Citrus Sinensis ID: 004743
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | 2.2.26 [Sep-21-2011] | |||||||
| Q66GI4 | 572 | Proteinaceous RNase P 1, | yes | no | 0.501 | 0.641 | 0.549 | 1e-109 | |
| F4JKB6 | 576 | Proteinaceous RNase P 3 O | no | no | 0.493 | 0.626 | 0.453 | 3e-93 | |
| Q680B9 | 528 | Proteinaceous RNase P 2 O | no | no | 0.493 | 0.683 | 0.453 | 1e-86 | |
| O15091 | 583 | Mitochondrial ribonucleas | yes | no | 0.375 | 0.471 | 0.217 | 2e-07 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.209 | 0.242 | 0.259 | 9e-05 | |
| P0C896 | 576 | Pentatricopeptide repeat- | no | no | 0.127 | 0.161 | 0.268 | 0.0001 | |
| Q8JZY4 | 584 | Mitochondrial ribonucleas | yes | no | 0.372 | 0.467 | 0.209 | 0.0002 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.142 | 0.201 | 0.25 | 0.0002 | |
| B5DF07 | 587 | Mitochondrial ribonucleas | yes | no | 0.431 | 0.538 | 0.206 | 0.0003 | |
| Q9ZUA2 | 559 | Pentatricopeptide repeat- | no | no | 0.165 | 0.216 | 0.256 | 0.0004 |
| >sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 395 bits (1014), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 266/371 (71%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508
Query: 720 PRWKERHQASV 730
PRWKE+HQ +
Sbjct: 509 PRWKEKHQVRI 519
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Arabidopsis thaliana (taxid: 3702) |
| >sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (880), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/377 (45%), Positives = 236/377 (62%), Gaps = 16/377 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 506
Query: 712 QLLGNDFFPRWKERHQA 728
+LL N FF +WKERHQ
Sbjct: 507 ELLSNSFFQKWKERHQV 523
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/377 (45%), Positives = 240/377 (63%), Gaps = 16/377 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447
Query: 712 QLLGNDFFPRWKERHQA 728
+LLG+ FF +WKERHQ
Sbjct: 448 ELLGSTFFQKWKERHQV 464
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Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/327 (21%), Positives = 120/327 (36%), Gaps = 52/327 (15%)
Query: 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGD 474
I P ++Y + + DV+ A ++ + +L H + P L+A + +
Sbjct: 240 ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSN 299
Query: 475 RVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGL 534
++ +L LR + S A I WF S G W G
Sbjct: 300 KLLDILSYLRNNQLYPGESFAHSIKTWFESVP---------------------GKQWKG- 337
Query: 535 GWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRER 588
TTV C CG+ + I L P E E + I ++
Sbjct: 338 ----------QFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTT 387
Query: 589 NSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVL 648
++F+ ++ PF+ V+D NV + F R + ++ + + + L+VL
Sbjct: 388 PQELKRFENFIKSRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVL 443
Query: 649 HNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEM 706
R+ + Q + E K A +A S DD + LYA + C +T D M
Sbjct: 444 -GRKHMLRRSSQWSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLM 501
Query: 707 RDHTFQLL---GNDFFPRWKERHQASV 730
RDH L F +W++ HQ ++
Sbjct: 502 RDHKACLPDAKTQRLFFKWQQGHQLAI 528
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Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends. Homo sapiens (taxid: 9606) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8JZY4|MRRP3_MOUSE Mitochondrial ribonuclease P protein 3 OS=Mus musculus GN=Kiaa0391 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 122/325 (37%), Gaps = 52/325 (16%)
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRV 476
P ++YG + + DV+ A ++ + ++ H + P L+A + D++
Sbjct: 239 PSKKNYGDCIQGALLHQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKL 298
Query: 477 YYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536
+L LR + S A I WF S + ++W
Sbjct: 299 LDILLYLRNNQLYPGESFAHSIKTWFES-----IPGRQW--------------------- 332
Query: 537 LGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNS 590
KG++ TT+ C CG + I L P E E E + I K+
Sbjct: 333 --KGQF----TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQ 386
Query: 591 SFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHN 650
++F+ +++ PF+ V+D NV + + + VV+ + Q+ +
Sbjct: 387 ELKRFESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQNLQLL-----VLG 441
Query: 651 RRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRD 708
R+ Q + + K A +A S DD + LYA + C +T D +RD
Sbjct: 442 RKHMLRPSSQWRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRD 500
Query: 709 HTFQLL---GNDFFPRWKERHQASV 730
H L F +W++ HQ ++
Sbjct: 501 HKACLPDARTQRLFFKWQQGHQLAI 525
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Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends. Mus musculus (taxid: 10090) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ + ++E+M + MN + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA V M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
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Arabidopsis thaliana (taxid: 3702) |
| >sp|B5DF07|MRRP3_RAT Mitochondrial ribonuclease P protein 3 OS=Rattus norvegicus GN=Mrpp3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 145/377 (38%), Gaps = 61/377 (16%)
Query: 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431
++YE M + T + R + A +++ +K + + P ++YG +
Sbjct: 195 IDVYEIMKAKYKSLESGGYTLLIRGLIHSDRWREALLLLEDIKKVMV-PSKKNYGDCIQG 253
Query: 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK-------GDRVYYLLHKLR 484
+ DV+ A S+ + ++ H + P L L+ + GK +++ +L LR
Sbjct: 254 ALLHQDVNVAWSLYQELVGHNLIP----LLETLKAFFDHGKDMNDDQYSNQLLDILLYLR 309
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIV 544
+ S A I WF S + ++W KG++
Sbjct: 310 NNQLYPGESFAHSIKTWFES-----IPGRQW-----------------------KGQF-- 339
Query: 545 SHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKW 598
TT+ C CG + I L P E E E++ I K+ ++F+++
Sbjct: 340 --TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERF 397
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
+ PF+ V+D NV + F R + + GI + + +++ R+
Sbjct: 398 VKSCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQN-LQLLVLGRKHMLRPS 452
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIK--FKCLLVTNDEMRDHTFQLL-- 714
Q + + K A +A S DD + LYA + C +T D +RDH L
Sbjct: 453 SQWRKDEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDA 511
Query: 715 -GNDFFPRWKERHQASV 730
F +W++ HQ ++
Sbjct: 512 RAQRLFFKWQQGHQLAI 528
|
Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends. Rattus norvegicus (taxid: 10116) |
| >sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| 359484351 | 816 | PREDICTED: pentatricopeptide repeat-cont | 0.866 | 0.776 | 0.626 | 0.0 | |
| 297738805 | 751 | unnamed protein product [Vitis vinifera] | 0.811 | 0.790 | 0.638 | 0.0 | |
| 255546443 | 745 | multidrug resistance pump, putative [Ric | 0.788 | 0.774 | 0.635 | 0.0 | |
| 356527775 | 724 | PREDICTED: pentatricopeptide repeat-cont | 0.646 | 0.653 | 0.623 | 0.0 | |
| 449465334 | 633 | PREDICTED: proteinaceous RNase P 1, chlo | 0.770 | 0.890 | 0.606 | 0.0 | |
| 357520987 | 668 | Pentatricopeptide repeat-containing prot | 0.658 | 0.721 | 0.597 | 0.0 | |
| 357520951 | 702 | Pentatricopeptide repeat-containing prot | 0.658 | 0.686 | 0.597 | 0.0 | |
| 224119796 | 461 | predicted protein [Populus trichocarpa] | 0.501 | 0.796 | 0.772 | 1e-169 | |
| 413936385 | 684 | hypothetical protein ZEAMMB73_755879 [Ze | 0.698 | 0.747 | 0.514 | 1e-164 | |
| 115445507 | 719 | Os02g0273800 [Oryza sativa Japonica Grou | 0.665 | 0.677 | 0.554 | 1e-161 |
| >gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/683 (62%), Positives = 501/683 (73%), Gaps = 49/683 (7%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTM-------NSTELGDSRD-----------MDNNGQLDYGS-----SP 287
+G R+LD S+ + E GD+ + NN Y + SP
Sbjct: 176 TGSRSLDMLSPSSEVRGGVSEDLAEFGDTSKKNFGGPESKIPVSNNAMSVYSTKIHQNSP 235
Query: 288 --MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345
+++ S DDLD + E + L Q SN + NSQLL+G+ +L +G DD + KK
Sbjct: 236 KKVLNSNRSAFEVAKDDLDGSITEMDKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKK 295
Query: 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
+ DN EIR+SED KKYA +RGFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDM
Sbjct: 296 E---DN----EIRVSEDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDM 348
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFDMVK+MK LGINPRLRSYGPALS FCNNGD++KA VEEHMLEHGVYPEEPELEALLR
Sbjct: 349 AFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLR 408
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V +EAGK D+VYY+LHKLRTSVR+VS STA++I KWF S AA GK W++ LI + +
Sbjct: 409 VGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIV 468
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
N GGGWHG GWLGKGKW VSHT VG D LC CCGEKLA IDLDP ETEKFAESVASIAIK
Sbjct: 469 NGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIK 528
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
RE+NSSFQKFQKWLDYYGP+EAVVDAANVGL+SQR F P++VNA+VNGIRQ PSKKWPL
Sbjct: 529 REKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPL 588
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDE 705
I+LHN+RITG KMD+P NRALIEKWKNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDE
Sbjct: 589 IILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDE 648
Query: 706 MRDHTFQLLGNDFFPRWKERHQA 728
MRDH FQLLGNDFFP+WKERHQ
Sbjct: 649 MRDHIFQLLGNDFFPKWKERHQV 671
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/658 (63%), Positives = 485/658 (73%), Gaps = 64/658 (9%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+G RT FEV+ DDLD + E
Sbjct: 176 TGSRT---FEVAK-------------------------------------DDLDGSITEM 195
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
+ L Q SN + NSQLL+G+ +L +G DD + KK+ DN EIR+SED KKYA +R
Sbjct: 196 DKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKKE---DN----EIRVSEDFKKYALRR 248
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
GFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDMAFDMVK+MK LGINPRLRSYGPALS
Sbjct: 249 GFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALS 308
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
FCNNGD++KA VEEHMLEHGVYPEEPELEALLRV +EAGK D+VYY+LHKLRTSVR+V
Sbjct: 309 AFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQV 368
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S STA++I KWF S AA GK W++ LI + + N GGGWHG GWLGKGKW VSHT VG
Sbjct: 369 SHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVG 428
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
D LC CCGEKLA IDLDP ETEKFAESVASIAIKRE+NSSFQKFQKWLDYYGP+EAVVD
Sbjct: 429 ADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVD 488
Query: 611 AANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKW 670
AANVGL+SQR F P++VNA+VNGIRQ PSKKWPLI+LHN+RITG KMD+P NRALIEKW
Sbjct: 489 AANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKW 548
Query: 671 KNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQA 728
KNADALY TPTGSNDDWYWLYAAIKFKCL+VTNDEMRDH FQLLGNDFFP+WKERHQ
Sbjct: 549 KNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHIFQLLGNDFFPKWKERHQV 606
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis] gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/606 (63%), Positives = 464/606 (76%), Gaps = 29/606 (4%)
Query: 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201
K K K ++ ++ + +ME++ KV+ K SK++K D ++ + R+ELD C
Sbjct: 6 KGATKERKYMDNQLISGRMEKKPRKGSDNKVKEEKSGKWSKRNKGD-PQEVKFRLELDKC 64
Query: 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261
KRGDVM AI+LYD AQREGIK+GQYHY VLLYLCSSAA GVV+P KSG G R ++ V
Sbjct: 65 CKRGDVMAAIQLYDLAQREGIKMGQYHYTVLLYLCSSAAAGVVQPGKSGRGGRASNSLAV 124
Query: 262 STMNST-------ELGDSRDMDN-----------NGQLDYGSSP-MIDKLESNSSYRFDD 302
S S+ EL D D+D N +D G +P DK+E SS RF+D
Sbjct: 125 SDEVSSASVVEFRELRDKNDVDATESDTKILNNVNKVIDSGRNPGSKDKMELKSSNRFND 184
Query: 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362
DST NE++NL Q N Q L+ S + D + D + I +SED
Sbjct: 185 SDSTSNERKNLSQIPIVVSDSNYQQLECLSFPAKNNDGKY---------HDGNGILVSED 235
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KKYA +RGFEIYEKMC+D++PMNEA+LTAV R+AMSMG+GDMAFDMVK+MK LG+NPRL
Sbjct: 236 IKKYALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNPRL 295
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
RSYGPAL+ FC++GD DKA +VE+HML+HGV+PEEPELEALLRVSVEAGKGD+VYYLLHK
Sbjct: 296 RSYGPALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLLHK 355
Query: 483 LRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542
LRTSVRKVSPSTA++I +WF SK A+R+GK KW++ ++K+ + N GGGWHG GWLGKGKW
Sbjct: 356 LRTSVRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKGKW 415
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602
VS ++VG DA CK CG+KLA IDLDP ETE FAESVASIAIKRE++SSFQKFQKWLDYY
Sbjct: 416 TVSCSSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLDYY 475
Query: 603 GPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPV 662
GPFEAVVD ANVGL Q+ F P+++NA+ NGIRQK PSKKWPLIVLHNRR+TGHKMD+PV
Sbjct: 476 GPFEAVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDEPV 535
Query: 663 NRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRW 722
N++L+EKWK+ADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFP+W
Sbjct: 536 NKSLVEKWKHADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPKW 595
Query: 723 KERHQA 728
KERHQ
Sbjct: 596 KERHQV 601
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/539 (62%), Positives = 401/539 (74%), Gaps = 66/539 (12%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +L+ LDMCSKRGDVMGA+ LYD A EG+KLGQ+HY VLLYLCSSAAVGVV+PAKSG
Sbjct: 106 EVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSG 165
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
SG RTL+ S + S E+ N FD
Sbjct: 166 SGARTLN----SHVYSNEV------------------------PNEGTHFD--------- 188
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQ 369
LDG++ L +++ + DEI L SED K+YA Q
Sbjct: 189 -----------------LDGKAELNS-----------DLNSTEKDEILLVSEDVKRYALQ 220
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
RGFE+Y+ MCLD+V MNEA+LTAV RMAMSMGDGD AF+MV++MK LGI+PRLRSYGPAL
Sbjct: 221 RGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPAL 280
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
FCNNG++DKA +VE+HML+HGVYPEEPELEALLRVSV AG D+VYY+LHKLR+ VRK
Sbjct: 281 FTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRK 340
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
VSP+T+ +I WF SK+A+R+GK+KW+E LI++ +EN GGGWHG GWLGKGKW HTT+
Sbjct: 341 VSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTI 400
Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
G D +CKCC +L IDLDP+ETE FA+SVAS+A+ RE+ S+FQKFQKWLDY GPFEAVV
Sbjct: 401 GKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVV 460
Query: 610 DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEK 669
DAANVGL+ Q F P ++NAV N IRQ+ PSKK+PLI+LHN+RI G KMD+P+NRALI+K
Sbjct: 461 DAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDK 520
Query: 670 WKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQA 728
W NADALYATPTGSNDDWYWLYAAIKF+CLLVTNDEMRDH FQLLGNDFFP+WKERHQ
Sbjct: 521 WNNADALYATPTGSNDDWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQV 579
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/600 (60%), Positives = 436/600 (72%), Gaps = 36/600 (6%)
Query: 129 MSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDR 188
M G S L++ +K S+ D K++++ K + +EKG K K +
Sbjct: 1 MGDGISFLKTSTDSASLKVSR------DGGKIKEKR------KGNQVVEEKG-KLLKGNN 47
Query: 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248
F R LDMCSK GD +GAI+LY+ AQ+EGI L QYHY V+LYLCSSAA+GV++PAK
Sbjct: 48 ETPF--RANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCSSAALGVIQPAK 105
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
SG G +T + +S + S E N LD S + +Y +L ST N
Sbjct: 106 SGYGNQTSISLTLSKVGSYE--------NPIILDEQHSTKTSYVSKGGNYGRTEL-STEN 156
Query: 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368
++ N S+G ++D + N+ + K W +D + I + ED KKYA
Sbjct: 157 DRSN----SDG-------MMDNKENIFH-TNGSMVPKAWILDEKSHSNILVDEDFKKYAL 204
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ GFEIYEKMC + +PMNEA+LT+V RMAMSMGDGD AFDMVK+MK LG+NPRLRSYGPA
Sbjct: 205 ETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNPRLRSYGPA 264
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
LS FC NG ++KA SVE+HMLEHGVYPEEPEL ALLRVS+ A ++VYYLLHKLRTSVR
Sbjct: 265 LSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLLHKLRTSVR 324
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V PSTAD+I WF SK+AAR+GK K + +IK + N GGGWHGLGWLG+GKW VS T
Sbjct: 325 QVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRGKWSVSSTN 384
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VG D LCK CGEKLA IDLDPIETE FAESVA+I +RE+NSSFQKFQKWL+YYGPFEAV
Sbjct: 385 VGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLEYYGPFEAV 444
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGL+SQR F P++VN + NGIRQK PSKKWPLI+LHNRRITG KM++PVN+ LIE
Sbjct: 445 IDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEEPVNKTLIE 504
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQA 728
KWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTFQLLGNDFFPRWKERHQ
Sbjct: 505 KWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFPRWKERHQV 564
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/542 (59%), Positives = 387/542 (71%), Gaps = 60/542 (11%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 75 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 117
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 118 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 149
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 150 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 194
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 495 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 554
Query: 727 QA 728
Q
Sbjct: 555 QV 556
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/542 (59%), Positives = 387/542 (71%), Gaps = 60/542 (11%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 109 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 151
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 152 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 183
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD N I +SE K+Y
Sbjct: 184 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKDRDKRNG----IMVSEVVKEY 228
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528
Query: 667 IEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERH 726
+++W NA+ LYATPTGSNDDWYWLYAAIKFKCLLV+NDEMRDH FQLLGNDFFP+WKERH
Sbjct: 529 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 588
Query: 727 QA 728
Q
Sbjct: 589 QV 590
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa] gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 286/370 (77%), Positives = 329/370 (88%), Gaps = 3/370 (0%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
SED KKYA QRG EI+EKMC ++VP+NEA+LTAV RMAMS+G+GD+AF+MVK+M +LGI
Sbjct: 62 FSEDVKKYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEMVKQMDALGI 121
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
NP+LRSYGPALSVFC++GD+DKA VE+HMLEHGVYPEEPEL+ALLRVSVE GKGD+VYY
Sbjct: 122 NPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYY 181
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
LLHKLR VR+VSPSTA +I +WFNSK A+R+GK KW+ +K+ +EN GGGWHG GWLG
Sbjct: 182 LLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGGGWHGQGWLG 238
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
KGKW VS T+VG D +CK CG+KL IDLD +ETEKFAESVASIAIKR+R+SSFQ+FQKW
Sbjct: 239 KGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRDSSFQRFQKW 298
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
LDYYGPFEAV+D AN G+Y+Q F P+++NAVVNGIRQK PSKKWPLIVLHN+RITG KM
Sbjct: 299 LDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKM 358
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDF 718
D PVN+A IEKWKNADALYATPTGSNDDWYWLYAAIKFKCL+VTNDEMRDHTF LLGNDF
Sbjct: 359 DGPVNKAFIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFHLLGNDF 418
Query: 719 FPRWKERHQA 728
FPRWKERHQ
Sbjct: 419 FPRWKERHQV 428
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/566 (51%), Positives = 379/566 (66%), Gaps = 55/566 (9%)
Query: 168 GQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225
G + G KK KK ++ +LRVELDMCSKRGDVMGAI LYD A EGIKLG
Sbjct: 111 GNSRDEGTGRRNACKKMKKPPDGEYAGKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLG 170
Query: 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS--TELGDSRDMDNNGQLDY 283
Q+HYNVLLYLCSSA++G V+PAKSG+ M S +G ++ +D +
Sbjct: 171 QHHYNVLLYLCSSASLGFVQPAKSGN------------MGSGIASIGPAQKLDPSPSRSL 218
Query: 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343
G S + S S + ++ +N G +K +
Sbjct: 219 GGSEGDNAYASESHVQ--------DQGKNKADLIPGGLKAQTV----------------- 253
Query: 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMG 401
I + ++ YA RGFEI++KMC ++ V M+EA+LTA RMA+SMG
Sbjct: 254 ------------SIPVEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMG 301
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
D DMAF++VK+MK LG+ P+LRSYGPAL+ FCN+G+V+KA VE HMLE G+ PEE ELE
Sbjct: 302 DSDMAFEIVKQMKGLGLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELE 361
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
LLR SV +GD+VYYLLHK RT+VR+VS STA++ WF S A+++GK+KW+ I
Sbjct: 362 TLLRASVVGRRGDKVYYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIA 421
Query: 522 DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVAS 581
+EN GGGWHG GWLG+GKW V+H+ + + +C CGEKLAIIDLDP ETE FA VA
Sbjct: 422 KAIENNGGGWHGFGWLGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAK 481
Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSK 641
+AIKRER S+F+ FQKWL+ +GPFEAVVDAANVGL+S ++ ++VN+V + IR +F SK
Sbjct: 482 LAIKRERKSNFENFQKWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSK 541
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLV 701
KWPLIVLHN+ + G +M + + L++KWK +++YATPTGSNDDWYWLYAAI+ KCL++
Sbjct: 542 KWPLIVLHNKHLIGERMKKLNDHKLVQKWKQENSIYATPTGSNDDWYWLYAAIRCKCLII 601
Query: 702 TNDEMRDHTFQLLGNDFFPRWKERHQ 727
TNDEMRDHTFQ+L +FFP+WKERHQ
Sbjct: 602 TNDEMRDHTFQILERNFFPKWKERHQ 627
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115445507|ref|NP_001046533.1| Os02g0273800 [Oryza sativa Japonica Group] gi|47848046|dbj|BAD21831.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|113536064|dbj|BAF08447.1| Os02g0273800 [Oryza sativa Japonica Group] gi|215697065|dbj|BAG91059.1| unnamed protein product [Oryza sativa Japonica Group] gi|326324779|dbj|BAJ84577.1| P0413A11.14-1 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 299/539 (55%), Positives = 378/539 (70%), Gaps = 52/539 (9%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +LRVELDMCSKRGDV+GAI LYD A +EGIK+GQ+HY+VLLYLCSSAA+G V+PAKSG
Sbjct: 177 EVKLRVELDMCSKRGDVIGAINLYDSAVKEGIKMGQHHYSVLLYLCSSAALGFVQPAKSG 236
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+ + + GQL S+ + LE DD+
Sbjct: 237 NAGSGIASI-------------------GQLHSSSTQSVGNLEG------DDVQ------ 265
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
S GH S+ +G DD + K I +S++ ++YA R
Sbjct: 266 ------SEGH----SEDQEGNKTDLFASDDGTEK---------PSRIPVSDELREYARTR 306
Query: 371 GFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
GFEI+EKM +E VPMNE++LTAV RMAMSMG+GDMAFD+VK+MK GI P+LRSYGPA
Sbjct: 307 GFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGPA 366
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L+ FCN+G+V+KA VE HMLE GV PEEPELE LL+ SV A +GD+VYYLLHK RT+VR
Sbjct: 367 LTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTVR 426
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+ S +TA ++ WF S A+++GK+KW+ I +EN GGGWHGLGWLG+GKW +SH+
Sbjct: 427 QASSTTAKLLEDWFQSPTASKVGKRKWDSGAITKAIENNGGGWHGLGWLGRGKWTISHSH 486
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
+ + C CGEKL IIDLDP ETE FA VA +AIKRER S+F FQKWL+ +GPF+AV
Sbjct: 487 IDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDAV 546
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
VD ANVGL+S ++ +++N V + IRQ+F S+K PLIV+HNR +TG +M +P NR L+E
Sbjct: 547 VDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLVE 606
Query: 669 KWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQ 727
KWK ++A+YATPTGSNDDWYWLYAAI+ KCL+VTNDEMRDHTFQLL DFFP+WKERHQ
Sbjct: 607 KWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKERHQ 665
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 732 | ||||||
| TAIR|locus:2045432 | 572 | PRORP1 "proteinaceous RNase P | 0.506 | 0.648 | 0.514 | 1.1e-120 | |
| TAIR|locus:2059824 | 528 | PRORP2 "proteinaceous RNase P | 0.491 | 0.681 | 0.422 | 7.2e-88 | |
| TAIR|locus:2141662 | 576 | PRORP3 "AT4G21900" [Arabidopsi | 0.491 | 0.625 | 0.422 | 1.5e-85 | |
| TAIR|locus:2175178 | 156 | AT5G60430 [Arabidopsis thalian | 0.107 | 0.506 | 0.413 | 4.6e-12 | |
| RGD|1305089 | 587 | RGD1305089 "similar to 1110008 | 0.243 | 0.303 | 0.246 | 2.4e-06 | |
| MGI|MGI:1913382 | 584 | 1110008L16Rik "RIKEN cDNA 1110 | 0.243 | 0.304 | 0.241 | 3e-06 | |
| UNIPROTKB|O15091 | 583 | KIAA0391 "Mitochondrial ribonu | 0.243 | 0.305 | 0.241 | 4.7e-06 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.427 | 0.496 | 0.229 | 5.1e-05 | |
| TAIR|locus:2065428 | 559 | AT2G01740 "AT2G01740" [Arabido | 0.163 | 0.214 | 0.258 | 0.00019 | |
| TAIR|locus:2197424 | 664 | EMB3103 "EMBRYO DEFECTIVE 3103 | 0.166 | 0.183 | 0.237 | 0.0006 |
| TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1015 (362.4 bits), Expect = 1.1e-120, Sum P(2) = 1.1e-120
Identities = 191/371 (51%), Positives = 253/371 (68%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + +
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFF 719
P NRAL+EKWKNA ALYATP GSNDDWYWLYAA+ KCLLVTNDEMRDH FQLLGN FF
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFF 508
Query: 720 PRWKERHQASV 730
PRWKE+HQ +
Sbjct: 509 PRWKEKHQVRI 519
|
|
| TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
Identities = 159/376 (42%), Positives = 228/376 (60%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G ++ PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T +I +WF ++A +G ++++ + N
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 447
Query: 712 QLLGNDFFPRWKERHQ 727
+LLG+ FF +WKERHQ
Sbjct: 448 ELLGSTFFQKWKERHQ 463
|
|
| TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.5e-85, Sum P(2) = 1.5e-85
Identities = 159/376 (42%), Positives = 224/376 (59%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G ++ PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T+ I +WF +A+ + L++ +
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NS-----SFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R+ NS F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTF 711
R+ ++ P +R L+E+W N + LYATP GSNDDWYWLYAA K KCLLVTNDEMRDH F
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIF 506
Query: 712 QLLGNDFFPRWKERHQ 727
+LL N FF +WKERHQ
Sbjct: 507 ELLSNSFFQKWKERHQ 522
|
|
| TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NSS-----FQKF 595
IV V C C E+LA +D + +ET+KF +S+ ++A++R+ NS F +F
Sbjct: 25 IVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEF 84
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
Q WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 85 QDWLEKHGDYEAIVDGANIGLY-QQNF 110
|
|
| RGD|1305089 RGD1305089 "similar to 1110008L16Rik protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 2.4e-06, Sum P(3) = 2.4e-06
Identities = 48/195 (24%), Positives = 81/195 (41%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TT+ C CG + I L P E E E++ I K+ ++F++++
Sbjct: 340 TTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + + GI + + L+VL + + Q
Sbjct: 400 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGIVSQLAQQNLQLLVLGRKHML-RPSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQL---LG 715
+ + K A +A S DD + LYA + C +T D +RDH L
Sbjct: 455 WRKDEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGSHCKFITKDLLRDHKACLPDARA 513
Query: 716 NDFFPRWKERHQASV 730
F +W++ HQ ++
Sbjct: 514 QRLFFKWQQGHQLAI 528
|
|
| MGI|MGI:1913382 1110008L16Rik "RIKEN cDNA 1110008L16 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 47/195 (24%), Positives = 80/195 (41%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TT+ C CG + I L P E E E + I K+ ++F+ +++
Sbjct: 337 TTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVN 396
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + + G+ + + L+VL + + Q
Sbjct: 397 SCPPFDIVIDGLNVA----KMFPKGRESQNLLGVVSQLAQQNLQLLVLGRKHML-RPSSQ 451
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG--- 715
+ + K A +A S DD + LYA + C +T D +RDH L
Sbjct: 452 WRKEEMEQVRKQAHCFFADNI-SEDDPFLLYATLNSGNHCKFITKDLLRDHKACLPDART 510
Query: 716 NDFFPRWKERHQASV 730
F +W++ HQ ++
Sbjct: 511 QRLFFKWQQGHQLAI 525
|
|
| UNIPROTKB|O15091 KIAA0391 "Mitochondrial ribonuclease P protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 47/195 (24%), Positives = 80/195 (41%)
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI------KRERNSSFQKFQKWLD 600
TTV C CG+ + I L P E E + I ++ ++F+ ++
Sbjct: 340 TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKRFENFIK 399
Query: 601 YYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQ 660
PF+ V+D NV + F R + ++ + + + L+VL + + + Q
Sbjct: 400 SRPPFDVVIDGLNVA----KMFPKVRESQLLLNVVSQLAKRNLRLLVLGRKHML-RRSSQ 454
Query: 661 PVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKF--KCLLVTNDEMRDHTFQLLG--- 715
+ E K A +A S DD + LYA + C +T D MRDH L
Sbjct: 455 WSRDEMEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKACLPDAKT 513
Query: 716 NDFFPRWKERHQASV 730
F +W++ HQ ++
Sbjct: 514 QRLFFKWQQGHQLAI 528
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 80/349 (22%), Positives = 154/349 (44%)
Query: 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCS----SAAVGVVKPAKSGSGMR 254
+C KRGD A L +K ++ ++ G YN ++ LC A+ + K ++ G+R
Sbjct: 231 LC-KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET-KGIR 288
Query: 255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
+ S++ S R D + L S MI++ + + F L F ++ L
Sbjct: 289 P-NVVTYSSLISCLCNYGRWSDASRLL----SDMIERKINPDVFTFSALIDAFVKEGKLV 343
Query: 315 QFSNGHMKLNSQLLDGR----SNLERG---PD--DQSRKK-DWSIDNQDADEI----RLS 360
+ + ++ + +D S+L G D D++++ ++ + ++ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 361 EDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+ KY + G E++ +M + N + + + GD DMA ++ K M S G+
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P + +Y L C NG ++KA V E++ + P ++ +AGK + + L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAA--RLGKKKWNESLIKDTMEN 526
L S++ V P DV+A +N+ + R G K+ ++L K+ E+
Sbjct: 524 FCNL--SLKGVKP---DVVA--YNTMISGFCRKGSKEEADALFKEMKED 565
|
|
| TAIR|locus:2065428 AT2G01740 "AT2G01740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00019, P = 0.00019
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 245 KKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDIT 304
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HKL
Sbjct: 305 AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
|
|
| TAIR|locus:2197424 EMB3103 "EMBRYO DEFECTIVE 3103" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00016721001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (756 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 732 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G D A ++ + + I
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ GD D A S+ + M + GV P+E AL+ V+ AG D+ + +L R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 485 TS 486
Sbjct: 677 KQ 678
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 25/113 (22%), Positives = 48/113 (42%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
IY+ M V +E +A+ +A GD D AF++++ + GI SY +
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
N + KA + E + + P + AL+ E + + +L +++
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
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Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
L +Y L GD D A +V E M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PF11977 | 155 | RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai | 99.83 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.68 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.57 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.43 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.43 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.04 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.77 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.66 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.44 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.44 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.42 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.41 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.33 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.26 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.13 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.05 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.91 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.88 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.87 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.84 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.65 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.5 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.47 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.34 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.31 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.18 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.12 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.06 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.03 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 96.96 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.94 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.9 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.84 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.83 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.83 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.83 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.81 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.78 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.65 | |
| KOG3777 | 443 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.32 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.28 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.28 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.26 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.23 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.21 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.2 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.17 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.16 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.12 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 95.97 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.89 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 95.78 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.68 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.6 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 95.53 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 95.47 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 95.3 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 95.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.17 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 94.92 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.83 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 94.81 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 94.72 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 94.63 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.57 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 94.52 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.19 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 94.17 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.02 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.01 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 93.87 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 93.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 93.81 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 93.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 93.73 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 93.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 93.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 93.21 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 93.19 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 93.15 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 93.02 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.96 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 92.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.83 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 92.79 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 92.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 92.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.71 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 92.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 92.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.63 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 92.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 92.39 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 91.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.4 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 91.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 91.18 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 90.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 90.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 90.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 90.31 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 90.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 90.1 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.83 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 89.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 89.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 89.43 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 89.04 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 89.0 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 88.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 88.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 88.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 88.07 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 87.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 87.56 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.38 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 87.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 86.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 86.4 | |
| PF14626 | 122 | RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN dom | 86.2 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 85.91 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 85.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 84.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 84.76 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 84.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 83.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 82.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 81.8 | |
| PLN02789 | 320 | farnesyltranstransferase | 81.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 81.45 | |
| PF05991 | 166 | NYN_YacP: YacP-like NYN domain; InterPro: IPR01029 | 81.11 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 81.1 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 80.58 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 80.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 80.31 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 80.24 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=488.74 Aligned_cols=432 Identities=13% Similarity=0.145 Sum_probs=263.6
Q ss_pred cchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCC-----------------------------CCCCcHHHHHH
Q 004743 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSK-----------------------------KDRSEQFQLRV 196 (732)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~-----------------------------~~~p~~~tyn~ 196 (732)
+...+||..+. .+++.++.++|+++|++|.+.|..|+. ++.||.++||+
T Consensus 435 pd~~Tyn~LL~--a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMS--VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34445555555 445555555555555555555544432 33444466666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc-CCC
Q 004743 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDM 275 (732)
Q Consensus 197 lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~-~g~ 275 (732)
||++|++.|++++|+++|++|...|+.||.+|||+||.+|+ +.|++++|.++|. +|... .|+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi 575 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPI 575 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCC
Confidence 66666666666666666666666666666666666666666 6666666666663 55432 244
Q ss_pred C-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCC
Q 004743 276 D-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSI 349 (732)
Q Consensus 276 ~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~p 349 (732)
. |.++||+||.+ |++.|++++|.++|++|.+.|+.|+.++|+ .+|++|+ ++|..+|++|...|+.|
T Consensus 576 ~PD~vTynaLI~a------y~k~G~ldeA~elf~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 576 DPDHITVGALMKA------CANAGQVDRAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred CCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 4 56666666666 666666666666666666666666666666 6666666 45555666777677777
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
|.++|++ ||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||
T Consensus 648 D~~Tyns-LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 648 DEVFFSA-LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777766 667777777777777777777777777777777777777777777777777777776666777777777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHhchHHHH
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAAR 509 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~I~~~~~~~~~~~ 509 (732)
.+||+.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|.+|.+.+..++..+|+.|.++|... ..+
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~-y~k 805 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR-FEK 805 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHH
Confidence 7777777777777777777767777777777777777777777777777777776663333333666655554421 111
Q ss_pred hccc-----cchh-------HHHHHHHhhcCCCccccccCCCceeEEEEeeecCCCccCcccccccc-----ccCCH--H
Q 004743 510 LGKK-----KWNE-------SLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI-----IDLDP--I 570 (732)
Q Consensus 510 a~~~-----~~~~-------~~v~ea~~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~~-----i~l~~--~ 570 (732)
++.. .|+. .-..+|+. +|++|...|+.|+.+||..++ .+.|...+..+.. +.+.+ .
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~----lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALM----VYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHH----HHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCc
Confidence 1100 0110 11233444 789999999999999996666 5555544432211 11111 1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHhhcCCccccccccc
Q 004743 571 ETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAAN 613 (732)
Q Consensus 571 e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~v~d~~n 613 (732)
....+...|-+. ....++++..|.++...+-.+++.-+-..
T Consensus 881 ~~~~y~~Li~g~--~~~~~~A~~l~~em~~~Gi~p~~~~~~~~ 921 (1060)
T PLN03218 881 KQSNLSTLVDGF--GEYDPRAFSLLEEAASLGVVPSVSFKKSP 921 (1060)
T ss_pred chhhhHHHHHhh--ccChHHHHHHHHHHHHcCCCCCcccccCc
Confidence 111222222221 11234789999999999877777754443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=488.05 Aligned_cols=345 Identities=14% Similarity=0.156 Sum_probs=299.2
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.+.+.+...+|+.+|+.|. .||..+||.+|.+|++.|+++.|+++|++|++.|+.||..+||+||.+|+
T Consensus 415 ~~~~~g~~~eAl~lf~~M~----------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~- 483 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIR----------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA- 483 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcC----------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Confidence 4567788999999999992 27889999999999999999999999999999999999999999999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
+.|++++|.++|+ +|.+. |+. |.+|||+||.+ |++.|++++|.++|++|.+.|+.|
T Consensus 484 ---------k~G~vd~A~~vf~-------eM~~~-Gv~PdvvTynaLI~g------y~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 484 ---------KSGKVDAMFEVFH-------EMVNA-GVEANVHTFGALIDG------CARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred ---------hCcCHHHHHHHHH-------HHHHc-CCCCCHHHHHHHHHH------HHHCcCHHHHHHHHHHHHHcCCCC
Confidence 8999999999994 78776 777 88999999999 999999999999999999999999
Q ss_pred Cccccchhhhhhccc-----cccCCCchhhhc--cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 004743 318 NGHMKLNSQLLDGRS-----NLERGPDDQSRK--KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (732)
Q Consensus 318 d~~ty~~~~li~~~~-----~~a~~~~~~m~~--~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (732)
|.+||+ .+|.+++ +.|..+|.+|.. .|+.||.++||+ ||++|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 541 D~vTYn--sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna-LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 541 DRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA-LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999 9999988 567779999975 688999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
|+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHhccccchhHHHHHHHhhcCCCccccccCCCceeEEEEeee
Q 004743 471 GKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~vt~t~v 549 (732)
|++++|.++|++|.+.+..|+..+|++ |.++|+.+...+|. .+|.+|...|+.|+.++| +.
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl-----------------elf~eM~~~Gi~Pd~~Ty-~s 759 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL-----------------EVLSEMKRLGLCPNTITY-SI 759 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH-----------------HHHHHHHHcCCCCCHHHH-HH
Confidence 999999999999988833333338888 88888888876555 255556666666666666 33
Q ss_pred cCCCccCcc
Q 004743 550 GGDALCKCC 558 (732)
Q Consensus 550 ~~~G~C~~c 558 (732)
++.++|+.+
T Consensus 760 LL~a~~k~G 768 (1060)
T PLN03218 760 LLVASERKD 768 (1060)
T ss_pred HHHHHHHCC
Confidence 334555444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=447.79 Aligned_cols=412 Identities=12% Similarity=0.032 Sum_probs=311.8
Q ss_pred hhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004743 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (732)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (732)
.+||..+. .+.+.++.++|+++|++|...|+ .||.+||+++|.+|++.+++..+.+++..|.+.|+.||..+
T Consensus 153 ~~~n~li~--~~~~~g~~~~A~~~f~~M~~~g~------~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 153 FSWNVLVG--GYAKAGYFDEALCLYHRMLWAGV------RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred eEHHHHHH--HHHhCCCHHHHHHHHHHHHHcCC------CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 34444444 44445555555555555533322 22335555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHH
Q 004743 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (732)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (732)
||+||.+|+ ++|++++|..+|+ +|... |.++||+||.+ |++.|++++|.++|+
T Consensus 225 ~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 225 VNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLELFF 277 (857)
T ss_pred HhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHHHHH
Confidence 555555555 9999999999996 56543 88999999999 999999999999999
Q ss_pred HHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Q 004743 309 EKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (732)
+|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||..+||+ ||++|++.|++++|.++|++|.
