q 004737          623 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------------------------------  663 (732)
Q Consensus       623 ~sla~spdg~---~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~~-----------------------------------  663 (732)
                      .-+.+..+++   .++.+. +|.+.++|..+++   .+.......                                   
T Consensus       303 ~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~---~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~G  379 (560)
T d1kv9a2         303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG  379 (560)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred             eeeeeecCCceeeeeeecCccceEEEEecCCCc---ccccccccccccccccChhhccccccccccccccceeeeecccc
Confidence            1122222332   444455 8899999998884   332211100                                   


Q ss_pred             -CceEEEEEeCCCCEEEEEEcC------------------------------------CeEEEEECCCCeEEEEccCCCC
Q 004737          664 -NKFHSCVFHPTFPSLLVIGCY------------------------------------ETLELWNMTENKTLTLSAHDKL  706 (732)
Q Consensus       664 -~~I~sl~fspdg~~L~sgs~d------------------------------------g~I~IwDl~t~~~~~~~~h~~~  706 (732)
                       ......+++|+...+++...+                                    +.|.-||+.+++.+-.......
T Consensus       380 g~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~  459 (560)
T d1kv9a2         380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH  459 (560)
T ss_dssp             SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS
T ss_pred             ccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCC
Confidence             001245677777766654422                                    4678899999998832222223


Q ss_pred             eeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          707 VSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       707 V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ..+-.+.-.+.++++++.||.++.+|
T Consensus       460 ~~gg~l~TagglVF~G~~dg~l~A~D  485 (560)
T d1kv9a2         460 WNGGTLSTAGNLVFQGTAAGQMHAYS  485 (560)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCceeEECCCEEEEECCCCcEEEEE
Confidence            32223344577888899999998775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.0094  Score=62.16  Aligned_cols=191  Identities=15%  Similarity=0.170  Sum_probs=123.8

Q ss_pred             EEEEcC---CCCcEEEEEeCCCcEEEEECCCCeeeeEEec--cCCeeEEEEe--CCCCEEEEEEcCC-------------
Q 004737          540 SLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQ--PRLGRILAAAIEN-------------  599 (732)
Q Consensus       540 sl~fsp---dg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~--~~~i~~v~~s--p~g~~ll~~s~dg-------------  599 (732)
                      .+.+..   ||+++++.-..+..|.+.|+++.++...+..  ...+..++..  |...++++.+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            445543   6778887877899999999999999776654  3456666664  4556777766532             


Q ss_pred             -----eEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe-CC---------------eE----------------
Q 004737          600 -----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---------------LV----------------  642 (732)
Q Consensus       600 -----~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs-Dg---------------~I----------------  642 (732)
                           .+.++|..+.+....+.. ......+.++++|+++++.+ +.               .+                
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 367899999888777653 34567899999999998876 21               23                


Q ss_pred             -------EEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCe------------EEEEcc
Q 004737          643 -------RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENK------------TLTLSA  702 (732)
Q Consensus       643 -------~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~-dg~I~IwDl~t~~------------~~~~~~  702 (732)
                             .+.|.+.......+..+. .....+.+.++|||+++++++. +.++.|+|++.-.            ......
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                   333333211111121121 1233567899999999988876 4599999986321            111122


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          703 HDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       703 h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      ..-.....+|+..|....|.--|..|.-|+
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEe
Confidence            334456778888775444555788888885

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.50  E-value=0.011  Score=65.21  Aligned_cols=188  Identities=12%  Similarity=0.100  Sum_probs=112.5

Q ss_pred             CCCEEEEEECCCcEEEEEc-CCCeEEEEeccCCC----------ce-EEEEEcCC----CCeEEEEeCCCeEEEEecCCC
Q 004737          461 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----------WI-TDVRFSPS----LSRLATSSADRTVRVWDTENP  524 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~-~t~~~~~~l~~h~~----------~V-~~l~fspd----g~~Lasgs~Dg~I~IWDl~s~  524 (732)
                      +|.++++.+.++.|...|. ++|+.+-.+.....          .+ ..+++.++    ..+|+.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            5544455555677888886 57888877642110          11 23455443    346888999999999999998


Q ss_pred             CceeEEeecCC---cceE-EEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccC----------------
Q 004737          525 DYSLRTFTGHS---TTVM-SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS----------------  578 (732)
Q Consensus       525 ~~~~~~l~~h~---~~V~-sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~----------------  578 (732)
                      +.....-.+..   ..++ .-.+.   +..++.+.      ..|.|+-+|+++|+.+..+....                
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~---~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  218 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ceeccccccccccccccccCCcEE---CCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence            86443322111   1111 11122   12333443      24899999999999998765211                


Q ss_pred             -----------------------CeeEEEEeCCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcC--
Q 004737          579 -----------------------GATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--  617 (732)
Q Consensus       579 -----------------------~i~~v~~sp~g~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~--  617 (732)
                                             .-..+.+.+..+.++.+..+                ..|...|+++++.+..+..  
T Consensus       219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~  298 (596)
T d1w6sa_         219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (596)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence                                   01245677777777776543                3488899999998887654  


Q ss_pred             CCC-------CEEEEEE-eCCCC---EEEEEe-CCeEEEEECCCCC
Q 004737          618 HKN-------QVHSVCW-NTSGE---YLASVS-DELVRVWSIGSGS  651 (732)
Q Consensus       618 h~~-------~V~sla~-spdg~---~Lasgs-Dg~I~IWDl~t~~  651 (732)
                      |..       .+..+.. ..+|+   .++... +|.+.++|..+++
T Consensus       299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence            211       1122221 23443   455555 8899999998874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.50  E-value=0.059  Score=53.29  Aligned_cols=225  Identities=13%  Similarity=0.192  Sum_probs=147.4

Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecC
Q 004737          455 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  534 (732)
Q Consensus       455 ~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h  534 (732)
                      +.-.+|..+.||.-+ ..++.|||+++.+.++.+.-. ..|.--.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            456678888888776 468999999999988887644 46767778654 4566553 5689999997666677777766


Q ss_pred             C----cceEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccCCeeEE-EEe----CCCCEEEEEE---
Q 004737          535 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQ----PRLGRILAAA---  596 (732)
Q Consensus       535 ~----~~V~sl~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~~i~~v-~~s----p~g~~ll~~s---  596 (732)
                      .    ..|..-..+++.++++++|=      -.|.+.+|..+.+. ...++.  ...++ .+.    +....+++-.   
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~  219 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG--HAASFAQFKMEGNAEESTLFCFAVRG  219 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC--SEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccc--eeeeeEEEEcCCCCCCceEEEEEECC
Confidence            5    35777777888888877661      23678889887543 223332  11111 111    1111222222   


Q ss_pred             -cCCeEEEEECCCC--------eEEEEEc----CCCCCEEEEEEeCCCCEEEEEe-CCeEEEEECCCCCCceeEEEeecC
Q 004737          597 -IENYISILDVETQ--------VCRLKLQ----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT  662 (732)
Q Consensus       597 -~dg~I~IwDl~t~--------~~i~~l~----~h~~~V~sla~spdg~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~  662 (732)
                       ..+.++|.++...        +....+.    ...+-..++..++.-.+++... -|.|++||+.++   .++..-+..
T Consensus       220 ~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs  296 (327)
T d1utca2         220 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS  296 (327)
T ss_dssp             TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred             CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecC
Confidence             1368899988642        1111221    1234556788888877787777 899999999998   788777777


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEE
Q 004737          663 GNKFHSCVFHPTFPSLLVIGCYETLEL  689 (732)
Q Consensus       663 ~~~I~sl~fspdg~~L~sgs~dg~I~I  689 (732)
                      ...|...+-+.+..-+++...+|.|..
T Consensus       297 ~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         297 GETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             CCceEEeccCCCCceEEEECCCCeEEE
Confidence            777776666666556777777776543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=0.013  Score=64.32  Aligned_cols=254  Identities=9%  Similarity=0.010  Sum_probs=140.6

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCC----CceEEEEEcCCCCeEEEEe------CCCeEEEEecCCCCceeEEee
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~V~~l~fspdg~~Lasgs------~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      ..|+.++.|+.|.-.|.++++.+.......    ..++.--.-.++ .++.+.      .+|.|+-+|+.+++...+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            467778889999999999999876653211    111111111133 344443      378899999999885443221