T Consensus 278 ~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 278 TMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH-HHHHHHhcCCHHHHHHHHhhCC----
Confidence 999999999999999 9999887 556779999999999999999999 9999999999999999999996
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+||+|
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHhccc------cc--hh---HHHHHHHhhc----
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKK------KW--NE---SLIKDTMENK---- 527 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~------~~--~~---~~v~ea~~~~---- 527 (732)
|++|++.|++++|.++|++|.+. ...+|+. |.++++.+...+|..- .. +. ..+..+..+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHH
Confidence 99999999999999999999653 2337777 7778777665544310 00 00 0000000000
Q ss_pred --CCCccccccCCCceeEEEEeeecCCCccCccccccc--cccCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhhcC
Q 004743 528 --GGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA--IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYG 603 (732)
Q Consensus 528 --g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~--~i~l~~~e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~~~ 603 (732)
.+++..|...|+.++...+ +.+++++|+++...-+ .++-.+.+...|...|..++.+|...++++.|++|.+.+.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HhHHHHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1134456667777777777 6677788877754322 2211134556788889999999999999999999998865
Q ss_pred Cccc
Q 004743 604 PFEA 607 (732)
Q Consensus 604 pyD~ 607 (732)
.+|.
T Consensus 586 ~Pd~ 589 (857)
T PLN03077 586 NPDE 589 (857)
T ss_pred CCCc
Confidence 4444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=445.29 Aligned_cols=390 Identities=11% Similarity=0.014 Sum_probs=290.9
Q ss_pred ccchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 145 IKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (732)
Q Consensus 145 ~~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p 224 (732)
.....++|..+. ...+.++.++|.++|++| ..||.++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 155 ~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m----------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 155 EPDQYMMNRVLL--MHVKCGMLIDARRLFDEM----------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred CcchHHHHHHHH--HHhcCCCHHHHHHHHhcC----------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 345667777776 777888888999999988 23677999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHH
Q 004743 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (732)
Q Consensus 225 d~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (732)
|..||+++|.+|+ +.|..+.+.+++. .+.+. |+. |.++||+||++ |++.|++++|
T Consensus 223 ~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~~~~A 278 (697)
T PLN03081 223 EPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGDIEDA 278 (697)
T ss_pred ChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCCHHHH
Confidence 9999999999998 6777777777774 44444 666 77778888888 8888888888
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHH
Q 004743 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (732)
Q Consensus 304 ~~lf~eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M 378 (732)
.++|++|.. ||+++|| .++.+|+ ++|..+|.+|...|+.||.+||++ +|.+|++.|++++|.+++++|
T Consensus 279 ~~vf~~m~~----~~~vt~n--~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 279 RCVFDGMPE----KTTVAWN--SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI-MIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHhCCC----CChhHHH--HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhccchHHHHHHHHHH
Confidence 888888853 5788888 7777777 556678888888888888888888 888888888888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 379 ~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
.+.|+.||..+||+||++|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 888888888888888888888888888888888875 3688888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCCChhHHHH-HHHHHhchHHHHhccccchhHHHHHHHhhcCCCcccccc
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~-~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~ 536 (732)
||+++|.+|++.|++++|.++|++|.+ .+..|...+|++ |..+++.|...+|. . ++.+|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~-------------~----~~~~~-- 488 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY-------------A----MIRRA-- 488 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH-------------H----HHHHC--
Confidence 888888888888888888888888865 322233337776 77777776654443 1 23333
Q ss_pred CCCceeEEEEeeecCCCccCccccccc------cccCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhhc
Q 004743 537 LGKGKWIVSHTTVGGDALCKCCGEKLA------IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYY 602 (732)
Q Consensus 537 ~g~~p~~vt~t~v~~~G~C~~c~~~L~------~i~l~~~e~~~l~~~i~~~a~~~~~~~~~~~F~~~l~~~ 602 (732)
++.|+..+| +.+..+.|..+...+. .+.+.++....+...+..++..|.-.++.+.|+.|.+++
T Consensus 489 -~~~p~~~~~-~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 489 -PFKPTVNMW-AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred -CCCCCHHHH-HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 456777776 4455555554443221 123333333334444445566676677788888888776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=435.96 Aligned_cols=390 Identities=12% Similarity=0.070 Sum_probs=283.6
Q ss_pred hhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 004743 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (732)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (732)
.++|..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..+
T Consensus 88 ~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 88 VSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred eeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 34566665 6778899999999999996433 3457779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHH
Q 004743 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (732)
Q Consensus 229 yn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (732)
||.||.+|+ ++|++++|.++|+ +|.+. |+++||+||.+ |++.|++++|.++|+
T Consensus 161 ~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----~~~t~n~li~~------~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 161 MNRVLLMHV----------KCGMLIDARRLFD-------EMPER----NLASWGTIIGG------LVDAGNYREAFALFR 213 (697)
T ss_pred HHHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CeeeHHHHHHH------HHHCcCHHHHHHHHH
Confidence 999999999 9999999999995 66543 89999999999 999999999999999
Q ss_pred HHHHcCCCCCccccc---------------------------------hhhhhhccc-----cccCCCchhhhccCCCCC
Q 004743 309 EKENLGQFSNGHMKL---------------------------------NSQLLDGRS-----NLERGPDDQSRKKDWSID 350 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~---------------------------------~~~li~~~~-----~~a~~~~~~m~~~g~~pd 350 (732)
+|.+.|+.||..||+ ...++++|+ +.|..+|++|.. +|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~ 289 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KT 289 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 999998888887776 013444444 445556666653 46
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
+++||+ ||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||+
T Consensus 290 ~vt~n~-li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~ 368 (697)
T PLN03081 290 TVAWNS-MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368 (697)
T ss_pred hhHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHH
Confidence 777777 7777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHH
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAAR 509 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~ 509 (732)
+|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.+..|+..||.. |.++++.|..
T Consensus 369 ~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~-- 442 (697)
T PLN03081 369 LYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS-- 442 (697)
T ss_pred HHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH--
Confidence 7777777777777777775 46777777777777777777777777777777733333336666 4555444443
Q ss_pred hccccchhHHHHHHHhhcCCCcccccc-CCCceeEEEEeeecCCCccCccccccc--cc---cCCHHHHHHHHHHHHHHH
Q 004743 510 LGKKKWNESLIKDTMENKGGGWHGLGW-LGKGKWIVSHTTVGGDALCKCCGEKLA--II---DLDPIETEKFAESVASIA 583 (732)
Q Consensus 510 a~~~~~~~~~v~ea~~~~g~~~~~m~~-~g~~p~~vt~t~v~~~G~C~~c~~~L~--~i---~l~~~e~~~l~~~i~~~a 583 (732)
+++.. +|+.|.. .|+.|+..+| +.+++++|+.+...-+ .+ .+.+ +...|...+....
T Consensus 443 -----------~~a~~----~f~~m~~~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~~~Ll~a~~ 505 (697)
T PLN03081 443 -----------EQGWE----IFQSMSENHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKP-TVNMWAALLTACR 505 (697)
T ss_pred -----------HHHHH----HHHHHHHhcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Confidence 33333 6777764 5788888777 6666777776653211 11 1111 1122444444444
Q ss_pred HhhccchhHHHHHHHHh
Q 004743 584 IKRERNSSFQKFQKWLD 600 (732)
Q Consensus 584 ~~~~~~~~~~~F~~~l~ 600 (732)
.++....+...+++.++
T Consensus 506 ~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 506 IHKNLELGRLAAEKLYG 522 (697)
T ss_pred HcCCcHHHHHHHHHHhC
Confidence 55555555555555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=433.50 Aligned_cols=345 Identities=12% Similarity=0.040 Sum_probs=280.6
Q ss_pred cchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004743 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (732)
Q Consensus 146 ~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd 225 (732)
+...+||..+. .+.+.++..+|+++|++|.+.|+.| |.+||+++|.+|++.|+++.|.+++..|.+.|+.||
T Consensus 251 ~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g~~P------d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 251 RDCISWNAMIS--GYFENGECLEGLELFFTMRELSVDP------DLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 34455666666 6667777777777777776555443 337777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHH
Q 004743 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDS 305 (732)
Q Consensus 226 ~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~ 305 (732)
..+||+||.+|+ ++|++++|.++|+ +|... |.++||+||.+ |++.|++++|.+
T Consensus 323 ~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~~----d~~s~n~li~~------~~~~g~~~~A~~ 375 (857)
T PLN03077 323 VSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMETK----DAVSWTAMISG------YEKNGLPDKALE 375 (857)
T ss_pred hHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCCC----CeeeHHHHHHH------HHhCCCHHHHHH
Confidence 777777777777 8999999999995 56543 88999999999 999999999999
Q ss_pred HHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHh
Q 004743 306 TFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (732)
Q Consensus 306 lf~eM~~~gi~Pd~~ty~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~ 380 (732)
+|++|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||..+||+ ||++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH-HHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999 9999887 566779999999999999999999 99999999999999999999974
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004743 381 DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (732)
Q Consensus 381 ~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (732)
+|.++||+||.+|++.|+.++|.++|++|.. ++.||..||+++|.+|++.|+++.+.+++..|.+.|+.+|..++
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 6788999999999999999999999999975 58899999999999999999999999999988888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHhccccchhHHHHHHHhhcCCCccccccCCC
Q 004743 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539 (732)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~ 539 (732)
|+||++|++.|++++|.++|++| .++..+|++ |.++++.|...+|. . +|++|...|+
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~-------------~----lf~~M~~~g~ 585 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAV-------------E----LFNRMVESGV 585 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHH-------------H----HHHHHHHcCC
Confidence 88888888888888888888877 223447777 77777776654444 2 7777888888
Q ss_pred ceeEEEEeeecCCCccC
Q 004743 540 GKWIVSHTTVGGDALCK 556 (732)
Q Consensus 540 ~p~~vt~t~v~~~G~C~ 556 (732)
.||.+||.. +..++|.
T Consensus 586 ~Pd~~T~~~-ll~a~~~ 601 (857)
T PLN03077 586 NPDEVTFIS-LLCACSR 601 (857)
T ss_pred CCCcccHHH-HHHHHhh
Confidence 888888843 3344343
|
|
| >PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-21 Score=186.00 Aligned_cols=119 Identities=29% Similarity=0.422 Sum_probs=91.2
Q ss_pred ccccccceecc--cCCCCChhhHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHHcCceeeCCCCCC
Q 004743 607 AVVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSN 684 (732)
Q Consensus 607 ~v~d~~nv~~~--~~~~~~~~~i~~vv~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 684 (732)
|||||+|||+. .+..|++.+|..+|++|++ +|+.+++|++..+........+.+.+.+++|.+.+.++.||++++
T Consensus 5 VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~~ 81 (155)
T PF11977_consen 5 VVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGSN 81 (155)
T ss_dssp EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEEE
T ss_pred EEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCCC
Confidence 89999999853 2335999999999999999 788888888766533223356778899999999999999999997
Q ss_pred --------chHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 685 --------DDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 685 --------DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
||||||++|.+.+|+|||||+||||.+ ....|.+|.++|+|+|+
T Consensus 82 ~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~t 133 (155)
T PF11977_consen 82 YGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFT 133 (155)
T ss_dssp TTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--E
T ss_pred CCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEE
Confidence 999999999999999999999999999 56689999999999985
|
It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.7e-15 Score=162.10 Aligned_cols=276 Identities=15% Similarity=0.042 Sum_probs=206.0
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd---~~tyn~LL~~~~~ 238 (732)
..++.++|...|+++.+.. +.+..+|..+...+.+.|++++|..+++.+...+-.++ ...+..|...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 5578889999999996542 22446889999999999999999999999997643332 256778888888
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
+.|++++|..+|. ++.+. ...+..+++.++.. +.+.|++++|..+|+.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55543 22256679999999 9999999999999999987642221
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
.... ...|.. +...+.+.|++++|...|+++.+.. +.+...+..+...|.
T Consensus 176 ~~~~----------------------------~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 176 RVEI----------------------------AHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred hHHH----------------------------HHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 1100 001223 5667778888999999998887653 334567778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (732)
+.|++++|.++|+++...+-.....+++.+..+|++.|+.++|.+.++.+.+. .|+...+..+...+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 89999999999988876532222456788888888999999999988888775 4676777888888888899999999
Q ss_pred HHHHHHhccCCCChhHHHH-HHHHH
Q 004743 479 LLHKLRTSVRKVSPSTADV-IAKWF 502 (732)
Q Consensus 479 l~~~M~~~~~~~~p~t~~~-I~~~~ 502 (732)
+|+++.+. .|...++.. +..++
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhh
Confidence 98887766 555445554 44443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=150.74 Aligned_cols=269 Identities=12% Similarity=0.073 Sum_probs=212.7
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.....++.++|..+++.+...+ ..........|..+...|.+.|+++.|+.+|+++.+.. +++..+++.+...|.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~- 152 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQ- 152 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHH-
Confidence 3447789999999999986532 11011123578899999999999999999999998752 456789999999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc-----cccccccccccccccccccCChhHHHHHHHHHHHc
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN-----GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~-----~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (732)
+.|++++|.+.+. .+... +..+. ..|..+... +.+.|++++|..+|+++.+.
T Consensus 153 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 153 ---------QEKDWQKAIDVAE-------RLEKL-GGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred ---------HhchHHHHHHHHH-------HHHHh-cCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 8899999999995 44443 22211 124556666 78899999999999999775
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 314 gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
. |+.. ..+.. +...|.+.|++++|.++|+++...+......+++.+
T Consensus 210 ~--p~~~-------------------------------~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 210 D--PQCV-------------------------------RASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred C--cCCH-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 2 3321 12223 778899999999999999999976433335678999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---c
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---A 470 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~ 470 (732)
+.+|++.|++++|...++++.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++. .
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999999999876 477777889999999999999999999998876 6999999999998875 5
Q ss_pred CChHHHHHHHHHHHhccCCCChh
Q 004743 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|+.+++..+|++|.+....+.|+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999885556664
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-11 Score=144.96 Aligned_cols=283 Identities=12% Similarity=-0.019 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|..+..+|.+.|++++|+..|+.+.+.. +.+...+..+...|. +.|+.++|...+. .+..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455555555555566666666665555432 223444555555555 5566666666663 2222
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhcc-----ccccCCCchhhhccC
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR-----SNLERGPDDQSRKKD 346 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~-----~~~a~~~~~~m~~~g 346 (732)
. ...+..+|..+... +...|++++|..+++.|.+... ++...+. .+...+ -..|...+..+...
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~- 732 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKR- 732 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 1 11144456666666 6666677777777766665542 2222222 111111 13444455555543
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
.|+..++.. +...+.+.|+.++|.+.++++.... +.+..+++.+...|...|+.++|.++|+++.+.. +.+...++
T Consensus 733 -~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 733 -APSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred -CCCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 244445555 6677777777777777777777653 4566777777777777888888888887777653 34566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-hhHHH-HHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTAD-VIAKWFNS 504 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~-p~t~~-~I~~~~~~ 504 (732)
.+...+.+.|+ .+|.++++.+.+.. .-+..++..+...+...|++++|..+|+++.+. .+. +.++. ....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 77777777777 77777777776542 223445566777778888888888888888876 443 33443 36666766
Q ss_pred hHHHHhc
Q 004743 505 KEAARLG 511 (732)
Q Consensus 505 ~~~~~a~ 511 (732)
|...+|.
T Consensus 885 g~~~~A~ 891 (899)
T TIGR02917 885 GRKAEAR 891 (899)
T ss_pred CCHHHHH
Confidence 6655444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-11 Score=143.16 Aligned_cols=310 Identities=11% Similarity=0.009 Sum_probs=215.1
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|.+.|+.+.+... + +...+..++..+.+.|++++|+++++.+... .+++..+|..+...|.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 476 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDP--E-----LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL-- 476 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCC--c-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--
Confidence 3466788888888888754321 1 1245566778888888888888888888754 3456778888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|+.++|...|. ++... ...+...+..+... +...|++++|..+|+++.... +.+.
T Consensus 477 --------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~-~~~~ 533 (899)
T TIGR02917 477 --------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTID-PKNL 533 (899)
T ss_pred --------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhC-cCcH
Confidence 7788888888884 33332 22244446666677 788888888888888887654 1233
Q ss_pred cccchhhhhhcc-----ccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004743 320 HMKLNSQLLDGR-----SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (732)
Q Consensus 320 ~ty~~~~li~~~-----~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI 394 (732)
.++. .+...+ .+.|...+..+...+ ..+...+.. +...|.+.|++++|.++++++.... +.+..+|..+.
T Consensus 534 ~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 534 RAIL--ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA-LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH-HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 3333 222222 244455555554432 223344445 7888888999999999999887643 55778888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
.+|...|++++|...|+.+.+.. +.+...+..+...|.+.|+.++|..+++.+.+.. ..+..++..+...+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998887653 3356678888888888999999999998887653 345778888888889999999
Q ss_pred HHHHHHHHHHhccCCCChh-HHHH-HHHHHhchHHHHhc
Q 004743 475 RVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~p~-t~~~-I~~~~~~~~~~~a~ 511 (732)
+|..+++.+... .+... .+.. ...++..+...++.
T Consensus 687 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 687 SAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHH
Confidence 999999988876 43333 4443 44555565554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=99.61 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
||+++||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-12 Score=98.07 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=49.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004743 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (732)
Q Consensus 420 pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (732)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999986
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-10 Score=118.96 Aligned_cols=290 Identities=13% Similarity=0.049 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCccc-------------------CCCCChh
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP-------------------AKSGSGM 253 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~-------------------~k~g~~~ 253 (732)
+=|.|+. ....|.+..+.-+|+.|..+|+..+...--.|+...|--+.-.+.+ =|.|.+.
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 4455554 4567899999999999999999999888888887766322110000 0333332
Q ss_pred hHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccc-
Q 004743 254 RTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS- 332 (732)
Q Consensus 254 ~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~- 332 (732)
+ -+|. ..- +..-||.+||.| +|+--.++.|.++++|-.+...+-+..+|| .+|.+-+
T Consensus 197 d--L~~E--------~~P----KT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN--~lI~~~S~ 254 (625)
T KOG4422|consen 197 D--LLFE--------TLP----KTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN--GLIGASSY 254 (625)
T ss_pred H--HHHh--------hcC----CCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--hhhhHHHh
Confidence 2 2221 111 166789999999 999999999999999999998899999999 8887766
Q ss_pred cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 004743 333 NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM-AF 407 (732)
Q Consensus 333 ~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~-A~ 407 (732)
...+.+..+|.+..+.||..|+|+ ++++..+.|+++. |.+++.+|++-|+.|...+|.-+|..+++.++..+ |.
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 455779999999999999999999 9999999997654 56889999999999999999999999999888743 44
Q ss_pred HHHHHHHHc----CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhcCC
Q 004743 408 DMVKRMKSL----GINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE---PELEALLRVSVEAGK 472 (732)
Q Consensus 408 ~l~~~M~~~----g~~p----d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~---~ty~~Li~~~~~~g~ 472 (732)
.++.++... .++| |..-|-..+..|.+..+.+.|.++..-.... -+.|+. .-|.-+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 445444432 3333 3456778899999999999999998776533 123332 235678888899999
Q ss_pred hHHHHHHHHHHHhccCCCChhHHHHHHHHHhchH
Q 004743 473 GDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKE 506 (732)
Q Consensus 473 ~~~A~~l~~~M~~~~~~~~p~t~~~I~~~~~~~~ 506 (732)
.+.-+..++.|.-+..+|.+-+...|........
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~ 447 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN 447 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcC
Confidence 9999999999988766666655555544444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-09 Score=111.85 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
.||.+||.++||--..+.|.++|.+-.....+.+..+||.||.+-+- ....+++ .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--------------~~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--------------SVGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--------------hccHHHH-------HHHHH
Confidence 79999999999999999999999999998889999999999988662 2224555 36766
Q ss_pred cCCCC-CccccccccccccccccccccCChhH----HHHHHHHHHHcCCCCCccccchhhhhhccc
Q 004743 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDD----LDSTFNEKENLGQFSNGHMKLNSQLLDGRS 332 (732)
Q Consensus 272 ~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~----A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~ 332 (732)
. .+. |..|+|+++.+ .++.|.++. |.+++.||++.|+.|...+|. .+|.-++
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~ 323 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFK 323 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhc
Confidence 5 555 99999999999 999998865 478889999999999999998 6666665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=123.29 Aligned_cols=257 Identities=13% Similarity=0.051 Sum_probs=163.7
Q ss_pred HHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC
Q 004743 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (732)
Q Consensus 171 ~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g 250 (732)
.++-.|+..|+.|++ +||..+|.-||..|+++.|- +|.-|+-.....+...|+.++.+.. ..+
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 456678888888888 99999999999999999999 9999998888888899999999888 444
Q ss_pred ChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC--CCCCccccc-hh--
Q 004743 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG--QFSNGHMKL-NS-- 325 (732)
Q Consensus 251 ~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g--i~Pd~~ty~-~~-- 325 (732)
+.+.+.+. -.-||+.|+.+ |...|++..-..+=..|.... ..|..+--. ..
T Consensus 74 d~Enpkep------------------~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEP------------------LADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCC------------------chhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 44433322 23479999999 999999765222222232210 111111000 00
Q ss_pred hhhhccc---c---------ccCCCchhhhccCCCCChhhhHHHHHHHHHhcc-CHHHHHHHHHHHHhCCC-CCCHHHHH
Q 004743 326 QLLDGRS---N---------LERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMCLDEV-PMNEASLT 391 (732)
Q Consensus 326 ~li~~~~---~---------~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g-~~~~A~~lf~~M~~~gi-~pd~~ty~ 391 (732)
..+++.- . .-+++++...+.+..--+..|+.-..-..-.+. ......++.+. .+.+. .|+..+|.
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~-cksl~e~~~s~~l~ 208 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNM-CKSLVEAPTSETLH 208 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHH-HHHhhcCCChHHHH
Confidence 0000000 0 001112222222111011111110100000110 11222333332 23333 48999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (732)
+++++-..+|+++.|..++.+|++.|+..+..-|.+||-+ .++...+..+..-|.+.|+.|+..||.-.+..+.++|
T Consensus 209 a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 209 AVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9999999999999999999999999999998888888876 8888888999999999999999999988777777755
Q ss_pred C
Q 004743 472 K 472 (732)
Q Consensus 472 ~ 472 (732)
.
T Consensus 286 ~ 286 (1088)
T KOG4318|consen 286 Q 286 (1088)
T ss_pred h
Confidence 4
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.7e-07 Score=106.80 Aligned_cols=290 Identities=10% Similarity=-0.076 Sum_probs=193.7
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~ 237 (732)
.....++..+|+.+++.....-.. .| ..+..+..++...|++++|++.|+++... .|+ ...+..+-..+.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~-----~~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKN-----GR--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCC-----ch--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 344778999999999888554211 12 23444446666799999999999998864 343 445656666666
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+
T Consensus 122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence 7788999998885 33321 11144557777778 888999999999888776553222
Q ss_pred Cccccch-hhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004743 318 NGHMKLN-SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (732)
Q Consensus 318 d~~ty~~-~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (732)
....+.. ..+..+-..+|...+..+....-.++...+.. +...+.+.|+.++|.+.|++..... +.+...+..+-..
T Consensus 178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLA 255 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 1111110 01111112344444554443321122222322 5677888899999999999888764 3456778888888
Q ss_pred HHhcCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004743 397 AMSMGDGDM----AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAG 471 (732)
Q Consensus 397 ~~~~g~~~~----A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g 471 (732)
|...|+.++ |...|++..+.. +.+...+..+-..+.+.|+.++|...+++..+.. |+ ...+..+-.+|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 888998885 788888877642 2345678888888888999999999998887653 44 445666778888899
Q ss_pred ChHHHHHHHHHHHhc
Q 004743 472 KGDRVYYLLHKLRTS 486 (732)
Q Consensus 472 ~~~~A~~l~~~M~~~ 486 (732)
++++|...|+++...
T Consensus 333 ~~~eA~~~l~~al~~ 347 (656)
T PRK15174 333 QYTAASDEFVQLARE 347 (656)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999888765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-06 Score=99.67 Aligned_cols=281 Identities=7% Similarity=-0.034 Sum_probs=182.8
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~ 240 (732)
..++.++|...|+.+.+. .|+ +...|..+-..+.+.|++++|+..|+++... .| +...+..+...+.
T Consensus 88 ~~g~~~~A~~~l~~~l~~--~P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAV--NVC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV--- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHh--CCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH---
Confidence 466777777777777432 111 2245666666777777777777777777653 23 3455666666666
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..|+.++|...+. .+... ...+...+..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 6677777777663 22221 11121122111 23 556677777777777765543222222
Q ss_pred ccchhhhhh-----ccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHH
Q 004743 321 MKLNSQLLD-----GRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASL 390 (732)
Q Consensus 321 ty~~~~li~-----~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~ty 390 (732)
.+. .+.. +...+|...+...... .|+ ...++. +-..|.+.|++++ |...|++..... +.+...+
T Consensus 214 ~~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~ 287 (656)
T PRK15174 214 SAG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIV 287 (656)
T ss_pred HHH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHH
Confidence 221 1111 1113344444444432 243 334444 7788899999886 899999988753 3466789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-EALLRVSV 468 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty-~~Li~~~~ 468 (732)
..+...+...|++++|...+++.... .|+ ...+..+-..|.+.|++++|...|+.+.+. .|+...+ ..+..++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 99999999999999999999998865 354 456667788899999999999999999875 4655443 33456789
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|+.++|...|++..+.
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-08 Score=71.08 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=15.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004743 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (732)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M 413 (732)
|+.||.+|||+||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-08 Score=70.12 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=32.1
Q ss_pred cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 004743 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~ 379 (732)
+|+.||++|||+ ||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~-lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNT-LIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHH-HHHHHHHCCCHHHHHHHHHhCc
Confidence 588999999999 9999999999999999999995
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.3e-06 Score=95.97 Aligned_cols=256 Identities=11% Similarity=0.041 Sum_probs=186.5
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~ 241 (732)
++.++|.+.|+...+.+. ..| +...|+.+-..+...|++++|+..|+..... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 466788888888765441 122 3467788888888999999999999998864 454 456666666677
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t 321 (732)
..|++++|...|. +..+. .-.+...|..+-.. +...|++++|...|++.... .|+..
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~~- 433 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDFI- 433 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccCH-
Confidence 7789999999995 33332 22245557777777 88899999999999887664 23321
Q ss_pred cchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004743 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (732)
Q Consensus 322 y~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g 401 (732)
..|.. +-..+.+.|++++|+..|++..... +-+...|+.+-..+...|
T Consensus 434 ------------------------------~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 434 ------------------------------FSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred ------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 12223 6677889999999999999987642 345788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004743 402 DGDMAFDMVKRMKSLGINPRLR------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (732)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~pd~~------ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (732)
++++|.+.|++.....-..+.. .++..+..+...|++++|.+++++..+.. .-+...+..|...+.+.|+.++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999876542111111 12222333445699999999999987654 2334578899999999999999
Q ss_pred HHHHHHHHHhc
Q 004743 476 VYYLLHKLRTS 486 (732)
Q Consensus 476 A~~l~~~M~~~ 486 (732)
|..+|++..+.
T Consensus 561 Ai~~~e~A~~l 571 (615)
T TIGR00990 561 ALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHH
Confidence 99999988665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=99.78 Aligned_cols=244 Identities=12% Similarity=0.029 Sum_probs=152.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-Cccccccccccccc
Q 004743 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (732)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~ 290 (732)
.++-.|...|+.|+.+||.+||.-|| ..|+++.|- +|. -|.-+ ..+ +...++.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 35677889999999999999999999 778888887 884 23333 555 77779999999
Q ss_pred cccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCC-Cchhhh--------------------------
Q 004743 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSR-------------------------- 343 (732)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~-~~~~m~-------------------------- 343 (732)
...+++.+.+. .|-.-||. .+..+|.....- .|+...
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 89999888776 46666676 555444421110 000000
Q ss_pred --ccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 344 --KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (732)
Q Consensus 344 --~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p 420 (732)
..+.-||..+ .|--..-.|.++.+.+++..|.... ..|-.+ .|+-+... ..-..++....+...-.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCC
Confidence 0011111111 1222222333333333333332211 001111 12222221 122333443333322258
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HH
Q 004743 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IA 499 (732)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~ 499 (732)
+..+|.+++++-..+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-+..++..|+..+..|..+|+.. ++
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 9999999999999999999999999999999999998888888866 7888888899999999944444448766 77
Q ss_pred HHHhchH
Q 004743 500 KWFNSKE 506 (732)
Q Consensus 500 ~~~~~~~ 506 (732)
..+.++.
T Consensus 280 p~l~N~~ 286 (1088)
T KOG4318|consen 280 PQLSNGQ 286 (1088)
T ss_pred hhhcchh
Confidence 7777554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=98.12 Aligned_cols=255 Identities=17% Similarity=0.121 Sum_probs=104.7
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~ty-n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
+.++.++|+++++.-.... .+|+...| ..+-..+-..++.+.|++.|+++...+-. +...|..++.. .
T Consensus 20 ~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--- 88 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L--- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c---
Confidence 6688999999996542211 12222344 44444556678999999999999876533 45566666666 4
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..++.++|..++. +.-+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 -------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~-- 144 (280)
T PF13429_consen 89 -------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD-- 144 (280)
T ss_dssp ---------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred -------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC--
Confidence 5677888888874 22121 1244446677777 8889999999999988765321111
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~ 400 (732)
+...|.. +-..+.+.|+.++|.+++++..+.. +-|....+.++..+...
T Consensus 145 -----------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 145 -----------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDM 193 (280)
T ss_dssp ------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTT
T ss_pred -----------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC
Confidence 2222223 5577888999999999999988763 22577889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|+...... ..|......+-+++...|+.++|..+.
T Consensus 194 ~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp CHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT------------
T ss_pred CChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 99999999998887764 4566677888889999999999999999988653 346777788899999999999999988
Q ss_pred HHHH
Q 004743 481 HKLR 484 (732)
Q Consensus 481 ~~M~ 484 (732)
.+.-
T Consensus 272 ~~~~ 275 (280)
T PF13429_consen 272 RQAL 275 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 7654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-05 Score=88.24 Aligned_cols=276 Identities=8% Similarity=-0.004 Sum_probs=181.1
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcc
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL--YLCSSAA 240 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL--~~~~~~~ 240 (732)
.|+...|++....-.+ ....|. ..|-..-.+..+.|+++.|.+.|.++.+ ..|+...+..++ ..+.
T Consensus 97 eGd~~~A~k~l~~~~~------~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD------HAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHh------cccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 4788888877776521 111233 4454455666899999999999999986 356655444333 3445
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..|+.+.|...++ ++.+. ...+......+... |.+.|++++|..++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 32255567788888 999999999999999999987653321
Q ss_pred -------ccchhhhhhcc-cccc----CCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH
Q 004743 321 -------MKLNSQLLDGR-SNLE----RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (732)
Q Consensus 321 -------ty~~~~li~~~-~~~a----~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (732)
+|. .++... .... ..++...... .|+.......+...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 111100 0000 0111111110 1222222233677888888888888888887764 45542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
-.++.+.+..++.+++.+..+...+. .|+. ..+.++=..|.+.+++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 22344555668888888888887755 3444 44566667788888888898888888865 58888888888888
Q ss_pred HhcCChHHHHHHHHHH
Q 004743 468 VEAGKGDRVYYLLHKL 483 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M 483 (732)
.+.|+.++|.+++++-
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8888888888888754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-05 Score=78.92 Aligned_cols=199 Identities=17% Similarity=0.118 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...|. ..|+.++|...+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~----------~~~~~~~A~~~~~---------- 89 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQ----------QLGELEKAEDSFR---------- 89 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH----------
Confidence 3667778888899999999999999987653 223455555555555 5566666666653
Q ss_pred ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccCCCC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
+..+.. |+. ..+
T Consensus 90 --------------------------------------~al~~~--~~~~~~~--------------------------- 102 (234)
T TIGR02521 90 --------------------------------------RALTLN--PNNGDVL--------------------------- 102 (234)
T ss_pred --------------------------------------HHHhhC--CCCHHHH---------------------------
Confidence 332221 111 111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
.. +...+...|++++|.+.|++...... ......+..+...+...|+.++|.+.+.+..... +.+...+..+
T Consensus 103 -----~~-~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 175 (234)
T TIGR02521 103 -----NN-YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLEL 175 (234)
T ss_pred -----HH-HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHH
Confidence 11 44555666777777777777665322 1233455666667777777777777777766542 2234566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...+...|+.++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus 176 a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 176 AELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 67777777777777777777665 234455566666777777777777777776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-05 Score=79.54 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=133.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++..+.. |+.... +.. +...|...|++++|.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~-------------------------------~~~-la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDDYLA-------------------------------YLA-LALYYQQLGELEKAED 86 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHH-------------------------------HHH-HHHHHHHcCCHHHHHH
Confidence 778889999999998887653 443222 112 6677888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
.+++..... +.+...+..+...+...|++++|.+.+++.......| ....+..+-..+...|+.++|...+++..+..
T Consensus 87 ~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999988764 3456788889999999999999999999988753222 34566677788999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhchHHHHh
Q 004743 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARL 510 (732)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~~~~~~a 510 (732)
..+...+..+...+...|+.++|..++++.... ....+..+.. ..-+...+...++
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 234667888889999999999999999998776 1223333333 4444444444333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=91.87 Aligned_cols=251 Identities=15% Similarity=0.075 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCC
Q 004743 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (732)
Q Consensus 196 ~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~ 275 (732)
.+-..+.+.|++++|+++++.-....-.|+...|-.++..++. ..++.+.|...+. .+... +-
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~ 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DK 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-cc
Confidence 3356677899999999999766554435666666555554442 5677888888884 44332 22
Q ss_pred CCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhH
Q 004743 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (732)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn 355 (732)
.+...|..++.. ...+++++|.+++.+.-++. ++.. .+.
T Consensus 76 ~~~~~~~~l~~l-------~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------------~l~ 114 (280)
T PF13429_consen 76 ANPQDYERLIQL-------LQDGDPEEALKLAEKAYERD--GDPR--------------------------------YLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc-------cccccccccccccccccccc--cccc--------------------------------hhh
Confidence 222234443332 36778888887776554432 2211 222
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 004743 356 EIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (732)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~ 433 (732)
. ++..+.+.++++++.+++++.... ..+.|...|..+...+.+.|+.++|.+++++..+. .|+ ....+.++..+.
T Consensus 115 ~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 115 S-ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLI 191 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHC
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3 667788999999999999998753 34578888999999999999999999999998775 464 677888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH-HHHHHhchHHHHh
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARL 510 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~-I~~~~~~~~~~~a 510 (732)
..|+.+++.++++...... ..|...+..+-.+|...|+.++|...|++.... .|... +... ...+-..|...+|
T Consensus 192 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------
T ss_pred HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 9999999999998887664 445566788999999999999999999998876 44333 2222 3344444444333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-05 Score=96.31 Aligned_cols=294 Identities=11% Similarity=0.001 Sum_probs=166.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
..+.++.++|.+.|++..+. . +.+...+..+-..+...|++++|++.|++..+.. +.+...+..+...|...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~--~-----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQV--D-----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--C-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 44678899999999998654 1 1234677788899999999999999999998643 22233444443333210
Q ss_pred ccC--------------------------------CcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccccccc
Q 004743 240 AVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP 287 (732)
Q Consensus 240 ~~~--------------------------------~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~ 287 (732)
... +......|+.++|+..|. +..+. ...+...+..+-..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH
Confidence 000 000113577777777774 33322 22233445556666
Q ss_pred ccccccccccCChhHHHHHHHHHHHcCCCCCccc--cchhhhhhccc--cccCCCchhhhccCCCCChhh---------h
Q 004743 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD---------A 354 (732)
Q Consensus 288 ~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t--y~~~~li~~~~--~~a~~~~~~m~~~g~~pd~~t---------y 354 (732)
+.+.|++++|...|++..+. .|+... |..+.+..... ..|...+..+......++... +
T Consensus 505 ------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 ------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred ------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 88889999999999888764 243221 11111111000 122222222211111111110 0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 004743 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (732)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~ 434 (732)
.. +...+...|+.++|.++++. .+.+...+..|-..+.+.|+.++|.+.|++..+.. +-+...+..+...|..
T Consensus 577 l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 11 33456666777777776661 23444556666667777777777777777766542 2235566667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 435 NGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+.++|.+.++...+. .|+ ...+..+-.++.+.|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 77777777777765543 232 334455556666777777777777776554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-05 Score=89.64 Aligned_cols=286 Identities=9% Similarity=-0.006 Sum_probs=157.0
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++..+|.+++++..+. .+.+...+..+...+...|++++|+..+++..+. -+.+.. +..+-.++.
T Consensus 61 ~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~---- 127 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK---- 127 (765)
T ss_pred HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH----
Confidence 556666666666665322 1122344556666666677777777777776654 122333 445544555
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t 321 (732)
..|+.++|+..+. +..+. ...+...+..+... +...+..+.|...++.... .|+...
T Consensus 128 ------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 128 ------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 5566666766663 22221 11122223334444 5555666666655543322 222100
Q ss_pred cc----hhhhhhcc-------------ccccCCCchhhhcc-CCCCChh-hhHHH---HHHHHHhccCHHHHHHHHHHHH
Q 004743 322 KL----NSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEI---RLSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 322 y~----~~~li~~~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~---lI~~~~k~g~~~~A~~lf~~M~ 379 (732)
.. ...++... .+.|...++.+... .-.|+.. .+... .+..+...|++++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00 00000000 01122223333321 1122221 11111 1234456688999999999998
Q ss_pred hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-
Q 004743 380 LDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG- 452 (732)
Q Consensus 380 ~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g- 452 (732)
..+-. |+-. --.+...|...|++++|..+|+++.... |. ...+..+..++...|+.++|.++++.+.+..
T Consensus 265 ~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 265 AEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred ccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 87632 4321 1224668889999999999999876542 22 2345556667889999999999999888652
Q ss_pred ----------CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 453 ----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 453 ----------v~pd~---~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-.|+. ..+..+...+...|+.++|.++|+++...
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12342 23456667788889999999999998776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00018 Score=84.85 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=164.9
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSS 238 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~ 238 (732)
..+.++.++|.+.|+.... ..|+...|..+-.+|.+.|++++|++.++...+. .| +...|..+-.+|.
T Consensus 137 ~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~- 205 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD- 205 (615)
T ss_pred HHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH-
Confidence 4467899999999998743 2345578888999999999999999999998865 34 4557777777777
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc-----------------------------cccccc-----
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN-----------------------------GQLDYG----- 284 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~-----------------------------~tyn~L----- 284 (732)
..|++++|+.-|... ....++.+. -.+..+
T Consensus 206 ---------~lg~~~eA~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 206 ---------GLGKYADALLDLTAS-------CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred ---------HcCCHHHHHHHHHHH-------HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 778888887655311 000000000 000000
Q ss_pred ---------------------cccccc----cccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCc
Q 004743 285 ---------------------SSPMID----KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPD 339 (732)
Q Consensus 285 ---------------------I~~~~~----~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~ 339 (732)
..+... .......+.+++|...|++....+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------------------------- 324 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------------------------- 324 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-------------------------
Confidence 000000 000011133444444444444332
Q ss_pred hhhhccCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004743 340 DQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (732)
Q Consensus 340 ~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (732)
...|+. ..|+. +-..+...|++++|...|++..+. .|+ ..+|..+...+...|++++|...|++..+..
T Consensus 325 ------~~~~~~a~a~~~-lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 325 ------KLGEKEAIALNL-RGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred ------CCChhhHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 112222 23333 556666778888888888877654 343 4577777777888888888888888776542
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 418 ~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+-+...|..+-..+...|++++|...|++..+.. ..+...+..+-..+.+.|+.++|...|++....
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2235667777777888888888888888777653 223555666777777888888888888877654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.5e-05 Score=85.11 Aligned_cols=281 Identities=9% Similarity=-0.022 Sum_probs=178.2
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~-~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~--tyn~LL~~~~~ 238 (732)
..|+...|++.+....+. .|+ ...|-..-.++.+.|+.+.|.+.|.+..+.- |+.. ..-.....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568899999998765221 232 2334444567778899999999999987543 4432 2222344555
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
..|+.+.|...+. ++.+. ...+...+-.+... +.+.|++++|.+++..+.+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6789999999995 55554 33355556777777 9999999999999999999875433
Q ss_pred ccccc------hhhhhhccccccCCCchhhhccCCCC-----ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH
Q 004743 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDWSI-----DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE 387 (732)
Q Consensus 319 ~~ty~------~~~li~~~~~~a~~~~~~m~~~g~~p-----d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~ 387 (732)
..... .+.+-.+....+...+..+... .| +...+.. +...+...|+.++|.+++++..+.. ||.
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~ 296 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDD 296 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCc
Confidence 32211 0111111111111122222211 12 3334444 7778888888888888888887753 333
Q ss_pred HHH-HHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004743 388 ASL-TAVGRM--AMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (732)
Q Consensus 388 ~ty-~~LI~~--~~~~g~~~~A~~l~~~M~~~g~~pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (732)
... -.++.. ....++.+.+.+.++...+. .|+.. ...++=..|.+.|++++|.+.|+........|+...+.
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~ 374 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA 374 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH
Confidence 211 012222 23356777777777765543 34443 33455566778888888888888544444578888888
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 004743 462 ALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 462 ~Li~~~~~~g~~~~A~~l~~~M 483 (732)
.+-..+.+.|+.++|.+++++-
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00025 Score=89.49 Aligned_cols=123 Identities=9% Similarity=0.031 Sum_probs=86.7
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH----
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK-LGQYHYNVLLY---- 234 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~-pd~~tyn~LL~---- 234 (732)
....++.++|...|++..+.. +.+...+..+-..+.+.|++++|+..|++..+..-. +....+..++.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 346788999999999885531 124578888889999999999999999998864321 12222322221
Q ss_pred --------HHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHH
Q 004743 235 --------LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (732)
Q Consensus 235 --------~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (732)
.+. +.|++++|+..|. +.... .-.+...+..|-.. +...|++++|.+.
T Consensus 352 ~~~~~~g~~~~----------~~g~~~eA~~~~~-------~Al~~-~P~~~~a~~~Lg~~------~~~~g~~~eA~~~ 407 (1157)
T PRK11447 352 WLLIQQGDAAL----------KANNLAQAERLYQ-------QARQV-DNTDSYAVLGLGDV------AMARKDYAAAERY 407 (1157)
T ss_pred HHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHH
Confidence 233 6789999999995 44432 21244456666667 8899999999999
Q ss_pred HHHHHHc
Q 004743 307 FNEKENL 313 (732)
Q Consensus 307 f~eM~~~ 313 (732)
|++..+.
T Consensus 408 y~~aL~~ 414 (1157)
T PRK11447 408 YQQALRM 414 (1157)
T ss_pred HHHHHHh
Confidence 9998865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00046 Score=83.31 Aligned_cols=290 Identities=10% Similarity=-0.044 Sum_probs=186.4
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~ 238 (732)
+.+.++.++|...+++..+. .| .+.. |..+-.++...|+.++|+..++++.+. .|+ ...+..+..++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-
Confidence 34778999999999998543 22 2334 888888999999999999999999975 344 344445555555
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccC----CCC----CccccccccccccccccccccCCh---hHHHHHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~----g~~----d~~tyn~LI~~~~~~~~~~~~g~~---~~A~~lf 307 (732)
..|..+.|+..+.. ..... ++. ....-..+... ....+++ ++|...+
T Consensus 162 ---------~~~~~e~Al~~l~~-------~~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAIDD-------ANLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 56777888877741 11110 000 00001111222 3334445 7788888
Q ss_pred HHHHHc-CCCCCcc-ccch------hh-hhhccccccCCCchhhhccCCC-CCh-hhhHHHHHHHHHhccCHHHHHHHHH
Q 004743 308 NEKENL-GQFSNGH-MKLN------SQ-LLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIYE 376 (732)
Q Consensus 308 ~eM~~~-gi~Pd~~-ty~~------~~-li~~~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (732)
+.+.+. ...|+.. .+.. +. +..+....|...|..+...+-. |+- ..+ +-..|...|++++|..+|+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHHH
Confidence 888754 2333332 1110 01 1122235566677777765421 332 222 3457888999999999999
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---hhhHHHHHHHHHhcCChH
Q 004743 377 KMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 377 ~M~~~gi~p---d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----------~~pd---~~ty~~lI~~~~~~g~~~ 439 (732)
+.....-.. ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 877543111 13456667778889999999999999887652 1123 224455667888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|.++++++.... .-+...+..+...+...|+.++|++.+++....
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 9999999987653 344667778888888999999999999988776
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9e-05 Score=76.36 Aligned_cols=229 Identities=16% Similarity=0.133 Sum_probs=165.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLGQYHYNV---LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd~~tyn~---LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~t 280 (732)
....++|.++|-+|.+. |..||.+ |=+.|- +.|.+++|+.+.. .+.+. +..|
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfR----------sRGEvDRAIRiHQ-------~L~~s----pdlT 102 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFR----------SRGEVDRAIRIHQ-------TLLES----PDLT 102 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhHHHHHHHHHHH----------hcchHHHHHHHHH-------HHhcC----CCCc
Confidence 47889999999999973 3444443 334455 7899999999995 55554 4445
Q ss_pred ccccccc-ccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 281 LDYGSSP-MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 281 yn~LI~~-~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
++-=+-+ ......|-..|-+|.|..+|..+...|... ..+. -.|+
T Consensus 103 ~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa----------~~Al------------------------qqLl 148 (389)
T COG2956 103 FEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA----------EGAL------------------------QQLL 148 (389)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh----------HHHH------------------------HHHH
Confidence 4432222 222344778899999999999887654210 0011 1188
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHh
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCN 434 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~ 434 (732)
.-|-+..++++|.++-+++...|-.+.. .-|.-|...+....+.+.|..++++-.+. .|+.+--++++ ..+..
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELA 226 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHh
Confidence 8899999999999999998887655432 24555666666788899999999876654 34444334333 46778
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
.|+.++|.+.++...+.+-.--..+...|..+|.+.|+.++....+.++.+...++.+.
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 89999999999999998766666788999999999999999999999999886666665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00063 Score=83.19 Aligned_cols=230 Identities=8% Similarity=-0.041 Sum_probs=167.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...|..+-.++.. ++..+|+..|.+..... |+......+...+. ..|+.++|...|. .+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 44666666666665 89999999888877543 66554333334444 6799999999995 33
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
... -++...+..+... +.+.|++++|...|++..+.. |+....
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 322 1122223344445 778999999999999887653 332111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~l 428 (732)
+.. +.....+.|++++|...|++..+. .|+...|..+-..+.+.|+.++|...+++.... .|+ ...++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223344569999999999998865 467889999999999999999999999997765 455 4566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-..+...|+.++|.++++...+.. .-+...+..+-.++...|+.++|...|++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 678999999999999999988753 234567788888999999999999999998765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-06 Score=58.63 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (732)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00024 Score=78.67 Aligned_cols=279 Identities=11% Similarity=0.015 Sum_probs=169.1
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
+.+++...+|+.+++.|.+.. | -.+..|..+-.++...|+...|.+.|.+..+ +.|+.+...+-+.-+.+
T Consensus 126 ~kerg~~~~al~~y~~aiel~--p-----~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk- 195 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK--P-----KFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK- 195 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC--c-----hhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH-
Confidence 347889999999999996542 2 1346899999999999999999999998876 45776665555544443
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|++++|..-+. +.++.... =.+.|+-|=.. +...|+...|..-|++-... .|+-
T Consensus 196 --------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~f 251 (966)
T KOG4626|consen 196 --------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPNF 251 (966)
T ss_pred --------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCcc
Confidence 3477777777764 22222211 23446666666 77788888888888877654 3332
Q ss_pred c-cc-chhhhhhccccccCCCchhh-----hccCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHH
Q 004743 320 H-MK-LNSQLLDGRSNLERGPDDQS-----RKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASL 390 (732)
Q Consensus 320 ~-ty-~~~~li~~~~~~a~~~~~~m-----~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty 390 (732)
. .| |.|.+.. +...|+.. ....+.|+. +.|-+ |-..|-..|.+|-|+..+++-.+. .|+ ...|
T Consensus 252 ~dAYiNLGnV~k-----e~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 252 LDAYINLGNVYK-----EARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred hHHHhhHHHHHH-----HHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 1 11 1111111 11111111 112334432 22333 445566667777777777776653 343 3567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSV 468 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~ 468 (732)
|.|-.++-..|++.+|.+.++..... .|+ .-+-+.|=..|...|.++.|..+|....+- .|.. ...|-|-..|-
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHH
Confidence 77777777777777777777665543 233 334455666677777777777776655432 3332 34555666666
Q ss_pred hcCChHHHHHHHHHHH
Q 004743 469 EAGKGDRVYYLLHKLR 484 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~ 484 (732)
+.|++++|...+++..
T Consensus 400 qqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEAL 415 (966)
T ss_pred hcccHHHHHHHHHHHH
Confidence 6677777666666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.1e-06 Score=57.05 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (732)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 555666666666666666666666666565555
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0012 Score=79.32 Aligned_cols=128 Identities=13% Similarity=0.001 Sum_probs=98.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHH
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFC 433 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~pd~~ty~~lI~~~~ 433 (732)
+-++.+.|++.++.+.|+.|...|.+....+--++.++|...+++++|+.++.+..... ..++......|.-+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 45677888899999999999988876555688889999999999999999999886542 2334444678889999
Q ss_pred hcCChHHHHHHHHHHHHCC-------------CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~g-------------v~pd~~ty-~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+++++|..+++.+.+.- -.||-..+ ..++..+...|+..+|++.++++...
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998731 11333333 34566678899999999999999766
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.6e-06 Score=57.10 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p 224 (732)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999998
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=78.54 Aligned_cols=283 Identities=9% Similarity=-0.052 Sum_probs=186.6
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HH
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---YL 235 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~--~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL---~~ 235 (732)
.+.|+...|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++.. .|+...+..++ ..
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~l 111 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARA 111 (822)
T ss_pred HhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHH
Confidence 3678888999999988432 2221 233 88888889999999999999988 34333333333 34
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCC
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi 315 (732)
|. ..|++++|++++. ++.+. .-.|.-.+..|+.. +...++.++|+..++.....
T Consensus 112 y~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~-- 165 (822)
T PRK14574 112 YR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER-- 165 (822)
T ss_pred HH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc--
Confidence 55 6799999999994 55544 33344445566666 88999999999999988766
Q ss_pred CCCccccchhhhhhcc---c--cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHH--------------
Q 004743 316 FSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE-------------- 376 (732)
Q Consensus 316 ~Pd~~ty~~~~li~~~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~-------------- 376 (732)
.|+...|- .+..-+ . ..|...+.++... .|+...+..-++....+.|-...|.++..
T Consensus 166 dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l 241 (822)
T PRK14574 166 DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL 241 (822)
T ss_pred CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH
Confidence 45544442 111111 1 2355667777664 57655554446666666666555544433
Q ss_pred ----------------------------------HHHh-CCCCCCH-HHH-H---HHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 377 ----------------------------------KMCL-DEVPMNE-ASL-T---AVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 377 ----------------------------------~M~~-~gi~pd~-~ty-~---~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
.+.. .+-.|.. .-| . =.+-++...|+.+++.+.++.|...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 2221 1111221 111 1 2233666788888888888888888
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 417 g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|.+.-..+--.+-++|...++.++|..+|..+.... ..++......|.-+|...+++++|..+++++.+.
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 765445566778888888899999999988886542 2334444678888888889999999999888873
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.3e-06 Score=55.99 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p 420 (732)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0021 Score=78.63 Aligned_cols=220 Identities=10% Similarity=0.029 Sum_probs=155.5
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~ 243 (732)
++.++|...+.+-... .|+......+...+...|++++|...|+.+... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6777888877765332 234344334445556899999999999997653 455555555555666
Q ss_pred cccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc
Q 004743 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (732)
Q Consensus 244 ~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~ 323 (732)
+.|+.++|...+. ..... +..+...+..+... ....|++++|...|++-.+. .|+.
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~---- 609 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSA---- 609 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCH----
Confidence 7799999999995 33322 11111112122222 33459999999999887654 2432
Q ss_pred hhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004743 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (732)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (732)
..|.. +-..+.+.|+.++|.+.|++..... +-+...++.+-..+...|+.
T Consensus 610 ----------------------------~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 610 ----------------------------NAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ----------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 23335 6678999999999999999988764 34567788888899999999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 004743 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (732)
Q Consensus 404 ~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~ 457 (732)
++|..++++..+. .| +...+..+-.++...|++++|...++...+. .|+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 9999999987765 35 4567778888999999999999999998865 3543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0017 Score=75.54 Aligned_cols=249 Identities=12% Similarity=0.021 Sum_probs=129.2
Q ss_pred CCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004743 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (732)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~---------k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~ 235 (732)
...+|..+|++..+. .|+ +...|..+-.++. ..+++++|...+++..+.. +-+...+..+-..
T Consensus 276 ~~~~A~~~~~~Al~l--dP~-----~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~ 347 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPN-----SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHhc--CCc-----cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 346788888876332 121 2234444433332 3345889999999888653 2245555555445
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCC
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi 315 (732)
+. ..|+.++|...|. +..+. +..+...|..+-.. +...|++++|...|++..+..
T Consensus 348 ~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~- 402 (553)
T PRK12370 348 NT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD- 402 (553)
T ss_pred HH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC-
Confidence 55 5677888888874 33222 11133335555455 666777777777777665542
Q ss_pred CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004743 316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (732)
Q Consensus 316 ~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~ 395 (732)
|+...+. .. +...+...|++++|.+.+++.....-+-+...+..+-.
T Consensus 403 -P~~~~~~-------------------------------~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~ 449 (553)
T PRK12370 403 -PTRAAAG-------------------------------IT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVM 449 (553)
T ss_pred -CCChhhH-------------------------------HH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 3211110 01 22234445667777777777655431113344555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCh
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKG 473 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~ 473 (732)
++...|+.++|...+.++... .|+. ...+.+-..|+..| ++|...++.+.+. .-.|...-+..++ |.-.|+-
T Consensus 450 ~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~ 523 (553)
T PRK12370 450 FLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEA 523 (553)
T ss_pred HHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhh
Confidence 666777777777777665433 2332 22333334455555 3666655555432 1122222223333 3334544
Q ss_pred HHHHHHHHHHHhc
Q 004743 474 DRVYYLLHKLRTS 486 (732)
Q Consensus 474 ~~A~~l~~~M~~~ 486 (732)
+.+..+ +++.+.
T Consensus 524 ~~~~~~-~~~~~~ 535 (553)
T PRK12370 524 IAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHH-HHhhcc
Confidence 444444 555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0023 Score=71.99 Aligned_cols=284 Identities=15% Similarity=0.062 Sum_probs=189.8
Q ss_pred CchHHHHHHHHhhcCCCCCCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHhcccC
Q 004743 166 DSGQYKVRGITDEKGSKKSKKDRSEQ-FQLRVELDMCSKRGDVMGAIRLYDKAQREG-I-KLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 166 ~~~A~~v~~~M~~~g~~~~~~~~p~~-~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G-i-~pd~~tyn~LL~~~~~~~~~ 242 (732)
..+|...|..+ |. ..+|+ .+..-+=.+|-..+++++|.++|+...+.. . .-+...|+++|.-+-+.
T Consensus 335 ~~~A~~~~~kl------p~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--- 403 (638)
T KOG1126|consen 335 CREALNLFEKL------PS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--- 403 (638)
T ss_pred HHHHHHHHHhh------HH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh---
Confidence 34566666554 22 22332 344455578889999999999999998542 2 23678999999777621
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC-Cccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGHM 321 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P-d~~t 321 (732)
-++..+. +++.+. .-....||.++=++ |+-.++.+.|.+.|++-.+. .| ...+
T Consensus 404 -----------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faYa 457 (638)
T KOG1126|consen 404 -----------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAYA 457 (638)
T ss_pred -----------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccchh
Confidence 2222222 233322 11255789999999 99999999999999876654 34 4455
Q ss_pred cchhhhhhccc-------cccCCCchhhhccCCCCChhhhHHH--HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004743 322 KLNSQLLDGRS-------NLERGPDDQSRKKDWSIDNQDADEI--RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (732)
Q Consensus 322 y~~~~li~~~~-------~~a~~~~~~m~~~g~~pd~~tyn~~--lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~ 392 (732)
|+ +-|+. +.|...|. +.+..|...||+. |=-.|.|.++++.|+--|++..+-+ +-|.+....
T Consensus 458 yT----LlGhE~~~~ee~d~a~~~fr----~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~ 528 (638)
T KOG1126|consen 458 YT----LLGHESIATEEFDKAMKSFR----KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCH 528 (638)
T ss_pred hh----hcCChhhhhHHHHhHHHHHH----hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhh
Confidence 54 33333 33333333 3455677777762 2345778899999999998877654 346677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVEAG 471 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t-y~~Li~~~~~~g 471 (732)
+-..+-+.|+.|+|++++++-....-+--..-|. ....+...++.++|+..++++++. .|+..+ |-.|-..|.+-|
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHc
Confidence 7788889999999999999877654333334444 445566788999999999999864 677654 556667888899
Q ss_pred ChHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 004743 472 KGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (732)
Q Consensus 472 ~~~~A~~l~~~M~~~~~~~~p~t~~~I~~~ 501 (732)
+.+.|+.=|.-+.+. .|.+.- ..|...
T Consensus 606 ~~~~Al~~f~~A~~l--dpkg~~-i~~k~~ 632 (638)
T KOG1126|consen 606 NTDLALLHFSWALDL--DPKGAQ-IQIKAA 632 (638)
T ss_pred cchHHHHhhHHHhcC--CCccch-hhHHHH
Confidence 999999888887765 555433 334443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0016 Score=72.51 Aligned_cols=218 Identities=8% Similarity=-0.032 Sum_probs=153.6
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-------HYNVL 232 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~-------tyn~L 232 (732)
....++.+.|.+.++++.+.. +-+...+..+...|.+.|++++|++++..+.+.+..++.. +|..+
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l 235 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL 235 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346688889999999884432 1233678888999999999999999999999887653221 22223
Q ss_pred HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHH
Q 004743 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
+.... +....+....++. .+.+. .+ +.-..-.+..+ +...|+.++|.+++.+..
T Consensus 236 ~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 236 MDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHH
Confidence 33222 1122223333332 12111 11 33334455556 888999999999998776
Q ss_pred HcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004743 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (732)
Q Consensus 312 ~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~ 391 (732)
+. .||.. ..++-+.+..++.+++.+..+...+.. +-|...+.
T Consensus 291 ~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l 332 (398)
T PRK10747 291 KR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWS 332 (398)
T ss_pred hc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHH
Confidence 63 23221 114455556799999999999988763 44566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
++-..|.+.+++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999998865 6999999999999999999999999998754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0034 Score=72.90 Aligned_cols=240 Identities=9% Similarity=-0.059 Sum_probs=120.5
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhc
Q 004743 189 SEQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (732)
Q Consensus 189 p~~~tyn~lI~a~~k-----~g~~~~A~~lf~~M~~~Gi~pd~-~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~ 262 (732)
.+...|...+.+-.. .+++++|+++|++..+. .|+. ..|..|-.+|......+. ....++.++|...+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~-- 328 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAI-- 328 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHH--
Confidence 344566666666432 23578999999998854 4543 344444333331110000 012344566666663
Q ss_pred cccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhh
Q 004743 263 TMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQS 342 (732)
Q Consensus 263 ~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m 342 (732)
+..+. +-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 329 -----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~--------------------- 373 (553)
T PRK12370 329 -----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISAD--------------------- 373 (553)
T ss_pred -----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHH---------------------
Confidence 22221 11133334444334 556667777777776665542 32211
Q ss_pred hccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 004743 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (732)
Q Consensus 343 ~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd- 421 (732)
.|.. +-..|...|++++|...+++..+..-. +...+..++..+...|++++|...+++..... .|+
T Consensus 374 ----------a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~ 440 (553)
T PRK12370 374 ----------IKYY-YGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDN 440 (553)
T ss_pred ----------HHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccC
Confidence 1112 445566667777777777776654311 11222233334555666777777766655442 233
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...+..+-.++...|+.++|.+.+.++... .|+.. ..+.|-..|+..| ++|...++.+.+
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 223444455556667777777776665433 23322 2333334445555 355555555544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0035 Score=64.98 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=129.5
Q ss_pred cccccchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (732)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~-tyn~lI~a~~k~g~~~~A~~lf~~M~~~ 220 (732)
.+...-+..+|-.++ ...+.|.++|-+|.+ ..|..+ +--+|=+.|-+.|.++.|+.+...+.++
T Consensus 34 ~lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s 98 (389)
T COG2956 34 RLSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES 98 (389)
T ss_pred hccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 344555666666666 568899999999954 223223 2334556778889999999999998864
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCCh
Q 004743 221 GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF 300 (732)
Q Consensus 221 Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~ 300 (732)
|| .|++-=+.+.-.. +..+-..|-+++|+++|. .+++. |..-.-.---|+.- |-...+|
T Consensus 99 ---pd-lT~~qr~lAl~qL---~~Dym~aGl~DRAE~~f~-------~L~de-~efa~~AlqqLl~I------YQ~treW 157 (389)
T COG2956 99 ---PD-LTFEQRLLALQQL---GRDYMAAGLLDRAEDIFN-------QLVDE-GEFAEGALQQLLNI------YQATREW 157 (389)
T ss_pred ---CC-CchHHHHHHHHHH---HHHHHHhhhhhHHHHHHH-------HHhcc-hhhhHHHHHHHHHH------HHHhhHH
Confidence 33 2333322222110 012337899999999995 44433 11111112334455 8888899
Q ss_pred hHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHh
Q 004743 301 DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL 380 (732)
Q Consensus 301 ~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~ 380 (732)
++|..+-.++...|-.+..+ .+.+-||+ |-..+.-..++++|.+++.+-.+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~-----eIAqfyCE------------------------LAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRV-----EIAQFYCE------------------------LAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHHHHHHHHHHHcCCccchh-----HHHHHHHH------------------------HHHHHhhhhhHHHHHHHHHHHHh
Confidence 99999988888775433322 22233342 22222233344555555554443
Q ss_pred CCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 381 DEVPMNEASLTA-VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 381 ~gi~pd~~ty~~-LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.. |+.+--++ +=+.+...|++..|.+.++...+.+..--..+-..|..+|...|+.++....+.++.+.
T Consensus 209 a~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 209 AD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 32 22221121 12233445555555555555544432222334444555555555555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.5e-05 Score=52.50 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi 222 (732)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0074 Score=68.10 Aligned_cols=242 Identities=12% Similarity=0.020 Sum_probs=157.4
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH----HHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQ----YHYN 230 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~ty-n~lI~a~~k~g~~~~A~~lf~~M~~---~Gi~pd~----~tyn 230 (732)
.....++.+.|+.+|+.-.+.-.+......|.+.+. +.+=..|...+++.+|..+|.++.. ...-++. .+++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 455678999999999986553111111234443332 3355678888999999999999972 2222332 3444
Q ss_pred HHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHH
Q 004743 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 231 ~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
.|-.+|+ +.|++++|...++ .|.+++..
T Consensus 288 nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~- 315 (508)
T KOG1840|consen 288 NLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK- 315 (508)
T ss_pred HHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH-
Confidence 4445566 6777777777663 33333333
Q ss_pred HHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC---CCCCC-
Q 004743 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---EVPMN- 386 (732)
Q Consensus 311 ~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd- 386 (732)
..|.. .|.+.+..+-+...|+..+++++|..+++.-.+. -..++
T Consensus 316 -~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 316 -LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred -hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 11110 1122222222667788888888888888755431 12222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHH----HCC
Q 004743 387 ---EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEHML----EHG 452 (732)
Q Consensus 387 ---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~----~~g 452 (732)
..+|+.|-..|-+.|++++|.+++++.... | ..+. -..++-|=..|.+.+..++|.++|.+-. ..|
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 357999999999999999999999987643 1 1222 3456667778888899999999987743 334
Q ss_pred CC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 453 VY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 453 v~-pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.. |+ ..+|.-|...|.+.|+++.|.++.+...
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 33 4678899999999999999999988765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.1e-05 Score=51.42 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.03 Score=63.81 Aligned_cols=293 Identities=11% Similarity=0.038 Sum_probs=183.8
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~-~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (732)
.+.+.|+.++|++.++.-.. ..+| ...+...-..+.+.|+.++|..+|..+.+.+ |+-..|-..+..+.
T Consensus 13 il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH
Confidence 45588999999999977522 2233 2455667788899999999999999999876 67676666665554
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCCh-hHHHHHHHHHHHcC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLG 314 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~g 314 (732)
.... .......+....+++ ++... .+ +.+-.=.|. +.....| ..+...+..+..+|
T Consensus 83 g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~Kg 141 (517)
T PF12569_consen 83 GLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRKG 141 (517)
T ss_pred hhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhcC
Confidence 1110 001224556666664 33221 11 111111111 2222233 34566667778888
Q ss_pred CCCCccccc-----------hhhhhhcccccc--CCCchhh-hccCCCCChhhhHHHH-HHHHHhccCHHHHHHHHHHHH
Q 004743 315 QFSNGHMKL-----------NSQLLDGRSNLE--RGPDDQS-RKKDWSIDNQDADEIR-LSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 315 i~Pd~~ty~-----------~~~li~~~~~~a--~~~~~~m-~~~g~~pd~~tyn~~l-I~~~~k~g~~~~A~~lf~~M~ 379 (732)
+++--...- ...++.++.... ...+..- ....-.|....|...+ -..|-..|+.++|++.+++-.
T Consensus 142 vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI 221 (517)
T PF12569_consen 142 VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI 221 (517)
T ss_pred CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 643222221 112222222100 0011100 0111235555555434 356778999999999999888
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 380 LDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 380 ~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
+.. |+ +-.|..-.+.|-+.|++++|.+.+++-..... -|-..-+-....+.++|++++|.+++......+..|-..
T Consensus 222 ~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~ 298 (517)
T PF12569_consen 222 EHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN 298 (517)
T ss_pred hcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC
Confidence 763 54 66888889999999999999999999887754 477778889999999999999999999988777544332
Q ss_pred HH--------HHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 459 EL--------EALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 459 ty--------~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+ ...-.+|.+.|++..|++.|..+.+
T Consensus 299 L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 299 LNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 21 3345667889998888877766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00059 Score=60.16 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEA 462 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty~~lI~~~~~~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (732)
..|.-|...+++.....+|..+++.|+ .|++.+|+.++.+.++.. .+-..+.+|++|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344444444555666666666666665 566666666665555542 23345667777777777777777777
Q ss_pred HHHHHHh
Q 004743 463 LLRVSVE 469 (732)
Q Consensus 463 Li~~~~~ 469 (732)
+|..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.022 Score=60.78 Aligned_cols=282 Identities=12% Similarity=-0.004 Sum_probs=183.6
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (732)
.|++..|+++..+-.+. +..|- ..|-.-..+.-+.||.+.|-.+..+.-+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~------~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH------GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhc------CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 47889999988875333 23343 6778888888999999999999999887633555666666666666
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
..|+.+.|..-++ ++.+. +-.+...-.....+ |.+.|++.+...++..|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~-------~ll~~-~pr~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVD-------QLLEM-TPRHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHH-------HHHHh-CcCChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 5567777776664 22211 22255557777888 99999999999999999999876554322
Q ss_pred c------hhhhhhccc-cccCC---Cchhhhcc-CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004743 323 L------NSQLLDGRS-NLERG---PDDQSRKK-DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (732)
Q Consensus 323 ~------~~~li~~~~-~~a~~---~~~~m~~~-g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~ 391 (732)
- .+.+-+.-. ..+.. .+.+...+ .-.|..+ .+ ++.-+.+.|+.++|.++..+-.+++..|.. .
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~--~~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~ 299 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV--VA-YAERLIRLGDHDEAQEIIEDALKRQWDPRL---C 299 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH--HH-HHHHHHHcCChHHHHHHHHHHHHhccChhH---H
Confidence 1 111111111 01111 11111110 0112221 12 566778888999999998888888776662 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH-HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M-~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
. .-.+.+.++.+.-.+..+.- +..+..| -.+.+|=.-|.+++.+.+|.+.|+...+ ..|+..+|+.+-+++.+.
T Consensus 300 ~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 300 R-LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred H-HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 1 22344566666555555443 3445555 4556666678888999999999985554 468999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 004743 471 GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~ 486 (732)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999998888775433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.011 Score=66.11 Aligned_cols=229 Identities=10% Similarity=-0.022 Sum_probs=148.5
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++.+.|...++++.+.. | -+...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++...-.
T Consensus 165 ~~~~~~~Al~~l~~l~~~~--P-----~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA--P-----RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5788999999999995542 2 13367889999999999999999999999998865433222222222210000
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
........+....... ...+. .. +...+-.+... +...|+.++|..++++..+. .||..
T Consensus 238 ---~~~~~~~~~~L~~~~~-------~~p~~--~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 238 ---EAMADEGIDGLLNWWK-------NQPRH--RRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred ---HHHHhcCHHHHHHHHH-------HCCHH--HhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhh--CCCcc
Confidence 0000011112222221 11100 00 33345566667 89999999999999988775 24433
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMA 397 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~ 397 (732)
... +-....-.....++.+.+.+.++...+. .|+. ....++-..|
T Consensus 298 ~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 298 AIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLL 345 (409)
T ss_pred cch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH
Confidence 210 0010112233456778888888776654 2333 4566888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
.+.|++++|.+.|+........||...+..+-..+-+.|+.++|.+++++-.
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999965555567999999999999999999999999998743
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0009 Score=73.69 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=91.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
+++.+....+++.+..++-+.+.. ....-..|..++|+.|.+.|..++|..+++.=...|+-||..|||.||+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 667777777888888888888765 222223455699999999999999999998888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
|++..|.++..+|...+...+..|+.--+.+|.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999988888888888887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.018 Score=64.37 Aligned_cols=257 Identities=15% Similarity=0.102 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
..+|..+-+.+-..|++++|+.+|+.|.+. +| .+..|--+-.++. ..|+.+.|.+.|. +.+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~al 177 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EAL 177 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHH
Confidence 368999999999999999999999999975 34 3567777777787 7788888888885 222
Q ss_pred cccCCCCCccc-cccccccccccccccccCChhHHHHHHHHHHHcCCCCC-ccccc-hhhhhhcccc--ccCCCchhhhc
Q 004743 270 GDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL-NSQLLDGRSN--LERGPDDQSRK 344 (732)
Q Consensus 270 ~~~~g~~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd-~~ty~-~~~li~~~~~--~a~~~~~~m~~ 344 (732)
.-....-+..+ ...|++ ..|++.+|..-+.+-.+. .|. .+.|+ .|.+.....+ .|..-|.+..
T Consensus 178 qlnP~l~ca~s~lgnLlk---------a~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv- 245 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLK---------AEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV- 245 (966)
T ss_pred hcCcchhhhhcchhHHHH---------hhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh-
Confidence 21111011212 333333 367888887777655443 231 12222 1111111111 1111111111
Q ss_pred cCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 004743 345 KDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (732)
Q Consensus 345 ~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd- 421 (732)
.+.|+- ..|-+ |=..|...+.+++|...+.+... ..|+ .+.|..|-..|-..|.+|.|.+.+++..+ +.|+
T Consensus 246 -kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F 319 (966)
T KOG4626|consen 246 -KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNF 319 (966)
T ss_pred -cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCc
Confidence 123331 12333 44555555566666666655443 3343 46677777777778888888888877654 3566
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...|+.|-.++-..|++.+|...|.....-. |+ ....+-|-..|...|++++|..+|..-.+
T Consensus 320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 320 PDAYNNLANALKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred hHHHhHHHHHHHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 4578888888888888888888887776543 33 34556677778888888888888876654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0021 Score=56.72 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=67.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGD--------GDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~--------~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
.|..+...+++.....+|+.+++.|+ .|++.+|+.++++.++..- +-+++.++..|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 45566667999999999999999999 8999999999999987432 33678889999999999999999999
Q ss_pred HHHHHhc
Q 004743 429 LSVFCNN 435 (732)
Q Consensus 429 I~~~~~~ 435 (732)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.035 Score=63.33 Aligned_cols=267 Identities=14% Similarity=0.072 Sum_probs=177.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc
Q 004743 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~ 278 (732)
.+...|++++|++.+..-. +..+|...+--.. ..+. +.|+.++|..++. ++.+. +..|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCcH
Confidence 4578899999999997633 3456665555444 4555 8899999999994 66654 43344
Q ss_pred ccccccccccccccccc-----ccCChhHHHHHHHHHHHcCCCCCccccchhhh-hh-----ccccccCCCchhhhccCC
Q 004743 279 GQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL-LD-----GRSNLERGPDDQSRKKDW 347 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~-----~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~l-i~-----~~~~~a~~~~~~m~~~g~ 347 (732)
--|..|..+ .. .....+....+|+++...- |-....- .+ ++ .+-..+......+..+|+
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 447777666 42 2235778889999887653 3322221 11 11 111233334555666664
Q ss_pred CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 004743 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMVK 411 (732)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------i~pd~~--ty~~LI~~~~~~g~~~~A~~l~~ 411 (732)
.+ .++. |-..|....+.+-..+++...... | -+|... +|.-|...|-..|+.++|++.++
T Consensus 143 Ps---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 143 PS---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred ch---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33 3445 667777666666667777766532 1 134443 44556677888999999999999
Q ss_pred HHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 004743 412 RMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490 (732)
Q Consensus 412 ~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~ 490 (732)
+-.+. .|+ +..|..--..|-+.|++++|.+.+++..... .-|...-+-....+.++|++++|.+++....+...++
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 87765 466 4567777778889999999999999988765 3467777788888899999999999999987774333
Q ss_pred ChhHHHHHHHHHh
Q 004743 491 SPSTADVIAKWFN 503 (732)
Q Consensus 491 ~p~t~~~I~~~~~ 503 (732)
..+...+-..||.
T Consensus 296 ~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 296 LSNLNDMQCMWFE 308 (517)
T ss_pred ccCHHHHHHHHHH
Confidence 3334444344443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.1 Score=55.82 Aligned_cols=247 Identities=14% Similarity=0.028 Sum_probs=143.8
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 195 RVELDMCSK--RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 195 n~lI~a~~k--~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
..++.+..+ .|++..|.++..+-.+.+-.| +.+.++.+-+- . ..|+.+++...+. +..+.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA-~-------qrgd~~~an~yL~-------eaae~ 147 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAA-Q-------QRGDEDRANRYLA-------EAAEL 147 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHH-H-------hcccHHHHHHHHH-------HHhcc
Confidence 345555554 588888888888877777555 33444444331 1 6677777777763 33222
Q ss_pred CCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChh
Q 004743 273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 273 ~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (732)
.|=.+...+=+.-.- ....|+...|..-.++..+.+-.+..
T Consensus 148 ~~~~~l~v~ltrarl------ll~~~d~~aA~~~v~~ll~~~pr~~~--------------------------------- 188 (400)
T COG3071 148 AGDDTLAVELTRARL------LLNRRDYPAARENVDQLLEMTPRHPE--------------------------------- 188 (400)
T ss_pred CCCchHHHHHHHHHH------HHhCCCchhHHHHHHHHHHhCcCChH---------------------------------
Confidence 111111112222233 55667777776666665554321111
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-------~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
.. .+....|.+.|++.....++.+|.+.|+--|+ .+|+.+++-....+..+.-...++..... .+-+...-
T Consensus 189 vl-rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~ 266 (400)
T COG3071 189 VL-RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELV 266 (400)
T ss_pred HH-HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHH
Confidence 11 23678888888888888888888887765443 36777776666655555555555554332 33344444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------------------------------HHHHHHHHHHHhcCChHH
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------------------------------PELEALLRVSVEAGKGDR 475 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~------------------------------~ty~~Li~~~~~~g~~~~ 475 (732)
.+++.-+.++|+.++|.++.++-.+++..|+. -.+.+|=..|.+.+.+.+
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 55666666667777776666665554444332 334556666677777888
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHH
Q 004743 476 VYYLLHKLRTSVRKVSPSTADVIAKWF 502 (732)
Q Consensus 476 A~~l~~~M~~~~~~~~p~t~~~I~~~~ 502 (732)
|...|+.-.+. .++.++|..+...+
T Consensus 347 A~~~leaAl~~--~~s~~~~~~la~~~ 371 (400)
T COG3071 347 ASEALEAALKL--RPSASDYAELADAL 371 (400)
T ss_pred HHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 88888766555 66666776644333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0055 Score=67.61 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=108.2
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 374 lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
++..|.. .+.+.+.+....+++.+....+++++..++...... .......|.+++|..|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 456678889999999999999999999999888766 33334556679999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHhc
Q 004743 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (732)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~~ 504 (732)
...|+-||..|||.||+.+.+.|++..|.++..+|......-+|.|+.. +..+++-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987755566667665 5544433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0042 Score=61.39 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------------CChHHHH
Q 004743 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN----------------GDVDKAC 442 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~----------------g~~~~A~ 442 (732)
..|..+|..+|+.|.+ .|.++=....++.|.+-|+.-|+.+|+.||+.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3466667777776664 456666666777777777777777777777766543 2446689
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLR 484 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~l~~~M~ 484 (732)
++++.|+..|+.||..|+..|++.+.+.+..- +..+++--|.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887643 4444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.35 Score=52.89 Aligned_cols=236 Identities=13% Similarity=0.090 Sum_probs=171.6
Q ss_pred HhcCCHHHHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--C
Q 004743 202 SKRGDVMGAIRLYDKAQREG-IK-LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--N 277 (732)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G-i~-pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d 277 (732)
-...|+++|+.+|++..+.. .+ -|..+|+-+|..--. +..-.--|..++. +. -
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~--------------idKyR 329 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN--------------IDKYR 329 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH--------------hccCC
Confidence 34679999999999999763 11 368899999877652 1112224444442 11 3
Q ss_pred ccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHH
Q 004743 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
.-|+.++-+- |+-.++.+.|...|+.-.+.+ |....-.+.
T Consensus 330 ~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN----------------------------------p~~~~aWTL 369 (559)
T KOG1155|consen 330 PETCCIIANY------YSLRSEHEKAVMYFKRALKLN----------------------------------PKYLSAWTL 369 (559)
T ss_pred ccceeeehhH------HHHHHhHHHHHHHHHHHHhcC----------------------------------cchhHHHHH
Confidence 4456666666 888888999999998776642 222222232
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
|=+-|....+...|.+-++...+-. +.|-..|=.|=.+|.-.+.+.-|+-.|++-.. ++| |.+.|.+|=.+|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhc
Confidence 4478888888899999998877653 56888899999999999999999988887554 455 5789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCChhHHHH---HHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV---RKVSPSTADV---IAKWFNS 504 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~---~~~~p~t~~~---I~~~~~~ 504 (732)
++++|..-|......|- .+...|..|-+.|-+-++.++|...|.+-.+.. ....|.|..+ +..||..
T Consensus 447 ~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k 519 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK 519 (559)
T ss_pred cHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 99999999999988773 366889999999999999999999988765531 1245555433 4445443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.048 Score=58.71 Aligned_cols=125 Identities=11% Similarity=0.097 Sum_probs=99.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-+-|--..+...|.+++-+... =++-|....+-|-+.|-+.|+-..|++.+-+--.. ++-++.|..-|-..|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 44566666777788887755432 24557889999999999999999999988664433 55577888888888888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~l~~~M~~~ 486 (732)
+++|...|+... =+.|+..-|..||..| .+.|++.+|+++++.+.++
T Consensus 642 ~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 642 SEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999999998754 3589999999998776 5689999999999999876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.022 Score=61.28 Aligned_cols=285 Identities=11% Similarity=0.083 Sum_probs=161.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
+.+.++++.|.+++..+..+..+... -..+--+++.-+--..++..|-++-+..... .-||.---.--..