Q ss_pred             cC------------------------------------Ccce-EEEEEcCCCCcEEEEEeC----------------CCc
Q 004737          533 GH------------------------------------STTV-MSLDFHPSKEDLLCSCDN----------------NSE  559 (732)
Q Consensus       533 ~h------------------------------------~~~V-~sl~fspdg~~llaSgs~----------------Dg~  559 (732)
                      ..                                    ...+ ...++.+.... ++.+..                ...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~-~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNL-FYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTE-EEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCe-eeeecccccCccccccccccccccc
Confidence            10                                    0112 22455555433 333322                245


Q ss_pred             EEEEECCCCeeeeEEecc----------CCeeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-------
Q 004737          560 IRYWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-------  619 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~----------~~i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-------  619 (732)
                      |...|+++++.+..+...          .......+..+++   .++.++.+|.++++|.++++.+...+...       
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            788899999988777632          1122223333443   35567778999999999998875432110       


Q ss_pred             ------CC---------------E-----------EEEEEeCCCCEEEEEe-C---------------------------
Q 004737          620 ------NQ---------------V-----------HSVCWNTSGEYLASVS-D---------------------------  639 (732)
Q Consensus       620 ------~~---------------V-----------~sla~spdg~~Lasgs-D---------------------------  639 (732)
                            .+               .           ...+++|+..+++... +                           
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence                  00               0           1256677766665544 2                           


Q ss_pred             ----------CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEc-cCCCCe
Q 004737          640 ----------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLV  707 (732)
Q Consensus       640 ----------g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~-~h~~~V  707 (732)
                                |.|.-+|+.+++   .+-..... .+..+-.++-.+..+++++.|+.++.+|.++|+.+ .+. .....-
T Consensus       434 ~~~~~~~~~~G~l~AiD~~TG~---~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a  509 (571)
T d2ad6a1         434 GPNGPTKKEMGQIRAFDLTTGK---AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG  509 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTCC---EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             ccCCcccCCcccEEEeccCCCc---eeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee
Confidence                      234555555552   22221111 11111112234567888999999999999999999 332 222222


Q ss_pred             eEEEEeCCCC-EEEEE
Q 004737          708 SSLAASTVNG-MVASA  722 (732)
Q Consensus       708 ~sla~spdg~-~LaSg  722 (732)
                      .-+.|..||+ ||++.
T Consensus       510 ~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         510 SPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             CCEEEEETTEEEEEEE
T ss_pred             cceEEEECCEEEEEEE
Confidence            2355666786 55443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.39  E-value=0.013  Score=64.35  Aligned_cols=263  Identities=12%  Similarity=0.088  Sum_probs=151.1

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCC----------Cce-EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  529 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----------~~V-~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~  529 (732)
                      +| .|++++.++.|.-+|.++|+.+-.+....          ..+ ..+.+.  ...++.++.|+.+.-.|..+++....
T Consensus        77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence            45 56667788999999999999997764211          011 112232  33577778899999999998875433


Q ss_pred             Eeec-CC-cceE--E-EEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEEeccC--------------------
Q 004737          530 TFTG-HS-TTVM--S-LDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS--------------------  578 (732)
Q Consensus       530 ~l~~-h~-~~V~--s-l~fspdg~~llaSgs------~Dg~I~iWDl~t~~~i~~~~~~~--------------------  578 (732)
                      .-.. +. ..+.  . ..+. + ..++ .+.      ..|.|+.+|.++|+.+..+....                    
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~-~-~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~  230 (573)
T d1kb0a2         154 QNTFEGQKGSLTITGAPRVF-K-GKVI-IGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD  230 (573)
T ss_dssp             EETTTTCCSSCBCCSCCEEE-T-TEEE-ECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred             ccCccCCcceEEeecceEEE-e-ccEE-EeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccC
Confidence            2211 11 1111  0 1111 1 2333 432      24689999999999987764211                    


Q ss_pred             ------------Ce-eEEEEeCCCCEEEEEEc-------------------CCeEEEEECCCCeEEEEEcCCCC------
Q 004737          579 ------------GA-TQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKN------  620 (732)
Q Consensus       579 ------------~i-~~v~~sp~g~~ll~~s~-------------------dg~I~IwDl~t~~~i~~l~~h~~------  620 (732)
                                  .+ ....+.++.+.++....                   ...|...|+++++....+.....      
T Consensus       231 ~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d  310 (573)
T d1kb0a2         231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT  310 (573)
T ss_dssp             GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccc
Confidence                        01 23567777777765442                   12577889999988776653211      


Q ss_pred             ---CEEEEEEeCCC---CEEEEEe-CCeEEEEECCCCCCceeEEEeecC-------------------------------
Q 004737          621 ---QVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------------------------  662 (732)
Q Consensus       621 ---~V~sla~spdg---~~Lasgs-Dg~I~IWDl~t~~~~~~i~~~~~~-------------------------------  662 (732)
                         +........++   .+++.+. +|.+.+||..+++.   +......                               
T Consensus       311 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  387 (573)
T d1kb0a2         311 STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF---ISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP  387 (573)
T ss_dssp             CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE---EEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred             ccceeeecceecCCCceeeeeeccccceeEEeccccccc---cccccccccccccccccccceeeeeeccccccceEEee
Confidence               12222222333   2444455 88999999988843   2221110                               


Q ss_pred             ----CCceEEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCC
Q 004737          663 ----GNKFHSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTEN  695 (732)
Q Consensus       663 ----~~~I~sl~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~t~  695 (732)
                          ......++++|+...+++...+                                           +.|.-||+.++
T Consensus       388 g~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tG  467 (573)
T d1kb0a2         388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ  467 (573)
T ss_dssp             CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred             cccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCC
Confidence                0011234677777666654332                                           24777888888


Q ss_pred             eEEEEccCCCCeeEEEEeCCCCEEEEEECCCeEEEeC
Q 004737          696 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  732 (732)
Q Consensus       696 ~~~~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IWD  732 (732)
                      +.+-...+..+...=..+-.+.+|++|+.||.++.||
T Consensus       468 k~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~D  504 (573)
T d1kb0a2         468 KAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (573)
T ss_dssp             EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             ceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEE
Confidence            8772222222222222334678898999999999876

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.28  E-value=0.079  Score=55.35  Aligned_cols=224  Identities=8%  Similarity=0.009  Sum_probs=124.4

Q ss_pred             CCCceEEEEEcCCCCeEEEEe-CC----CeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeC---------
Q 004737          491 HTQWITDVRFSPSLSRLATSS-AD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN---------  556 (732)
Q Consensus       491 h~~~V~~l~fspdg~~Lasgs-~D----g~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~---------  556 (732)
                      +.-.+..++++||++++|.+- .+    ..|+++|+.+++.....+..  .....++|.+++..++++.-.         
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            333455678899999988543 23    37999999998753333332  223578999998888876532         


Q ss_pred             ------CCcEEEEECCCCeee--eEEeccC---CeeEEEEeCCCCEEEEEEcC---C--eEEEEECCCCe--------EE
Q 004737          557 ------NSEIRYWSINNGSCA--GVFKCQS---GATQMRFQPRLGRILAAAIE---N--YISILDVETQV--------CR  612 (732)
Q Consensus       557 ------Dg~I~iWDl~t~~~i--~~~~~~~---~i~~v~~sp~g~~ll~~s~d---g--~I~IwDl~t~~--------~i  612 (732)
                            ...|++|.+.+....  ..+....   -+..+..+.++.+++.....   .  .+.+.|+....        ..
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence                  125888888765332  2333221   24567778898887765442   2  34555654321        12


Q ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEe----CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--
Q 004737          613 LKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE--  685 (732)
Q Consensus       613 ~~l~~h~~~V~sla~spdg~~Lasgs----Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs-~dg--  685 (732)
                      ..+......+..+.. .++.+++...    ++.|...++...........+..+...+..-.+...+.+|++.. .++  
T Consensus       281 ~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         281 KLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             EEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence            223323333333332 2333444333    35777778776543222223333444455545555555666554 454  