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~s----aaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nkgn 498 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTAS----AAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNKGN 498 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhH----HHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcCCc
Confidence 44667788888888777544332222 1011112222222234566666665555422 2222221111100
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
-.--.|++++|.+.+. |.... +-. ....||+=+.+ -..|++++|+..|-.+...=.---
T Consensus 499 -----~~f~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 499 -----IAFANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred -----eeeecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHHHHhhH
Confidence 0003466777777663 32221 000 11114544433 345667777777655532111001
Q ss_pred ccccchhhhhhccc---cccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRS---NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (732)
Q Consensus 319 ~~ty~~~~li~~~~---~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI 394 (732)
.+.| .+.+-|. +.+..+---|....+.|+ ....+. |-+.|-+.|+-..|++.+-+--. -++.|..|..-|-
T Consensus 559 evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ 633 (840)
T KOG2003|consen 559 EVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLA 633 (840)
T ss_pred HHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHH
Confidence 1111 2222221 222222222333445554 344444 88899999999999888755432 3567888888898
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~-~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (732)
.-|....-+++|...|+.- .=++|+..-|-.+|..|. +.|+..+|+++|.....+ +.-|.....-|++.+...|.
T Consensus 634 ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl- 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL- 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-
Confidence 8999999999999999863 347899999999998665 569999999999998754 56678888888888877774
Q ss_pred HHHHHHHHHH
Q 004743 474 DRVYYLLHKL 483 (732)
Q Consensus 474 ~~A~~l~~~M 483 (732)
.++.++-+++
T Consensus 710 ~d~key~~kl 719 (840)
T KOG2003|consen 710 KDAKEYADKL 719 (840)
T ss_pred hhHHHHHHHH
Confidence 3444444444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.16 Score=53.03 Aligned_cols=243 Identities=11% Similarity=-0.010 Sum_probs=168.9
Q ss_pred cCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHH
Q 004743 179 KGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLD 257 (732)
Q Consensus 179 ~g~~~~~~~~p~~~ty-n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~ 257 (732)
.+.....+..-| .-| +.|=.+|-+-|.+.+|...|..-... .|-+.||-.|-+.|. +..+.+.|+.
T Consensus 211 a~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~ 277 (478)
T KOG1129|consen 211 AKPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALL 277 (478)
T ss_pred ccccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHH
Confidence 333334444444 444 55668889999999999999988765 456678988999999 7788899999
Q ss_pred HhhhccccchhhcccCCCCCcccccc-ccccccccccccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhcccccc
Q 004743 258 TFEVSTMNSTELGDSRDMDNNGQLDY-GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLE 335 (732)
Q Consensus 258 ~~~~~~~~s~em~~~~g~~d~~tyn~-LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a 335 (732)
+|. +-.+ .++-.|||-. +-.. +-..++.++|.+++++-.+.. |+- ...
T Consensus 278 ~~~-------~gld--~fP~~VT~l~g~ARi------~eam~~~~~a~~lYk~vlk~~--~~nvEai------------- 327 (478)
T KOG1129|consen 278 VIG-------EGLD--SFPFDVTYLLGQARI------HEAMEQQEDALQLYKLVLKLH--PINVEAI------------- 327 (478)
T ss_pred HHh-------hhhh--cCCchhhhhhhhHHH------HHHHHhHHHHHHHHHHHHhcC--Cccceee-------------
Confidence 985 2221 1223344321 1122 444567788888887765531 211 111
Q ss_pred CCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 336 RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 336 ~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
.++-.+|.-.++++-|+..+..+..-|+. +...|+.+--+|.-.+++|.++--|.+-..
T Consensus 328 --------------------Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 328 --------------------ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred --------------------eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 11445677788999999999999999975 456777777788889999999999988776
Q ss_pred cCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 416 LGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 416 ~g~~pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.--.|+. -.|-.+=......||+..|.+-|.-...+. .-+...||-|--.-.+.|++++|..+++.-.+.
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 5444543 234445555567799999999998887664 234567777776678999999999999887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.16 Score=59.55 Aligned_cols=266 Identities=12% Similarity=0.045 Sum_probs=162.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc-cCCCC
Q 004743 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD-SRDMD 276 (732)
Q Consensus 198 I~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~-~~g~~ 276 (732)
+..|-+.|+...|.+-|.+|...-=+.|..-+-.+|...+.. +-..+..+.|.+.+. .... ..+..
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~------~~~~~~~e~a~~~le-------~~~s~~~~~~ 314 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY------FITHNERERAAKALE-------GALSKEKDEA 314 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH------HHHhhHHHHHHHHHH-------HHHhhccccc
Confidence 456677788888888888887543222323333344333311 113455578888875 2222 11111
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc----------------------ccchhh--hhhccc
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH----------------------MKLNSQ--LLDGRS 332 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~----------------------ty~~~~--li~~~~ 332 (732)
..-.+|++... +.+...++.|......+..+...||.. +|.... +.-++.
T Consensus 315 ~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 315 SLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred cccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 33447888888 999999999999998888844333332 222000 111111
Q ss_pred -----cccCCCchhhhccCCCC--ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004743 333 -----NLERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405 (732)
Q Consensus 333 -----~~a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~ 405 (732)
.....+.+-.....+.| ++.-|-. +..+|...|++++|+.+|..+...-.--+.+.|--+-++|-..|..++
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 11111223333333222 3334555 778888999999999999998887656678888888999999999999
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 406 AFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML--------EHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 406 A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
|.+.++..... .|+. -.=.+|=.-+-+.|+.++|.+.++.|. ..+..|+....--..+.|.+.|+.++-
T Consensus 468 A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 468 AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999887654 3432 222334445667899999999888853 345566666666667777788887765
Q ss_pred HHHHHHHHh
Q 004743 477 YYLLHKLRT 485 (732)
Q Consensus 477 ~~l~~~M~~ 485 (732)
...-..|..
T Consensus 546 i~t~~~Lv~ 554 (895)
T KOG2076|consen 546 INTASTLVD 554 (895)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.12 Score=54.92 Aligned_cols=218 Identities=11% Similarity=-0.041 Sum_probs=138.7
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccc
Q 004743 204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~-Gi~pd~--~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~t 280 (732)
.+..+.++.-+.++... .+.|+. ..|..+=..|. +.|+.++|...|. +.... ...+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 34567778888887743 233332 33444444455 6789999998885 33322 2225556
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|+.+-.. +...|++++|...|+...+. .|+- ...|.. +-.
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~ 140 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGI 140 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHH
Confidence 8888777 99999999999999888764 3432 122334 556
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.+...|++++|.+.|+...... |+..........+...++.++|...|.+.... ..|+...+ .+. ....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCH
Confidence 6778899999999999988753 44322222222344577899999999775533 33443222 222 233566655
Q ss_pred HHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 441 A~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+ +.++.+.+. .+ .| ....|..|-..+.+.|+.++|...|++..+.
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 355555432 11 11 2346888888899999999999999998876
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.23 Score=49.69 Aligned_cols=207 Identities=13% Similarity=0.003 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
+..-|=-+|-..|+...|..-++...+.. +-+..+|.++-..|- +.|..+.|.+.|. .-+...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~ 99 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLA 99 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcC
Confidence 44455568999999999999999999764 223457777777787 7888999988884 222222
Q ss_pred CCCCCccc-cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 273 RDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 273 ~g~~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
.+-.|+.- |.+. +|..|++++|...|++-... |+-.+- .
T Consensus 100 p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~----------------------------s 139 (250)
T COG3063 100 PNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP----------------------------S 139 (250)
T ss_pred CCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc----------------------------c
Confidence 11112222 3333 67777777777777765543 221111 1
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
.||.+ +.-+..+.|+.+.|.+.|++-.+..- -..-+.-.+.+...+.|+.-.|...++.....|. ++..+.-..|..
T Consensus 140 ~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iri 216 (250)
T COG3063 140 DTLEN-LGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRI 216 (250)
T ss_pred hhhhh-hHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence 23334 33344466777777777776665421 1223455566666667777777666666555544 666666666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (732)
--+.|+.+.|-+.=..+... -|....|.
T Consensus 217 ak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 217 AKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 66666666665544444332 34444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=62.42 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=84.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
.|..|.+.++++.|.+.++.|.+.. .| .+.+-|..++.. ...+.+|+-+|+++... ..++..+.|.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 6778888888888888888888653 34 344445555443 33578888888887554 5677788888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~l~~~M~~~ 486 (732)
..|++++|.+++.+..+.. .-|..+..-+|-+....|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888888888888866543 22344555666666677776 6777888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.088 Score=59.62 Aligned_cols=211 Identities=14% Similarity=0.076 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~---Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
.+..-+-..|...|+++.|..++.+..+. +.-.+.-....++..|+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a------------------------------- 248 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA------------------------------- 248 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH-------------------------------
Confidence 56666899999999999999999998754 11111122222222222
Q ss_pred hcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCC
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
.. |...+++++|..+|+++..- ....+.. -.
T Consensus 249 -----------------~~------y~~~~k~~eAv~ly~~AL~i-------------~e~~~G~-------------~h 279 (508)
T KOG1840|consen 249 -----------------LV------YRSLGKYDEAVNLYEEALTI-------------REEVFGE-------------DH 279 (508)
T ss_pred -----------------HH------HHHhccHHHHHHHHHHHHHH-------------HHHhcCC-------------CC
Confidence 11 66677778888888777542 1111110 00
Q ss_pred CC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHh-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 004743 349 ID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVP-MNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSL---G 417 (732)
Q Consensus 349 pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi~-pd~-~ty~~LI~~~~~~g~~~~A~~l~~~M~~~---g 417 (732)
|. ..++++ |-..|++.|++++|...+++-.+ .|.. |.+ .-++.++..|+..+++++|..++..-.+. -
T Consensus 280 ~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 233445 66678999998887777665432 2332 333 34778888899999999999998865432 1
Q ss_pred CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 418 INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYPE-EPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 418 ~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~------gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
..++ .-+|+.|=..|-..|++++|.++|++.... +..+. -..++-|-..|.+.+..++|.++|.+-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 2222 357888999999999999999999987643 11222 456778888888999999999999763
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.33 Score=53.47 Aligned_cols=143 Identities=12% Similarity=0.026 Sum_probs=115.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHH
Q 004743 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (732)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf 375 (732)
..|..++|+..++++... .||..-|.....+-+.+.++.++|.+.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~----------------------------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA----------------------------------QPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred HhcccchHHHHHHHHHHh----------------------------------CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456778888888887654 3555555576788999999999999999
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004743 376 EKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (732)
Q Consensus 376 ~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (732)
+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|..|-.+|...|+..+|..-..+
T Consensus 364 ~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------- 433 (484)
T COG4783 364 KKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------- 433 (484)
T ss_pred HHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH-------
Confidence 999876 465 566677888999999999999999987655 566789999999999999999999877665
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+|...|+++.|...+..-++....-.|.
T Consensus 434 -----------~~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 434 -----------GYALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred -----------HHHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 4577899999999998888764334444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.27 Score=53.37 Aligned_cols=230 Identities=11% Similarity=-0.033 Sum_probs=131.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc
Q 004743 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (732)
Q Consensus 199 ~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~ 278 (732)
..+...|++++|.+++++..+.. +-|...+.. ...+.... ...|....+...+. . . . ...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~-~-~~~~~ 112 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-W-A-PENPD 112 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-c-C-cCCCC
Confidence 34567789999999999887652 223334432 11121100 03355555666553 1 0 0 11122
Q ss_pred c--ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHH
Q 004743 279 G--QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (732)
Q Consensus 279 ~--tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (732)
. ....+-.. +...|++++|...+++..+.. |+..... .
T Consensus 113 ~~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~--------------------------------~ 152 (355)
T cd05804 113 YWYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV--------------------------------H 152 (355)
T ss_pred cHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH--------------------------------H
Confidence 2 22333344 778899999999999988764 5543221 1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhH-H--HHH
Q 004743 357 IRLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PAL 429 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~--~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~ty-~--~lI 429 (732)
.+-..|...|++++|...+++.....- .|+. ..|..+...+...|+.++|..++++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 156677888999999999988776432 2333 3466788888899999999999988754322 1222211 2 334
Q ss_pred HHHHhcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.-+-..|..+.+.+. ......... ............++...|+.++|..++..+...
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 444445544433333 211111111 111122225666678888899999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.01 Score=58.79 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=71.7
Q ss_pred ChhhhHHHHHHHHHhc-----cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 004743 350 DNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFD 408 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----------------g~~~~A~~ 408 (732)
|..+|.. +|+.|.+. |.++-...-+..|.+-|+.-|..+|+.||+.+=+. .+-+-|.+
T Consensus 46 ~K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444445 66666544 67888888899999999999999999999976542 23467999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 409 MVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 409 l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
++++|...|+.||..|+..|++.|.+.+..
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999999888754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.091 Score=57.82 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=98.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
|+..+...++++.|.++|+++.+.. |++ ...|++.+...++-.+|.+++++.... .+-+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 5566667789999999999999885 664 445888888889999999999988854 22344455555566889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 438 VDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+.|.++.+++.+. .|+.. +|..|..+|.+.|+++.|+..++.+.-
T Consensus 250 ~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999875 46655 999999999999999999999998754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3777 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0011 Score=72.39 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=77.4
Q ss_pred CccccccccceecccCC--CCChhhHHHHHHHHHhhCCCCCccEEEeccccccCCCCCChhhHHHHHHHHHcCceeeCCC
Q 004743 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPT 681 (732)
Q Consensus 604 pyD~v~d~~nv~~~~~~--~~~~~~i~~vv~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (732)
-+-+||||.|||+-..| -|++..+...++.+.+ .++....+++..+|. ....|.. ++.++.+...+-+||+
T Consensus 12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~-~~~rd~tv~~~~~r~----e~~~p~~--~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQ-RGHRDITVLVPSWRK----EATRPDA--ILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccchhheecccceeehhhhhh-hcccCcchhchhhhh----cCCchHH--HHHHHHhccccccCCC
Confidence 45689999999966543 6889999999999988 233333333333332 1123333 7888888888888988
Q ss_pred C--------CCchHHHHHHHHhCCcEEEeCcccccccccc
Q 004743 682 G--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQL 713 (732)
Q Consensus 682 ~--------s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l 713 (732)
. ++||||+...|.+.+++|++||..||-.-..
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence 7 8999999999999999999999999987643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.14 Score=62.44 Aligned_cols=75 Identities=13% Similarity=0.169 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCh
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKG 473 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~ 473 (732)
.+.|+.+.+..+|+..... .+-..-.|+..|.+=.++|+.+.++.+|++....++.|-- ..|...|..=-..|+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 3455555555555554443 2223445555555555555555555555555555554432 3344444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.18 Score=51.40 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=110.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|...|++..... |+.... ...+.. +-..|-+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 778899999999999886642 332111 012223 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChh-hHH----------------
Q 004743 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (732)
Q Consensus 374 lf~~M~~~gi~pd~~--ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~pd~~-ty~---------------- 426 (732)
.++++.+..-..... ++..+-.++... |+.++|.+.|+.+... .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998753221122 333333344433 7788999999998765 24322 111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 -PALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 -~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-..|.+.|+.++|...++...+..- ......+..+..++.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233557788999999999999886631 223567889999999999999999999998776
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.6 Score=49.63 Aligned_cols=206 Identities=12% Similarity=-0.000 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|..+=..+.+.|+.++|...|++..+.. +-+...|+.+-..+. ..|++++|...|+ ...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~Al~ 126 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT----------QAGNFDAAYEAFD-------SVLE 126 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHH
Confidence 446666667889999999999999998753 235678888888888 8899999999996 3322
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
. .-.+...|..+-.. +...|++++|.+.|+.-.+. .|+-...
T Consensus 127 l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~--~P~~~~~----------------------------- 168 (296)
T PRK11189 127 L-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQD--DPNDPYR----------------------------- 168 (296)
T ss_pred h-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHHH-----------------------------
Confidence 1 22244556666666 78899999999999887664 2332111
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C----CCC-ChhhH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-G----INP-RLRSY 425 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g----~~p-d~~ty 425 (732)
.+....+...++.++|.+.|++..... .|+...+ .+ .....|+.+++ +.+..+.+. . +.| ....|
T Consensus 169 ----~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~ 239 (296)
T PRK11189 169 ----ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETY 239 (296)
T ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHH
Confidence 101122335678999999997755432 3433222 22 22345666554 355555432 1 112 23578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
..+=..+.+.|+.++|...|++..+.+ .||.+.+-..
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~ 276 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA 276 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 888889999999999999999998765 3466665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.079 Score=55.91 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
+|-. ++...-+.+.++.|..+|.+..+.+ +...+....++|.-+ ..++.+.|.++|+...+. +.-+...|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555 7788888889999999999998653 345555555555433 356777899999998876 55677788889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~----~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+.|+.+.|..+|+..... .|.. ..|...|+.=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999865 3444 48999999999999999999999999886
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.2 Score=49.03 Aligned_cols=286 Identities=10% Similarity=0.036 Sum_probs=177.1
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++...|.++|+.-. ...|+...|++.|+.=.+...++.|..+|++.+-. .|++.+|--...-=-
T Consensus 153 ~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~---- 218 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEE---- 218 (677)
T ss_pred HhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHH----
Confidence 4578899999998741 46788899999999999999999999999998853 488888765554444
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
+.|.++.|..++. ...+..|-. +...+++.-.- -.....++.|.-+|.--... .|..
T Consensus 219 ------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk~ 277 (677)
T KOG1915|consen 219 ------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPKG 277 (677)
T ss_pred ------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 7788888888774 222211111 11112222111 11223334444444322221 2222
Q ss_pred cccchhhhhhccc-----------------cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 004743 320 HMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (732)
Q Consensus 320 ~ty~~~~li~~~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (732)
.+- .|-.++. .+-+.-+..+..+ -..|-.+|.- .+..--..|+.+...++|+.....
T Consensus 278 rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan- 351 (677)
T KOG1915|consen 278 RAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN- 351 (677)
T ss_pred cHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc-
Confidence 221 1111111 1111122223222 1224456666 666666778999999999988764
Q ss_pred CCCCH--HHHHHHHH-----HH---HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCChHHHHHHHHHH
Q 004743 383 VPMNE--ASLTAVGR-----MA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEHM 448 (732)
Q Consensus 383 i~pd~--~ty~~LI~-----~~---~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~----~~g~~~~A~~l~~~M 448 (732)
++|-. .-|--.|- +| ....+++.+.+++....+. ++-...||.-+--.|+ ++.++..|.+++...
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45521 11221111 11 2467888889999888773 5556778877666665 457888888888776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+ |.-|-..+|-..|..=.+-+.+|+...++++..+. +|...
T Consensus 431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c 471 (677)
T KOG1915|consen 431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENC 471 (677)
T ss_pred h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhh
Confidence 5 66788888888888888889999999999888876 54444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.071 Score=43.87 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=37.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+...|++++|..+|++..+.. +.+...+..+...+...|++++|.+.++...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34444455555555555444332 1122344444444444455555555554443331 112233334444444444444
Q ss_pred HHHHHHHHH
Q 004743 440 KACSVEEHM 448 (732)
Q Consensus 440 ~A~~l~~~M 448 (732)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.18 Score=46.29 Aligned_cols=97 Identities=8% Similarity=-0.032 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
.....+...+...|+.++|...|+.....+ ..+...|..+-..|.+.|+.++|..+++.....+ ..+...+..+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555666667777777666665542 2244555556666666677777777666665543 23344555555566
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|+.++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6677777777777666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.26 Score=49.15 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=96.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH-HHhcCC--hHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSV-FCNNGD--VDK 440 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~-~~~~g~--~~~ 440 (732)
.++.+++...++...... +.|...|..|-..|...|+.++|...|+...+. .| +...+..+-.+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 445566666666655543 568889999999999999999999999987765 34 45566665555 367777 599
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHH
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVI 498 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~I 498 (732)
|.+++++..+.. .-+...+..|-..+.+.|++++|...++++.+. .+..+ -+.+|
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i 184 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHH
Confidence 999999998775 225667777888889999999999999999876 33333 45555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=48.82 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
+-..+...|++++|...|....... +.+...|..+-..+.+.|++++|...|+...+.. ..+...+..+-.++.+.|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444455555555555555544331 1234444444445555555555555555555432 2234444445555555555
Q ss_pred hHHHHHHHHHHHhc
Q 004743 473 GDRVYYLLHKLRTS 486 (732)
Q Consensus 473 ~~~A~~l~~~M~~~ 486 (732)
.++|...|+.....
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.15 Score=46.91 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=82.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+...+.+.|++++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++...+.+ +.+...|..+-..|...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 5677888999999999999988764 4577888899999999999999999999877664 3445666667778999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
.++|...|+...+. .|+...+..+
T Consensus 101 ~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 101 PESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred HHHHHHHHHHHHHh--ccccchHHHH
Confidence 99999999988765 3665554433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.092 Score=55.62 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~ 435 (732)
..+...|++++|++++..- -+.-.....+..|.+.+++|.|.+.++.|.+. ..|.. -.-+..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCc
Confidence 4566789999999888642 35566677889999999999999999999865 33433 3334444443 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hH-HHHHHHHHhchH
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-ST-ADVIAKWFNSKE 506 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t-~~~I~~~~~~~~ 506 (732)
+.+.+|+.+|+++.+. ..++..+.|.+.-+....|++++|.+++.+.... .+.. +| .+.|......|+
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCC
Confidence 4799999999998654 5688899999999999999999999999987654 3333 33 444443333333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.04 Score=57.84 Aligned_cols=194 Identities=9% Similarity=-0.008 Sum_probs=124.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccc---------cccCCCchhhhccCCCCChhhhHHHHHHHHHh
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (732)
|.+.+++.+|..+..++... .|-..... |.+..++. +.|...|...-..+..-|.+.-.-.+-+.+.-
T Consensus 295 yL~q~dVqeA~~L~Kdl~Pt--tP~EyilK-gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDPT--TPYEYILK-GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred ecccccHHHHHHHHhhcCCC--ChHHHHHH-HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 66777777777777765321 22222111 11111111 23333444444445554544444446677777
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCChHHHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACS 443 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~~g~~~~A~~ 443 (732)
..++++.+-.++..+.-=..-|.+.|| +..+++..|...+|+++|-.+....+ -|..+|-+++ .+|.+++..+.|++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 788899888888888765566777776 77899999999999999976554433 3566776654 57889999999998
Q ss_pred HHHHHHHCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 444 VEEHMLEHGVYPEEPELEA-LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~-Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
++-.|.. ..+..+.-. +-..|-+.+.+--|-+-|+.+... .|+|+-|.-
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 8766542 223333333 335567788888888888888777 888876643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.18 Score=57.30 Aligned_cols=244 Identities=11% Similarity=-0.006 Sum_probs=149.9
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~-~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (732)
.+.++|+++|+........+ --+...|.+++--+-+.-.+ ..|.++.+.+ +-.+.||-++=++|+
T Consensus 367 ~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS----- 432 (638)
T KOG1126|consen 367 IEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS----- 432 (638)
T ss_pred HHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh-----
Confidence 46789999999985432111 22446777776554332111 1233333332 234578888887777
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
-.++.+.|+..|. +...- +....++|+.+=.- +.....+|.|...|.. .+..|...|
T Consensus 433 -----LQkdh~~Aik~f~------RAiQl--dp~faYayTLlGhE------~~~~ee~d~a~~~fr~----Al~~~~rhY 489 (638)
T KOG1126|consen 433 -----LQKDHDTAIKCFK------RAIQL--DPRFAYAYTLLGHE------SIATEEFDKAMKSFRK----ALGVDPRHY 489 (638)
T ss_pred -----hhhHHHHHHHHHH------Hhhcc--CCccchhhhhcCCh------hhhhHHHHhHHHHHHh----hhcCCchhh
Confidence 6677788888884 21111 11133445544444 7778888888888763 355677778
Q ss_pred chhhhhhccc---------cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 323 LNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 323 ~~~~li~~~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
+ ..-|+. +.|+.-|.... .+.|.....-..+-..+-+.|+.|+|+++|++.....- -|...---.
T Consensus 490 n---AwYGlG~vy~Kqek~e~Ae~~fqkA~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~ 563 (638)
T KOG1126|consen 490 N---AWYGLGTVYLKQEKLEFAEFHFQKAV--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHR 563 (638)
T ss_pred H---HHHhhhhheeccchhhHHHHHHHhhh--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHH
Confidence 5 222332 22222233222 24454333222245667788999999999999876542 233333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
+..+...++.++|++.++++++. .|+ ...|..+-..|-+.|+.+.|+.-|.-|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 55667789999999999999875 455 5667777788999999999998888776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.65 Score=55.05 Aligned_cols=276 Identities=13% Similarity=0.036 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-----HHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~---Gi~pd~~-----tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~ 263 (732)
...|.+=.-.-..|++..|...|...... -..+|.. |---.|..|.. ..++.+.|.+++.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E---------~l~~~~~A~e~Yk--- 520 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE---------ELHDTEVAEEMYK--- 520 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH---------hhhhhhHHHHHHH---
Confidence 67888888888999999999999998754 2334442 22222333331 3456778888874
Q ss_pred ccchhhcccCCCCCcccccccccccccccccccc-------CChhHHHHHHHHHHH-cCCCCCccccchhhhhhc--ccc
Q 004743 264 MNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YRFDDLDSTFNEKEN-LGQFSNGHMKLNSQLLDG--RSN 333 (732)
Q Consensus 264 ~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~-------g~~~~A~~lf~eM~~-~gi~Pd~~ty~~~~li~~--~~~ 333 (732)
+..+. |-.-|++ |.+. +...+|...+.+... ....|++.+|- |-+--+ ...
T Consensus 521 ----~Ilke--------hp~YId~------ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~-G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 521 ----SILKE--------HPGYIDA------YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL-GNLHLKKSEWK 581 (1018)
T ss_pred ----HHHHH--------CchhHHH------HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH-HHHHHhhhhhc
Confidence 22221 2233444 3333 456677777766544 34668887774 111111 113
Q ss_pred ccCCCchhhhccCCC-CChhhhHHHH-----HHHHH--------hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004743 334 LERGPDDQSRKKDWS-IDNQDADEIR-----LSEDA--------KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (732)
Q Consensus 334 ~a~~~~~~m~~~g~~-pd~~tyn~~l-----I~~~~--------k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (732)
.|..-|.....+-.. +| +|+.+- +..+- ..+..++|+++|.+..... +-|...=|-+--.++.
T Consensus 582 ~a~k~f~~i~~~~~~~~D--~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTD--AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred ccccHHHHHHhhhccCCc--hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 444444444332111 33 333321 22111 2335688999999877653 4577777888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004743 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYY 478 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (732)
.|++.+|.++|.+..+... -+.-+|-.+-++|...|++..|.++|+...+. .-.-+....+.|-+++-+.|.+.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999988754 23446677889999999999999999987654 445567788889999999999999999
Q ss_pred HHHHHHhccCCCChh--HHHHHHHHHhc
Q 004743 479 LLHKLRTSVRKVSPS--TADVIAKWFNS 504 (732)
Q Consensus 479 l~~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (732)
.+..-+.. .|+.. .+++..-.++.
T Consensus 738 ~ll~a~~~--~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 738 ALLKARHL--APSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHh--CCccchHHhHHHHHHHHH
Confidence 88777665 55554 35553333333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.21 Score=46.96 Aligned_cols=121 Identities=9% Similarity=0.016 Sum_probs=93.5
Q ss_pred CchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004743 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (732)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (732)
+......+.+..|...+.. +-..+...|++++|...|+...... +.+...|..+-.++...|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444444444444544 5677888999999999999988764 4578899999999999999999999999988752
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 418 ~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
+.+...+..+-.++...|+.++|.+.|+...+. .|+...|..+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~ 131 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEI 131 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 346677888888899999999999999998765 4766555533
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.98 Score=48.93 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSV 468 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~--~ty~~Li~~~~ 468 (732)
.+-..+...|++++|...+++..+.. +.+...+..+-..|...|++++|...+++.....- .|+. ..|..+-..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445555666666666666655432 12233444455555566666666666655543311 1222 22334555556
Q ss_pred hcCChHHHHHHHHHHH
Q 004743 469 EAGKGDRVYYLLHKLR 484 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~ 484 (732)
..|+.++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.096 Score=43.05 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
+|..+...+...|++++|..++++..+.. ..+...+..+-..+...|++++|.+.++...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2334667778888889999999999999988764 334467888888999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|+.++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.2 Score=47.06 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=86.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR--SYGPALSVF 432 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--ty~~lI~~~ 432 (732)
++..+ ..++...+.+.++.+.... +.+ ....=.+-..+...|++++|...|+......-.|+.. ..-.|-..+
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 55555 4788899999999998864 222 1222234467788999999999999998876333322 333356777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
...|++++|...++......+ ....+..+=+.|.+.|+.++|...|+.
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 889999999999977544333 334556677788999999999998875
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.92 Score=55.77 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=142.1
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCC----CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~ 323 (732)
..+.++.|+.++. +....-.+. -.-.|-++++. ..--|.-+...++|++..+. +
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqy---------c 1527 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQY---------C 1527 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHh---------c
Confidence 5677888888885 322211222 12236666666 44445556667777766543 1
Q ss_pred hhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004743 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (732)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (732)
|..+....|..-|.+.++.++|-++|+.|.++= .-....|...+..+.+..+.
T Consensus 1528 --------------------------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1528 --------------------------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred --------------------------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHH
Confidence 222222338899999999999999999999862 24567899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 404 DMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 404 ~~A~~l~~~M~~~g~~pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
+.|..++.+-.+. .|. +....-....-.+.|+.+.+..+|+.....- .--...|+..|+.=.++|+.+.+..+|
T Consensus 1581 ~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1581 EAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999876543 354 2223334444568899999999999988653 223567999999999999999999999
Q ss_pred HHHHhccCCCChh-HHHHHHHHHhc
Q 004743 481 HKLRTSVRKVSPS-TADVIAKWFNS 504 (732)
Q Consensus 481 ~~M~~~~~~~~p~-t~~~I~~~~~~ 504 (732)
++.... ..++. +--....|...
T Consensus 1658 eRvi~l--~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1658 ERVIEL--KLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHhc--CCChhHhHHHHHHHHHH
Confidence 999998 55665 22224555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.087 Score=57.97 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=94.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 667789999999999998874 543322 5566666778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
++++.... .+-|......-.+.|.+.++.+.|..+.+++... .|+. .+|..|..+|.+.|+++.|+..++.|.
T Consensus 222 ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99888854 2446777777778888999999999999998865 5664 599999999999999999999998875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.33 Score=51.25 Aligned_cols=225 Identities=16% Similarity=0.106 Sum_probs=126.9
Q ss_pred CCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCc
Q 004743 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (732)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~ 244 (732)
+-+.|++|+-.+. ++.|. .-.| ||--|.+.+|+.+|..+..++. -..| |.-++++...+..| .
T Consensus 269 ngEgALqVLP~L~--------~~IPE-ARlN-L~iYyL~q~dVqeA~~L~Kdl~--PttP----~EyilKgvv~aalG-Q 331 (557)
T KOG3785|consen 269 NGEGALQVLPSLM--------KHIPE-ARLN-LIIYYLNQNDVQEAISLCKDLD--PTTP----YEYILKGVVFAALG-Q 331 (557)
T ss_pred CCccHHHhchHHH--------hhChH-hhhh-heeeecccccHHHHHHHHhhcC--CCCh----HHHHHHHHHHHHhh-h
Confidence 4455666665542 12333 2333 4446788999999998876543 1223 44555555433211 0
Q ss_pred ccCCCCChhhHHHHhhhccccchhhcccCCCC-Cccc-cccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 245 ~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
.-+....++-|.+.|. |...++.. |.+. --++-.+ +--..++|+.+-.++..+.-=.--|.+-|
T Consensus 332 e~gSreHlKiAqqffq--------lVG~Sa~ecDTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQ--------LVGESALECDTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hcCcHHHHHHHHHHHH--------HhcccccccccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 0012222445666663 54443433 4332 1122222 22333445554444444333222233333
Q ss_pred chhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcC
Q 004743 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA-VGRMAMSMG 401 (732)
Q Consensus 323 ~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~-LI~~~~~~g 401 (732)
| +-.+++..|...+|+++|-......+ .|..+|.+ |.++|.+++
T Consensus 398 N----------------------------------~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 398 N----------------------------------LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK 442 (557)
T ss_pred H----------------------------------HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC
Confidence 2 77899999999999999977654443 35566654 567888999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004743 402 DGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (732)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (732)
.++.|++++-.|.. ..+..+.--+| +-|-+++++--|-+.|++++.. .|+..-|
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 99999998865542 23344444444 4677889998888888888754 4555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.5 Score=51.73 Aligned_cols=285 Identities=10% Similarity=0.028 Sum_probs=154.3
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~ 241 (732)
.|+.++|.+++.|.+.+- +.+...|-+|=..|-..||...++..+ |....+.|. ..-|-.+-....
T Consensus 152 rg~~eeA~~i~~EvIkqd-------p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~---- 218 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-------PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSE---- 218 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHH----
Confidence 399999999999986542 233478999999999999999998766 443344443 344444444444
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc-ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~-tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
+.|.+++|.-.|. +-+... -.+.- .|+- ...|-+.|+...|..-|.+|.+.-- |...
T Consensus 219 ------~~~~i~qA~~cy~------rAI~~~--p~n~~~~~er-------s~L~~~~G~~~~Am~~f~~l~~~~p-~~d~ 276 (895)
T KOG2076|consen 219 ------QLGNINQARYCYS------RAIQAN--PSNWELIYER-------SSLYQKTGDLKRAMETFLQLLQLDP-PVDI 276 (895)
T ss_pred ------hcccHHHHHHHHH------HHHhcC--CcchHHHHHH-------HHHHHHhChHHHHHHHHHHHHhhCC-chhH
Confidence 6677777777764 111111 00100 0110 1115556777777777766665421 1111
Q ss_pred ccc--------------------hhhhhhccc------------------------cccCCCchhhhccCCCCC------
Q 004743 321 MKL--------------------NSQLLDGRS------------------------NLERGPDDQSRKKDWSID------ 350 (732)
Q Consensus 321 ty~--------------------~~~li~~~~------------------------~~a~~~~~~m~~~g~~pd------ 350 (732)
-.. ...+..++. +.+......+...-.++|
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 000 000000000 111112222222111111
Q ss_pred ----------------hhhhHHH---HHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004743 351 ----------------NQDADEI---RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDM 409 (732)
Q Consensus 351 ----------------~~tyn~~---lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l 409 (732)
..+|+.- ++-++.+....+....+........+ .-++..|.-+.++|...|++.+|..+
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111111 12223333333333344444444442 23445566777788888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 410 ~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
|..+...-..-+...|-.+=.+|-..|..+.|.+.|+..+.. .|+ ...--+|-..+-+.|+.++|.+.+..|.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 888776654455667777777777888888888888877654 233 2223344455677788888888888775
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.61 Score=46.73 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=97.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g 436 (732)
|--+|...|+...|.+-+++-.+.. +-+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+ -...|.-=..+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4468889999999999999988764 335678999999999999999999999886654 344 233444445578999
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.++|+..|+.....--.|. ..||.-+--+..+.|+.+.|...|++-.+.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 99999999999887643332 346666666678899999999999988776
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.5 Score=50.02 Aligned_cols=297 Identities=12% Similarity=0.058 Sum_probs=167.9
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++..+...+|.+..+.---+...-+|. ..|..+-+.|-.+|+++.|..+|+...+-..+- +.-...+=-.|+....
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemEl 436 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMEL 436 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHH
Confidence 34566777788888755322222223444 678888999999999999999999988655432 2222222223332221
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccC------CCCCc--------cccccccccccccccccccCChhHHHHHH
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDNN--------GQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~------g~~d~--------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (732)
+..+++.|..++.-- ..+.... |-.++ ..|.-.++- .-..|-++.-..++
T Consensus 437 ------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vY 500 (835)
T KOG2047|consen 437 ------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVY 500 (835)
T ss_pred ------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHH
Confidence 445567777766311 0011110 10111 124334444 44456777888888
Q ss_pred HHHHHcCCCCCccccchhhhhhc--cccccCCCchhhhccCCC----CCh-hhhHHHHHHHHHhcc--CHHHHHHHHHHH
Q 004743 308 NEKENLGQFSNGHMKLNSQLLDG--RSNLERGPDDQSRKKDWS----IDN-QDADEIRLSEDAKKY--AFQRGFEIYEKM 378 (732)
Q Consensus 308 ~eM~~~gi~Pd~~ty~~~~li~~--~~~~a~~~~~~m~~~g~~----pd~-~tyn~~lI~~~~k~g--~~~~A~~lf~~M 378 (732)
+.+....+.-..+..|.+.+++- |..++.+++ .+|+. |++ ..||+.|...-.+.| .+++|.++|++-
T Consensus 501 driidLriaTPqii~NyAmfLEeh~yfeesFk~Y----ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 501 DRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY----ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH----HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 88888776544444442222221 112222211 23332 344 346664544444444 789999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 004743 379 CLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (732)
Q Consensus 379 ~~~gi~pd~~ty~~LI~~~~--~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (732)
.+ |++|.-.-+--|+-+-. +.|....|..++++.- .++++. ...||..|.-....=-+-...++|++.++. -
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--L 652 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--L 652 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--C
Confidence 88 87775543333332222 3688888999998843 345554 457888877555554455566777776655 5
Q ss_pred CCHHHHHHHHHHH---HhcCChHHHHHHHHHHH
Q 004743 455 PEEPELEALLRVS---VEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 455 pd~~ty~~Li~~~---~~~g~~~~A~~l~~~M~ 484 (732)
||...-..-|+.- ++-|.+++|..++..-.
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 6655544444332 67788888888876543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.5 Score=48.27 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=85.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
..+.|..+++-|.+.+++|.+-. +..|.+-|..++.+ .+.+.+|+-+|++|-.+ ..|+.-+-|-...++...
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh
Confidence 34456667888999999998643 66777766666654 55678899999998764 778888888888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~l~~~M~~~ 486 (732)
|++++|..++++...+.-. +..|..-+|-.-...|.. +-..+.+.+++..
T Consensus 221 ~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999988876532 344444444444444543 4455666666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.79 Score=48.06 Aligned_cols=221 Identities=7% Similarity=-0.094 Sum_probs=150.8
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAA 240 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL-~~~~~~~ 240 (732)
+.+-..+|++-|..-..+ .|-+.||--|-.+|.+-..+..|+.+|.+-.+. .|-.+||-.=+ +.+-
T Consensus 235 rLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e--- 301 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE--- 301 (478)
T ss_pred HhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH---
Confidence 456777888888775332 233368888999999999999999999987753 46666664322 2222
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..++.++|.+++. +..+. .-.|+...-.+-.+ |--.++.+-|+..+..+.+.|+....
T Consensus 302 -------am~~~~~a~~lYk-------~vlk~-~~~nvEaiAcia~~------yfY~~~PE~AlryYRRiLqmG~~spe- 359 (478)
T KOG1129|consen 302 -------AMEQQEDALQLYK-------LVLKL-HPINVEAIACIAVG------YFYDNNPEMALRYYRRILQMGAQSPE- 359 (478)
T ss_pred -------HHHhHHHHHHHHH-------HHHhc-CCccceeeeeeeec------cccCCChHHHHHHHHHHHHhcCCChH-
Confidence 3467888888885 33332 11145445555566 78889999999999999999864222
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAM 398 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~--~ty~~LI~~~~ 398 (732)
-|++ +=-+|.-.+++|-++--|+.-...--.|++ ..|-.|=....
T Consensus 360 --------------------------------Lf~N-igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 360 --------------------------------LFCN-IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred --------------------------------HHhh-HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence 2223 323344467888888888877654444443 23545555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..|++..|.+.|+-..... .-+...||.|----.+.|++++|..++......
T Consensus 407 ~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred eccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7899999999998766542 234567888777788999999999999887654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.6 Score=44.27 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=60.2
Q ss_pred cCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhH
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSY 425 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~ty 425 (732)
|+.++|.+.|++..... |+. ..+ -.+-..|.+.|+.++|...+++..... -......+
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 55667777777766542 221 111 134566788999999999999987652 11235678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..+..++.+.|+.++|...++.+...
T Consensus 207 ~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 207 ARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=47.11 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
|+.++.++|-++++.|+++....+++..= |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45677777777777777777777765432 33222100 0000 1122345677777777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcc-CCCChhHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTSV-RKVSPSTADVIAKWFNS 504 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~~-~~~~p~t~~~I~~~~~~ 504 (732)
+|+..|++..|+++++...+.- +.++..+|..+..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 7777777777777777766552 22333367666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=2.1 Score=51.77 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=129.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhcccc
Q 004743 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265 (732)
Q Consensus 187 ~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~ 265 (732)
.+.+...|-.||..+-..+++++|.++.++-.+. .-.+...-|..+| +. ..++..++.-+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l--~~----------q~~~~~~~~lv------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGIL--SL----------SRRPLNDSNLL------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHH--HH----------hhcchhhhhhh-------
Confidence 3456678999999999999999999999966543 2223333333332 22 11222222211
Q ss_pred chhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc
Q 004743 266 STELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (732)
Q Consensus 266 s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~ 345 (732)
.+++. .....++..+.-+...|...+-
T Consensus 88 -----------------~~l~~------~~~~~~~~~ve~~~~~i~~~~~------------------------------ 114 (906)
T PRK14720 88 -----------------NLIDS------FSQNLKWAIVEHICDKILLYGE------------------------------ 114 (906)
T ss_pred -----------------hhhhh------cccccchhHHHHHHHHHHhhhh------------------------------
Confidence 12222 3344444444444444433211
Q ss_pred CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
+...+.+ +-.+|-+.|+.++|..+++++.+.. +-|..+.|-+-..|+.. ++++|.+++..-...- .+..-|
T Consensus 115 ----~k~Al~~-LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~--i~~kq~ 185 (906)
T PRK14720 115 ----NKLALRT-LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF--IKKKQY 185 (906)
T ss_pred ----hhHHHHH-HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--Hhhhcc
Confidence 1111223 6788889999999999999999877 56788899999999988 9999999888765541 122222
Q ss_pred HHHHH---HHHhc--CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 426 GPALS---VFCNN--GDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 426 ~~lI~---~~~~~--g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+.. -+|.. .+++.=..+.+.+... |..--+.++-.|-..|-...+++++..+|+.+.+.
T Consensus 186 ~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 186 VGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred hHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 22222 11111 2233333333333322 33344455666667778888899999999998876
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.35 Score=42.83 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEAL 463 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~~L 463 (732)
+-.+...+.+.|+.++|.+.|..+.... |+ ...+..+-..+.+.|+++.|...|+.+....- ......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3344444555555666666555554431 21 12333355555555666666666665554310 0112334444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-.++.+.|+.++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55555666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.45 Score=54.71 Aligned_cols=208 Identities=8% Similarity=-0.032 Sum_probs=146.8
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.+.+.|-..+|..+|+.+ ..|--+|.+|+..|+-..|..+..+-.+ -+||+..|..|.+...
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 445777888999999999 8999999999999999999998887776 4789999988888776
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC-CCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-i~P 317 (732)
..--+++|.+++. ..+.+. -..++-+ ....+++.++.+.|+.-.+.. +.
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq- 518 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQ- 518 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccc-
Confidence 3344788888885 111110 0001111 233678888888887543321 11
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRM 396 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~ 396 (732)
..+|-. +=.+.-+.++++.|.+-|..-.. ..|| .-.||.+-.+
T Consensus 519 ---------------------------------~~~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 519 ---------------------------------LGTWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred ---------------------------------hhHHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 112222 22344466788888888876553 2454 5679999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
|.+.|+-.+|+..+.+-.+.. .-+...|-.-+....+.|.+++|++.+..|...
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999999999988776 444555655666678899999999998887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.7 Score=46.55 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=89.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChh--hHHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRLR--SYGPALSVF 432 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~pd~~--ty~~lI~~~ 432 (732)
.+.-|.+++++++..|++-+.+ ++-..-.||-.-..+...++++.|.+.|+..... ++..+.. .--++|..-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 3445667999999999998876 4545678898999999999999999999876643 1111111 111222211
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
=.+++..|.+++....+.. .-....|.+|-..-.+.|++++|.++|++-..-
T Consensus 515 -wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2389999999998887653 224567889999999999999999999986543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.64 Score=48.09 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=105.4
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhh
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~l 327 (732)
+.|+.+.|.+-|. +...-+|..+.+.||.-+.- | +.++.+.|+++..|+.++|++- ..-++.|..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH------y-~~~qyasALk~iSEIieRG~r~-HPElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH------Y-SSRQYASALKHISEIIERGIRQ-HPELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH------H-hhhhHHHHHHHHHHHHHhhhhc-CCccCccce
Confidence 8899999999995 44444477788889887655 4 6789999999999999999642 122221111
Q ss_pred hhccccccCCCchhhhccCCCCChhhh-HHHHH-------HHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004743 328 LDGRSNLERGPDDQSRKKDWSIDNQDA-DEIRL-------SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAM 398 (732)
Q Consensus 328 i~~~~~~a~~~~~~m~~~g~~pd~~ty-n~~lI-------~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~ 398 (732)
.+|-- ++. .-|..+. -+.++ .-+.+.|+.+.|.+-+-.|.-+ .-..|.+|...+.-.-.
T Consensus 221 tegiD--vrs----------vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~ 288 (459)
T KOG4340|consen 221 TEGID--VRS----------VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM 288 (459)
T ss_pred eccCc--hhc----------ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc
Confidence 11111 000 0011110 01122 2345677888888888888643 33457777665432222
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
.+++-+..+-+.-+....- --..||..++-.||++.-++.|-.++.+-
T Consensus 289 -~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 289 -DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred -cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3444444444444444322 23578999999999999999999888763
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.24 E-value=3.5 Score=45.40 Aligned_cols=126 Identities=10% Similarity=-0.034 Sum_probs=106.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-+-|+-.++-++|...|+.-..-+ +-....|+-|=.-|....+...|.+-++.-.+- .+-|-+.|-.|=++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 4467778889999999999887654 234577888888999999999999999987766 45678899999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..-|+-.|++..+.. .-|...|.+|=++|.+.++.++|.+.|..-..-
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999877543 456889999999999999999999999988765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.63 Score=41.16 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~~ 431 (732)
+...+.+.|++++|.+.|+++....- ......+..+...+.+.|++++|.+.|+...... |+ ...+..+-..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHH
Confidence 56677889999999999999987531 1123466678999999999999999999988652 33 3456667778
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 004743 432 FCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~g 452 (732)
+.+.|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999998774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.23 Score=56.63 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=51.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
.|..|.++|+++.|.++-.+. .|-......|-+-..-+-+.|++.+|++++-.+ | .|+ -.|.+|-+.|.
T Consensus 797 ai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~ 865 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGL 865 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCc
Confidence 444555555555555443332 222233333444444444455555555444221 1 122 24555556665
Q ss_pred hHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+...++.+.-. |+ ..|--.+-.-|-..|++..|..-|-+-.
T Consensus 866 ~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 866 DDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred chHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 555555544321 22 1233444455566777777777665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.95 Score=53.80 Aligned_cols=196 Identities=12% Similarity=0.068 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccc
Q 004743 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (732)
Q Consensus 205 g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~L 284 (732)
+.+++|.++-++-. .+..|+.|-.+-. ..|.+.+|++-|- .-.|...|--+
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence 56666666554432 2456788877777 6788888888873 22266668888
Q ss_pred cccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHh
Q 004743 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (732)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (732)
|+. ..+.|.+++..+.+..-+++.-.|.+-+- ||-+|++
T Consensus 1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e-----------------------------------Li~AyAk 1178 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE-----------------------------------LIFAYAK 1178 (1666)
T ss_pred HHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH-----------------------------------HHHHHHH
Confidence 898 99999999999888666665555655443 5556666
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------cCCCCChhh
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS--------------------LGINPRLRS 424 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~--------------------~g~~pd~~t 424 (732)
.+++.+-++++. -||..-.-.+=+-|...|.++.|.-++...-. ..-.-+..|
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~kt 1251 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKT 1251 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhH
Confidence 665544433321 24444444444444444444444433322110 001124556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
|--+-.+|...+.+..| .|-...+........-||.-|-..|.+++...+++.
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 66666666655555433 233333445566677788888888888888777664
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.25 Score=45.32 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=45.9
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 004743 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-HGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 417 g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-~gv~pd~~ty~~Li~~~~~~ 470 (732)
.+.|+..+..+++.+|+.+|++..|+++.+...+ -++..+..+|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4779999999999999999999999999998765 47888889999998866443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.81 E-value=1 Score=45.88 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=97.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
......+.|++..|...|.+...- -++|..+||.+=-+|.+.|+.++|..-|.+-.+.-. -+...+|.|--.|.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCC
Confidence 566777889999999999998764 378999999999999999999999999988766522 234556667777888999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
.+.|..++.+....+-. |...-.-|.-+....|++++|..+-..-
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999998877643 4455556666778899999998886553
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.59 Score=47.75 Aligned_cols=140 Identities=16% Similarity=0.168 Sum_probs=101.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~ 435 (732)
.-|++.|++++|++.... |-.......| ...+.+..++|-|.+.++.|..- -+..|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~----~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL----GENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhc----cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 568899999999998876 2222333333 33445777899999999999876 355666655555554 4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhH-HHHHHHHHhchHHHHh
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARL 510 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t-~~~I~~~~~~~~~~~a 510 (732)
+.+..|+-+|++|-++ ..|+..+.+-+..++...|++++|..++++...+.-. .|+| .+.|......|+..++
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence 6899999999999864 4799999999999999999999999999998877222 2443 5556655555554333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.7 Score=48.30 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=99.4
Q ss_pred cCCCCChhhhHHHHHHHHHhc-----cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHH
Q 004743 345 KDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMV 410 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g--------~~~~A~~l~ 410 (732)
.+...|...|.. .+.+.... +..+.|.++|++..+. .|| ...|..+.-++.... ++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344456666766 66554432 2377999999998876 455 344555444333221 123334444
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 004743 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (732)
Q Consensus 411 ~~M~~~-g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~ 489 (732)
...... ....+...|.++--.+...|+.++|...+++..+.+ |+...|..+-..|...|+.++|.+.+++-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 332222 233345677776555566799999999999998876 78889999999999999999999999987766 6
Q ss_pred CChhHHHHHHH
Q 004743 490 VSPSTADVIAK 500 (732)
Q Consensus 490 ~~p~t~~~I~~ 500 (732)
|...||-.+..
T Consensus 484 P~~pt~~~~~~ 494 (517)
T PRK10153 484 PGENTLYWIEN 494 (517)
T ss_pred CCCchHHHHHh
Confidence 66667755443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.37 Score=49.46 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g----------------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
+.++=....++.|++.|+.-|+.+|+.||+.+=+.. +-+-+..++++|+.+|+.||-.+--.||
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344444455556666666666666666665554432 2234778999999999999999999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHHh
Q 004743 465 RVSVEAGKG-DRVYYLLHKLRT 485 (732)
Q Consensus 465 ~~~~~~g~~-~~A~~l~~~M~~ 485 (732)
+++.+.+.. .+..+++--|.+
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhccccccHHHHHHHHHhhhh
Confidence 999988864 355566555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.52 E-value=8.6 Score=44.12 Aligned_cols=292 Identities=10% Similarity=0.010 Sum_probs=170.2
Q ss_pred hhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004743 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (732)
Q Consensus 157 ~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~-tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~ 235 (732)
++.+.+.+...+|.+.+..-+.. .-|-+ .--+--+-+.+.+++++|..+|..+.... ||.+-|+-.+..
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHH
Confidence 33455666666666655543211 11112 22445567788999999999999999764 888888877766
Q ss_pred HHhcccCCcccCCCCChhhHH-HHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC
Q 004743 236 CSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~-~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (732)
+.. +.-+.-++. .+|...+ +.-... .++-...-+. .-...-.+...+++..+.++|
T Consensus 262 ~lg---------k~~d~~~~lk~ly~~ls---~~y~r~-e~p~Rlplsv----------l~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 262 ALG---------KIKDMLEALKALYAILS---EKYPRH-ECPRRLPLSV----------LNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHH---------HHhhhHHHHHHHHHHHh---hcCccc-ccchhccHHH----------hCcchhHHHHHHHHHHHhhcC
Confidence 651 111222333 4443110 111110 1110000111 111223355566777788888
Q ss_pred CC---CCccccc--------hhhhhhccc--cccCCCchhhhccCC-CCChhhhHH-HHHHHHHhccCHHHHHHHHHHHH
Q 004743 315 QF---SNGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDW-SIDNQDADE-IRLSEDAKKYAFQRGFEIYEKMC 379 (732)
Q Consensus 315 i~---Pd~~ty~--------~~~li~~~~--~~a~~~~~~m~~~g~-~pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~M~ 379 (732)
++ +|+.++. ...++..|. ......|...-...+ .|....|.. .++..|-+.|+++.|.+.++.-.
T Consensus 319 ~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 319 VPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred CCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 54 4555554 111111221 111111111111112 445555544 35678889999999999999877
Q ss_pred hCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 380 LDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 380 ~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
.. .|+.+ -|-+=.+.++.+|++++|..++++-.+... ||...-+-......+++++++|.++.......|. +..
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~ 473 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAV 473 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chh
Confidence 54 56543 455556888999999999999999887743 7777666778888899999999999998888775 333
Q ss_pred HHHHHH----------HHHHhcCChHHHHHHHHHHHhc
Q 004743 459 ELEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 459 ty~~Li----------~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-+-+ .+|.+.|++.+|++=|+.+...
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 332222 3456677777777766665443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.9 Score=50.51 Aligned_cols=271 Identities=8% Similarity=-0.011 Sum_probs=156.9
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CC--HHHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IK-LG--QYHYNVLLYL 235 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G--i~-pd--~~tyn~LL~~ 235 (732)
..++.++|...+++..+. .+.. ..+ -...++.+-..+...|++++|...+.+..... .. +. ..++..+-..
T Consensus 464 ~~g~~~~A~~~~~~al~~--~~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 464 NDGDPEEAERLAELALAE--LPLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred hCCCHHHHHHHHHHHHhc--CCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566788888888876442 1111 011 12345566667788999999999999887421 11 11 1233333334
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCC----ccccccccccccccccccccCChhHHHHHHHHHH
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
+. ..|++++|...+... .+.....+..+ ...+..+-.. +...|++++|...+.+..
T Consensus 541 ~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 541 LF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKGL 600 (903)
T ss_pred HH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHhH
Confidence 44 678999998887411 11111112111 1123333333 556799999999888765
Q ss_pred HcCC--CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCCC
Q 004743 312 NLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM 385 (732)
Q Consensus 312 ~~gi--~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p 385 (732)
...- .|.. ....+.. +-..+...|+.++|.+.+++.... +...
T Consensus 601 ~~~~~~~~~~------------------------------~~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 601 EVLSNYQPQQ------------------------------QLQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HhhhccCchH------------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhcccccH
Confidence 4311 0110 0111222 445667789999999998887542 1111
Q ss_pred CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 004743 386 NEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE 456 (732)
Q Consensus 386 d~~ty--~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd 456 (732)
..... ...+..+...|+.+.|..++............ ..+..+-.++...|+.++|..++++.... |..++
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 11010 11234455689999999998775432111111 11344566788889999999999887653 43332
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 457 -EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 457 -~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..++..+-.++.+.|+.++|...|.+..+.
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 234556666778999999999999988765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.3 Score=44.02 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~-~~~g~--~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
.|.. +-..|...|++++|.+.|++..... +-|...+..+-.++ ...|+ .++|.+++++..+..- -+...+..+-
T Consensus 75 ~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA 151 (198)
T PRK10370 75 QWAL-LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLA 151 (198)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444 7778889999999999999888764 34677888888764 67777 5999999999887642 2567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..+.+.|++++|...|+.+.+.. .|+..-+ .+|..
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCccHH-HHHHH
Confidence 88999999999999999998664 4555444 34443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=10 Score=46.88 Aligned_cols=276 Identities=14% Similarity=0.017 Sum_probs=151.6
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~--tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~~ 235 (732)
..++.++|...++.....-...+....|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4456777777777654321111111112211 1112223456789999999999998753111121 122333333
Q ss_pred HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHc
Q 004743 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (732)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (732)
+. ..|++++|...+... .+.....|-. -..+++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 33 678999998888411 0111111111 11223333334 67789999999988876542
Q ss_pred CC---CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CCCC--C
Q 004743 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (732)
Q Consensus 314 gi---~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p--d 386 (732)
.- .++... ....+.. +-..+...|++++|...+++.... ...+ .
T Consensus 561 ~~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLPM----------------------------HEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhccccccH----------------------------HHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 000000 0111222 334456679999999999876542 1112 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--- 457 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty-----~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--- 457 (732)
...+..+...+...|+.++|.+.+.+.....-. .....+ ...+..+...|+.+.|.+++............
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555666788899999999999887543110 111111 11234456689999999998775532211111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+..+-.++...|+.++|..++.+....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11345666778899999999999887653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.11 Score=43.74 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHH
Q 004743 366 YAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~ 443 (732)
|+++.|..+|+++.+.... |+...+-.+..+|.+.|++++|..+++. . ...|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556666666666654321 1233333356666666666666666655 1 111221 111222344555566666666
Q ss_pred HHHH
Q 004743 444 VEEH 447 (732)
Q Consensus 444 l~~~ 447 (732)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.87 E-value=9.1 Score=45.90 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=74.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty--~~lI~~~~ 433 (732)
|-+.|.-.|+++.+..+...+...-..- -...|=-+-++|-..|++++|+..|-+ ..+..||-.++ --|-..|.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~--s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME--SLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH--HHccCCCCccccccchhHHHH
Confidence 5677777788888888877776543111 112345566777778888888887754 33445554333 34667778
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcC----ChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLR-VSVEAG----KGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~-~~~~~g----~~~~A~~l~~~M~~~ 486 (732)
+.|+++.|...|+...+. .||...-..++. .|+..+ ..++|..++.+..+.
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 888888888877777654 354443333333 233332 345566555554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=1 Score=49.22 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=75.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+...|++++|.++|++..+.. +-+...|..+-.+|.+.|++++|...+++..... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34557788999999998888754 3456778888888888999999999988877652 224566777777888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
+|...|++..+. .|+......++
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHH
Confidence 999988888764 46655555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=2.1 Score=41.29 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALL 464 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li 464 (732)
..|..+-..+...|++++|...|++..+..-.+. ...|..+-..+.+.|+.++|...+.+..+. .|+ ...+..+-
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555566666667776666666654432221 245555666666667777777666666543 232 33344444
Q ss_pred HHHHhcCC--------------hHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 004743 465 RVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (732)
Q Consensus 465 ~~~~~~g~--------------~~~A~~l~~~M~~~~~~~~p~t~~~I~~~ 501 (732)
..|...|+ +++|.+++++.... .|+.+..+..|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~ 160 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNW 160 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHH
Confidence 44444444 45566666665543 34444344444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.75 E-value=16 Score=42.08 Aligned_cols=188 Identities=11% Similarity=0.086 Sum_probs=122.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g 436 (732)
-+..-..+.++++|..+|.+-.. ..|.+..|.--+...--.+..++|.+++++..+. .|+.. .|-.+=..+-..+
T Consensus 624 avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 56667778888999999988765 4577777777666666778889999998876654 35543 3333334455556
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH-HHHHHhchHHHHhccc
Q 004743 437 DVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLGKK 513 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~-I~~~~~~~~~~~a~~~ 513 (732)
+++.|.+.|..=.. .-|+ ...|-.|-+.=-+.|.+-+|..+|++-+-+ .|... .|-. |..-.+.|...+|.
T Consensus 700 ~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~-- 773 (913)
T KOG0495|consen 700 NIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAE-- 773 (913)
T ss_pred HHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHH--
Confidence 77777666643221 2244 445666666667788999999999988776 55555 4533 77666766655554
Q ss_pred cchhHHHHHHH---hhcCCCccccccCCCceeEEEEeeecCCCccCcccc
Q 004743 514 KWNESLIKDTM---ENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGE 560 (732)
Q Consensus 514 ~~~~~~v~ea~---~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~ 560 (732)
..+..|+ .++|-+|-+.+|.--.|..-|- +++.--.|..--+
T Consensus 774 ----~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~dph 818 (913)
T KOG0495|consen 774 ----LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHDPH 818 (913)
T ss_pred ----HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCCch
Confidence 3444444 4678889888888777777554 4443345554433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.14 Score=43.01 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 004743 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (732)
.|+++.|..+++++.+..- .|+...+-.+-.+|.+.|+.++|.++++. .. +.|.. ...-.+-.+|.+.|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987743 22444455578899999999999999988 22 22333 33334567788999999999
Q ss_pred HHHHH
Q 004743 478 YLLHK 482 (732)
Q Consensus 478 ~l~~~ 482 (732)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.4 Score=50.40 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=100.6
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
..+.|+.++|..+++...+. .||-... -..+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 66789999999999877664 3444333 2447788999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
..++..... +-+....+.+-.++.+.|+.++|..+|++.... .|+ ..++..+=.++-+.|+.++|...|+...+.-
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999988764 335566777888889999999999999998873 344 6677777788889999999999999887542
Q ss_pred CCCCHHHHHHH
Q 004743 453 VYPEEPELEAL 463 (732)
Q Consensus 453 v~pd~~ty~~L 463 (732)
.|...-|+-+
T Consensus 219 -~~~~~~~~~~ 228 (694)
T PRK15179 219 -GDGARKLTRR 228 (694)
T ss_pred -CcchHHHHHH
Confidence 2344444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.65 E-value=15 Score=41.51 Aligned_cols=123 Identities=9% Similarity=0.056 Sum_probs=90.4
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC----ChhhHHHHHHHHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINP----RLRSYGPALSVFC 433 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~~p----d~~ty~~lI~~~~ 433 (732)
-|.+.+.++.|.+.|.+-.. +.| |...++=+=-..-..+.+.+|...|..-... .+.+ -.-+++.|=++|.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 46678889999999987654 444 5566665555555678899999999876521 1112 2334566667888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+..++|...|+..+... .-|..+|.++--.|...|+++.|.+.|++-...
T Consensus 467 kl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 8999999999999887654 457778888888888999999999999987543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=2 Score=41.46 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~ 434 (732)
+-..|...|++++|...|++.......++ ...|..+...+.+.|++++|...+.+.... .|+ ...+..+-..|..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 55677888999999999999886543332 467888999999999999999999988764 343 4555556666666
Q ss_pred cCC
Q 004743 435 NGD 437 (732)
Q Consensus 435 ~g~ 437 (732)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.6 Score=50.11 Aligned_cols=124 Identities=8% Similarity=-0.082 Sum_probs=100.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~ 435 (732)
|-......|..++|..+++...+. .| +......+...+.+.+++++|....++.... .|+.. ..+.+=.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 667777889999999999998875 45 4567888899999999999999999987765 46654 444555677788
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|+.++|.++|++....+ .-+..++..+=.++-..|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999843 223778888888889999999999999987654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=93.21 E-value=4 Score=42.96 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=66.8
Q ss_pred HHhc-cCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CChh-hHHHH
Q 004743 362 DAKK-YAFQRGFEIYEKMCL----DEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-----PRLR-SYGPA 428 (732)
Q Consensus 362 ~~k~-g~~~~A~~lf~~M~~----~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-----pd~~-ty~~l 428 (732)
|-.. |++++|.+.|++-.+ .| .+. ..++.-+...+.+.|++++|.++|++....-+. .+.. .|-..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 3344 566677766665443 22 111 235667777888899999999999888765332 2232 22334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVSVEAGK---GDRVYYLLHKL 483 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~--gv~pd--~~ty~~Li~~~~~~g~---~~~A~~l~~~M 483 (732)
+-.+...||...|.+.+++.... ++..+ ......||.+| +.|+ +++|..-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHccc
Confidence 44666678898999888887644 22222 33455666664 3444 44444444444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.19 E-value=2.4 Score=49.07 Aligned_cols=214 Identities=12% Similarity=0.108 Sum_probs=148.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
..+-..+.+.|-...|+.+|++.. -|.-+|.+|+ ..|+.++|..+.. ++..+.
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~----------~lg~~~kaeei~~------q~lek~-- 454 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYL----------LLGQHGKAEEINR------QELEKD-- 454 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHH----------HhcccchHHHHHH------HHhcCC--
Confidence 345567778889999999998754 4677788888 6777778888775 344422
Q ss_pred CCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhh
Q 004743 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDA 354 (732)
Q Consensus 275 ~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ty 354 (732)
++..-|..+-+. .-+..-++.|.++++.--.+- .- .+
T Consensus 455 -~d~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r-------------------------------~~ 491 (777)
T KOG1128|consen 455 -PDPRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QR-------------------------------SL 491 (777)
T ss_pred -CcchhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HH-------------------------------hh
Confidence 144447666666 555566677877776443220 00 00
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 004743 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFC 433 (732)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~ 433 (732)
+. ...+.++++++.+.|+.-.+-. +.-..||=.+=.+..+.+++..|.+.|..... ..|| ...||.+=.+|.
T Consensus 492 ~~----~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 492 AL----LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYI 564 (777)
T ss_pred cc----ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHH
Confidence 01 1123578888888887544321 22334565555556678899999999987664 4566 568999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.|+-.+|+..+.+..+.. .-+...|.--+-...+.|.+++|++.+++|...
T Consensus 565 ~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999999887 445556666666779999999999999887654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.3 Score=46.86 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=96.6
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
+..=-..|++..|.++|+.-.+ ..|+...|.+.|+-=.+-..++.|..+++..+-. .|++.+|---...=-++|++
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 3333456889999999998775 4799999999999999999999999999988754 59999998888888889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhccCCCCh
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~----~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
..|..+|+...+. .-|...-..|+-++ .++..+++|..+++--.++ -|+.
T Consensus 224 ~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~ 277 (677)
T KOG1915|consen 224 ALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKG 277 (677)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc
Confidence 9999999887653 12333334444444 4556678888888777665 4444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.9 Score=47.23 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
..+...|++++|.++|++..+.. .-+...|..+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45567899999999999988753 2345677777888999999999999999998764 235667888888999999999
Q ss_pred HHHHHHHHHHhccCCCChhHHHH
Q 004743 475 RVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
+|...|++.... .+.......
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHH
Confidence 999999998876 555444333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.59 Score=43.73 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
...++..+...|++++|..+...+... -+-|...|-.+|.+|...|+...|.++|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555555443 2234445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=3 Score=46.21 Aligned_cols=120 Identities=12% Similarity=0.121 Sum_probs=86.7
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~ 440 (732)
+-..|++++|+..++.+... .+-|..-+....+.+.+.++.++|.+.++.+... .|+ ....-.+=.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34677888888888887654 2445566666677888888888888888887765 455 2333345567888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
|..++++-.... .-|...|..|-.+|...|+..+|..-.-++-.
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 888888776543 56777888888888888888887777666544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.42 Score=38.07 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=23.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.|++++|.++|+.+.... .-+...+-.|..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455555555444332 113333334444555555555555555544444
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.38 Score=50.75 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=98.9
Q ss_pred ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
+|-.+|+. .-+.+.++.|..+|.+-.+.+ ..+| ++...++ +|
T Consensus 3 v~i~~m~~------~~r~~g~~~aR~vF~~a~~~~----~~~~---------------------------~vy~~~A-~~ 44 (280)
T PF05843_consen 3 VWIQYMRF------MRRTEGIEAARKVFKRARKDK----RCTY---------------------------HVYVAYA-LM 44 (280)
T ss_dssp HHHHHHHH------HHHHHHHHHHHHHHHHHHCCC----CS-T---------------------------HHHHHHH-HH
T ss_pred HHHHHHHH------HHHhCChHHHHHHHHHHHcCC----CCCH---------------------------HHHHHHH-HH
Confidence 34455555 666677899999998886432 2222 2222233 44
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcC
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNG 436 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~---~ty~~lI~~~~~~g 436 (732)
. |...++.+.|..+|+...+. +.-+...|..-|+-+.+.++.+.|..+|++.... +.++. ..|...|..=.+.|
T Consensus 45 E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 45 E-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp H-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS
T ss_pred H-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcC
Confidence 3 44456778899999998875 5667888999999999999999999999998765 43333 48999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
+++.+..+.+++.+. .|+......+++
T Consensus 122 dl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 122 DLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp -HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred CHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 999999999998864 455444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.2 Score=38.77 Aligned_cols=95 Identities=19% Similarity=0.133 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-h---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-R---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELE 461 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--~ty~ 461 (732)
..|..++..+ ..++.+.+...++.+.+.. |+. . ..-.+-..+...|++++|...|+......-.|+. ...-
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455556655 4889999999999988762 332 2 2222446788899999999999999987733332 2334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 004743 462 ALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 462 ~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.|-..+...|++++|+..++....
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~ 113 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPD 113 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccC
Confidence 467778899999999999977543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.3 Score=46.43 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCChhhH-HHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVFCN 434 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~-M~~~g~~pd~~ty-~~lI~~~~~ 434 (732)
.|+.--|..-++.|..+|.+.++.+..+ .+..++++|.-||. ++.+-|+++|+- |+.. +|.-.| ..-++.+..
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSH 447 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHH
Confidence 5566666667777888888888777666 77777888877764 566777777764 2333 333222 345666667
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-++-..|..+|+..+..++.||. ..|..+|+-=..-|++..+.++-+++...
T Consensus 448 lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 77777788888888777665553 57888887777788888777777776554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.5 Score=48.61 Aligned_cols=223 Identities=13% Similarity=0.045 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCC
Q 004743 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (732)
Q Consensus 196 ~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~ 275 (732)
-.|.+...+..+..|+.+++.+...... ..-|.-+-.-|+ ..|+++.|.++|. +
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhya----------n~~dfe~ae~lf~-------e------- 790 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYA----------NKGDFEIAEELFT-------E------- 790 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhc----------cchhHHHHHHHHH-------h-------
Confidence 3455666677788888888877765433 233556666666 8899999999994 1
Q ss_pred CCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc---hhhhhhccccccCCCchhhhccCCCCChh
Q 004743 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---NSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~---~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (732)
.--++--|.+ |.++|+|++|.++-.+- .|-....+.|- ...--+|...+|+.++-.+. .||.
T Consensus 791 --~~~~~dai~m------y~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~- 855 (1636)
T KOG3616|consen 791 --ADLFKDAIDM------YGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK- 855 (1636)
T ss_pred --cchhHHHHHH------HhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-
Confidence 1124555777 99999999999886544 33333333442 00001111233333332221 1332
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|..|-+.|..++.+++.++-.-.- -..|---+-.-|-..|++..|+.-|-+-. -|-+.+++|
T Consensus 856 -----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmy 918 (1636)
T KOG3616|consen 856 -----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMY 918 (1636)
T ss_pred -----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHh
Confidence 6777888888777777776532111 11344455566677888888877764322 256777788
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
-.++.+++|.++-.. .|- .|..-- +.-.+++.=--+.|.+++++
T Consensus 919 k~s~lw~dayriakt---egg-~n~~k~--v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKT---EGG-ANAEKH--VAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred hhhhhHHHHHHHHhc---ccc-ccHHHH--HHHHHHHhhCcHHHHHHHHh
Confidence 888888888776543 221 122222 22223444344667777765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.68 E-value=23 Score=40.81 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
..|++|-+-|.+.|+++.|..+|++....- .++.-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 689999999999999999999999987653 356678888888883
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.1 Score=41.18 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=31.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
+...+...|++++|...|++.......| ...+|..+-..+...|+.++|.+.++....
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445566666666666654432111 123555555666666666666666655543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.45 Score=44.57 Aligned_cols=66 Identities=15% Similarity=0.266 Sum_probs=51.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS 424 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t 424 (732)
++..+...|++++|.++.+.+.... +-|+..|-.+|.+|...|+..+|.+.|+.+.. .|+.|+..+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 6778888999999999999998864 56899999999999999999999999998854 388888654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.67 Score=47.64 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=67.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----------------~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+.++-...-++.|++.|+.-|..+|+.||+.+=+.. +-+-+.+++++|...|+.||..+-..||
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 567777788899999999999999999999765432 2245889999999999999999999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHH
Q 004743 430 SVFCNNGDV-DKACSVEEHML 449 (732)
Q Consensus 430 ~~~~~~g~~-~~A~~l~~~M~ 449 (732)
++|.+.+.. .+.+++.--|.
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999998853 44445544454
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=5.6 Score=41.41 Aligned_cols=270 Identities=11% Similarity=0.018 Sum_probs=146.8
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHh
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV--LLYLCSS 238 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~--LL~~~~~ 238 (732)
.+..+..+|.+++..--++.. .+....+.|=.+|-...++..|-..|+++-.. -|...-|.. --+.|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p-------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY-- 89 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP-------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY-- 89 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH--
Confidence 355677788877776533321 13366777778888888888888888887643 343333321 11111
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
+.+...+|+.+.. .|.+...+. -.+-.-+-| .-+.+++-.+..+.++....|-
T Consensus 90 ---------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAI--------kYse~Dl~g~rsLveQlp~en~-- 143 (459)
T KOG4340|consen 90 ---------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAI--------KYSEGDLPGSRSLVEQLPSENE-- 143 (459)
T ss_pred ---------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHH--------hcccccCcchHHHHHhccCCCc--
Confidence 3445667777664 121110000 000011111 1234445555555544432210
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRM 396 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-~gi~pd~~ty~~LI~~ 396 (732)
..+.++ .-....+.|+.+.|.+-|+...+ .|..| ...||.-+ +
T Consensus 144 ---------------------------------Ad~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-a 187 (459)
T KOG4340|consen 144 ---------------------------------ADGQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-A 187 (459)
T ss_pred ---------------------------------cchhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-H
Confidence 001111 11223578999999999988776 46655 56788666 4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-------------CChhh--------HHHHHHH-------HHhcCChHHHHHHHHHH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSV-------FCNNGDVDKACSVEEHM 448 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~-------------pd~~t--------y~~lI~~-------~~~~g~~~~A~~l~~~M 448 (732)
..+.|+.+.|++...++.+.|++ ||+++ -+.++.+ +.+.|+.+.|.+-+-+|
T Consensus 188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 45678899999999999888754 33322 2234433 34568889999988888
Q ss_pred HHC-CCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHhccCCCChhHH-HHHHHHHhchHH
Q 004743 449 LEH-GVYPEEPELEA--LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNSKEA 507 (732)
Q Consensus 449 ~~~-gv~pd~~ty~~--Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~-~~I~~~~~~~~~ 507 (732)
.-+ .-..|.+|..- |.++=.+-+.--+-+.++-++ . .++++|+ +++.-+|++.-.
T Consensus 268 PPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~--n--PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQ--N--PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred CCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhc--C--CCChHHHHHHHHHHhhhHHH
Confidence 532 33456666653 333323233322223333222 2 4555565 557777877554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.39 E-value=8.7 Score=43.66 Aligned_cols=218 Identities=11% Similarity=0.131 Sum_probs=121.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|.+.-+.+...+ ||..+-- -.=+-+..+.+++++|+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~--pdd~~a~--------------------------------~cKvValIq~~ky~~ALk 67 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV--PDDEDAI--------------------------------RCKVVALIQLDKYEDALK 67 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC--CCcHhhH--------------------------------hhhHhhhhhhhHHHHHHH
Confidence 778899999999888887665 5543321 012234556778888886
Q ss_pred HHHHHHhCCCCCCHHHHHH--HHHHHH--hcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTA--VGRMAM--SMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~--LI~~~~--~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
+.+.=. -.-+++. +=++|| +.+..|+|...++ |+.++.. +-..=-..+-+.|++++|+.+|+++
T Consensus 68 ~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 68 LIKKNG------ALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred HHHhcc------hhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554321 1123333 356777 5889999999887 4444443 3333345577889999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCChhHHHH-HHHHHh---chHHHHhccccchhHHHHHH
Q 004743 449 LEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFN---SKEAARLGKKKWNESLIKDT 523 (732)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~l~~~M~~~~~~~~p~t~~~-I~~~~~---~~~~~~a~~~~~~~~~v~ea 523 (732)
.+++.. .|...+.+-+-. +-.-.+- +++.... ++.++|.. ....|. .++..+|. +.+..+
T Consensus 137 ~kn~~d----d~d~~~r~nl~a~~a~l~~~-~~q~v~~----v~e~syel~yN~Ac~~i~~gky~qA~------elL~kA 201 (652)
T KOG2376|consen 137 AKNNSD----DQDEERRANLLAVAAALQVQ-LLQSVPE----VPEDSYELLYNTACILIENGKYNQAI------ELLEKA 201 (652)
T ss_pred HhcCCc----hHHHHHHHHHHHHHHhhhHH-HHHhccC----CCcchHHHHHHHHHHHHhcccHHHHH------HHHHHH
Confidence 876532 233333222111 1111111 2222211 22336655 333333 33333332 344444
Q ss_pred HhhcCCCccccccCCCceeEEEEeeecCCCccCccccccccccCCHHHHHHHHHHHH---HHH--HhhccchhHHHHHHH
Q 004743 524 MENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVA---SIA--IKRERNSSFQKFQKW 598 (732)
Q Consensus 524 ~~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~---~~a--~~~~~~~~~~~F~~~ 598 (732)
+. .|...|..-+-.+||.+.=.+.|. .++ +.|.+.++.+.+...
T Consensus 202 ~~-------------------------------~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 202 LR-------------------------------ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HH-------------------------------HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33 355666555555666665555552 333 347777888888887
Q ss_pred Hhhc
Q 004743 599 LDYY 602 (732)
Q Consensus 599 l~~~ 602 (732)
+...
T Consensus 251 i~~~ 254 (652)
T KOG2376|consen 251 IKRN 254 (652)
T ss_pred HHhc
Confidence 7764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.60 E-value=1.8 Score=46.51 Aligned_cols=110 Identities=9% Similarity=-0.013 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
+.+. .|.-+...|+...|.++..+.+ .||..-|-..|++|+..++|++-.++-.. .- ..+-|-+.+.+|
T Consensus 179 Sl~~-Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLND-TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEAC 247 (319)
T ss_pred CHHH-HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHH
Confidence 3344 5566677888888888876664 47888899999999999999887775432 22 348899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
.+.|+..+|..+...+ ++..-+..|.+.|++.+|.+.--+.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999988887762 2366677888899988887764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.52 E-value=4.2 Score=44.60 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALS 430 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty-~~lI~ 430 (732)
.|-. .|+.--+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|.++|+-=... -||.-.| +--+.
T Consensus 399 v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred HHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3444 6677777778899999999999998 67999999999998875 6778899999752222 3565444 34666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
.+.+-++-+.|..+|+.-.++ +.-+ ...|..||+-=...|++..|..+=++|... .|..++..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 778889999999999954432 1222 468999999999999999999999999988 777776665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.52 E-value=10 Score=34.97 Aligned_cols=121 Identities=9% Similarity=-0.012 Sum_probs=86.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+|..+.+.+.......+++.+...+ ..+...+|.+|..|++... .+..+.+.. .++.+...-++..|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 8888888899999999999999887 4788899999999998743 344444442 2455556668888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~l~~~M~~~~~~~~p~t~~~I~~~ 501 (732)
++++..++..+.. |...+..+... ++.+.|.+++.+- -.|+.|..+..+
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 9999999887642 23334444444 7888888887752 245666554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.40 E-value=3 Score=48.81 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=35.6
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQ 218 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~ 218 (732)
.|+.+.|++-..-+ +.. ..|..|-..|.+..+++-|.-.+..|.