Q ss_pred             eEEEEECCCCeEEEEc-cCCCCeeEEEEeCCCC
Q 004737          686 TLELWNMTENKTLTLS-AHDKLVSSLAASTVNG  717 (732)
Q Consensus       686 ~I~IwDl~t~~~~~~~-~h~~~V~sla~spdg~  717 (732)
                      .|++++..+++...+. ...+.|..+...++..
T Consensus       360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence            7899999988876433 3334455444444444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.27  E-value=0.01  Score=60.55  Aligned_cols=253  Identities=9%  Similarity=0.021  Sum_probs=128.6

Q ss_pred             eeeeecCCCceeEEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEEcCCCeEEEEecc-CCCceEEEEEcCCCCe
Q 004737          429 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSR  506 (732)
Q Consensus       429 ~r~wd~~~g~~~~~v~~l~~H~~~V~~lafSpdg~~Lasgs~D-g~I~VWd~~t~~~~~~l~~-h~~~V~~l~fspdg~~  506 (732)
                      ..+||..++.-.........|.......++.+||++++.|+.+ ..+.+||..+..-...-.. ....-..++..+|+++
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v  133 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV  133 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCce
Confidence            4456666553221112223344445567889999999988765 6899999987654422111 1122345677789999


Q ss_pred             EEEEeCC------CeEEEEecCCCCceeEE--------eecCCc-----ceEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 004737          507 LATSSAD------RTVRVWDTENPDYSLRT--------FTGHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  567 (732)
Q Consensus       507 Lasgs~D------g~I~IWDl~s~~~~~~~--------l~~h~~-----~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t  567 (732)
                      ++.++.+      ..+.+||..+.......        ...+..     .-..+...++ ..+++.+..++.+.++|..+
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK-GSVFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG-GCEEECCSSSEEEEEECSTT
T ss_pred             eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCC-CCEEEecCcCCcEEecCccc
Confidence            9988753      36899999876532110        000000     0011112233 34455666667777777776


Q ss_pred             CeeeeEEecc-------C--CeeEEEEe-CCCCEEEEEEcCC--------eEEEEECCC---CeEEEEEcC---CCCCEE
Q 004737          568 GSCAGVFKCQ-------S--GATQMRFQ-PRLGRILAAAIEN--------YISILDVET---QVCRLKLQG---HKNQVH  623 (732)
Q Consensus       568 ~~~i~~~~~~-------~--~i~~v~~s-p~g~~ll~~s~dg--------~I~IwDl~t---~~~i~~l~~---h~~~V~  623 (732)
                      ..........       .  .-.++.+. .+++.+++++...        ...++++..   .........   +...-.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~  292 (387)
T d1k3ia3         213 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH  292 (387)
T ss_dssp             CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred             CcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc
Confidence            6543322110       0  11223333 3445555555321        233444332   111111111   122223


Q ss_pred             EEEEeCCCCEEEEEe-CC-----------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 004737          624 SVCWNTSGEYLASVS-DE-----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  683 (732)
Q Consensus       624 sla~spdg~~Lasgs-Dg-----------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~  683 (732)
                      +....+++++++.++ +.           .+.+||..+.. ...+..+......-....+.+||+.++.|+.
T Consensus       293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~-W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe-EEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence            555668999888766 21           47889987641 1111111111111123456799998888874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.27  E-value=0.036  Score=60.43  Aligned_cols=258  Identities=12%  Similarity=0.117  Sum_probs=143.3

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCC-ceEEEEEcC--CCCeEEEEe------CCCeEEEEecCCCCceeEEee
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~-~V~~l~fsp--dg~~Lasgs------~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      +..++.+..|+.|.-.|..+++.+.....+.. .-..+.-.|  ....++.+.      ..|.|.-+|..+++..-+...
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            44678888899999999999999877643211 001111111  122333332      236899999999886444332


Q ss_pred             cC-----------------------------Ccce-EEEEEcCCCCcEEEEEeC------------------CCcEEEEE
Q 004737          533 GH-----------------------------STTV-MSLDFHPSKEDLLCSCDN------------------NSEIRYWS  564 (732)
Q Consensus       533 ~h-----------------------------~~~V-~sl~fspdg~~llaSgs~------------------Dg~I~iWD  564 (732)
                      ..                             ...+ ..+.+.+....+++..+.                  ...|...|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            11                             1112 124555654433332211                  23577789


Q ss_pred             CCCCeeeeEEeccC-C---------eeEEEEeCCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCE--------
Q 004737          565 INNGSCAGVFKCQS-G---------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQV--------  622 (732)
Q Consensus       565 l~t~~~i~~~~~~~-~---------i~~v~~sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~V--------  622 (732)
                      +++++....+.... .         ..-+.+..++.   .++.+..+|.++++|..+++.+.....-. ...        
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            99999887665321 1         11122333332   35567778999999999998876543110 000        


Q ss_pred             ---------------------------EEEEEeCCCCEEEEEe-C-----------------------------------
Q 004737          623 ---------------------------HSVCWNTSGEYLASVS-D-----------------------------------  639 (732)
Q Consensus       623 ---------------------------~sla~spdg~~Lasgs-D-----------------------------------  639 (732)
                                                 ...+++|+..+++... +                                   
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                                       1345667766666543 2                                   


Q ss_pred             -CeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccC-CCCeeEEEEeCCC
Q 004737          640 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN  716 (732)
Q Consensus       640 -g~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h-~~~V~sla~spdg  716 (732)
                       |.|.-||+.++   +.+-.... ..+...-.+.-.+..+++++.|+.++.||.++|+.+ .+... ...-.-+.|..+|
T Consensus       437 ~G~l~A~D~~tG---k~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG  512 (560)
T d1kv9a2         437 SGALLAWDPVKQ---KAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG  512 (560)
T ss_dssp             EEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccceEEEeCCCC---eEeeeccC-CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence             34666777776   33333221 112222233445667888999999999999999999 33321 1111124555677


Q ss_pred             C-EEEEEE
Q 004737          717 G-MVASAS  723 (732)
Q Consensus       717 ~-~LaSgs  723 (732)
                      + ||+..+
T Consensus       513 kqyv~v~a  520 (560)
T d1kv9a2         513 RQYVAIMA  520 (560)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            5 555443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.22  E-value=0.052  Score=59.62  Aligned_cols=153  Identities=9%  Similarity=0.026  Sum_probs=90.1

Q ss_pred             CCEEEEEECCCcEEEEEcCCCeEEEEeccCCCce-EEEEEcC--CCCeEEEEeC------CCeEEEEecCCCCceeEEee
Q 004737          462 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-TDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       462 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V-~~l~fsp--dg~~Lasgs~------Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      ..+|+.++.|+.|.-.|.++++.+..+....... ..+.-.|  -+..++++..      .|.|+-+|+.+++..-+...
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            3478888999999999999999987764211100 0111111  1334555532      48999999999886444322


Q ss_pred             cC------------------------------------Ccc-eEEEEEcCCCCcEEEEEeC----------------CCc
Q 004737          533 GH------------------------------------STT-VMSLDFHPSKEDLLCSCDN----------------NSE  559 (732)
Q Consensus       533 ~h------------------------------------~~~-V~sl~fspdg~~llaSgs~----------------Dg~  559 (732)
                      ..                                    ... -..+.+.+..+.++ .+..                ...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy-~~tg~~~p~~~~~r~g~n~ys~s  279 (596)
T d1w6sa_         201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMT  279 (596)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSE
T ss_pred             cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeee-ccccccccccccccccccccccc
Confidence            10                                    011 12345555543333 3321                234


Q ss_pred             EEEEECCCCeeeeEEeccC----------CeeEEEE-eCCCC---EEEEEEcCCeEEEEECCCCeEEEEE
Q 004737          560 IRYWSINNGSCAGVFKCQS----------GATQMRF-QPRLG---RILAAAIENYISILDVETQVCRLKL  615 (732)
Q Consensus       560 I~iWDl~t~~~i~~~~~~~----------~i~~v~~-sp~g~---~ll~~s~dg~I~IwDl~t~~~i~~l  615 (732)
                      |...|+++++.+..+....          ....+.. ..++.   .++....+|.++++|..+++.+...
T Consensus       280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence            7788999999988776321          1122222 22332   4566777899999999999877543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.09  E-value=0.066  Score=58.50  Aligned_cols=187  Identities=8%  Similarity=-0.028  Sum_probs=107.4