T Consensus 741 iG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred eccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 46677777776666 223 899999999999999999998888887
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=91.34 E-value=3.4 Score=39.63 Aligned_cols=96 Identities=19% Similarity=0.104 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
-...|..+...+...|++++|...|++.....-.| ...+|..+=..|...|+.++|...++...... .....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34567777888888999999999999887653222 23477778888999999999999999988652 2234455666
Q ss_pred HHHHH-------hcCChHHHHHHHHH
Q 004743 464 LRVSV-------EAGKGDRVYYLLHK 482 (732)
Q Consensus 464 i~~~~-------~~g~~~~A~~l~~~ 482 (732)
...+. +.|+.++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 67777766555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=91.18 E-value=6 Score=35.97 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=66.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------hhhHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR------LRSYGPALSV 431 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd------~~ty~~lI~~ 431 (732)
..+-..|+.++|..+|++-...|.... ...+-.+-..+-..|++++|..+|++..... |+ ...+ +--+
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f--~Al~ 84 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVF--LALA 84 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHH--HHHH
Confidence 445567888888888888888776654 2345556667778888888888888776541 33 2222 2225
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004743 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (732)
+...|+.++|.+.+-.... ++...|.--|..|+.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 6677888888887765542 444466666666653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.60 E-value=8.9 Score=43.15 Aligned_cols=133 Identities=10% Similarity=0.006 Sum_probs=100.9
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHH
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (732)
...+|-.+|+. .-+..-+..|..+|.+..+.+..+- ++..+++
T Consensus 365 ~tLv~~~~mn~------irR~eGlkaaR~iF~kaR~~~r~~h-------------------------------hVfVa~A 407 (656)
T KOG1914|consen 365 LTLVYCQYMNF------IRRAEGLKAARKIFKKAREDKRTRH-------------------------------HVFVAAA 407 (656)
T ss_pred CceehhHHHHH------HHHhhhHHHHHHHHHHHhhccCCcc-------------------------------hhhHHHH
Confidence 66667777777 6677777888888887777765551 3334445
Q ss_pred HHHHHHHhccCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHH
Q 004743 357 IRLSEDAKKYAFQRGFEIYEK-MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFC 433 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~-M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~ 433 (732)
+|..||. ++.+-|.++|+- |+..| -+..--...++-+...++-..|..+|+.....++.|| ...|..+|..=.
T Consensus 408 -~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 408 -LMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred -HHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 8887775 556889999985 44433 2234446778888899999999999999998877776 589999999999
Q ss_pred hcCChHHHHHHHHHHHH
Q 004743 434 NNGDVDKACSVEEHMLE 450 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (732)
.-|++..+.++-+++..
T Consensus 484 ~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFT 500 (656)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999888764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.51 E-value=2.3 Score=43.44 Aligned_cols=98 Identities=10% Similarity=-0.042 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
...+..+....+.|++..|+..|.+...- -++|..+|+-+=.+|- +.|+.+.|..-+. ...+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaald----------q~Gr~~~Ar~ay~-------qAl~ 162 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALD----------QLGRFDEARRAYR-------QALE 162 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHH----------HccChhHHHHHHH-------HHHH
Confidence 45666888888889999999998888753 4677888888877777 7788888877773 1111
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (732)
- -..+...+|.|--. +.-.|+.+.|..++..-...+
T Consensus 163 L-~~~~p~~~nNlgms------~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 163 L-APNEPSIANNLGMS------LLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred h-ccCCchhhhhHHHH------HHHcCCHHHHHHHHHHHHhCC
Confidence 1 00122233333333 445556667766666555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.41 E-value=6.4 Score=44.96 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-----------
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP----------- 458 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~----------- 458 (732)
.-.+..-+-+...+..|-++|..|-.. .++++.....+++.+|+.+-+...+- .||++
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhh
Confidence 333333344455566677777766543 35666777777787777777665432 33332
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-|.--=.+|-++|+..+|..+++++..+
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2334446777888888888888888666
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=90.31 E-value=29 Score=37.31 Aligned_cols=223 Identities=11% Similarity=0.003 Sum_probs=129.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCC-ChhhHHHHhhhccccchhhcccCCC
Q 004743 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDM 275 (732)
Q Consensus 198 I~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~~~~~~~~~~~~~~k~g-~~~~A~~~~~~~~~~s~em~~~~g~ 275 (732)
-..+...++.++|+.+++.+... .|+.. .|+.-=..+. +.| .++++++.++ ++... ..
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-np 103 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-NP 103 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-CC
Confidence 33345667888999999988864 34332 3332222233 334 4567777774 33322 22
Q ss_pred CCccccccccccccccccccccCC--hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhh
Q 004743 276 DNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (732)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~--~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (732)
.+...|+.--.. +.+.|. .+++..+++.|.+.. .. |...
T Consensus 104 knyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----pk-----------------------------Ny~A 144 (320)
T PLN02789 104 KNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----AK-----------------------------NYHA 144 (320)
T ss_pred cchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----cc-----------------------------cHHH
Confidence 233345433222 222232 255666666665542 11 2233
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHcCCCCChhhHH
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---g~~----~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
|+. .--.+.+.|.+++|++.++++.+.+. -|...|+-.--.+.+. |.. +++.+....+... .+-|...|+
T Consensus 145 W~~-R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~ 221 (320)
T PLN02789 145 WSH-RQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWR 221 (320)
T ss_pred HHH-HHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHH
Confidence 444 44555566889999999999998763 3556676665555544 222 4566666555544 233567888
Q ss_pred HHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------------ChHHHHHHHHHH
Q 004743 427 PALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG------------------KGDRVYYLLHKL 483 (732)
Q Consensus 427 ~lI~~~~~~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g------------------~~~~A~~l~~~M 483 (732)
-+-..+... +...+|.+++.+....+ ..+......|++.|+... ..++|..++..+
T Consensus 222 Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 222 YLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 877777773 34456888888876543 345677888999998643 235677777776
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=7.4 Score=40.59 Aligned_cols=100 Identities=10% Similarity=0.038 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPE 459 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~t 459 (732)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+.++|...|+.+.+.- |+ ...
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 44555555555667777777777777654 2332 234445566777788888888887776531 22 222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+-.+...+...|+.++|..+|+++.+. .|...
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 333444566778888888888888776 55544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=14 Score=37.94 Aligned_cols=158 Identities=8% Similarity=0.005 Sum_probs=92.8
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++.... -|+..... +. . -.+..+|-+.+++++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~--------------------------~a--~-l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGPYSQ--------------------------QV--Q-LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHH--------------------------HH--H-HHHHHHHHhcCCHHHHHH
Confidence 55689999999999998874 34331110 00 0 115678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh--c---------------CC---HHHHHHHHHHHHHcCCCCCh------hhHH-
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSLGINPRL------RSYG- 426 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~pd~------~ty~- 426 (732)
.|++..+.-..-..+-|.-.+.|.+. . .+ ..+|++.|+++.+. -|+. ...-
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV 168 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999876433334466666666552 1 12 23555666666554 2332 1111
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 427 -----------~lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+-.-|.+.|....|..-++.+.+. +........-.|+.+|.+.|..++|......+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1333456666666666666666654 333334445566666666666666666555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.83 E-value=8.5 Score=40.87 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=99.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhc----cCHHHHHHH
Q 004743 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK----YAFQRGFEI 374 (732)
Q Consensus 299 ~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~----g~~~~A~~l 374 (732)
.+++...+++.|.+.|+.-+..+|- . +.+|...+.. ..+.+|.++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~l-----a--------------------------A~~i~~~~~~~~~~~~~~ra~~i 125 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYL-----A--------------------------ALIILEEEEKEDYDEIIQRAKEI 125 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHH-----H--------------------------HHHHHHhcccccHHHHHHHHHHH
Confidence 3577788999999999988887763 1 1122222111 246789999
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCC---hHHHHH
Q 004743 375 YEKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD---VDKACS 443 (732)
Q Consensus 375 f~~M~~~gi---~pd~~ty~~LI~~~~~~g~~----~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~---~~~A~~ 443 (732)
|+.|++.-. .++-.++.+|+.. ...++ +.++.+++.+...|+..+- .-+-+-|-+++.... +.++.+
T Consensus 126 y~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~ 203 (297)
T PF13170_consen 126 YKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIE 203 (297)
T ss_pred HHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHH
Confidence 999998632 3677888888776 33343 4678888888888876653 344444555555432 446889
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhc
Q 004743 444 VEEHMLEHGVYPEEPELEALLRVSVEAGK-----GDRVYYLLHKLRTS 486 (732)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~-----~~~A~~l~~~M~~~ 486 (732)
+++.+.+.|+++....|..+ ..++-.+. .+...++.+.+.+.
T Consensus 204 l~~~l~~~~~kik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~~ 250 (297)
T PF13170_consen 204 LYNALKKNGVKIKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKEQ 250 (297)
T ss_pred HHHHHHHcCCccccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhhC
Confidence 99999999999888877644 33333332 33444555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.82 E-value=16 Score=43.65 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=67.5
Q ss_pred chhhhccccccccCcCCcccCccccccchhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHH
Q 004743 120 NFAFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELD 199 (732)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~ 199 (732)
+++...++....++....+.-++.++.....+-.++. +.+.|+.++|..+++..... +++ |..|..++-.
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs---l~r~gk~~ea~~~Le~~~~~--~~~-----D~~tLq~l~~ 85 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS---LFRLGKGDEALKLLEALYGL--KGT-----DDLTLQFLQN 85 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH---HHHhcCchhHHHHHhhhccC--CCC-----chHHHHHHHH
Confidence 3444444433333333333333334444443333333 45778888999888887332 222 5589999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004743 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (732)
.|-..+..++|..+|++.... -|+..-...+..+|+
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayv 121 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYV 121 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHH
Confidence 999999999999999988743 577777777777777
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.61 E-value=18 Score=38.92 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..+.+.-|.-+...|+...|.++-++. ++ ||.+-|-.-|.+|+..+++++-.++... +-..+-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 346666788888899999999887654 34 8999999999999999999887776442 2234779999999
Q ss_pred HHhcCChHHHHHHHHHH
Q 004743 467 SVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M 483 (732)
|.+.|...+|..+..++
T Consensus 247 ~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHCCCHHHHHHHHHhC
Confidence 99999999999998874
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.43 E-value=7.4 Score=46.22 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=100.7
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM--SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~--~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
...+++..|.....++.++- ||. .|..+++++. +.|+.++|..+++.....+.. |..|...+-..|-..|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 35678889999888877652 443 5666666665 799999999999988776655 89999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHhc
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNS 504 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~--t~~~I~~~~~~ 504 (732)
|..+|++.... .|+..-...+..+|.+.+.+.+-.+.=-+|-+. .|... .|.+|.=.+.+
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHh
Confidence 99999998754 688888889999999998877544444444443 34433 56665544444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.5 Score=34.58 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+.+.|++++|.+.|+...+.. | +...+..+-.++.+.|++++|..+|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666655443 3 333444445555556666666666655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=89.00 E-value=44 Score=38.68 Aligned_cols=269 Identities=10% Similarity=-0.021 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G-i~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
..|....-++--.|+...|..+.++..+.- -.|+...|.-....+-+.. .-.+.|....|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~----i~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ----ILIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH----HHHHcccHHHHHHHHH--------hh
Confidence 678888888888999999999999998665 3577777765544432210 0115666777777663 11
Q ss_pred ccCCCCCcccc-ccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc------hh-------hhhhccc----
Q 004743 271 DSRDMDNNGQL-DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRS---- 332 (732)
Q Consensus 271 ~~~g~~d~~ty-n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~------~~-------~li~~~~---- 332 (732)
+. .+.|.+.| -+--. .+.+.+++++|..++..+..+. ||-+-|. .+ .+...|.
T Consensus 212 e~-~i~Dkla~~e~ka~------l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 212 EK-QIVDKLAFEETKAD------LLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hh-HHHHHHHHhhhHHH------HHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 11111111 11111 1667788888888888888773 7877776 11 0001111
Q ss_pred ----------------------cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHH----hCC----
Q 004743 333 ----------------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC----LDE---- 382 (732)
Q Consensus 333 ----------------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~----~~g---- 382 (732)
......+..+.++|+.+--. . +.+.|-.....+--.++.-++. ..|
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---d-l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---D-LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---h-hHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 11112444555666554221 2 3333322222221122222222 111
Q ss_pred ------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004743 383 ------VPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (732)
Q Consensus 383 ------i~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (732)
-+|....|+ -++..|-+.|+++.|...++.-.. -.|+.+ -|-.=-..++.+|++++|..++++..+-.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 145655554 456667789999999999987554 356643 44444467888999999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~ 488 (732)
.||...-.--..-..++.+.++|.++.....+.+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 45554443444455678899999999988877743
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.72 E-value=26 Score=38.15 Aligned_cols=248 Identities=16% Similarity=0.107 Sum_probs=140.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCC--cc
Q 004743 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL-CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NG 279 (732)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~-~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d--~~ 279 (732)
-.|+.+.|.+-|+.|... +.|--.=|.+ |..+. +.|.-+-|.+.-. +.- +.-+ ..
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAq-------r~GareaAr~yAe-------~Aa---~~Ap~l~W 189 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQ-------RLGAREAARHYAE-------RAA---EKAPQLPW 189 (531)
T ss_pred hcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHH-------hcccHHHHHHHHH-------HHH---hhccCCch
Confidence 469999999999999852 3333332333 33333 5666666665542 111 1112 23
Q ss_pred ccccccccccccccccccCChhHHHHHHHHHHHcC-CCCCccccchhhhhhccc------cccCCCchhhhccCCCCChh
Q 004743 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRS------NLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-i~Pd~~ty~~~~li~~~~------~~a~~~~~~m~~~g~~pd~~ 352 (732)
.+.+++.. .|..|+|+.|+++.+.-++.. +.||+.--....|+.+.. +.+...-.......+.||.+
T Consensus 190 A~~AtLe~------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 190 AARATLEA------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLV 263 (531)
T ss_pred HHHHHHHH------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccc
Confidence 36677888 999999999999999877654 455554333222222221 11111112222334455554
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-hhhHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-LRSYGPALS 430 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd-~~ty~~lI~ 430 (732)
--..+--..+.+.|++.++-.+++.+-+..--|+.. ++..+++.|+ .+.+=++..++. .++|| ..+--.+..
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 433334467788888888888888888776555532 2222334443 344333333322 24454 344455666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~l~~~M~~~ 486 (732)
+-...|++..|..--+.... ..|....|-.|-+.- +..|+-.++...+-+-.+.
T Consensus 338 aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66777887776654443332 357777777766655 3447877777776665444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.65 E-value=54 Score=38.10 Aligned_cols=125 Identities=10% Similarity=-0.003 Sum_probs=89.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
.+..--..|..+.-..+|++.... ++-.++.|-...+-+-..|++..|..++.+..+..- -+...|-..+..-..+.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e 633 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDE 633 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhcccc
Confidence 333333456777777788877764 455667777777777778888888888887766532 256677788888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++.|..+|..... ..|+...|.--+...--.+..++|.+++++-.+.
T Consensus 634 ~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 634 LERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 8888888877665 4577777776666666678888888888776665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.16 E-value=3.2 Score=33.33 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
..|.+.+++++|.++++.+.... ..+...|...-..+.+.|++++|...|+...+. .|.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 34666677777777777776553 223344444555566777777777777776665 44443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.8 Score=34.09 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
.+.+.|++++|.+.|++..+.. +-+...+..+-.++...|++++|...|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666666666666554 22445555666666666666666666666543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.75 E-value=13 Score=38.19 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=98.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-----H
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~-----~ 432 (732)
++...--.|.+.-...++.+..+..-+-+.+..+.|.+.-.+.|+.+.|...|+...+..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 44444445667777888888888877778899999999999999999999999988877556677777766542 4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHH
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~ 496 (732)
.-+.+...|...|.++.... .-|...-| +|+..| .|+..+|.+.+..|... .|.|.+-+
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 44578888998898887654 12222222 444444 58899999999999887 66666433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.56 E-value=44 Score=40.70 Aligned_cols=109 Identities=9% Similarity=0.044 Sum_probs=49.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-.+-.+.|.+.+|.+-|-+- -|...|.-+|+...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++
T Consensus 1110 lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 444444445555554443321 134455555555555555555555554444443434332 345555555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
+.+-+++.. -||......+=+-|...|.++.|.-++.
T Consensus 1182 l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1182 LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 544333321 2444444444444444444444444333
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.38 E-value=11 Score=39.98 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC---Ccccccc
Q 004743 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (732)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~---d~~tyn~ 283 (732)
+++.+.+++.|++.|++-+.++|-+.+-...... .....-...+|..++ +.|+++..+- +.+++.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 5667889999999999998888776444443210 000112245677777 4677664443 6666777
Q ss_pred cccc
Q 004743 284 GSSP 287 (732)
Q Consensus 284 LI~~ 287 (732)
|+..
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 7666
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=7.1 Score=47.43 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=102.2
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|..||.. +...+++++|.++.++-.+ ..|+...+ .++.|.......-.+++.. . . +++
T Consensus 34 ~~~Li~~------~~~~~~~deai~i~~~~l~--~~P~~i~~---yy~~G~l~~q~~~~~~~~l---------v-~-~l~ 91 (906)
T PRK14720 34 LDDLIDA------YKSENLTDEAKDICEEHLK--EHKKSISA---LYISGILSLSRRPLNDSNL---------L-N-LID 91 (906)
T ss_pred HHHHHHH------HHhcCCHHHHHHHHHHHHH--hCCcceeh---HHHHHHHHHhhcchhhhhh---------h-h-hhh
Confidence 6777888 8899999999999984444 46888777 4555553221111222211 1 2 555
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
......++.-...+...|...+ -+...+-.|..+|-+.|+.++|..+++++.+.. .-|...-|-+=..|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 5666666655666666666643 345688889999999999999999999999886 34567777777778888 9999
Q ss_pred HHHHHHHHHHC
Q 004743 441 ACSVEEHMLEH 451 (732)
Q Consensus 441 A~~l~~~M~~~ 451 (732)
|.+++......
T Consensus 168 A~~m~~KAV~~ 178 (906)
T PRK14720 168 AITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHH
Confidence 99888776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.77 E-value=54 Score=36.03 Aligned_cols=253 Identities=10% Similarity=-0.000 Sum_probs=123.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc
Q 004743 200 MCSKRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~ 278 (732)
+.|-.++-..|..++-..... -++-|++....+-+.+. ..|+.++|+..|.. ..|.+-..+..-
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~dpy~i~~M 269 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCANPDNVEAM 269 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCChhhhhhH
Confidence 334456666666666666543 45667788888888888 88999999999951 011111001100
Q ss_pred cccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhh-hhhccccccCCCchh---hhccCCCCChhhh
Q 004743 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQ-LLDGRSNLERGPDDQ---SRKKDWSIDNQDA 354 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~-li~~~~~~a~~~~~~---m~~~g~~pd~~ty 354 (732)
-.|..| +.+.|+++....+...+.... -|+... ..++....-++-+.. ...+.+..|....
T Consensus 270 D~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 270 DLYAVL---------LGQEGGCEQDSALMDYLFAKV------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred HHHHHH---------HHhccCHhhHHHHHHHHHhhh------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 114444 556677777666666554321 010000 000110000000000 0011111222222
Q ss_pred HHHHH--HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--HH
Q 004743 355 DEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LS 430 (732)
Q Consensus 355 n~~lI--~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l--I~ 430 (732)
-..++ ..+...++.++|.=-|..-..-. +-+...|--|+.+|...|.+.+|.-+-++..+. +.-+..+.+.+ .-
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 23222 33445567777777776654321 235677888888888888888776655543322 11222222211 00
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-...--++|..+++.-.. +.|+- ...+.+-..+...|..+++..+++.-...
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred eccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 11111223556665554332 23442 23445555566677777777777766554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=9.9 Score=36.18 Aligned_cols=87 Identities=9% Similarity=-0.046 Sum_probs=41.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~-~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (732)
+...|++++|..+|+-.... .|....|--=+.+++ ..|++++|...|........ -|...+-.+=.++...|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 34555555555555554432 233333322222222 23555555555555554442 233344444445555556665
Q ss_pred HHHHHHHHHhc
Q 004743 476 VYYLLHKLRTS 486 (732)
Q Consensus 476 A~~l~~~M~~~ 486 (732)
|.+-|+.-...
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
|
| >PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.6 Score=37.62 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=53.5
Q ss_pred CCCccEEEeccc---cccCCCCCChhhHHHHHHHHHcCceeeCCCCCCchHH--HHHHHHhCCcEEEeCcccccccc
Q 004743 640 SKKWPLIVLHNR---RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDWY--WLYAAIKFKCLLVTNDEMRDHTF 711 (732)
Q Consensus 640 ~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD~~--~lyaa~~~~~~~vsnD~~RdH~~ 711 (732)
+|++++|+|+.= .+..+.....++...++++.+.+.+-+......-+|+ .+..|-+.+++||||.++|--.+
T Consensus 22 rGHKT~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~~~~~~eV~~~Aek~~GI~VSs~E~~~~~~ 98 (122)
T PF14626_consen 22 RGHKTVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNRKKWFNEVLDEAEKTHGIFVSSSEYRRRNF 98 (122)
T ss_pred ccCeeEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccHHHHHHHHHHHHHHcCcEEECCHHHhcccc
Confidence 699999999854 3333334477889999999999998777666555554 34555568999999999875554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=85.91 E-value=2.4 Score=34.72 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCC-hhhHHHHHHHHHhcCChHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g-~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (732)
+|+.+-..|...|++++|...|++.... | -.|+ ..+|+.+=..|...|+.++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555555555555555555544322 1 0111 23444444444445555555554444
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.68 E-value=74 Score=36.55 Aligned_cols=136 Identities=13% Similarity=0.200 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~--------~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
....|.+++...-+..-.-..++--+++......|+++.|.+++. .+.+.+..|-++.+ ++..+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCC
Confidence 466777777776654322234566667777888999999999999 66677777776654 55667777777
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHhccCCCCh-hH-HHHHHHHHhchH
Q 004743 439 DKACSVEEHMLEH--GVYPEEPELEALLR----VSVEAGKGDRVYYLLHKLRTSVRKVSP-ST-ADVIAKWFNSKE 506 (732)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~Li~----~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t-~~~I~~~~~~~~ 506 (732)
+.|-.++.+.... .-.+.......++. .=.+.|..++|..+++++.+. .+.. ++ ...+.+++.-..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhcCH
Confidence 7788888766432 11222233333333 335789999999999999885 2222 23 344777766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=84.99 E-value=18 Score=32.91 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHH-HHHHHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---EPEL-EALLRVS 467 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd---~~ty-~~Li~~~ 467 (732)
-.++-..|+.++|..++++-...|+... ...+--+=..|-..|+.++|..++++..... |+ .... ..+--++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3456678999999999999999887765 3455556677888899999999999887652 44 1111 1222356
Q ss_pred HhcCChHHHHHHHHHHH
Q 004743 468 VEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~ 484 (732)
...|+.++|...+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78899999998886543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=12 Score=38.97 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhh
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRS 424 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t 424 (732)
.|.. .+..+.+.|++++|...|+.+...- |+. ..+-.+-..|...|++++|...|+.+.+. .|+ ...
T Consensus 145 ~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dA 219 (263)
T PRK10803 145 DYNA-AIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADA 219 (263)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHH
Confidence 3444 5555567799999999999999763 332 45667888899999999999999999865 132 222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
+--+...+...|+.++|..+|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445667889999999999988765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=25 Score=33.53 Aligned_cols=91 Identities=9% Similarity=0.016 Sum_probs=72.0
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
-.-+...|++++|..+|+-+..-. +-+..-|-.|=-+|-..|++++|.+.+........ -|.+.|-.+=.++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 345678899999999999988754 23445566666677789999999999999887753 4566777777889999999
Q ss_pred HHHHHHHHHHHHC
Q 004743 439 DKACSVEEHMLEH 451 (732)
Q Consensus 439 ~~A~~l~~~M~~~ 451 (732)
+.|.+-|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.89 E-value=66 Score=36.71 Aligned_cols=220 Identities=13% Similarity=0.103 Sum_probs=116.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~--Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
..++|-++=--|--.|+..+|.+.|.....- -+.| .|-..=+.|+ -.|.-|.|...+..- +
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---aWl~fghsfa----------~e~EhdQAmaaY~tA---a- 373 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---AWLAFGHSFA----------GEGEHDQAMAAYFTA---A- 373 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---HHHHHhHHhh----------hcchHHHHHHHHHHH---H-
Confidence 3478887777777779999999999876532 2223 3333334444 445555555554210 0
Q ss_pred hhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccC
Q 004743 268 ELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKD 346 (732)
Q Consensus 268 em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g 346 (732)
.++. |+.-..-|-. .+|.+.+.+..|.++|.+-. ++.|+. ..++
T Consensus 374 rl~~--G~hlP~LYlg--------mey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~----------------------- 418 (611)
T KOG1173|consen 374 RLMP--GCHLPSLYLG--------MEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLH----------------------- 418 (611)
T ss_pred Hhcc--CCcchHHHHH--------HHHHHhccHHHHHHHHHHHH--hcCCCcchhhh-----------------------
Confidence 1111 3321111211 12666777888888886544 344543 3332
Q ss_pred CCCChhhhHHHHHHHHHhcc-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 347 WSIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g-~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
...++.|+. ..|.++- -+..|++..+......+ -=.-+++.|=.+|-+.+..++|...++.-... .+-|..+|
T Consensus 419 -Elgvvay~~---~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~ 492 (611)
T KOG1173|consen 419 -ELGVVAYTY---EEYPEALKYFQKALEVIKSVLNEKI-FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTH 492 (611)
T ss_pred -hhhheeehH---hhhHHHHHHHHHHHHHhhhcccccc-chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHH
Confidence 001111111 1111111 12233322222222211 12345666666777777777777777765544 34466667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (732)
.++=-.|...|+++.|.+.|.+-. .+.||..+-..|+..+..
T Consensus 493 asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 776666777777777777776654 356777666666665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=82.34 E-value=6.8 Score=31.00 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
+|..+-..+...|++++|...|++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333444444444444444444433
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.80 E-value=67 Score=33.10 Aligned_cols=130 Identities=8% Similarity=0.019 Sum_probs=92.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~-~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
+.=+....|+.+.|...++.+..+- |...=.-.|=. -+-..|+.++|.++++.+.+.. +-|.++|--=|...-..|
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3334456788889999999988763 33221111111 1335788999999999988775 556777776666666677
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+--+|.+-+.+-.+. +.-|...|.-|-..|...|++++|.-.+++|.-. .|...
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~ 188 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNP 188 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcH
Confidence 777777766665544 4678999999999999999999999999999765 44433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=81.46 E-value=66 Score=34.58 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=92.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
+-..+...++.++|+.+.++..+.. +-+..+|+.--..+.+.| ++++++..++++.+..- -+..+|+.---.+-+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcC
Confidence 4556677889999999999988753 223345555545556666 57999999999887632 23345664433344555
Q ss_pred C--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 437 D--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 437 ~--~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
+ .+++.++++.|.+.. .-|...|+..--++...|+++++++.++++.+. .+...
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~ 176 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNN 176 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCch
Confidence 4 367888898888665 346778888878888889999999999999887 55544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=81.45 E-value=22 Score=40.41 Aligned_cols=118 Identities=14% Similarity=0.044 Sum_probs=80.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCChHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~-~~~~~g~~~~A~~l~~~M~~~g---~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
....+.|.++++.+..+ -|+...|...-. .+...|++++|.+.|++..... -+.....|--+.-.++-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45789999999999986 488777765543 4456999999999999755321 11122333335556778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHHh
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRT 485 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~-------~~A~~l~~~M~~ 485 (732)
|.+.|..+.+.. .....+|..+..+| ...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999999998753 23344454444443 445666 888888887644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana | Back alignment and domain information |
|---|
Probab=81.11 E-value=3.7 Score=39.65 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=29.8
Q ss_pred eeeCCCCCCchHHHHHHHHh-----CCcEEEeCccc-ccccc----cccCCchhhhhhh
Q 004743 676 LYATPTGSNDDWYWLYAAIK-----FKCLLVTNDEM-RDHTF----QLLGNDFFPRWKE 724 (732)
Q Consensus 676 ~~~~~~~s~DD~~~lyaa~~-----~~~~~vsnD~~-RdH~~----~l~~~~~f~rW~~ 724 (732)
+++|+.+...|-|+.-.+-. .++.|||+|.. +.+.+ .-++.+-|.+|-.
T Consensus 70 Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~ 128 (166)
T PF05991_consen 70 VVFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSEEFLRELK 128 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHH
Confidence 56688876666666655554 26899999975 33333 2234455666543
|
The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=81.10 E-value=31 Score=36.23 Aligned_cols=112 Identities=15% Similarity=0.213 Sum_probs=71.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALS 430 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~pd--~~ty~~lI~ 430 (732)
.+..|.+.|++..|-+++.++ -..|-.. |++++|.+.|.+-... | .+. ...+.-+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 556666666666665555443 4455555 7888888888765432 3 222 345566778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC-----CCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVY-----PEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~-----pd~~t--y~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.+.|++++|.++|++....-+. .+... +.++| ++...|+...|.+.|++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999998875432 22322 23444 556679999999999998765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=80.58 E-value=33 Score=38.32 Aligned_cols=63 Identities=14% Similarity=-0.035 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
...|++ +-..|.+.|++++|...|++-.+. .||. .+|..+-.+|++.|+.++|.+.+++..+.
T Consensus 75 a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666 778889999999999999987664 4553 46899999999999999999999988765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=80.51 E-value=24 Score=39.34 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
+.+...|+.+-.+|.+.|++++|...|++-.+. .|+.. +|..+-.+|...|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999986654 57743 5788999999999999999999998875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=80.31 E-value=4.4 Score=33.09 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv-~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+|+.+=..|...|++++|...|++..+. |- .|+ ..+++.|-..|...|+.++|.+++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788888999999999999999987643 21 133 5678888888999999999999998754
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.24 E-value=6.7 Score=31.43 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=24.8
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
|.+.+++++|.++++.+...+ +.+...|...-.++.+.|++++|...|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444455555555555555442 2233444444444555555555555555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 732 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-107 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-102 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185 | Back alignment and structure |
|---|
Score = 84.7 bits (209), Expect = 4e-19
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 14/132 (10%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATPTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
++ + + L TP+ DD + + A + ++V+ND RD +
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQ 143
Query: 718 FFPRWKERHQAS 729
+ R+ E
Sbjct: 144 EWKRFIEERLLM 155
|
| >3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Length = 223 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 1e-15
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 14/132 (10%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATP--------TGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGND 717
++ + + L TP DD + + A + ++V+ND RD +
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQ 143
Query: 718 FFPRWKERHQAS 729
+ R+ E
Sbjct: 144 EWKRFIEERLLM 155
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 78/565 (13%), Positives = 158/565 (27%), Gaps = 173/565 (30%)
Query: 8 NTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLST 67
+ + +LF L K + + +F+ L+ Q + T
Sbjct: 59 DAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 68 TETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSR 127
+ RD+ D + K N SR +LK R
Sbjct: 110 RMYIEQ---------------------RDRL------YNDNQVFAKYNVSRLQ-PYLKLR 141
Query: 128 EMSSGNSSLRSKDKKIGI-------KSSKTVNREVDNQKMEQRTNDSGQY--KVRGITDE 178
+ LR K + I K+ + +V Q D + +
Sbjct: 142 QALL---ELRP-AKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNL------ 189
Query: 179 KGSKKSKKDRSEQFQ---LRVELDMCSKRGDVMGAIRLYDKAQREGIK---LGQYHYNVL 232
+ S + E Q +++ + S R D I+L + + ++ + + N L
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 233 LYL---CSSAAVGVVKPAKSGSGMRTLDTFEVS--TMNSTELGDSRDMDNNGQLDYGSSP 287
L L ++ + + F +S + +T R
Sbjct: 248 LVLLNVQNA---------------KAWNAFNLSCKILLTT-----RFKQV---------- 277
Query: 288 MIDKLESNSSYRF--DDLDSTFNEKENLGQFSNG-HMK---LNSQLLDGRSNL------E 335
D L + ++ D T E + L ++L + E
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAE 335
Query: 336 RGPDDQSRKKDW--------------SIDNQDADEIRLSEDAKKYA----FQRGFEIYEK 377
D + +W S++ + E R K + F I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTI 390
Query: 378 -MCL---------DEVPMNE---ASLTAVGRMAMSMGDGDMAFDM-VKRMKSLGINPRLR 423
+ L V +N+ SL ++ + ++ VK ++ +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVY----PEEPELEALLRVSVEAGKGDRVY-- 477
+ F ++ + ++++ H + E PE L R V+
Sbjct: 451 DHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFLD 499
Query: 478 --YLLHKLR--TSVRKVSPSTADVI 498
+L K+R ++ S S + +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL 524
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 88/626 (14%), Positives = 175/626 (27%), Gaps = 209/626 (33%)
Query: 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKK------DRSEQF---QLRVELDMCS 202
E+D+ + + SG ++ K + +K + +F ++ E
Sbjct: 48 KEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QR 103
Query: 203 KRGDVMGAIRLY----DKAQREGIKLGQYHY----------NVLLYLCSSAAVGVVKPAK 248
+ + R+Y D+ + +Y+ LL L + V +
Sbjct: 104 QPSMMT---RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---- 156
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
G+ LG G + + + +
Sbjct: 157 ---GV---------------LG------------SGKTWVA-----LDVCLSYKVQCKMD 181
Query: 309 EKENLGQF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + + +L+ L D +W+ + + I+L + +
Sbjct: 182 ----FKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQA 232
Query: 367 AFQRGF--EIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421
+R + YE CL V + A AF++ K L + R
Sbjct: 233 ELRRLLKSKPYEN-CLLVLLNV----QNAKAWN-----------AFNL--SCKIL-LTTR 273
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLL 480
+ V D A + L+H E+++LL ++ D
Sbjct: 274 FKQ------VT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------ 317
Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
L V +P +IA E+ R G W+ W
Sbjct: 318 --LPREVLTTNPRRLSIIA------ESIRDGLATWDN------------------WKHVN 351
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEK-------FAESVASIAIKRERNSSFQ 593
++ + ++ L+P E K F S I
Sbjct: 352 CDKLTTII------------ESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL-----LS 393
Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWP---LIVLHN 650
W D V+ VVN + + +K P I + +
Sbjct: 394 LI--WFD--VIKSDVMV-------------------VVNKLHKYSLVEKQPKESTISIPS 430
Query: 651 --RRITGHKMDQP-VNRALIEKWKNADAL-YATPTGSNDDWYWLYAAIKFKCLLVTNDEM 706
+ ++ ++R++++ + D Y+ Y+ I + + E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPE- 488
Query: 707 RDHTFQLLGNDFFPRW---KERHQAS 729
R F+++ DF R+ K RH ++
Sbjct: 489 RMTLFRMVFLDF--RFLEQKIRHDST 512
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.85 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.85 | |
| 3v33_A | 223 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 99.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.81 | |
| 3v32_B | 185 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 99.8 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.54 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.5 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.45 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.39 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.26 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.26 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.24 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.23 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.22 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.22 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.2 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.16 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.13 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.12 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.1 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.1 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.08 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.08 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.04 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.98 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.97 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.94 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.92 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.91 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.77 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.69 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.59 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.58 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.52 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.41 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.4 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.39 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.32 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.31 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.27 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.22 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.18 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.18 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.18 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.16 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.13 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.12 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.1 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.04 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.02 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.01 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.98 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.9 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.83 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.78 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.71 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.65 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.64 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.63 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.58 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.55 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.54 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.49 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.33 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.3 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.23 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.22 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.17 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.15 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.06 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.04 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.02 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.01 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 96.98 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 96.97 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.96 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 96.95 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.95 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 96.93 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.91 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 96.9 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 96.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 96.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 96.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.79 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 96.68 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.66 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.64 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.62 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 96.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.59 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 96.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 96.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.34 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.24 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 96.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.18 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.16 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.16 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 96.15 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.12 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.07 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 95.76 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 95.67 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 95.61 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 95.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.51 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 95.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 95.38 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.35 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.32 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 95.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 95.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 95.04 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 95.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 94.99 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 94.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 94.69 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 94.57 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 94.51 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 94.46 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 94.25 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 94.07 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 93.95 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 93.74 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 93.46 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 93.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 93.42 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 93.25 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.04 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 92.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 92.52 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 92.51 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 92.35 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 92.17 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 92.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 91.95 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 91.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 90.85 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 90.75 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 90.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 90.65 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 89.78 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 89.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 89.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 89.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 88.86 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 88.78 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 88.75 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 88.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 87.92 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 87.46 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 85.24 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 84.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 84.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 80.92 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-86 Score=751.19 Aligned_cols=425 Identities=49% Similarity=0.847 Sum_probs=400.3
Q ss_pred hhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhc
Q 004743 267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (732)
Q Consensus 267 ~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~ 344 (732)
+++.++ ++. |...++.+|++ ||+.|++++|.++|++|.+.|+.||.+|||
T Consensus 14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn--------------------- 65 (501)
T 4g26_A 14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHYN--------------------- 65 (501)
T ss_dssp -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHHH---------------------
T ss_pred HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHHH---------------------
Confidence 345554 554 66779999999 999999999999999999999999888886
Q ss_pred cCCCCChhhhHHHHHHHHHhcc---------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 345 KDWSIDNQDADEIRLSEDAKKY---------AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g---------~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
+ ||++|++.+ .+++|.++|++|...|+.||.+|||+||++|++.|++++|+++|++|.+
T Consensus 66 -----------~-Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 133 (501)
T 4g26_A 66 -----------V-LLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA 133 (501)
T ss_dssp -----------H-HHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------H-HHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4 666666544 4789999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHH
Q 004743 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (732)
Q Consensus 416 ~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~ 495 (732)
.|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++|++.+..|++.||
T Consensus 134 ~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 134 FGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred cCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777888899
Q ss_pred HHHHHHHhchHHHHhccccchhHHHHHHHhhcCCCccccccCCCceeEEEEeeecCCCccCccccccccccCCHHHHHHH
Q 004743 496 DVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKF 575 (732)
Q Consensus 496 ~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~vt~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l 575 (732)
++|..||++......+...|+...+.+++...|+.|+.+.|.|...|.+..+.+...|.|.+|+..|+.++|+++|++.|
T Consensus 214 ~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l 293 (501)
T 4g26_A 214 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETF 293 (501)
T ss_dssp HHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHhhcCCccccccccceecccCCCCChhhHHHHHHHHHhhCCCCCccEEEeccccccC
Q 004743 576 AESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITG 655 (732)
Q Consensus 576 ~~~i~~~a~~~~~~~~~~~F~~~l~~~~pyD~v~d~~nv~~~~~~~~~~~~i~~vv~~l~~~~~~~~~~l~~l~~~~~~~ 655 (732)
.+.|.++++.++++++|+.|++|+++++|||+||||+|||||++++|++.||..||+.+++..+.+++||||+|+||+.+
T Consensus 294 ~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~ 373 (501)
T 4g26_A 294 AASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNG 373 (501)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTS
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999998
Q ss_pred CCCCChhhHHHHHHHHHcCceeeCCCCCCchHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 656 HKMDQPVNRALIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
.....|.+++++++|++++.+|+||++||||||||||||+.+|+|||||+||||+|+|+++++|.|||++|||+|+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~ 449 (501)
T 4g26_A 374 GPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRIS 449 (501)
T ss_dssp GGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEE
T ss_pred cccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEE
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999984
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=315.29 Aligned_cols=217 Identities=24% Similarity=0.282 Sum_probs=185.0
Q ss_pred chHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCccc
Q 004743 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246 (732)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~ 246 (732)
..++.+.+++.+++. ...|+ ..++.+|++|||.|++++|+++|++|++.|++||.+|||+||++|+..