Q ss_pred             CEEEEEECCCcEEEEEcCCCeEEEEeccCC--------Cce-EEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeec
Q 004737          463 KLLATGGHDKKAVLWCTESFTVKSTLEEHT--------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       463 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~--------~~V-~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      ..|++++.++.|.-.|..+|+.+-++....        ..+ ..+++.  +..++.++.|+.+.-.|..+++.......+
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence            366777888999999999999987763210        011 122332  346778889999999999998754333221


Q ss_pred             CCcce-----EEEEEcC--CCCcEEEEE------eCCCcEEEEECCCCeeeeEEeccC----------------------
Q 004737          534 HSTTV-----MSLDFHP--SKEDLLCSC------DNNSEIRYWSINNGSCAGVFKCQS----------------------  578 (732)
Q Consensus       534 h~~~V-----~sl~fsp--dg~~llaSg------s~Dg~I~iWDl~t~~~i~~~~~~~----------------------  578 (732)
                      .....     .-+.+.+  ....+++.+      +..+.|.-+|.++++.+..+....                      
T Consensus       147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~  226 (582)
T d1flga_         147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence            11000     0011111  122333332      234678899999998877654211                      


Q ss_pred             -------------------C-eeEEEEeCCCCEEEEEEc------------------------CCeEEEEECCCCeEEEE
Q 004737          579 -------------------G-ATQMRFQPRLGRILAAAI------------------------ENYISILDVETQVCRLK  614 (732)
Q Consensus       579 -------------------~-i~~v~~sp~g~~ll~~s~------------------------dg~I~IwDl~t~~~i~~  614 (732)
                                         . -..+++.+..+.++++..                        ...|...|.++++.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~  306 (582)
T d1flga_         227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence                               0 123677888788777652                        13577889999988877


Q ss_pred             EcC--CCCCE-------EEEEEe-CCCC---EEEEEe-CCeEEEEECCCCC
Q 004737          615 LQG--HKNQV-------HSVCWN-TSGE---YLASVS-DELVRVWSIGSGS  651 (732)
Q Consensus       615 l~~--h~~~V-------~sla~s-pdg~---~Lasgs-Dg~I~IWDl~t~~  651 (732)
                      +..  |.-..       .-+.+. .+++   .++... ++.++++|..+++
T Consensus       307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~  357 (582)
T d1flga_         307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc
Confidence            653  22111       111221 2332   333344 7788888887773

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.06  E-value=0.048  Score=55.67  Aligned_cols=188  Identities=15%  Similarity=0.226  Sum_probs=122.3

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEc------CCCCeEEEEe-C-C--CeEEEEecCCCCceeE
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS------PSLSRLATSS-A-D--RTVRVWDTENPDYSLR  529 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fs------pdg~~Lasgs-~-D--g~I~IWDl~s~~~~~~  529 (732)
                      |+..+++....++-|++||+. |+.+..+.  .+.+..|..-      .....|++++ . +  .+|.+|.+......+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345567766777779999985 77777664  3455555443      2222345554 2 2  3688898874443343


Q ss_pred             EeecC-------CcceEEEEE--cCC-CCcEEEEEeCCCcEEEEECC---CC----eeeeEEeccCCeeEEEEeCCCCEE
Q 004737          530 TFTGH-------STTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI  592 (732)
Q Consensus       530 ~l~~h-------~~~V~sl~f--spd-g~~llaSgs~Dg~I~iWDl~---t~----~~i~~~~~~~~i~~v~~sp~g~~l  592 (732)
                      .+...       ...+..+|+  ++. +..+++....+|.+..|.+.   .+    +.++.+.....+..+.+....+.|
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L  194 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL  194 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence            33221       234677777  554 44566677889999888763   22    455677777889999999999999


Q ss_pred             EEEEcCCeEEEEECCC-----CeEEEEEcC--CCCCEEEEEEeC--CCC-EEEEEe--CCeEEEEECCCC
Q 004737          593 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SGE-YLASVS--DELVRVWSIGSG  650 (732)
Q Consensus       593 l~~s~dg~I~IwDl~t-----~~~i~~l~~--h~~~V~sla~sp--dg~-~Lasgs--Dg~I~IWDl~t~  650 (732)
                      +++-.+..|..|+.+.     ...+....+  ....+..|+.-.  ++. ||++++  +++..|||....
T Consensus       195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999988888887652     233333322  356778887653  333 777776  889999998764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.84  E-value=0.19  Score=54.58  Aligned_cols=253  Identities=9%  Similarity=0.057  Sum_probs=135.2

Q ss_pred             EEEEEECCCcEEEEEcCCCeEEEEecc--CCC-ceEEEEEcC--CCCeEEEEe------CCCeEEEEecCCCCceeEEee
Q 004737          464 LLATGGHDKKAVLWCTESFTVKSTLEE--HTQ-WITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT  532 (732)
Q Consensus       464 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~-~V~~l~fsp--dg~~Lasgs------~Dg~I~IWDl~s~~~~~~~l~  532 (732)
                      .++.++.|+.+.-.|.++++.+.....  +.. .+. +.-.|  -+..+++++      ..|.|+.+|.++++..-+...
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  208 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLT-ITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS  208 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEE-eecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence            567778899999999999998765532  111 111 11111  123444443      247899999999885443221


Q ss_pred             cC------------------------------Ccce-EEEEEcCCCCcEEEEEe------------------CCCcEEEE
Q 004737          533 GH------------------------------STTV-MSLDFHPSKEDLLCSCD------------------NNSEIRYW  563 (732)
Q Consensus       533 ~h------------------------------~~~V-~sl~fspdg~~llaSgs------------------~Dg~I~iW  563 (732)
                      ..                              ...+ ....+.++...+++..+                  ....|...
T Consensus       209 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAl  288 (573)
T d1kb0a2         209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL  288 (573)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEe
Confidence            10                              0112 12445555333332111                  01246677


Q ss_pred             ECCCCeeeeEEecc----------CCeeEEEEeCCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC---------
Q 004737          564 SINNGSCAGVFKCQ----------SGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQ---------  621 (732)
Q Consensus       564 Dl~t~~~i~~~~~~----------~~i~~v~~sp~g---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~---------  621 (732)
                      |+++++....+...          ..........++   ..++.++.+|.++++|..+++.+.........         
T Consensus       289 d~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~  368 (573)
T d1kb0a2         289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHG  368 (573)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTS
T ss_pred             cccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccccc
Confidence            88888877665531          112222222333   24566677899999999999887654321100         


Q ss_pred             --------------------------EEEEEEeCCCCEEEEEe-CC----------------------------------
Q 004737          622 --------------------------VHSVCWNTSGEYLASVS-DE----------------------------------  640 (732)
Q Consensus       622 --------------------------V~sla~spdg~~Lasgs-Dg----------------------------------  640 (732)
                                                -..++++|+..+++... +.                                  
T Consensus       369 ~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  448 (573)
T d1kb0a2         369 KPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA  448 (573)
T ss_dssp             CEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred             ceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccccc
Confidence                                      01246777766666543 33                                  


Q ss_pred             ---------eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCC-CeeE
Q 004737          641 ---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK-LVSS  709 (732)
Q Consensus       641 ---------~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~-~V~s  709 (732)
                               .|.-||+.++   +.+-..... .+...-..+-.+..+++++.|+.++.||.++|+.+ .+..... .-.-
T Consensus       449 ~p~~~~~~G~l~AiD~~tG---k~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P  524 (573)
T d1kb0a2         449 EPPKSKPFGRLLAWDPVAQ---KAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP  524 (573)
T ss_dssp             SCCCSCCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             CCCCCCCcccEEEeCCCCC---ceEeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC
Confidence                     2444455444   222222211 11111123346778888999999999999999998 3331111 1111


Q ss_pred             EEEeCCCC-EEEE
Q 004737          710 LAASTVNG-MVAS  721 (732)
Q Consensus       710 la~spdg~-~LaS  721 (732)
                      +.|..+|+ ||+.
T Consensus       525 ~ty~~~GkQYv~v  537 (573)
T d1kb0a2         525 STYMVDGRQYVSV  537 (573)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEE
Confidence            44555776 4443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.65  E-value=0.41  Score=48.14  Aligned_cols=186  Identities=8%  Similarity=0.044  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCeEEEEe------------CCCeEEEEecCCCCceeEEeecCC-------cceEEEEE--cCCCCcEEEE
Q 004737          495 ITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDF--HPSKEDLLCS  553 (732)
Q Consensus       495 V~~l~fspdg~~Lasgs------------~Dg~I~IWDl~s~~~~~~~l~~h~-------~~V~sl~f--spdg~~llaS  553 (732)
                      ..++...|+|..+++++            ..|.|.++|+.+.......+....       -....+++  .+++...|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            34566666666555543            148999999987654333322111       12234443  3455555555