T Consensus 7 s~~e~L~~~~~~k~~----~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------- 74 (501)
T 4g26_A 7 SPSENLSRKAKKKAI----QQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------- 74 (501)
T ss_dssp ---------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-------
T ss_pred chHHHHHHHHHHhcc----cCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-------
Confidence 345566666644433 23455 678999999999999999999999999999999999999999999932
Q ss_pred CCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhh
Q 004743 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQ 326 (732)
Q Consensus 247 ~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~ 326 (732)
+.. . . .++.+.+++|.++|++|...|+.||.+||+
T Consensus 75 ---~~~------------------~---------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn--- 109 (501)
T 4g26_A 75 ---EAA------------------T---------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATFT--- 109 (501)
T ss_dssp ---CCC------------------S---------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHH---
T ss_pred ---Cch------------------h---------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHHH---
Confidence 211 0 1 456677899999999999998888888775
Q ss_pred hhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004743 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (732)
Q Consensus 327 li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A 406 (732)
+ ||++|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|
T Consensus 110 -----------------------------~-lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 110 -----------------------------N-GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp -----------------------------H-HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------H-HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 6 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 407 ~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
.++|++|.+.|+.||..||++||.+||+.|++++|.+++++|.+.|+.|+..||+.|+..|+..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-20 Score=211.58 Aligned_cols=336 Identities=10% Similarity=-0.067 Sum_probs=193.0
Q ss_pred hhhhhhhhhhhhhhhcCCchHHHHHHHHhhcC---------CCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (732)
Q Consensus 149 ~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g---------~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~ 219 (732)
..++.... ...+.++.++|.++|+++.... ...+.+.+++..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 151 ~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 151 ACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444433 5668899999999998542111 000123456789999999999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHhc----------------------------ccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 220 EGIKLGQYHYNVLLYLCSSA----------------------------AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 220 ~Gi~pd~~tyn~LL~~~~~~----------------------------~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
.+-. +...+..+...+... ......+.+.|++++|..+|. ++.+
T Consensus 229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~~~ 300 (597)
T 2xpi_A 229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SING 300 (597)
T ss_dssp HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TSTT
T ss_pred hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hhhc
Confidence 6421 223333222111000 000112235667777777774 3333
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc---h------------------------
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL---N------------------------ 324 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~---~------------------------ 324 (732)
. -.+..+|+.++.+ +.+.|++++|..+|++|.+.+- .+..+++ .
T Consensus 301 ~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 371 (597)
T 2xpi_A 301 L--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371 (597)
T ss_dssp G--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred C--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc
Confidence 2 1256667777777 7777777777777777765541 1333333 0
Q ss_pred -----hhhhhccc-----cccCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 325 -----SQLLDGRS-----NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 325 -----~~li~~~~-----~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
..+...+. +.|...|..+... .| +..+|+. ++.+|++.|++++|.++|++|...+ +.+..+|+.+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIG-FAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 02222222 3444455554432 22 3445555 6666666666666666666666543 3355666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE--EPELEALLRVS 467 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd--~~ty~~Li~~~ 467 (732)
+.+|.+.|++++|.++|++|.+.. +.+..+|+.+...|++.|++++|.++|++|.+. +..|+ ..+|..+..+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 666666666666666666665542 234566666666666666666666666666554 55666 56666666666
Q ss_pred HhcCChHHHHHHHHHHHhccCCC-ChhHHHH-HHHHHhchHHHHh
Q 004743 468 VEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARL 510 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~~~~~-~p~t~~~-I~~~~~~~~~~~a 510 (732)
.+.|++++|.++|+++.+. .| .+.+|.. ...++..+...+|
T Consensus 527 ~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLL--STNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--SSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHH
Confidence 6666666666666666554 33 2234443 4444444444333
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=214.42 Aligned_cols=320 Identities=8% Similarity=-0.094 Sum_probs=240.3
Q ss_pred chhhhhhhhhhhhhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004743 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (732)
Q Consensus 147 ~~~~~~~~l~~~~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (732)
....++..+. ...+.++.++|..+|++|.. ..|+..+|..++.+|.+.|++++|+.+|+.+.. ..++.
T Consensus 83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS 150 (597)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred HHHHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccch
Confidence 3444555555 56688999999999999953 234558999999999999999999999998864 36899
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccC--------------CCC-Ccccccccccccccc
Q 004743 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK 291 (732)
Q Consensus 227 ~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~--------------g~~-d~~tyn~LI~~~~~~ 291 (732)
.+++.++.+|. +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 209 (597)
T 2xpi_A 151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV---- 209 (597)
T ss_dssp HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH----
Confidence 99999999999 8999999999995 222221 223 57789999999
Q ss_pred ccccccCChhHHHHHHHHHHHcCCCCCcccc-c-h-----------------------------------hhhhhccc--
Q 004743 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHMK-L-N-----------------------------------SQLLDGRS-- 332 (732)
Q Consensus 292 ~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty-~-~-----------------------------------~~li~~~~-- 332 (732)
|.+.|++++|..+|++|.+.+ |+.... . . ..++..++
T Consensus 210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred --HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999864 443221 1 0 01122222
Q ss_pred ---cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004743 333 ---NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (732)
Q Consensus 333 ---~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l 409 (732)
+.|..++.+|... .+|..+|+. ++.+|.+.|++++|.++|++|...+ +.+..+|+.++.+|.+.|+.++|.++
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455566666654 467888888 8888888888888888888888765 34677888888888888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 004743 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (732)
Q Consensus 410 ~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~ 489 (732)
+++|.+. .+.+..+|+.+..+|++.|++++|.++|++|.+.. ..+..+|+.++.+|++.|++++|.++|++|.+. .
T Consensus 362 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 437 (597)
T 2xpi_A 362 SNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--F 437 (597)
T ss_dssp HHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T
T ss_pred HHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 8888754 34567788888888888888888888888887643 235778888888888888888888888888766 4
Q ss_pred CC-hhHHHH-HHHHHhchHHHHhc
Q 004743 490 VS-PSTADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 490 ~~-p~t~~~-I~~~~~~~~~~~a~ 511 (732)
+. +.++.. +..+++.+...++.
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHH
Confidence 32 235554 55555555544443
|
| >3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-21 Score=187.81 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=102.3
Q ss_pred CccccccccceecccCC--CCChhhHHHHHHHHHhhCCCCCc-cEEEecccccc-CCCCCChhhHHHHHHHHHcCceeeC
Q 004743 604 PFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRIT-GHKMDQPVNRALIEKWKNADALYAT 679 (732)
Q Consensus 604 pyD~v~d~~nv~~~~~~--~~~~~~i~~vv~~l~~~~~~~~~-~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (732)
.--|||||+|||++.++ .|++.+|..+|++|++ +|+. ++|+++..+.. .+...+..++++|++|.+.+.|++|
T Consensus 24 lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~T 100 (223)
T 3v33_A 24 LRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFT 100 (223)
T ss_dssp BCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEE
T ss_pred CCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEEC
Confidence 45689999999987655 7899999999999999 7777 44566554433 2334456789999999999999999
Q ss_pred CCC--------CCchHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 680 PTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 680 ~~~--------s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
|++ ++||+|||++|.+.+++|||||+||||.. ....|.+|.+.|+|.|+
T Consensus 101 Ps~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~---e~p~~k~~Ie~rlI~yt 157 (223)
T 3v33_A 101 PSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYS 157 (223)
T ss_dssp CEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHT---TCHHHHHHHHHHEECCE
T ss_pred CCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHh---hCHHHHHHHHhCeeeEE
Confidence 999 89999999999999999999999999985 23468899999999985
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=219.20 Aligned_cols=126 Identities=15% Similarity=0.006 Sum_probs=115.8
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
-.+|||+ ||++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|++.|+.||++|||
T Consensus 126 ~~~Tyna-LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLA-FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3568889 99999999999999999998874 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 427 PALSVFCNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 427 ~lI~~~~~~g~~-~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
+||.++|+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+-++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999985 78999999999999999999999999887776544333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.4e-21 Score=221.16 Aligned_cols=165 Identities=10% Similarity=-0.065 Sum_probs=134.4
Q ss_pred CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHH
Q 004743 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (732)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (732)
-.+|||+||++ ||+.|++++|.++|++|.+. ..+|+.||++|||+
T Consensus 126 ~~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m-----------------------------~~kG~~PdvvTYNt 170 (1134)
T 3spa_A 126 QQQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQ-----------------------------RQKRKLLTLDMYNA 170 (1134)
T ss_dssp HHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHS-----------------------------HHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHH-----------------------------hhcCCCCCHhHHHH
Confidence 34689999999 99999999999999998653 23355556666668
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
||+|||+.|++++|.++|++|.+.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.++|+++|.++.+.
T Consensus 171 -LI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 171 -VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp -HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred -HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999999999999999999999999999999999999999985 78999999999999999999999999887776
Q ss_pred CChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCC---------hHHHHHHHHH
Q 004743 436 GDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAGK---------GDRVYYLLHK 482 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd------~~ty~~Li~~~~~~g~---------~~~A~~l~~~ 482 (732)
+-++... ++ ..++.|+ ..|...|.+.|.+.+. .++...+|++
T Consensus 250 ~vL~~Vr----kv-~P~f~p~~~~~~~~~t~~LL~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 250 TVLKAVH----KV-KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHHHHG----GG-CCCCCCCCCCCCCCCCCTTTHHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHHHHH----Hh-CcccCCCCCCcccccchHHHHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 5443333 33 3455555 5566777788877662 4566666654
|
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-20 Score=178.18 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=101.8
Q ss_pred CCccccccccceecccCC--CCChhhHHHHHHHHHhhCCCCCcc-EEEecccccc-CCCCCChhhHHHHHHHHHcCceee
Q 004743 603 GPFEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKWP-LIVLHNRRIT-GHKMDQPVNRALIEKWKNADALYA 678 (732)
Q Consensus 603 ~pyD~v~d~~nv~~~~~~--~~~~~~i~~vv~~l~~~~~~~~~~-l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 678 (732)
..--|||||+|||++.++ .|++.+|..+|++|++ +|+.+ +|+++..+.. .++.....+++++++|.+.+.++.
T Consensus 23 ~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~ 99 (185)
T 3v32_B 23 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF 99 (185)
T ss_dssp CBCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEE
T ss_pred CCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEE
Confidence 345689999999988665 7899999999999999 67764 4565544433 233445778999999999999999
Q ss_pred CCCC--------CCchHHHHHHHHhCCcEEEeCcccccccccccCCchhhhhhhccccccc
Q 004743 679 TPTG--------SNDDWYWLYAAIKFKCLLVTNDEMRDHTFQLLGNDFFPRWKERHQASVH 731 (732)
Q Consensus 679 ~~~~--------s~DD~~~lyaa~~~~~~~vsnD~~RdH~~~l~~~~~f~rW~~~hq~~~~ 731 (732)
||++ ++||+|||++|.+.+|+|||||+||||..+ ...+.+|.+.|+|.|+
T Consensus 100 TPs~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~yt 157 (185)
T 3v32_B 100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYS 157 (185)
T ss_dssp ECCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCE
T ss_pred CCCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeE
Confidence 9999 899999999999999999999999999862 2357777899999985
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=141.94 Aligned_cols=287 Identities=11% Similarity=-0.032 Sum_probs=199.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~LL~~~~ 237 (732)
...+.++.++|.+.|+.+.+. .| .+..+|..+..++.+.|++++|++.|+++.+. .|+.. .+..+-..|.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~--~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRL--KP-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CT-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc--Cc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 344667788888888877543 11 23356778888888888888888888887764 34433 3444444555
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
..|++++|...|. ++... ...+..+|+.+... +...|++++|...|+++.+.. |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence 6788888888884 44432 22255668888777 888888888888888887753 4
Q ss_pred Ccc-ccc-hhhhhhc--cccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004743 318 NGH-MKL-NSQLLDG--RSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (732)
Q Consensus 318 d~~-ty~-~~~li~~--~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~ 392 (732)
+.. .|. .+.+... ..+.|...+..... +.|+ ..+|+. +...|.+.|++++|.+.|+++.+.. +.+..+|..
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 276 (388)
T 1w3b_A 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCN 276 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 432 222 1111111 11222223333322 3454 455666 8888888999999999998888754 335678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
+...+.+.|++++|.+.|+++.+. .+.+..+|+.+...+.+.|++++|.+.++++.+.. ..+..+|..+..+|.+.|+
T Consensus 277 l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 277 LANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 888999999999999999888876 34567888888888999999999999998887642 3346788888888899999
Q ss_pred hHHHHHHHHHHHhc
Q 004743 473 GDRVYYLLHKLRTS 486 (732)
Q Consensus 473 ~~~A~~l~~~M~~~ 486 (732)
+++|...|+++.+.
T Consensus 355 ~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 355 LQEALMHYKEAIRI 368 (388)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-12 Score=135.25 Aligned_cols=307 Identities=10% Similarity=-0.051 Sum_probs=227.1
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
-+.++.++|.+.++.+.+. . +.+...+..+-..+.+.|++++|..+++...+.. +.+..+|..+-..|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~--~-----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~--- 78 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQ--E-----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK--- 78 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHH--C-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---
T ss_pred HHCCCHHHHHHHHHHHHHh--C-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH---
Confidence 3678999999999888543 1 2233566677778888999999999998888653 557889999999999
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
+.|++++|...|. ++... ...+...|..+..+ +.+.|++++|...|.++.+. .|+..
T Consensus 79 -------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~~ 135 (388)
T 1w3b_A 79 -------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQY--NPDLY 135 (388)
T ss_dssp -------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHH--CTTCT
T ss_pred -------HCCCHHHHHHHHH-------HHHHc-CcchHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCcH
Confidence 7899999999995 44432 22244568888888 99999999999999998876 47665
Q ss_pred ccc--hhhhhh--ccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004743 321 MKL--NSQLLD--GRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (732)
Q Consensus 321 ty~--~~~li~--~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~ 395 (732)
... .+.+.. +..+.|...+..+... .|+ ..+|+. +...|.+.|++++|.+.|+++.... +-+...|..+-.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 211 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGN 211 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 443 111111 2224555566666543 344 456666 8888999999999999999988754 345678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
.+...|++++|...+++.... .| +..+|..+...|.+.|++++|.+.|+++.+.. ..+..+|..+...|.+.|+++
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999887765 34 46788889999999999999999999988764 234678888999999999999
Q ss_pred HHHHHHHHHHhccCCCC-hhHHHH-HHHHHhchHHHHh
Q 004743 475 RVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARL 510 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a 510 (732)
+|..+|+++.+. .|. +.++.. ...++..+...++
T Consensus 289 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999998876 332 334444 4444444444333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-11 Score=134.90 Aligned_cols=292 Identities=9% Similarity=-0.067 Sum_probs=187.2
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++.++|..+|+.+.+. .+.+..+|..+..+|.+.|++++|+..|+++.+.+ +.+...+..+...|.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 455788999999999998654 23356899999999999999999999999999865 345788899999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc---ccccccccc------ccccccccccCChhHHHHHHHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~---~tyn~LI~~------~~~~~~~~~~g~~~~A~~lf~e 309 (732)
+.|++++|...|. ++... ...+. ..|..++.. ......+...|++++|..+|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8899999999995 44432 22233 444444221 0001227789999999999999
Q ss_pred HHHcCCCCC-ccccchhhhhhcc-----ccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Q 004743 310 KENLGQFSN-GHMKLNSQLLDGR-----SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 310 M~~~gi~Pd-~~ty~~~~li~~~-----~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (732)
+.+.. |+ ...+. .+...+ .+.|...+..+.... ..+..+|+. +...|.+.|++++|.+.|+++....
T Consensus 169 ~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 169 ILEVC--VWDAELRE--LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHC--TTCHHHHH--HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC--CCChHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 98753 32 23332 222222 134444454444321 123445555 6666666677777777776666432
Q ss_pred CCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHH
Q 004743 384 PMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEE 446 (732)
Q Consensus 384 ~pd~~ty~~L------------I~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (732)
+.+...+..+ ...|.+.|++++|..+|+++.+. .|+ ...|..+...+.+.|++++|.+.++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2233334433 56666667777777777666653 233 3356666666666677777777666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 447 ~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.+.. ..+...|..+..+|...|++++|...|++..+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 665542 224566666666666667777777776666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-11 Score=129.02 Aligned_cols=246 Identities=10% Similarity=0.037 Sum_probs=160.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..+|. ..|+.++|...|. +
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~ 85 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----------AMGKSKAALPDLT-------K 85 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------H
Confidence 455789999999999999999999999999753 456889999999999 8899999999995 4
Q ss_pred hcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc----cccchhhhhhccccccCCCchhhhc
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG----HMKLNSQLLDGRSNLERGPDDQSRK 344 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~----~ty~~~~li~~~~~~a~~~~~~m~~ 344 (732)
+.+. +..+...|..+... +.+.|++++|..+|+++.+.. |+. ..+. .+...+.
T Consensus 86 al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~------------ 142 (450)
T 2y4t_A 86 VIQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQS--QLIKSDE------------ 142 (450)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHH--HHHHHHH------------
T ss_pred HHhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHH--HHHHHHH------------
Confidence 4443 33356678888888 999999999999999998753 443 2222 1111100
Q ss_pred cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 004743 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 424 (732)
...+.. +-..+.+.|++++|.++|+++.... +.+..++..+..+|.+.|++++|.++|+++.+.. +.+..+
T Consensus 143 ------~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 143 ------MQRLRS-QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp ------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred ------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 000011 2334556666666666666665532 3355666666666666666666666666665441 234556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH------------HHHHHhcCChHHHHHHHHHHHhc
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEAL------------LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~L------------i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|..+...|...|+.++|.+.|+++.+. .|+ ...+..+ ...|.+.|++++|..+|+++...
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666666666666666543 233 2223333 45566666666666666666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-12 Score=137.68 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=93.6
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
.+.++.++|.+.++.+ +. | .+|..|..++.+.|++++|++.|.+. +|..+|..++.+|.
T Consensus 14 ~~~~~ld~A~~fae~~------~~----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae--- 72 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NE----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN--- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CC----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH---
Confidence 3777899999999998 11 2 58999999999999999999999753 68889999999998
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
..|++++|+..+. |..+ ..++..+.+.|+.+ |++.|+++++.++++ .|+..
T Consensus 73 -------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn~~ 123 (449)
T 1b89_A 73 -------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNNA 123 (449)
T ss_dssp ----------------------------------------------------------CHHHHTTTTT-------CC---
T ss_pred -------hCCCHHHHHHHHH--------HHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCcHH
Confidence 8899999999773 4443 34467789999999 999999999987774 24444
Q ss_pred ccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004743 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (732)
Q Consensus 321 ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~ 400 (732)
+|+. +-+.|...|++++|..+|..+ ..|..|+.++.+.
T Consensus 124 --------------------------------a~~~-IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 124 --------------------------------HIQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp ----------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred --------------------------------HHHH-HHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 4446 888999999999999999987 3699999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
|++++|.+.+..+ .++.+|..++.+|+..|+++.|...... +..+......++..|.+.|++++|..+|
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999887 3789999999999999999999655443 3334444667999999999999999999
Q ss_pred HHHHhc
Q 004743 481 HKLRTS 486 (732)
Q Consensus 481 ~~M~~~ 486 (732)
+.-...
T Consensus 231 e~aL~l 236 (449)
T 1b89_A 231 EAALGL 236 (449)
T ss_dssp HHHTTS
T ss_pred HHHhCC
Confidence 887544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-09 Score=112.61 Aligned_cols=256 Identities=9% Similarity=-0.064 Sum_probs=198.2
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|..+|+++.+.. +.+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...|.
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~-- 100 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT-- 100 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH--
Confidence 447789999999999986642 2245788899999999999999999999998763 346778888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccc--------------cc-cccccccccccCChhHHH
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDLD 304 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~L--------------I~-~~~~~~~~~~~g~~~~A~ 304 (732)
..|+.++|...+. +.... ...+...+..+ .. . +...|++++|.
T Consensus 101 --------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~ 158 (327)
T 3cv0_A 101 --------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYRECR 158 (327)
T ss_dssp --------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHHH
T ss_pred --------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHHH
Confidence 7899999999995 33332 11122233333 22 3 67788999999
Q ss_pred HHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC
Q 004743 305 STFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (732)
Q Consensus 305 ~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (732)
.+|+++.+.. |+ +...+.. +...|.+.|++++|.+.|+++.... +
T Consensus 159 ~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~ 203 (327)
T 3cv0_A 159 TLLHAALEMN--PN-------------------------------DAQLHAS-LGVLYNLSNNYDSAAANLRRAVELR-P 203 (327)
T ss_dssp HHHHHHHHHS--TT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHhhC--CC-------------------------------CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 9999887653 21 2223444 7788999999999999999988764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---------
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP--------- 455 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--------- 455 (732)
.+..+|..+...+...|++++|...+++..+.. +.+...|..+...|.+.|+.++|.+.+++..+..-..
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 282 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence 467889999999999999999999999987763 3357788889999999999999999999987653221
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 456 --EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 456 --d~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
+...|..+..+|.+.|+.++|..++++.
T Consensus 283 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 283 EATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4778899999999999999999988643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-09 Score=113.00 Aligned_cols=259 Identities=9% Similarity=-0.075 Sum_probs=205.8
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|.++|+.+.+... .+...+..++..+.+.|++++|+.+|+++.+.. +-+...|..+-..|.
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-- 101 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL-- 101 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH--
Confidence 3456899999999999865421 122466777888899999999999999999753 234667777777777
Q ss_pred ccCCcccCCCC-ChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 240 AVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 240 ~~~~~~~~k~g-~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
..| +.++|...|. +.... ...+...|..+... +...|++++|...|++..+.. |+
T Consensus 102 --------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 157 (330)
T 3hym_B 102 --------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--KG 157 (330)
T ss_dssp --------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--TT
T ss_pred --------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--cc
Confidence 678 8999999995 33332 22255568888888 999999999999999887753 22
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
+...+.. +...|...|++++|.+.|++..... +.+..+|..+...+.
T Consensus 158 -------------------------------~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 158 -------------------------------CHLPMLY-IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAF 204 (330)
T ss_dssp -------------------------------CSHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred -------------------------------cHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 1122334 6778899999999999999998764 456789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004743 399 SMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g--------~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (732)
..|++++|...+++..+.. ...+..+|..+-..|...|+.++|.+.+++..+.. ..+...|..+-..|.+.
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHh
Confidence 9999999999999987641 13346788999999999999999999999998764 33577889999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 004743 471 GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 471 g~~~~A~~l~~~M~~~ 486 (732)
|+.++|...|++..+.
T Consensus 284 g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 284 GNFENAVDYFHTALGL 299 (330)
T ss_dssp TCHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHHcc
Confidence 9999999999988765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-09 Score=115.99 Aligned_cols=257 Identities=10% Similarity=-0.077 Sum_probs=189.0
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++..+|...|+.+.+.. +.+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...|.
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~- 143 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 143 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 3447789999999999996542 2345789999999999999999999999999764 346888999998998
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccc---------------ccccccccccccccCChhHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL 303 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~---------------LI~~~~~~~~~~~~g~~~~A 303 (732)
..|+.++|...+. ++... ...+...+.. .+.. +...|++++|
T Consensus 144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 200 (368)
T 1fch_A 144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV 200 (368)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence 8899999999995 33332 1112222221 2333 4477888888
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Q 004743 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 304 ~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (732)
...|+++.+.. |+.. +..+|.. +...|.+.|++++|.+.|++.....
T Consensus 201 ~~~~~~a~~~~--p~~~-----------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~- 247 (368)
T 1fch_A 201 KELFLAAVRLD--PTSI-----------------------------DPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVR- 247 (368)
T ss_dssp HHHHHHHHHHS--TTSC-----------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhC--cCcc-----------------------------cHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88888877642 2210 1223444 7778888888889988888887653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---------
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY--------- 454 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~--------- 454 (732)
+.+..+|..+...|...|++++|...|++..+.. +.+...|..+-..|.+.|++++|.+.|+.+.+..-.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 3457788888888888899999988888877652 234677888888888889999988888887654211
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 455 -PEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 455 -pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
....+|..|..+|.+.|+.++|..++.
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 125788888888888888888887765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-09 Score=119.97 Aligned_cols=294 Identities=11% Similarity=-0.058 Sum_probs=210.8
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
..+.++..+|.+.|+++.... |+...|..+..+|.+.|++++|++.|+++.+.+ +-+...|..+..+|.
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-- 84 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE-- 84 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH--
T ss_pred HHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH--
Confidence 446789999999999997653 566899999999999999999999999999765 345678888999998
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccccccc--------------------------------
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP-------------------------------- 287 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~-------------------------------- 287 (732)
+.|+.++|...|. .+..... .+......++..
T Consensus 85 --------~~g~~~~A~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (514)
T 2gw1_A 85 --------GLGKFADAMFDLS-------VLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA 148 (514)
T ss_dssp --------HTTCHHHHHHHHH-------HHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred --------HHhhHHHHHHHHH-------HHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh
Confidence 8899999999985 3322211 000000000000
Q ss_pred -------------------------c------------------cc-cccccccCChhHHHHHHHHHHH-----cCCCCC
Q 004743 288 -------------------------M------------------ID-KLESNSSYRFDDLDSTFNEKEN-----LGQFSN 318 (732)
Q Consensus 288 -------------------------~------------------~~-~~~~~~~g~~~~A~~lf~eM~~-----~gi~Pd 318 (732)
. .. ...+.+.|++++|..+|+++.+ ..-.|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcc
Confidence 0 00 0001236778888888887776 322333
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
..... ..+...|.. +...+...|++++|.++|+++.... |+..+|..+...|.
T Consensus 229 ~~~~~------------------------~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~ 281 (514)
T 2gw1_A 229 DEKLK------------------------EKLAISLEH-TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMA 281 (514)
T ss_dssp CHHHH------------------------HHHHHHHHH-HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccccC------------------------hHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHH
Confidence 22111 012334445 7788899999999999999998765 44888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (732)
..|++++|...++++.... +.+...|..+...|...|++++|...+++..+.. ..+...+..+...|.+.|++++|..
T Consensus 282 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 282 DRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp TSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999987653 3456788889999999999999999999998764 2356788888999999999999999
Q ss_pred HHHHHHhccCCCC-hhHHHH-HHHHHhchHHHHhc
Q 004743 479 LLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 479 l~~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (732)
+|+++.+. .+. +..+.. ...+...+...++.
T Consensus 360 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 360 LFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99998876 332 334433 44555555544443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.6e-10 Score=117.69 Aligned_cols=258 Identities=10% Similarity=-0.063 Sum_probs=193.0
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++.++|.+.|+.+.+.. +.+..+|..+...|.+.|++++|+..|+++.... +.+..+|..+...|.
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 144 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT- 144 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 3457789999999999986642 2345899999999999999999999999999764 345788999999999
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCc----------cccccccccccccccccccCChhHHHHHHH
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~----------~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~ 308 (732)
..|++++|...|. ++.+. ...+. ..++.+... +...|++++|..+|+
T Consensus 145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL 201 (365)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence 8899999999995 33321 11111 123344566 888999999999999
Q ss_pred HHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH
Q 004743 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (732)
++.+.. |+. ++...|+. +...|.+.|++++|.+.|++..... +.+..
T Consensus 202 ~al~~~--p~~-----------------------------~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 248 (365)
T 4eqf_A 202 EAAHQN--GDM-----------------------------IDPDLQTG-LGVLFHLSGEFNRAIDAFNAALTVR-PEDYS 248 (365)
T ss_dssp HHHHHS--CSS-----------------------------CCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHhC--cCc-----------------------------cCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 887752 321 12334445 7788889999999999999988753 44688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-----------YPEE 457 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-----------~pd~ 457 (732)
+|+.+..+|...|++++|...|++..+.. +.+..+|..+-..|.+.|+.++|.+.|+++.+..- ..+.
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence 99999999999999999999999988762 23477888899999999999999999998875420 1135
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 004743 458 PELEALLRVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~l~~~ 482 (732)
..|..|-.++...|+.+.+..+..+
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7788888999999998888776553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-10 Score=119.84 Aligned_cols=246 Identities=9% Similarity=-0.047 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...|..+-..+.+.|++++|+++|+++.+.. +.+..+|..+-..|. +.|++++|...|. +.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~a 125 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RC 125 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 33568888899999999999999999999764 346888999999999 8899999999995 44
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
... ...+...|..+... +...|++++|...|+++.+.. |+..... ... ..
T Consensus 126 l~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~--~~~-------------------~~ 175 (365)
T 4eqf_A 126 LEL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLV--KNK-------------------KG 175 (365)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------
T ss_pred Hhc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHH--hhh-------------------cc
Confidence 432 22256668888888 999999999999999998753 3322111 000 00
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
....++. +...|.+.|++++|.++|+++...... ++..+|..+...|...|++++|.+.|++..+.. +.+..+|+.+
T Consensus 176 ~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 253 (365)
T 4eqf_A 176 SPGLTRR-MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRL 253 (365)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 1112223 567888999999999999999986422 268899999999999999999999999988763 3457899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
...|.+.|++++|.+.|+++.+.. ..+...|..+-.+|.+.|++++|...|++..+.
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998763 334788999999999999999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-09 Score=112.26 Aligned_cols=274 Identities=9% Similarity=-0.027 Sum_probs=195.3
Q ss_pred cCCchHHH-HHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 004743 164 TNDSGQYK-VRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (732)
Q Consensus 164 ~~~~~A~~-v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~ 242 (732)
++.++|.. .|++.... .++. ...+...|..+-..+.+.|++++|+.+|+++.+.. +.+...|..+-..|.
T Consensus 39 ~~~~~a~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----- 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQF--EEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----- 109 (368)
T ss_dssp -------CHHHHCCCCC--CSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhhhHHHhc--CCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence 45556665 55543211 1221 11133567788889999999999999999999764 446778888888888
Q ss_pred CcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcccc
Q 004743 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (732)
Q Consensus 243 ~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty 322 (732)
+.|++++|...|. +.... ...+..+|..+... +...|++++|...|+++.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~al~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 168 (368)
T 1fch_A 110 -----ENEQELLAISALR-------RCLEL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHL 168 (368)
T ss_dssp -----HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGG
T ss_pred -----HCcCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHH
Confidence 8899999999995 44433 22256668888888 999999999999999998764 332222
Q ss_pred chhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 004743 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMG 401 (732)
Q Consensus 323 ~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~ty~~LI~~~~~~g 401 (732)
. ... +... ....++. .+. .+..+.+.|++++|.+.|+++...... ++..+|..+...|...|
T Consensus 169 ~--~~~-~~~~-----------~~~~~~~-~~~--~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 169 V--TPA-EEGA-----------GGAGLGP-SKR--ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp C--C----------------------------C--TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred H--HHH-HHHh-----------hhhcccH-HHH--HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 1 000 0000 0000000 000 223334889999999999999876422 25889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
++++|...+++..... +.+..+|..+...|...|++++|.+.|+++.+.. ..+...|..+...|.+.|++++|...|+
T Consensus 232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988762 3357789999999999999999999999998764 3457889999999999999999999999
Q ss_pred HHHhc
Q 004743 482 KLRTS 486 (732)
Q Consensus 482 ~M~~~ 486 (732)
+....
T Consensus 310 ~al~~ 314 (368)
T 1fch_A 310 EALNM 314 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-09 Score=117.49 Aligned_cols=268 Identities=9% Similarity=0.002 Sum_probs=210.9
Q ss_pred hhcCCchHHHHHHHHhh-----cCCCCCCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~-----~g~~~~~~--~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~ 234 (732)
+.++.++|..+|+++.+ ....|+.. .+.+...|..+...+.+.|++++|+.+|+++.+.. |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 36788999999999866 21122221 12345788889999999999999999999999765 44788888888
Q ss_pred HHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcC
Q 004743 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (732)
.|. ..|++++|...+. +.... ...+...|..+... +...|++++|...|++..+..
T Consensus 279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence 888 8899999999995 44332 22255668888888 999999999999999887752
Q ss_pred CCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004743 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (732)
Q Consensus 315 i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI 394 (732)
|+ +...|.. +...|.+.|++++|.++|+++.... +.+..+|..+.
T Consensus 335 --~~-------------------------------~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 335 --PE-------------------------------NIFPYIQ-LACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp --SS-------------------------------CSHHHHH-HHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred --hh-------------------------------hHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 22 1123334 7788899999999999999998753 33567899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCC----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g-~~pd----~~ty~~lI~~~~~---~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..|...|++++|...++++.... -.|+ ...|..+...|.. .|++++|.+.++.+.+.. ..+...|..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 99999999999999999987642 1122 3388889999999 999999999999998764 3457788899999
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|.+.|+.++|...|++..+. .+...
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--ccccH
Confidence 99999999999999999887 55544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=106.66 Aligned_cols=246 Identities=8% Similarity=-0.083 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+...|. ..|+.++|...|. +...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 445666778899999999999999998764 336778888888888 7899999999995 3433
Q ss_pred cCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
. ...+...|..+... +...|++++|...|++..... |+..... ..+. ...|+.
T Consensus 84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--~~~~----------------~~~~~~ 136 (327)
T 3cv0_A 84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQLG--SVNL----------------QADVDI 136 (327)
T ss_dssp H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHHH--HHHh----------------HHHHHH
Confidence 2 22255567777788 999999999999999988753 3322221 0000 000111
Q ss_pred hhhHHHH-HH-HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 352 QDADEIR-LS-EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 352 ~tyn~~l-I~-~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
..... + .. .+...|++++|.++++++.... +.+..++..+...|...|++++|.+.++++.+.. +.+..+|..+.
T Consensus 137 ~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 137 DDLNV-QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHH-HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 11111 1 12 3677889999999999998764 3478899999999999999999999999988763 34577899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|...|+.++|.+.++++.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988764 345788999999999999999999999998776
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.5e-11 Score=128.39 Aligned_cols=211 Identities=13% Similarity=0.090 Sum_probs=81.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccc
Q 004743 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (732)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn 282 (732)
+.|++++|.++++++. +..+|..|..++. +.|++++|++.|. ..+|..+|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----------~~g~~~eAIdsfi-------------ka~D~~~y~ 65 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----------QKGMVKEAIDSYI-------------KADDPSSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----------HcCCHHHHHHHHH-------------cCCCHHHHH
Confidence 5688999999999993 3458999999999 8899999999994 233666899
Q ss_pred cccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHH
Q 004743 283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (732)
Q Consensus 283 ~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (732)
.++.+ +...|++++|..+++...+. .|+..+. +. ++.+|
T Consensus 66 ~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~--------------------------------~~-Li~~Y 104 (449)
T 1b89_A 66 EVVQA------ANTSGNWEELVKYLQMARKK--ARESYVE--------------------------------TE-LIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhH--------------------------------HH-HHHHH
Confidence 99999 99999999999966654442 3333333 25 99999
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~ 442 (732)
.+.|+++++.++++ .|+..+|+.+-..|...|.+++|..+|..+ ..|..+..++++.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 99999999998885 388889999999999999999999999976 58999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHhchHHHHh
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEAARL 510 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~~~I~~~~~~~~~~~a 510 (732)
+.+..+ .+..+|..++.+|+..|+++.|......+ ...|+ ...++.-+-+.|...++
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHH
Confidence 999988 38899999999999999999996655443 34566 33445555445444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=8e-09 Score=107.83 Aligned_cols=234 Identities=11% Similarity=-0.106 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..+..+...+...|++++|+++|+++.+.. +.+...+..+...+. ..|+.++|...+. ++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~ 84 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD 84 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence 567778888899999999999999998654 223445556666676 6789999999995 4443
Q ss_pred cCCCCCccccccccccccccccccccC-ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC
Q 004743 272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (732)
Q Consensus 272 ~~g~~d~~tyn~LI~~~~~~~~~~~~g-~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (732)
. ...+...|..+-.. +...| ++++|...|++..+.. |+ +
T Consensus 85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~-------------------------------~ 124 (330)
T 3hym_B 85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KT-------------------------------Y 124 (330)
T ss_dssp H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TT-------------------------------C
T ss_pred h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--Cc-------------------------------c
Confidence 3 22255667777777 88899 9999999999887642 22 1
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
...|.. +...|...|++++|.+.|++..... +.+..++..+...|...|++++|.+.+++..+.. +.+...|..+..
T Consensus 125 ~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 201 (330)
T 3hym_B 125 GPAWIA-YGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV 201 (330)
T ss_dssp THHHHH-HHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 223344 7788999999999999999998764 3345677779999999999999999999988763 345788899999
Q ss_pred HHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~g--------v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|...|++++|...+++..+.. ...+...|..+...|.+.|++++|...|++..+.
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999987642 1334578899999999999999999999998876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-09 Score=109.26 Aligned_cols=217 Identities=10% Similarity=-0.012 Sum_probs=107.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCC
Q 004743 200 MCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN 277 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~Gi~pd~--~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d 277 (732)
...-.|++..|+..++... ...|+. ...-.+..+|. ..|+.+.|...+. .. ..++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~~~ 64 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SAPE 64 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SCHH
T ss_pred HHHHHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CChh
Confidence 3344566666666555432 122332 22333445555 5566666665553 10 1113
Q ss_pred ccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHH
Q 004743 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
..++..+... ++..++.++|.+.++++...++.|+...+. ..
T Consensus 65 ~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--------------------------------~~ 106 (291)
T 3mkr_A 65 LQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFL--------------------------------LM 106 (291)
T ss_dssp HHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--------------------------------HH
T ss_pred HHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHH--------------------------------HH
Confidence 3345555555 666666666666666666655445443331 11
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSVFCN 434 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty---~~lI~~~~~ 434 (732)
+-..|.+.|++++|.+.+++ +.+...+..+...|.+.|++++|.+.|+++.+.. |+...+ ...+..+..
T Consensus 107 la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhC
Confidence 33445555555555555554 3445555555555555555555555555555442 332111 112222223
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+.++|..+|+++.+. ...+...|+.+-.++.+.|++++|...|++....
T Consensus 179 ~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp TTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555555555555544 2334455555555555555555555555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-08 Score=102.44 Aligned_cols=256 Identities=9% Similarity=0.000 Sum_probs=158.7
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
....++..+|...|+...+.. +.+...|..+-..+...|++++|+..|+++.+.. +-+...|..+-..|.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~-- 82 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL-- 82 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH--
Confidence 446789999999999986542 2345788999999999999999999999999763 235678888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCC---CCccccccc------------cccccccccccccCChhHHH
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDLD 304 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~---~d~~tyn~L------------I~~~~~~~~~~~~g~~~~A~ 304 (732)
..|+.++|...|. +.... .. .+...+..+ ... +...|++++|.
T Consensus 83 --------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A~ 140 (359)
T 3ieg_A 83 --------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAAI 140 (359)
T ss_dssp --------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHH
T ss_pred --------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHHH
Confidence 7899999999995 33332 22 122223333 344 88899999999
Q ss_pred HHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC
Q 004743 305 STFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (732)
Q Consensus 305 ~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (732)
.+|+++.+.. |+.. ..+.. +...|.+.|++++|.+.+++..... +
T Consensus 141 ~~~~~~~~~~--~~~~-------------------------------~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~-~ 185 (359)
T 3ieg_A 141 TFLDKILEVC--VWDA-------------------------------ELREL-RAECFIKEGEPRKAISDLKAASKLK-S 185 (359)
T ss_dssp HHHHHHHHHC--TTCH-------------------------------HHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-S
T ss_pred HHHHHHHHhC--CCch-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 9999987753 2211 11222 4455555666666666666655442 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHH------------HHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYG------------PALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~------------~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.+..+|..+...|...|++++|...|++..+.. |+ ...+. .+...+.+.|++++|.+.++++.+.
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345556666666666666666666666555431 22 11111 1133455566666666666655543
Q ss_pred CCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 452 GVYPEEP-----ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 452 gv~pd~~-----ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
. |+.. .|..+-..|.+.|++++|...+++..+.