Q ss_pred             Ee---CCCcEEEEECCCCe--eee--EEecc--CCeeEEEEeCCCCEEEEEEc---------------CCeEEEEECCCC
Q 004737          554 CD---NNSEIRYWSINNGS--CAG--VFKCQ--SGATQMRFQPRLGRILAAAI---------------ENYISILDVETQ  609 (732)
Q Consensus       554 gs---~Dg~I~iWDl~t~~--~i~--~~~~~--~~i~~v~~sp~g~~ll~~s~---------------dg~I~IwDl~t~  609 (732)
                      ..   ...+|.+|++....  ...  .+...  .....+++..++.++++-..               -+...+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            42   35578888875332  221  22221  23678888888776666321               122334444444


Q ss_pred             eEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CCeEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 004737          610 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       610 ~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      +...... .-...+.|+++||+++|+++.  .+.|++|++............. .....-.+.+.+.+..+++++
T Consensus       197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             ceEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence            3332222 335689999999999988887  7799999997654333333332 445566778876443344443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.30  E-value=0.96  Score=48.78  Aligned_cols=78  Identities=9%  Similarity=0.041  Sum_probs=45.0

Q ss_pred             eEEEEECCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEcc-CCCCeeEEEEeCCCC-
Q 004737          641 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNG-  717 (732)
Q Consensus       641 ~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~-h~~~V~sla~spdg~-  717 (732)
                      .|.-+|+.++   +.+-..... .++..-.++..+..+++++.|+.++.||.++|+.+ .+.- ....-.-+.|..+|+ 
T Consensus       467 ~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         467 SLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             eEEEEcCCCC---cEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4555666665   233222211 22222234456777889999999999999999999 3332 111112256667886 


Q ss_pred             EEEEE
Q 004737          718 MVASA  722 (732)
Q Consensus       718 ~LaSg  722 (732)
                      ||+..
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.54  E-value=0.74  Score=46.44  Aligned_cols=182  Identities=12%  Similarity=0.189  Sum_probs=108.7

Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeeEEeccCCeeEEEEeC------CCCEEEEEEc-C---CeEEEEECCC-CeEEEEEc
Q 004737          548 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP------RLGRILAAAI-E---NYISILDVET-QVCRLKLQ  616 (732)
Q Consensus       548 ~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~i~~v~~sp------~g~~ll~~s~-d---g~I~IwDl~t-~~~i~~l~  616 (732)
                      ..+++.....+-|++||+. |+.+..+.. +.+..+..-.      ....+++++. +   ..|.+|.+.. ...+..+.
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~  117 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT  117 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence            3566677777779999996 777766542 4555554432      2223455553 2   3677777652 22333333


Q ss_pred             CC-------CCCEEEEEE--eCC-CCEEEE-Ee-CCeEEEEECCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEE
Q 004737          617 GH-------KNQVHSVCW--NTS-GEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV  680 (732)
Q Consensus       617 ~h-------~~~V~sla~--spd-g~~Las-gs-Dg~I~IWDl~t~~~----~~~i~~~~~~~~~I~sl~fspdg~~L~s  680 (732)
                      ..       ...+..+|+  ++. +.+.+. .. +|.+..|.+.....    ...+..+. ....+..|++.+....|++
T Consensus       118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred             ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEE
Confidence            21       124667777  554 554444 44 78888887743221    23444443 4567999999999999999


Q ss_pred             EEcCCeEEEEECCC-----CeEEE-Ec--cCCCCeeEEEEeC--CC-CEEEEEE-CCCeEEEeC
Q 004737          681 IGCYETLELWNMTE-----NKTLT-LS--AHDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK  732 (732)
Q Consensus       681 gs~dg~I~IwDl~t-----~~~~~-~~--~h~~~V~sla~sp--dg-~~LaSgs-~DG~I~IWD  732 (732)
                      +-++..|+.++...     ...+. ..  .....+..|++-.  ++ .||++.+ .|++..|||
T Consensus       197 sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            99988888777642     22232 21  2356788887643  32 3655554 567787775

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.54  E-value=0.93  Score=42.03  Aligned_cols=212  Identities=10%  Similarity=0.048  Sum_probs=111.0

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCeEEEEeccCCCceEEEEEcC-CCCeEEEE------eCCCeEEEEecCCCCceeEEeec
Q 004737          461 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATS------SADRTVRVWDTENPDYSLRTFTG  533 (732)
Q Consensus       461 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~V~~l~fsp-dg~~Lasg------s~Dg~I~IWDl~s~~~~~~~l~~  533 (732)
                      +.++|+++...|.|.++-+..++.+..-+   .+|.....-. .-.++..+      -.-..|.+-++..+.... .+. 
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~-~i~-   99 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE-   99 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEE-ECT-
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeee-Eec-
Confidence            34578888889999999888777664432   2332221110 11112111      112234555555333211 122 


Q ss_pred             CCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEEeccCC----------eeEEEE-eCCCCEEEEEEc-CCeE
Q 004737          534 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG----------ATQMRF-QPRLGRILAAAI-ENYI  601 (732)
Q Consensus       534 h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~~~~~~~----------i~~v~~-sp~g~~ll~~s~-dg~I  601 (732)
                      ...++.-+...-+++.++++|+....+.+|-++.|+.........-          |..+.+ .+....++++.- .|.+
T Consensus       100 spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         100 AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred             CCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence            1223443444445678888999888899999998876654443221          222222 222222344443 4555


Q ss_pred             EEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEe--CC--eEEEEECCCCCCceeEEEee------cCCCceEEEEE
Q 004737          602 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELS------CTGNKFHSCVF  671 (732)
Q Consensus       602 ~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasgs--Dg--~I~IWDl~t~~~~~~i~~~~------~~~~~I~sl~f  671 (732)
                      +|++.           ..+.++.....+..+. ++.-  -|  ...-+|+++++-  .-.++.      .....|.-+-+
T Consensus       180 ri~tp-----------keGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~y--erve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         180 RVFDS-----------GEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSV--EDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEECC-----------SSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCE--EECCCSSCHHHHHCCSEEEEEEE
T ss_pred             EEecC-----------CCCcccceeEccCcee-eeccCCCCceEEEEEecccCce--eeeecCcccceeecceEEEeeee
Confidence            55554           3445555555665555 3332  12  223446665421  001111      12345666779


Q ss_pred             eCCCCEEEEEEcCCeEEEEE
Q 004737          672 HPTFPSLLVIGCYETLELWN  691 (732)
Q Consensus       672 spdg~~L~sgs~dg~I~IwD  691 (732)
                      .|+++.++++-.||.-.+|.
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEecCCchheee
Confidence            99999889999999888875

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.45  Score=45.41  Aligned_cols=216  Identities=7%  Similarity=-0.037  Sum_probs=97.5

Q ss_pred             CcEEEEEcCCCeEEE--EeccCCCceEEEEEcCCCCeEEEEeC---------CCeEEEEecCCCCceeEEeecC-CcceE
Q 004737          472 KKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGH-STTVM  539 (732)
Q Consensus       472 g~I~VWd~~t~~~~~--~l~~h~~~V~~l~fspdg~~Lasgs~---------Dg~I~IWDl~s~~~~~~~l~~h-~~~V~  539 (732)
                      ..|.+||+++.+-..  .+......-..+.+  ++.+++.|+.         -..+.+||..+.......-... .....
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            367899998865332  22221212222222  4556666542         1356778877644321110001 11111


Q ss_pred             EEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEEeccCC--eeEEEEeCCCCEEEEEEcC-----CeEEEEECC
Q 004737          540 SLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVE  607 (732)
Q Consensus       540 sl~fspdg~~llaSgs~Dg-----~I~iWDl~t~~~i~~~~~~~~--i~~v~~sp~g~~ll~~s~d-----g~I~IwDl~  607 (732)
                      ++.+  + ..+++.++.++     .+..+|..+............  -..+... .+..++.++.+     ..+..||..
T Consensus        97 ~~~~--~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~  172 (288)
T d1zgka1          97 VGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPE  172 (288)
T ss_dssp             EEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             cccc--c-eeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecc
Confidence            2222  2 34444554333     344567666543322211111  1222222 33445555443     457888988


Q ss_pred             CCeEEEEEcC-CCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEECCCCCCceeEEEeec-CCCce-EEEEEeCCCCEE
Q 004737          608 TQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSC-TGNKF-HSCVFHPTFPSL  678 (732)
Q Consensus       608 t~~~i~~l~~-h~~~V~sla~spdg~~Lasgs-Dg-----~I~IWDl~t~~~~~~i~~~~~-~~~~I-~sl~fspdg~~L  678 (732)
                      +.+....-.. ......+++.. ++.+++.++ ++     .+.++|..+..   . ..+.. ..... .+++. .+++.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~---~-~~~~~~p~~r~~~~~~~-~~~~l~  246 (288)
T d1zgka1         173 RNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET---W-TFVAPMKHRRSALGITV-HQGRIY  246 (288)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE---E-EECCCCSSCCBSCEEEE-ETTEEE
T ss_pred             ccccccccccccccccccccce-eeeEEEecCccccccccceeeeeeccee---e-ecccCccCcccceEEEE-ECCEEE
Confidence            7654432111 11111233333 344444443 32     56777776641   1 12111 11112 22333 356767


Q ss_pred             EEEEcCC-----eEEEEECCCCeEEE
Q 004737          679 LVIGCYE-----TLELWNMTENKTLT  699 (732)
Q Consensus       679 ~sgs~dg-----~I~IwDl~t~~~~~  699 (732)
                      ++|+.++     .|.+||+.+++...
T Consensus       247 v~GG~~~~~~~~~v~~yd~~~~~W~~  272 (288)
T d1zgka1         247 VLGGYDGHTFLDSVECYDPDTDTWSE  272 (288)
T ss_dssp             EECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             EEecCCCCeecceEEEEECCCCEEEE
Confidence            7776544     58999999876553

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.67  E-value=3  Score=43.14  Aligned_cols=55  Identities=13%  Similarity=0.151  Sum_probs=38.7

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCcee-EEe------ecCCcceEEEEEcCC
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTF------TGHSTTVMSLDFHPS  546 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~-~~l------~~h~~~V~sl~fspd  546 (732)
                      -...++|+|.||+++|++--.+|.|++++..++.... ..+      ..-......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3467899999999988877557999999887765321 111      112346789999985

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.06  E-value=0.9  Score=46.26  Aligned_cols=175  Identities=16%  Similarity=0.123  Sum_probs=101.6

Q ss_pred             CeEEEEEcCCCCEEEEEECCCcEEEEEcCC-----------CeEEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEEEe
Q 004737          452 KVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  520 (732)
Q Consensus       452 ~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~IWD  520 (732)
                      ...-+++++...+++.|+.++ ++|..++.           ........  -..|..++|+.|  .|+.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            356788888777888888774 66665321           11111111  125888999755  45554 456788888


Q ss_pred             cCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE------EeccCCeeEEEEeCCCCEEEE
Q 004737          521 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV------FKCQSGATQMRFQPRLGRILA  594 (732)
Q Consensus       521 l~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~~------~~~~~~i~~v~~sp~g~~ll~  594 (732)
                      ...-.. .........++..+.+.|.   .++....++.+.++++..++....      +.....+.+++|++.+..+++
T Consensus       112 ~~~l~~-~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         112 LEELSE-FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             SSSTTC-EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             eecccc-ccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            776432 3333444567888888875   344566689999999988764332      223456777777777666666


Q ss_pred             EEcCCeEEE-EECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEE
Q 004737          595 AAIENYISI-LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV  637 (732)
Q Consensus       595 ~s~dg~I~I-wDl~t~~~i~~l~~h~~~V~sla~spdg~~Lasg  637 (732)
                      +..+. ..+ -++.....+.........|.+|.|-.+..++++.
T Consensus       188 ~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            53221 111 1111111000000133467888888777666654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.22  E-value=3.1  Score=42.11  Aligned_cols=177  Identities=11%  Similarity=0.035  Sum_probs=99.1

Q ss_pred             ceEEEEEcCCCCcEEEEEeCCCcEEEEECC-----------CCeeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEE
Q 004737          537 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-----------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD  605 (732)
Q Consensus       537 ~V~sl~fspdg~~llaSgs~Dg~I~iWDl~-----------t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD  605 (732)
                      ...-+++++.. -++++|+.++ +.|....           .......... ..+..++|+.+  . ++...++.+..++
T Consensus        38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i-p~v~~vafs~d--~-l~v~~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI-PDVIFVCFHGD--Q-VLVSTRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC-TTEEEEEEETT--E-EEEEESSEEEEEE
T ss_pred             ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC-CCeEEEEeeCC--E-EEEEeCCCEEEEE
Confidence            45667777763 4555666564 6666531           1112222222 35788888755  3 4445667888888


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeE---EEeecCCCceEEEEEeCCCCEEEEEE
Q 004737          606 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI---HELSCTGNKFHSCVFHPTFPSLLVIG  682 (732)
Q Consensus       606 l~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i---~~~~~~~~~I~sl~fspdg~~L~sgs  682 (732)
                      ...-........-..++..+.+.|.. .++...++.+.++++.........   ..+ .-...+.+++|++.+..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~-~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSF-DVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEE-EECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceE-EecCCceEEEEeCCcEEEEEeC
Confidence            87754444444445678899988753 344444999999999887432221   111 1235677788888887776664


Q ss_pred             cCCeEEEE-ECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEE
Q 004737          683 CYETLELW-NMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  722 (732)
Q Consensus       683 ~dg~I~Iw-Dl~t~~~~-~~~~h~~~V~sla~spdg~~LaSg  722 (732)
                      .+. ..+. ++.....+ ........|.+|.|-.+..++++-
T Consensus       190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            332 2111 11111111 001234467888887666655544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.19  E-value=4.5  Score=40.01  Aligned_cols=184  Identities=14%  Similarity=0.083  Sum_probs=104.9

Q ss_pred             EEEEEcCCCCEEEEEEC------------CCcEEEEEcCCCeEE-EEe--ccCC-----CceEEEEE--cCCCC-eEEEE
Q 004737          454 ESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVK-STL--EEHT-----QWITDVRF--SPSLS-RLATS  510 (732)
Q Consensus       454 ~~lafSpdg~~Lasgs~------------Dg~I~VWd~~t~~~~-~~l--~~h~-----~~V~~l~f--spdg~-~Lasg  510 (732)
                      -+++..|||..+++++.            .|.|.++|+.+.+.. ..+  .+..     -....+.+  .+++. +|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35777888876665532            388999998764322 111  1110     12233333  44565 34454


Q ss_pred             e---CCCeEEEEecCCCCceeEEe---e-cCCcceEEEEEcCCCCcEEEEEeC---------------CCcEEEEECCCC
Q 004737          511 S---ADRTVRVWDTENPDYSLRTF---T-GHSTTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNG  568 (732)
Q Consensus       511 s---~Dg~I~IWDl~s~~~~~~~l---~-~h~~~V~sl~fspdg~~llaSgs~---------------Dg~I~iWDl~t~  568 (732)
                      .   ...+|.+|++......+...   . ......+.+++..++ .+++|-..               -+...+|....+
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            3   45689999887554333221   1 112446888888876 45555211               123344444444


Q ss_pred             eeeeEEeccCCeeEEEEeCCCCEEEEEEc-CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEeC-CCCEEEEEeC
Q 004737          569 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV---CRLKLQGHKNQVHSVCWNT-SGEYLASVSD  639 (732)
Q Consensus       569 ~~i~~~~~~~~i~~v~~sp~g~~ll~~s~-dg~I~IwDl~t~~---~i~~l~~h~~~V~sla~sp-dg~~LasgsD  639 (732)
                      +.......-.....++++|++++++++.. .+.|++|++....   ....+. -....-.+.+.+ +|.+.+++..
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEECC
Confidence            44444444466889999999998887766 5799999987542   222222 345567788876 4566555543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=1.1  Score=42.44  Aligned_cols=202  Identities=6%  Similarity=-0.086  Sum_probs=90.5

Q ss_pred             eEEEEecCCCCceeE-EeecCCcceEEEEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEEeccCC-eeEE
Q 004737          515 TVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSG-ATQM  583 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~-~l~~h~~~V~sl~fspdg~~llaSgs~---------Dg~I~iWDl~t~~~i~~~~~~~~-i~~v  583 (732)
                      .|.+||+.+...... .+....... +++.. + ..+++.|+.         -..+.+||..+......-....+ ....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee-EEEEE-C-CEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            578999887653221 111111111 22222 2 455555542         23678888877665433221111 1111


Q ss_pred             EEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEEcCCCC-CEEEEEEeCCCCEEEEEe-C-----CeEEEEECCCCC
Q 004737          584 RFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGS  651 (732)
Q Consensus       584 ~~sp~g~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~h~~-~V~sla~spdg~~Lasgs-D-----g~I~IWDl~t~~  651 (732)
                      +...++..++.++.++     .+..||..+......-..... .-.++... ++.+++.++ +     ..+..||..+. 
T Consensus        97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~-  174 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN-  174 (288)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred             ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecccc-
Confidence            1222444444444332     455677777644322111111 11122222 334444443 2     25788887664 


Q ss_pred             CceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCeEEEEccC-CCCe-eEEEEeCCCCEEEEE
Q 004737          652 KGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAH-DKLV-SSLAASTVNGMVASA  722 (732)
Q Consensus       652 ~~~~i~~~~~~--~~~I~sl~fspdg~~L~sgs~dg-----~I~IwDl~t~~~~~~~~h-~~~V-~sla~spdg~~LaSg  722 (732)
                        .. ......  .....+++.. .+..++.++.++     .+.+||..+.+...+... .... .+++. .++++++.|
T Consensus       175 --~~-~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~G  249 (288)
T d1zgka1         175 --EW-RMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLG  249 (288)
T ss_dssp             --EE-EECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEC
T ss_pred             --cc-ccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEe
Confidence              11 111111  1111222222 344455554443     678889888877654322 1112 23333 367777777


Q ss_pred             ECCC
Q 004737          723 SHDK  726 (732)
Q Consensus       723 s~DG  726 (732)
                      +.++
T Consensus       250 G~~~  253 (288)
T d1zgka1         250 GYDG  253 (288)
T ss_dssp             CBCS
T ss_pred             cCCC
Confidence            7554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.74  E-value=8.2  Score=39.56  Aligned_cols=53  Identities=21%  Similarity=0.263  Sum_probs=39.1

Q ss_pred             CCeEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEE--ec------cCCCceEEEEEcCC
Q 004737          451 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LE------EHTQWITDVRFSPS  503 (732)
Q Consensus       451 ~~V~~lafSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~--l~------~h~~~V~~l~fspd  503 (732)
                      ..-++|+|.|||++|++--.+|.|++++..+++....  +.      .-......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4578999999999888775579999999877655432  21      12345789999985

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=89.81  E-value=8.2  Score=36.28  Aligned_cols=218  Identities=11%  Similarity=0.005  Sum_probs=106.0

Q ss_pred             CCceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-ee
Q 004737          492 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SC  570 (732)
Q Consensus       492 ~~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~-~~  570 (732)
                      ...|..|+-..  .+.+.-. ||.|..|-...... +-.-......|..|..-.  ...++ - .|+.++.|..... ..
T Consensus        25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQ-lG~~~~~~~~v~~v~~G~--~~~~a-l-~dg~v~~wG~~~~gq~   96 (273)
T d1jtdb_          25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGN--YHSLA-L-KDGEVIAWGGNEDGQT   96 (273)
T ss_dssp             SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTST-TSCCGGGGSCCCEEEECS--SEEEE-E-ETTEEEEEECCTTSTT
T ss_pred             CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCc-eeeeecccccceEEecCC--Cceee-e-eeeeeeccCCCcceee
Confidence            44577777632  2333334 89999997654332 111112234455555432  23333 2 3899999986432 21


Q ss_pred             eeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCC
Q 004737          571 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  650 (732)
Q Consensus       571 i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~  650 (732)
                      .........+..+.....  .. +...|+.+..|.................|..++-  ....++...++.++.|-....
T Consensus        97 ~~~~~~~~~~~~i~~~~~--~~-~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~  171 (273)
T d1jtdb_          97 TVPAEARSGVDAIAAGAW--AS-YALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYF  171 (273)
T ss_dssp             CCCGGGGSSCCEEEEETT--EE-EEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTT
T ss_pred             ccccccccceeEEeeecc--cc-cccccccceecccCCCCceeeeccCCceEEEEec--cceeeeeecccceeEeecccC
Confidence            111112233444444332  22 2335888888865432211111112234555443  233444445888999976543


Q ss_pred             CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEE
Q 004737          651 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVK  729 (732)
Q Consensus       651 ~~~~~i~~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~  729 (732)
                      ...   .........|..++...  .+.++.. |+.|+.|=....-.+ ........|..|+..... .++.  .||.|.
T Consensus       172 g~~---~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g~v~  242 (273)
T d1jtdb_         172 GQT---TVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNGKVI  242 (273)
T ss_dssp             STT---SCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETTEEE
T ss_pred             Ccc---cccccccCCccceeccc--eeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE--ECCEEE
Confidence            211   11111234566655433  2333333 789999954332111 112233457777754333 3443  379999


Q ss_pred             Ee
Q 004737          730 IW  731 (732)
Q Consensus       730 IW  731 (732)
                      .|
T Consensus       243 ~W  244 (273)
T d1jtdb_         243 AW  244 (273)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=88.70  E-value=3.5  Score=39.06  Aligned_cols=199  Identities=12%  Similarity=0.001  Sum_probs=93.8

Q ss_pred             eEEEEecCCCCceeEEeecCCcceEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-EEeccCCeeEEEEeCCCCEEE
Q 004737          515 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRIL  593 (732)
Q Consensus       515 ~I~IWDl~s~~~~~~~l~~h~~~V~sl~fspdg~~llaSgs~Dg~I~iWDl~t~~~i~-~~~~~~~i~~v~~sp~g~~ll  593 (732)
                      +|+.|--.+..............|..|+.-.  .+.+ .-. ||.|+.|-....-.+- .......+..+..-.  .+.+
T Consensus         5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G~--~h~~-al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~--~~~~   78 (273)
T d1jtdb_           5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGGY--FHGL-ALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSL   78 (273)
T ss_dssp             EEEEESSCCSSSTTCCCGGGSSSEEEEEECS--SEEE-EEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECS--SEEE
T ss_pred             EEEEECCCCCCCceeccccCCCCcEEEEccC--CEEE-EEE-CCEEEEEeCCCCCceeeeecccccceEEecCC--Ccee
Confidence            5777753322111112222345677777642  2333 344 8999999876532221 111223455554322  3333


Q ss_pred             EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCeEEEEECCCCCCceeEEEeecCCCceEEEEEeC
Q 004737          594 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  673 (732)
Q Consensus       594 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~V~sla~spdg~~LasgsDg~I~IWDl~t~~~~~~i~~~~~~~~~I~sl~fsp  673 (732)
                      + -.|+.++.|.....-...........+..++...  ...+...|+.+..|........ .  ........|..++-  
T Consensus        79 a-l~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~--~~~~~~~dg~v~~~g~~~~~~~-~--~~~~~~~~v~~~~~--  150 (273)
T d1jtdb_          79 A-LKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYALKDGKVIAWGDDSDGQT-T--VPAEAQSGVTALDG--  150 (273)
T ss_dssp             E-EETTEEEEEECCTTSTTCCCGGGGSSCCEEEEET--TEEEEEETTEEEEEECCTTSTT-S--CCGGGGSSEEEEEE--
T ss_pred             e-eeeeeeeccCCCcceeeccccccccceeEEeeec--ccccccccccceecccCCCCce-e--eeccCCceEEEEec--
Confidence            3 3589999997643211100011122344444332  2233335889999975443211 0  01111223333332  


Q ss_pred             CCCEEEEEEcCCeEEEEECCCCeEE-EEccCCCCeeEEEEeCCCCEEEEEECCCeEEEe
Q 004737          674 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  731 (732)
Q Consensus       674 dg~~L~sgs~dg~I~IwDl~t~~~~-~~~~h~~~V~sla~spdg~~LaSgs~DG~I~IW  731 (732)
                       +.+.++...++.++.|........ ........|..|+..... .++ -. ||.|+.|
T Consensus       151 -~~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h-~~~-l~-dG~v~~W  205 (273)
T d1jtdb_         151 -GVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLA-LK-DGKVIAW  205 (273)
T ss_dssp             -CSSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSE-EEE-EE-TTEEEEE
T ss_pred             -cceeeeeecccceeEeecccCCcccccccccCCccceecccee-eEE-Ee-cCcEEEc
Confidence             222344455788888876443222 222345567777764332 222 23 7888887

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.05  E-value=14  Score=35.83  Aligned_cols=182  Identities=8%  Similarity=0.035  Sum_probs=105.9

Q ss_pred             CcEEEEEeCCCcEEEEECCCC----eeeeEEeccCCeeEEEEeCCCCEEEEEEcCCeEEEEE---CCC------CeEEEE
Q 004737          548 EDLLCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD---VET------QVCRLK  614 (732)
Q Consensus       548 ~~llaSgs~Dg~I~iWDl~t~----~~i~~~~~~~~i~~v~~sp~g~~ll~~s~dg~I~IwD---l~t------~~~i~~  614 (732)
                      +.++++-+.+|.|+--++...    ..-..++....+..+........++.-+..|.++...   +..      |.++..
T Consensus         5 E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi~~   84 (323)
T d1wp5a_           5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIAN   84 (323)
T ss_dssp             CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGG
T ss_pred             CCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccccee
Confidence            456678888999987665321    0111123334455555555567788888888776654   331      333322


Q ss_pred             Ec--CCCCCEEEEEEeC---CCCEEEEEe-CCeEEEEECCCCCC---ceeEEE-eecCCCceEEEEEeCCCCEEEEEEcC
Q 004737          615 LQ--GHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSK---GECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCY  684 (732)
Q Consensus       615 l~--~h~~~V~sla~sp---dg~~Lasgs-Dg~I~IWDl~t~~~---~~~i~~-~~~~~~~I~sl~fspdg~~L~sgs~d  684 (732)
                      +-  .....|..+....   ...+|+..+ .|.++..++.....   ...+.. ....+..+..+.+......++.++..
T Consensus        85 ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~  164 (323)
T d1wp5a_          85 IIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHN  164 (323)
T ss_dssp             TSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETT
T ss_pred             eecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEec
Confidence            21  1233444443332   245666666 99999998754321   111111 11245567777777777889999999


Q ss_pred             CeEEEEECCCCeEE----------EEccCCCCee-EEEEeCCCCEEEEEECCCeEEE
Q 004737          685 ETLELWNMTENKTL----------TLSAHDKLVS-SLAASTVNGMVASASHDKCVKI  730 (732)
Q Consensus       685 g~I~IwDl~t~~~~----------~~~~h~~~V~-sla~spdg~~LaSgs~DG~I~I  730 (732)
                      |.+..|+...-...          .+. ....|. ...+.+++..|++.+..|..+.
T Consensus       165 G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr  220 (323)
T d1wp5a_         165 GYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKK  220 (323)
T ss_dssp             SEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred             ceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeec
Confidence            99999987543222          222 233444 4445566778888999888764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.59  E-value=13  Score=34.03  Aligned_cols=143  Identities=12%  Similarity=0.125  Sum_probs=80.4

Q ss_pred             CceEEEEEcCCCCeEEEEeCCCeEEEEecCCCCceeE-EeecC-------CcceEEEEEcCCCCcEEEEEeC-CCcEEEE
Q 004737          493 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYW  563 (732)
Q Consensus       493 ~~V~~l~fspdg~~Lasgs~Dg~I~IWDl~s~~~~~~-~l~~h-------~~~V~sl~fspdg~~llaSgs~-Dg~I~iW  563 (732)
                      -.|.++++. |.+..++|+....+.+|-++.++.... .+.+.       ...|..+.|...+..-++++.. .|.++++
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            456666664 446777888888889999887763211 11111       1233344433222222334444 6666666


Q ss_pred             ECCCCeeeeEEeccCCeeEEEEeCCCCEEEEEEc---CCeEEEEECCCCeEEEE-EcC------CCCCEEEEEEeCCCCE
Q 004737          564 SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLK-LQG------HKNQVHSVCWNTSGEY  633 (732)
Q Consensus       564 Dl~t~~~i~~~~~~~~i~~v~~sp~g~~ll~~s~---dg~I~IwDl~t~~~i~~-l~~------h~~~V~sla~spdg~~  633 (732)
                      +...|.          ++...+.+. +.+++...   +.....+|++.++.... +..      ..-.|+.+-+.|++++
T Consensus       183 tpkeGS----------~~~ay~~~g-nKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L  251 (313)
T d2hu7a1         183 DSGEGS----------FSSASISPG-MKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL  251 (313)
T ss_dssp             CCSSEE----------EEEEEECTT-SCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred             cCCCCc----------ccceeEccC-ceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence            655433          333334443 44444333   22344568887754432 221      2335777889999999


Q ss_pred             EEEEe-CCeEEEEEC
Q 004737          634 LASVS-DELVRVWSI  647 (732)
Q Consensus       634 Lasgs-Dg~I~IWDl  647 (732)
                      ++.+- ||.-++|.-
T Consensus       252 ~iiakrdG~s~lF~n  266 (313)
T d2hu7a1         252 AVVARREGRSAVFID  266 (313)
T ss_dssp             EEEEEETTEEEEEET
T ss_pred             EEEEecCCchheeec
Confidence            77777 999998874

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.34  E-value=19  Score=34.83  Aligned_cols=232  Identities=8%  Similarity=0.054  Sum_probs=126.0

Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCe----EEEEeccCCCceEEEEEcCCCCeEEEEeCCCeEEE---EecCCCCc-----e
Q 004737          460 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV---WDTENPDY-----S  527 (732)
Q Consensus       460 pdg~~Lasgs~Dg~I~VWd~~t~~----~~~~l~~h~~~V~~l~fspdg~~Lasgs~Dg~I~I---WDl~s~~~-----~  527 (732)
                      ++...+++-+.+|.|+--.+++.+    .-..++ ..+.+..+........|+.-+..|.++.   |++.....     +
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            566678888888888765543210    001122 2334555544444455666667776654   44442211     1


Q ss_pred             eEEe--ecCCcceEEEE-EcCC-CCcEEEEEeCCCcEEEEECCCCe--------eeeEEeccCCeeEEEEeCCCCEEEEE
Q 004737          528 LRTF--TGHSTTVMSLD-FHPS-KEDLLCSCDNNSEIRYWSINNGS--------CAGVFKCQSGATQMRFQPRLGRILAA  595 (732)
Q Consensus       528 ~~~l--~~h~~~V~sl~-fspd-g~~llaSgs~Dg~I~iWDl~t~~--------~i~~~~~~~~i~~v~~sp~g~~ll~~  595 (732)
                      +..+  ......+..+. ..+. ....++..+..|.++..++....        ....+.....+..+.+......++.+
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~  161 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV  161 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence            1111  11233444333 3321 13455577789999999874321        12233344557777777777899999


Q ss_pred             EcCCeEEEEECCCCe---------EEEEEcCCCCCEEEE-EEeCCCCEEEEEe-CCeEEEEECCCCCC----ceeEE---
Q 004737          596 AIENYISILDVETQV---------CRLKLQGHKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSK----GECIH---  657 (732)
Q Consensus       596 s~dg~I~IwDl~t~~---------~i~~l~~h~~~V~sl-a~spdg~~Lasgs-Dg~I~IWDl~t~~~----~~~i~---  657 (732)
                      +..|.+..|+...-.         ....+. ....|.+. ...+++..|+..+ .|..+...+.....    ..-+.   
T Consensus       162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k  240 (323)
T d1wp5a_         162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR  240 (323)
T ss_dssp             ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred             EecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeecccchhhcccccccccccccc
Confidence            999999999875321         112232 23445544 4455666777666 78777765543211    01111   


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 004737          658 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  693 (732)
Q Consensus       658 ~~~~~~~~I~sl~fspdg~~L~sgs~dg~I~IwDl~  693 (732)
                      ........+..+....+...|+..+..|.+.-.++.
T Consensus       241 ~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             ccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            222233456666666666677788888866655543