T Consensus 264 ~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 264 E--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp C--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 2211 1233445555666666666666655554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-08 Score=107.32 Aligned_cols=221 Identities=12% Similarity=-0.015 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 195 n~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
-.+..+|...|+++.|+..++. .-.|+..++..+...+. ..|+.++|+..+. ++... +
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~----------~~~~~~~A~~~l~-------~ll~~-~ 95 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA----------SHSRRDAIVAELD-------REMSR-S 95 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH----------CSTTHHHHHHHHH-------HHHHS-C
T ss_pred HHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc----------CCCcHHHHHHHHH-------HHHhc-c
Confidence 3345566666666666654433 12344555555555555 5555666666663 33322 2
Q ss_pred C-C-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChh
Q 004743 275 M-D-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (732)
Q Consensus 275 ~-~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~ 352 (732)
+ + +...+..+-.. +...|++++|...|++ ..+...
T Consensus 96 ~~P~~~~~~~~la~~------~~~~g~~~~Al~~l~~------~~~~~~------------------------------- 132 (291)
T 3mkr_A 96 VDVTNTTFLLMAASI------YFYDQNPDAALRTLHQ------GDSLEC------------------------------- 132 (291)
T ss_dssp CCCSCHHHHHHHHHH------HHHTTCHHHHHHHHTT------CCSHHH-------------------------------
T ss_pred cCCCCHHHHHHHHHH------HHHCCCHHHHHHHHhC------CCCHHH-------------------------------
Confidence 1 2 22223333344 5666666666666654 111111
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty---~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+.. +...|.+.|++++|.+.|+++.... |+...+ .+++..+...|++++|..+|+++.+. .+.+...|+.+-
T Consensus 133 -~~~-l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la 207 (291)
T 3mkr_A 133 -MAM-TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQA 207 (291)
T ss_dssp -HHH-HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHH
T ss_pred -HHH-HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHH
Confidence 223 5566677777777777777776653 443211 12233333456777777777777665 344566677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~-A~~l~~~M~~~ 486 (732)
.++.+.|++++|.+.|++..+.. .-+..++..++..+...|+.++ +.++++++.+.
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777777777777777766543 2245566666667777777654 45666666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=100.83 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~ 271 (732)
..|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-..|. ..|++++|...+. +...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~ 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence 578888899999999999999999999887 78888999998998 8899999999995 2222
Q ss_pred c-CCCC-C----ccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc
Q 004743 272 S-RDMD-N----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (732)
Q Consensus 272 ~-~g~~-d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~ 345 (732)
. .... + ...|..+-.. +...|++++|...|++..... |+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~~-------------------------- 112 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RTA-------------------------- 112 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CCH--------------------------
T ss_pred hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--chh--------------------------
Confidence 1 0110 1 3557778788 999999999999999887642 221
Q ss_pred CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
..+.+.|++++|.+.++++.... +.+...|..+...+...|++++|...+++..+.. +.+...|
T Consensus 113 --------------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 176 (258)
T 3uq3_A 113 --------------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY 176 (258)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --------------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence 23456688999999999988753 2355778899999999999999999999988763 3457888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+-..|.+.|++++|...++...+.. ..+...|..+-..|.+.|+.++|...|++..+.
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 345788899999999999999999999988665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-07 Score=97.64 Aligned_cols=257 Identities=7% Similarity=-0.079 Sum_probs=196.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH--
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL----GQYHYNVL-- 232 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~p----d~~tyn~L-- 232 (732)
.....++..+|...|+...+.. +.+...|..+-..+.+.|++++|+..|+++.+. .| +...+..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALK-------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK 116 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH
Confidence 3446789999999999986542 124478999999999999999999999999864 35 33344333
Q ss_pred ----------HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhH
Q 004743 233 ----------LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (732)
Q Consensus 233 ----------L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (732)
...+. ..|++++|...+. ++.+. ...+...|..+-.. +...|++++
T Consensus 117 ~~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~ 172 (359)
T 3ieg_A 117 ADEMQRLRSQALDAF----------DGADYTAAITFLD-------KILEV-CVWDAELRELRAEC------FIKEGEPRK 172 (359)
T ss_dssp HHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHHHh-CCCchHHHHHHHHH------HHHCCCHHH
Confidence 24455 7799999999995 44332 22255567777777 999999999
Q ss_pred HHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 004743 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (732)
Q Consensus 303 A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (732)
|...|++..+.. |+ +...|.. +...|...|++++|.+.|++.....
T Consensus 173 A~~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 173 AISDLKAASKLK--SD-------------------------------NTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHTTC--SC-------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC--CC-------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999887652 22 2223444 7788999999999999999988753
Q ss_pred CCCCHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHH
Q 004743 383 VPMNEASLTA------------VGRMAMSMGDGDMAFDMVKRMKSLGINPRL-----RSYGPALSVFCNNGDVDKACSVE 445 (732)
Q Consensus 383 i~pd~~ty~~------------LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-----~ty~~lI~~~~~~g~~~~A~~l~ 445 (732)
+.+...+.. +...+.+.|++++|...+++..+.. |+. ..|..+-..|.+.|+.++|.+.+
T Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 219 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 233344432 3566889999999999999988753 442 23445678899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+...+.. ..+...|..+-..|.+.|++++|...|++..+.
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9998763 337889999999999999999999999999876
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-07 Score=105.83 Aligned_cols=292 Identities=11% Similarity=-0.042 Sum_probs=166.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
...+.++.++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|+++.+.. +.+...+..+-..+.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 104 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE- 104 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence 3457789999999999986642 2356889999999999999999999999999764 345778888888888
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc---------------------------------------
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG--------------------------------------- 279 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~--------------------------------------- 279 (732)
..|+.++|...|... ....+..+..
T Consensus 105 ---------~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 105 ---------SLGNFTDAMFDLSVL-------SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp ---------HHTCHHHHHHHHHHH-------C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred ---------HcCCHHHHHHHHHHH-------hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 778999999887421 1100000000
Q ss_pred -----------------------cccccccccccccccc--------ccCChhHHHHHHHHHHHcCCCCCccc-------
Q 004743 280 -----------------------QLDYGSSPMIDKLESN--------SSYRFDDLDSTFNEKENLGQFSNGHM------- 321 (732)
Q Consensus 280 -----------------------tyn~LI~~~~~~~~~~--------~~g~~~~A~~lf~eM~~~gi~Pd~~t------- 321 (732)
.+..+..+ ....+. ..|++++|..+|+++.+. .|+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDA--LQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAAL 244 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH--HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHH
Confidence 00001111 000011 114788899999888765 344321
Q ss_pred -cc-hh--hhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004743 322 -KL-NS--QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (732)
Q Consensus 322 -y~-~~--~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (732)
+. .+ ....+....|...+...... .|+...|.. +-..|.+.|++++|.+.|++..... +.+..+|..+...+
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIF-LALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH-HHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHH-HHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH
Confidence 11 00 00001112333334443332 344444444 5555666666666666666665543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004743 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (732)
...|++++|...+++..+.. +-+...|..+-..|...|++++|.++++++.+.. ..+...|..+...|...|++++|.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 66666666666666655542 1234455556666666666666666666665543 223445555666666666666666
Q ss_pred HHHHHHHh
Q 004743 478 YLLHKLRT 485 (732)
Q Consensus 478 ~l~~~M~~ 485 (732)
..|++..+
T Consensus 399 ~~~~~a~~ 406 (537)
T 3fp2_A 399 KQYDIAKR 406 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-08 Score=93.72 Aligned_cols=202 Identities=9% Similarity=-0.019 Sum_probs=138.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...|..+...+...|++++|+++|+.+.+.. +.+...|..+...|. ..|+.++|...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~--------- 66 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQESFR--------- 66 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH---------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHHHH---------
Confidence 34678888999999999999999999998753 234666666666666 5566666666663
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC-ccccchhhhhhccccccCCCchhhhccCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd-~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
+..+.. |+ ..++.
T Consensus 67 ---------------------------------------~a~~~~--~~~~~~~~------------------------- 80 (225)
T 2vq2_A 67 ---------------------------------------QALSIK--PDSAEINN------------------------- 80 (225)
T ss_dssp ---------------------------------------HHHHHC--TTCHHHHH-------------------------
T ss_pred ---------------------------------------HHHHhC--CCChHHHH-------------------------
Confidence 332221 22 11221
Q ss_pred CChhhhHHHHHHHHHhc-cCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 004743 349 IDNQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~-g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~ 426 (732)
. +...|... |++++|.+.|+++...+..|+ ...|..+...+...|++++|...++++.+.. +.+...+.
T Consensus 81 -------~-l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 151 (225)
T 2vq2_A 81 -------N-YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK 151 (225)
T ss_dssp -------H-HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred -------H-HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence 2 55667777 788888888877776333333 5667777777888888888888887776652 22466777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+...|.+.|+.++|.++++.+.+..-..+...+..+...+...|+.++|..+++.+...
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777778888888888888887776542145666777777777888888888888877654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.91 E-value=8.1e-08 Score=96.56 Aligned_cols=200 Identities=9% Similarity=-0.029 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
...|..+...+...|++++|+++|+++.+.. +.+...+..+...|. ..|+.++|...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~----------- 94 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEMEPKLADEEY----------- 94 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcCCHHHHHHHH-----------
Confidence 3677888889999999999999999998753 334566666666665 455555555555
Q ss_pred ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC-ccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd-~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
++..+.. |+ ...+
T Consensus 95 -------------------------------------~~a~~~~--~~~~~~~--------------------------- 108 (252)
T 2ho1_A 95 -------------------------------------RKALASD--SRNARVL--------------------------- 108 (252)
T ss_dssp -------------------------------------HHHHHHC--TTCHHHH---------------------------
T ss_pred -------------------------------------HHHHHHC--cCcHHHH---------------------------
Confidence 3333321 22 1112
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
.. +...|.+.|++++|.++|+++...+..| +...|..+...|...|++++|.+.+++..+.. +.+...|..+
T Consensus 109 -----~~-la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 181 (252)
T 2ho1_A 109 -----NN-YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEM 181 (252)
T ss_dssp -----HH-HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred -----HH-HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 12 5566777888888888888887743444 45677778888888888888888888877653 2346777788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
...|...|+.++|..+++.+.+.. ..+...+..+...+.+.|+.++|..+++++.+.
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888877643 345667777888888888888888888888776
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-07 Score=94.83 Aligned_cols=179 Identities=8% Similarity=-0.052 Sum_probs=139.7
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
+...|++++|..+|+++.+.. |+. ..+. . +...|.+.|++++|.
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~--~~~~~~~~--------------------------------~-la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEID--PSSADAHA--------------------------------A-LAVVFQTEMEPKLAD 91 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHC--TTCHHHHH--------------------------------H-HHHHHHHTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CChHHHHH--------------------------------H-HHHHHHHcCCHHHHH
Confidence 777888888888888887653 332 2221 3 667888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
++|+++.... +.+...|..+...|...|++++|.++++++...+..| +...|..+...|...|++++|.+.+++..+.
T Consensus 92 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 92 EEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999988764 3478899999999999999999999999988744555 4567888889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHH-HHHHHhchHHHHhc
Q 004743 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t~~~-I~~~~~~~~~~~a~ 511 (732)
. ..+...+..+...|.+.|+.++|..+|++..+. .+.. ..+.. ...+...+...++.
T Consensus 171 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 229 (252)
T 2ho1_A 171 N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAA 229 (252)
T ss_dssp C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHH
Confidence 4 345788999999999999999999999998875 4333 34433 44444555554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-07 Score=104.27 Aligned_cols=256 Identities=11% Similarity=0.022 Sum_probs=196.8
Q ss_pred cCCchHHHHHHHHhhcCCCCCCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~~~~p~-----~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
++..+|..+|+.+.+.. |+ .++ ..+|..+-..+...|++++|+..|+.+... .|+...|..+-..|.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~- 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA- 287 (537)
T ss_dssp HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence 46788999999885431 11 111 235777778889999999999999999975 466777877777777
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd 318 (732)
..|++++|...+. +.... ...+..+|..+... +...|++++|...|++..+.. |+
T Consensus 288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 342 (537)
T 3fp2_A 288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE 342 (537)
T ss_dssp ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence 8899999999995 34332 22255568888888 999999999999999887753 22
Q ss_pred ccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 319 ~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
+...|.. +...|.+.|++++|.++|+++.... +.+..+|..+...|.
T Consensus 343 -------------------------------~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 343 -------------------------------NVYPYIQ-LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp -------------------------------CSHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 1123334 7788999999999999999998764 445678999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g-----~~pd~~ty~~lI~~~~~~----------g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
..|++++|...|++..+.. .......+..+-..+... |++++|...|+...+.. ..+...|..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 9999999999999987652 111122233444567777 99999999999998764 3457889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
...|.+.|+.++|...|++..+.
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999998876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-07 Score=91.39 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=129.7
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCc-cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~-~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
+...|++++|..+|++..+.. |+. ..+ .. +...|...|++++|.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--------------------------------~~-l~~~~~~~~~~~~A~ 62 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSD--PKNELAW--------------------------------LV-RAEIYQYLKVNDKAQ 62 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHH--------------------------------HH-HHHHHHHTTCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchHHH--------------------------------HH-HHHHHHHcCChHHHH
Confidence 778888899998888887753 332 222 13 667888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 373 EIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
+.|++..... +.+..+|..+...|... |++++|..+++++.+.+..|+ ...|..+...+...|++++|.+.++++.+
T Consensus 63 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 63 ESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999998754 44778999999999999 999999999999988434444 57788889999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. ..+...+..+...|.+.|+.++|..++++....
T Consensus 142 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 142 AQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 64 335788899999999999999999999998776
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.9e-08 Score=99.17 Aligned_cols=85 Identities=11% Similarity=-0.074 Sum_probs=62.4
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..++.++|.+.|+++.+..... .+.+..+|..+...+...|++++|+..|+++.... +.+...|..+-..|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~---- 88 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT---- 88 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----
T ss_pred ccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH----
Confidence 4467788999999986642110 11245788899999999999999999999998764 235677777777777
Q ss_pred CCcccCCCCChhhHHHHhh
Q 004743 242 GVVKPAKSGSGMRTLDTFE 260 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~ 260 (732)
..|++++|...|.
T Consensus 89 ------~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 89 ------QAGNFDAAYEAFD 101 (275)
T ss_dssp ------HTTCHHHHHHHHH
T ss_pred ------HccCHHHHHHHHH
Confidence 6677777777764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-07 Score=92.46 Aligned_cols=188 Identities=11% Similarity=0.050 Sum_probs=145.6
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhh
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~l 327 (732)
..|++++|...|. +.... ...+...|..+... +...|++++|...|++..+.. |+
T Consensus 35 ~~~~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~--------- 89 (243)
T 2q7f_A 35 EFGDYEKAAEAFT-------KAIEE-NKEDAIPYINFANL------LSSVNELERALAFYDKALELD--SS--------- 89 (243)
T ss_dssp -------CCTTHH-------HHHTT-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred HhhCHHHHHHHHH-------HHHHh-CcccHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcC--Cc---------
Confidence 7788999999885 44332 22255567777777 889999999999999887652 21
Q ss_pred hhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004743 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (732)
Q Consensus 328 i~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~ 407 (732)
+...|.. +...|.+.|++++|.+.|+++.+.. +.+...|..+...+...|++++|.
T Consensus 90 ----------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 90 ----------------------AATAYYG-AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp ----------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred ----------------------chHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 2223334 7788889999999999999988764 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 408 ~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+++++.+.. +.+...|..+...|.+.|+.++|.+.++++.+.. ..+..+|..+...|.+.|+.++|...|++..+.
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 146 PYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999988762 3467788889999999999999999999988764 345778999999999999999999999998776
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=6.2e-07 Score=89.68 Aligned_cols=216 Identities=10% Similarity=0.026 Sum_probs=169.8
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVLL 233 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G--i~pd----~~tyn~LL 233 (732)
....++.++|...|++..+.. .+. ..|..+-..+...|++++|++.|+...... ..|+ ..+|..+-
T Consensus 15 ~~~~~~~~~A~~~~~~a~~~~--~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 15 FYKARQFDEAIEHYNKAWELH--KDI------TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CCT------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhh--ccH------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 446789999999999987764 333 789999999999999999999999988532 2233 47788888
Q ss_pred HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHc
Q 004743 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (732)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (732)
..|. +.|++++|...|. +.... . +. -.. +...|++++|...++++...
T Consensus 87 ~~~~----------~~~~~~~A~~~~~-------~a~~~-~--~~------~~~------~~~~~~~~~a~~~~~~~~~~ 134 (258)
T 3uq3_A 87 NAYH----------KLGDLKKTIEYYQ-------KSLTE-H--RT------ADI------LTKLRNAEKELKKAEAEAYV 134 (258)
T ss_dssp HHHH----------HTTCHHHHHHHHH-------HHHHH-C--CC------HHH------HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH----------HcccHHHHHHHHH-------HHHhc-C--ch------hHH------HHHHhHHHHHHHHHHHHHHc
Confidence 8888 7899999999995 33321 0 00 122 67778899999999888764
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004743 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (732)
Q Consensus 314 gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~L 393 (732)
. |+ +...|.. +-..+...|++++|.+.|++..... +.+..+|..+
T Consensus 135 ~--~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 179 (258)
T 3uq3_A 135 N--PE-------------------------------KAEEARL-EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNR 179 (258)
T ss_dssp C--HH-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred C--cc-------------------------------hHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 1 21 1223334 7788899999999999999998764 4468899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
...|...|++++|...+++..+.. +.+...|..+-..|.+.|+.++|.+.++...+.
T Consensus 180 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 180 AAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999988763 334778888999999999999999999987654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=93.35 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=145.3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
.....|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+...|. +.|+.++|...+. +
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~~-------~ 82 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFYD-------K 82 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH-------H
Confidence 344678888888999999999999999998643 345778888888888 7899999999995 3
Q ss_pred hcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCC
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
.... ...+...|..+... +...|++++|..+|++..+.. |+
T Consensus 83 ~~~~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~------------------------------ 123 (243)
T 2q7f_A 83 ALEL-DSSAATAYYGAGNV------YVVKEMYKEAKDMFEKALRAG--ME------------------------------ 123 (243)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHT--CC------------------------------
T ss_pred HHHc-CCcchHHHHHHHHH------HHHhccHHHHHHHHHHHHHhC--CC------------------------------
Confidence 3332 22255567777777 899999999999999887753 21
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
+...|.. +...|.+.|++++|.+.++++.... +.+...+..+...+...|++++|.+.|++..+.. ..+..+|..+
T Consensus 124 -~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 199 (243)
T 2q7f_A 124 -NGDLFYM-LGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNA 199 (243)
T ss_dssp -SHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 1223334 7788899999999999999988753 3467889999999999999999999999988763 3457788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCC
Q 004743 429 LSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
...|.+.|+.++|.+.++.+.+..
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999998753
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=95.27 Aligned_cols=222 Identities=10% Similarity=-0.087 Sum_probs=169.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc
Q 004743 203 KRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (732)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~---pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~ 279 (732)
..|++++|+..|+++.+.... .+..+|..+-..|. ..|++++|...|. +.... ...+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~~ 78 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMPE 78 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcHH
Confidence 458899999999999976422 13567777777777 7899999999995 44332 222556
Q ss_pred ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
.|..+-.. +...|++++|...|++..+.. |+ +...|.. +-
T Consensus 79 ~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~-------------------------------~~~~~~~-la 118 (275)
T 1xnf_A 79 VFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PT-------------------------------YNYAHLN-RG 118 (275)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CTHHHHH-HH
T ss_pred HHHHHHHH------HHHccCHHHHHHHHHHHHhcC--cc-------------------------------ccHHHHH-HH
Confidence 68888888 999999999999999887752 22 1223445 77
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..|.+.|++++|.+.|+++... .|+...+..++..+...|+.++|...+.+.... ..++...+. ++..+...++.+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ 194 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHH
Confidence 8899999999999999999875 355555556666667889999999999887765 334444444 777788889999
Q ss_pred HHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 440 KACSVEEHMLEHGVY--P-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~--p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|.+.+......... | +...|..+-..|.+.|+.++|...|++....
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999887644211 1 1577888999999999999999999999876
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.6e-07 Score=92.24 Aligned_cols=246 Identities=7% Similarity=-0.051 Sum_probs=141.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEV 261 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~ 261 (732)
.+..+|..+-..+...|++++|+.+|+++.+. .-......+..+-..|. ..|++++|...+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~- 93 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN- 93 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH-
Confidence 34578889999999999999999999999863 22233456666666676 6788888888884
Q ss_pred ccccchhhccc------CCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccc
Q 004743 262 STMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNL 334 (732)
Q Consensus 262 ~~~~s~em~~~------~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~ 334 (732)
+.... .... ....|..+-.. +...|++++|...|++..+...
T Consensus 94 ------~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~~------------------- 142 (311)
T 3nf1_A 94 ------DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIRE------------------- 142 (311)
T ss_dssp ------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHH-------------------
T ss_pred ------HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHH-------------------
Confidence 22211 0111 23346666666 7777777777777776654310
Q ss_pred cCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 004743 335 ERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMA 406 (732)
Q Consensus 335 a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A 406 (732)
... .+-.| ....+.. +-..|...|++++|.++|++.... +-.| ...++..+...|...|++++|
T Consensus 143 ------~~~-~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 143 ------KVL-GKDHPDVAKQLNN-LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp ------HHH-CTTCHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------Hhc-CCCChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 000 00011 1233444 666777777777777777776653 2122 234667777777777777777
Q ss_pred HHHHHHHHHc-------CCCCChhhHHHHH-------HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 407 FDMVKRMKSL-------GINPRLRSYGPAL-------SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 407 ~~l~~~M~~~-------g~~pd~~ty~~lI-------~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
.+.+++..+. ...+........+ ..+...+.+.+|...+....... ..+..+|..+...|.+.|+
T Consensus 215 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 215 ETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCC
Confidence 7777776643 1222222222222 22222334444444444443221 2234667888889999999
Q ss_pred hHHHHHHHHHHHh
Q 004743 473 GDRVYYLLHKLRT 485 (732)
Q Consensus 473 ~~~A~~l~~~M~~ 485 (732)
.++|..+|++..+
T Consensus 294 ~~~A~~~~~~al~ 306 (311)
T 3nf1_A 294 FEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-05 Score=82.47 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~ 270 (732)
..++..+=..|.+.|++++|++.|.+..+.+ +...+..|-..|.... ...|+.++|...|. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~ 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence 3567777788889999999999999999843 4566666666666200 02788999999995 333
Q ss_pred ccCCCCCccccccccccccccccccc----cCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g 346 (732)
+. + +...+..|-.. +.. .+++++|...|++..+.+ +..
T Consensus 70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------- 111 (273)
T 1ouv_A 70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------- 111 (273)
T ss_dssp HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHH--------------------------
T ss_pred HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---Ccc--------------------------
Confidence 32 2 34445555455 666 899999999998877654 222
Q ss_pred CCCChhhhHHHHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 004743 347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~ 418 (732)
.+.. +-..|.+ .+++++|.+.|++..+.+ +...+..+-..|.. .++.++|...|++..+.+
T Consensus 112 ------a~~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 112 ------GCAS-LGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp ------HHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ------HHHH-HHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 2223 5556666 899999999999998876 56778888888888 899999999999988774
Q ss_pred CCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
+...+..+-..|.. .++.++|.+.|+...+.+ +...+..|-..|.+ .++.++|...|++..+.
T Consensus 181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45667777788888 999999999999988875 36677777788888 89999999999988776
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.5e-07 Score=88.83 Aligned_cols=200 Identities=10% Similarity=-0.054 Sum_probs=143.8
Q ss_pred CCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhH
Q 004743 223 KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (732)
Q Consensus 223 ~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~ 302 (732)
+++...+..+-..+. +.|++++|...|. +.... ...+...|..+-.. +.+.|++++
T Consensus 2 p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al~~-~p~~~~a~~~lg~~------~~~~g~~~~ 57 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLY----------ALGRYDAALTLFE-------RALKE-NPQDPEALYWLART------QLKLGLVNP 57 (217)
T ss_dssp --CCHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT-SSSCHHHHHHHHHH------HHHTTCHHH
T ss_pred CCcHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHH
Confidence 345566777777777 7899999999995 33332 22255557777777 899999999
Q ss_pred HHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhc-----------cCHHHH
Q 004743 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----------YAFQRG 371 (732)
Q Consensus 303 A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~-----------g~~~~A 371 (732)
|...|++..+.. |+.. ..|.. +-..|.+. |++++|
T Consensus 58 A~~~~~~al~~~--P~~~-------------------------------~a~~~-lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 58 ALENGKTLVART--PRYL-------------------------------GGYMV-LSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp HHHHHHHHHHHC--TTCH-------------------------------HHHHH-HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcH-------------------------------HHHHH-HHHHHHHhhhhhhhhcccccCHHHH
Confidence 999999887752 4322 12223 55566666 999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 372 ~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
...|++..+.. +-+...|..+-..|...|++++|...|++..+.. .+...+..+-..|...|++++|...|+...+.
T Consensus 104 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 104 LSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988753 3357889999999999999999999999998887 78888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
. .-+...+..+-..+.+.|+.++|...|++..
T Consensus 181 ~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 181 A-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp S-TTCHHHHHHHHHHHTC---------------
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4 3356778888899999999999999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.2e-07 Score=88.13 Aligned_cols=199 Identities=14% Similarity=-0.043 Sum_probs=143.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchh
Q 004743 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (732)
Q Consensus 189 p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~e 268 (732)
++...|..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+. +.|+.++|...|. +
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~~-------~ 64 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENGK-------T 64 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------H
Confidence 444778888889999999999999999998643 335677777777777 7899999999995 3
Q ss_pred hcccCCCCCcccccccccccccccccccc-----------CChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCC
Q 004743 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSS-----------YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG 337 (732)
Q Consensus 269 m~~~~g~~d~~tyn~LI~~~~~~~~~~~~-----------g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~ 337 (732)
..+. ...+...|..+-.. +... |++++|...|++..+. .|+.
T Consensus 65 al~~-~P~~~~a~~~lg~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~------------------ 117 (217)
T 2pl2_A 65 LVAR-TPRYLGGYMVLSEA------YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRY------------------ 117 (217)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTC------------------
T ss_pred HHHh-CCCcHHHHHHHHHH------HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Cccc------------------
Confidence 3332 22244456666666 7777 9999999999888765 2332
Q ss_pred CchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004743 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (732)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (732)
...|.. +-..|...|++++|.+.|++..+.. .+...+..+-.+|...|++++|...|++..+..
T Consensus 118 -------------~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 118 -------------APLHLQ-RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp -------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -------------HHHHHH-HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 222334 6677889999999999999999877 788999999999999999999999999988752
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 418 ~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
+-+...+..+-..+...|+.++|.+.|++..
T Consensus 182 -P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 -PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -TTCHHHHHHHHHHHTC---------------
T ss_pred -CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 2346778888889999999999999988654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-06 Score=84.79 Aligned_cols=243 Identities=10% Similarity=0.006 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCCh-------hhHH
Q 004743 192 FQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTL 256 (732)
Q Consensus 192 ~tyn~lI~a~~k~----g~~----~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~-------~~A~ 256 (732)
..|...|+-.-+. ++. ++|+.+|++..... +-+...|..+...+...+. ...+.|++ ++|.
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHH
Confidence 4566666554443 233 78999999998642 3456677777766642100 00023554 8899
Q ss_pred HHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccC
Q 004743 257 DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLER 336 (732)
Q Consensus 257 ~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~ 336 (732)
.+|. +........+...|..+... +...|++++|..+|++..+. .|+...
T Consensus 85 ~~~~-------rAl~~~~p~~~~~~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~--------------- 134 (308)
T 2ond_A 85 NIYE-------RAISTLLKKNMLLYFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT--------------- 134 (308)
T ss_dssp HHHH-------HHHTTTTTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTH---------------
T ss_pred HHHH-------HHHHHhCcccHHHHHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCcc---------------
Confidence 9985 33321011244568888888 88999999999999988763 343221
Q ss_pred CCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 004743 337 GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 337 ~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~-~~g~~~~A~~l~~~M~~ 415 (732)
..|.. +...+.+.|++++|..+|++..+.. +++...|........ ..|+.++|..+|+...+
T Consensus 135 ---------------~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~ 197 (308)
T 2ond_A 135 ---------------LVYIQ-YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 197 (308)
T ss_dssp ---------------HHHHH-HHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred ---------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13445 7778888999999999999998764 344555554443322 36999999999999876
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 416 ~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v~p--d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
. .+-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 198 ~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 198 K-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp H-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred h-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 22356788889999999999999999999999874 455 4678999999999999999999999998876
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-06 Score=74.31 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
|.. +...|...|++++|..+|+++.... +.+..+|..+...+...|++++|..+++++...+ +.+...|..+...+.
T Consensus 4 ~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYN-LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 444 7788889999999999999998764 3467889999999999999999999999988764 345678888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|++++|.++++++.+.. ..+...+..+...+.+.|+.++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998764 345778889999999999999999999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-06 Score=85.95 Aligned_cols=233 Identities=10% Similarity=-0.081 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
.+...-..+.+.|++++|+.+|++..+.. +-+...+..+-..|. ..|++++|...+. +....
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~~ 66 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYY----------ELAKYDLAQKDIE-------TYFSK 66 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHH----------HTTCHHHHHHHHH-------HHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----------HHhhHHHHHHHHH-------HHHhc
Confidence 34455677889999999999999998753 223446777777887 7899999999995 44433
Q ss_pred CCCCCcc---ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 273 RDMDNNG---QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 273 ~g~~d~~---tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
.-.+.. .|..+-.. +...|++++|...|++..+.. |+
T Consensus 67 -~~~~~~~~~~~~~lg~~------~~~~~~~~~A~~~~~~a~~~~--~~------------------------------- 106 (272)
T 3u4t_A 67 -VNATKAKSADFEYYGKI------LMKKGQDSLAIQQYQAAVDRD--TT------------------------------- 106 (272)
T ss_dssp -SCTTTCCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHS--TT-------------------------------
T ss_pred -cCchhHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--cc-------------------------------
Confidence 211222 26677777 899999999999999887742 22
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+...|.. +-..|.+.|++++|.+.|++..... +.+..+|..+-..+...+++++|.+.|++..+.. +.+...|..+-
T Consensus 107 ~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~ 183 (272)
T 3u4t_A 107 RLDMYGQ-IGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRA 183 (272)
T ss_dssp CTHHHHH-HHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 1223445 7788999999999999999988762 4456677777734445669999999999988762 22356777777
Q ss_pred HHHHhcCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGD---VDKACSVEEHMLEHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~---~~~A~~l~~~M~~~g-v~pd------~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+...|+ .++|...+++..+.. -.|+ ...|..|-..|.+.|+.++|...|++..+.
T Consensus 184 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888888 888998888876542 1233 257788888899999999999999999876
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-06 Score=78.91 Aligned_cols=156 Identities=16% Similarity=0.048 Sum_probs=126.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|+++.+. .|+ +...+.. +...|...|++++|.+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~--~~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDA--DAF-------------------------------DVDVALH-LGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCT--TSC-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--Ccc-------------------------------ChHHHHH-HHHHHHHcCCHHHHHH
Confidence 77888999999888765432 111 2233444 7788889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (732)
.++++.... +.+...|..+...+...|++++|.+.++++... .+.+...+..+...+...|+.++|.+.+++..+..
T Consensus 64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 999988763 456788999999999999999999999998876 33467788888889999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+...+..+...+...|+.++|...+++..+.
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345788889999999999999999999987654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=89.06 Aligned_cols=274 Identities=11% Similarity=-0.038 Sum_probs=187.4
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~--~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (732)
.....++.++|...|++..+.. |+ .|. ...|..+-..+...|++++|++.|++.... +-.|. ..++..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4557789999999999987652 11 121 367888899999999999999999987632 22222 445666
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCC----------
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (732)
+-..|. ..|++++|...+... .++....+-. ...+|..+-.. +...|+
T Consensus 89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence 666666 789999999988511 1111110111 12246666666 777788
Q ss_pred ----------hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCH
Q 004743 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (732)
Q Consensus 300 ----------~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (732)
+++|...+++....--. .+-.|. ...+.. +-..|...|++
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~-l~~~~~~~~~~ 199 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTA----------------------------LGDRAAQGRAFGN-LGNTHYLLGNF 199 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHH-HHHHHHHHTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh----------------------------cCCHHHHHHHHHH-HHHHHHHhCCH
Confidence 88888888765432000 000011 123444 67888899999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCh
Q 004743 369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 369 ~~A~~lf~~M~~~----gi~-pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
++|.+.+++.... +.. ....++..+...+...|++++|...+++.... +-.+. ..++..+-..|...|+.
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 9999999987642 111 11347888999999999999999999887643 11111 56777888899999999
Q ss_pred HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 439 ~~A~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++|...+++..+. +-. ....++..+-..|.+.|++++|...+++..+.
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999887643 111 11446778889999999999999999988764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-05 Score=85.21 Aligned_cols=228 Identities=8% Similarity=-0.041 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCC-hhhHHHHhhhccccchhhc
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~-~~~A~~~~~~~~~~s~em~ 270 (732)
..|+.+-..+.+.|++++|++.|++..... +-+...|+.+-..+. ..|+ +++|+..|. +..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence 456667777889999999999999999753 224667777777777 7786 999999995 333
Q ss_pred ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (732)
.. .-.+...|+.+-.. +...|++++|...|++..+.. |+ +
T Consensus 160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~-------------------------------~ 199 (382)
T 2h6f_A 160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AK-------------------------------N 199 (382)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TT-------------------------------C
T ss_pred HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--cc-------------------------------C
Confidence 32 22355668888777 889999999999999887752 22 2
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCC-hh
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR 423 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~-~g~~~~A-----~~l~~~M~~~g~~pd-~~ 423 (732)
...|+. +-..+.+.|++++|++.|+++.+.. +-+...|+.+-.++.. .|..++| +..+++.... .|+ ..
T Consensus 200 ~~a~~~-lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~ 275 (382)
T 2h6f_A 200 YHAWQH-RQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 275 (382)
T ss_dssp HHHHHH-HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHHHH-HHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence 334445 6777888999999999999999865 3478899999999999 6766777 4777776654 354 56
Q ss_pred hHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHH
Q 004743 424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL 483 (732)
Q Consensus 424 ty~~lI~~~~~~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g---------~~~~A~~l~~~M 483 (732)
.|+.+-..+...| +.++|.+.+.++ ..-..+...+..|...|.+.| ..++|..+++++
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 7888888888888 689999999888 333455678889999998864 358999999998
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-05 Score=88.43 Aligned_cols=127 Identities=9% Similarity=-0.051 Sum_probs=81.2
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
.+.++...|..+|+.+.+. .+-+...|...+..+.+.|++++|..+|+++... .|+...|...+.....
T Consensus 23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~-- 91 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRE-- 91 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH--
Confidence 4568899999999998543 2334578999999999999999999999999865 3787777776653321
Q ss_pred cCCcccCCCCChhhHHH----HhhhccccchhhcccCCCC--Cccccccccccc---cccccccccCChhHHHHHHHHHH
Q 004743 241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSPM---IDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~----~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~---~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
..|+.+.|.+ +|. ......|.. +...|...+... .....+...|+++.|..+|++..
T Consensus 92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 2345555544 553 222222332 223354444330 00000223678888998888877
Q ss_pred H
Q 004743 312 N 312 (732)
Q Consensus 312 ~ 312 (732)
.
T Consensus 158 ~ 158 (530)
T 2ooe_A 158 V 158 (530)
T ss_dssp T
T ss_pred h
Confidence 6
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-05 Score=81.84 Aligned_cols=219 Identities=11% Similarity=-0.029 Sum_probs=162.0
Q ss_pred chHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 004743 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV 231 (732)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~-------k~g~~-------~~A~~lf~~M~~~Gi~p-d~~tyn~ 231 (732)
..|..+|+..... .+-+...|..+...+. +.|++ ++|..+|++.... +.| +...|..
T Consensus 33 ~~a~~~~~~al~~-------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLV-------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHH-------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 4577788887543 1223467777777765 45886 8999999999863 245 4568888
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc-ccccccccccccccccccCChhHHHHHHHHH
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~-tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
+...+. +.|++++|..+|. +.... ...+.. .|..+... +.+.|++++|..+|++.
T Consensus 105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence 888888 7899999999995 44432 112332 68888888 88999999999999988
Q ss_pred HHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 004743 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (732)
Q Consensus 311 ~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (732)
.+.. |+. +. .|.....-.+...|+.++|..+|++..+.. +-+...|
T Consensus 161 ~~~~--p~~--~~-----------------------------~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (308)
T 2ond_A 161 REDA--RTR--HH-----------------------------VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 206 (308)
T ss_dssp HTST--TCC--TH-----------------------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HhcC--CCC--HH-----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 7642 321 11 111201111223699999999999987752 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g-~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..++..+.+.|+.++|..+|++..... +.|+ ...|..++..+.+.|+.+.|..+++++.+.
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999873 5663 568888999999999999999999998865
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.5e-06 Score=90.35 Aligned_cols=273 Identities=10% Similarity=-0.033 Sum_probs=187.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~--~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (732)
.....++..+|...|++..+.. |+ .|. ...|..+-..+...|++++|+..|++.... +-.|. ..++..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4557789999999999987652 11 122 357888889999999999999999987632 22222 345666
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCC----------
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (732)
+-..|. ..|++++|...+... .++....+-. ...+|..+-.. +...|+
T Consensus 93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence 666666 779999999988511 0111110100 12246666666 778888
Q ss_pred ----------hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCH
Q 004743 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (732)
Q Consensus 300 ----------~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (732)
+++|...|.+....-- ..+-.|. ...|+. +-..|...|++
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~ 203 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVT----------------------------ALGDRAAQGRAFGN-LGNTHYLLGNF 203 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHH-HHHHHHHHTBH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH----------------------------hccCcHHHHHHHHH-HHHHHHHccCH
Confidence 8888888876543200 0000011 223445 77888899999
Q ss_pred HHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCh
Q 004743 369 QRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 369 ~~A~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
++|.+.|++.....- .++ ..+|..+...|...|++++|...+++.... +-.+. ..+|..+-..|...|++
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 999999998765210 122 347888999999999999999999987643 21111 56788888999999999
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 439 DKACSVEEHMLEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
++|.+.+++..+..- .++ ..++..+-..|.+.|++++|...+++..+
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988765311 112 55778888889999999999999988654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-05 Score=81.17 Aligned_cols=227 Identities=9% Similarity=-0.051 Sum_probs=166.1
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG--QYHYNVLLYLCS 237 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd--~~tyn~LL~~~~ 237 (732)
....++.++|.+.|++..+.. |+ +...|..+...|.+.|++++|++.|++....+-.|+ ...|..+-..|.
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~--p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKK--YN-----SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTT--CC-----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CC-----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 446789999999999986542 21 224788888899999999999999999997442222 334777777777
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
..|+.++|...|. ...+. ...+...|..+-.. +...|++++|...|++..+. .|
T Consensus 86 ----------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~--~~ 139 (272)
T 3u4t_A 86 ----------KKGQDSLAIQQYQ-------AAVDR-DTTRLDMYGQIGSY------FYNKGNFPLAIQYMEKQIRP--TT 139 (272)
T ss_dssp ----------HTTCHHHHHHHHH-------HHHHH-STTCTHHHHHHHHH------HHHTTCHHHHHHHHGGGCCS--SC
T ss_pred ----------HcccHHHHHHHHH-------HHHhc-CcccHHHHHHHHHH------HHHccCHHHHHHHHHHHhhc--CC
Confidence 7899999999995 33332 22255567888788 99999999999998766543 22
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~ 397 (732)
+ +...|.. +-..+...+++++|.+.|++..+.. +.+...|..+...+
T Consensus 140 ~-------------------------------~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 140 T-------------------------------DPKVFYE-LGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARAN 186 (272)
T ss_dssp C-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred C-------------------------------cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 2 1222333 3313334459999999999998753 33477888888888
Q ss_pred HhcCC---HHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 398 MSMGD---GDMAFDMVKRMKSLG-INPR------LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 398 ~~~g~---~~~A~~l~~~M~~~g-~~pd------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
...|+ .++|...+++..+.. -.|+ ...|..+-..|...|+.++|.+.|+...+..
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888 888999888876542 2233 2577788889999999999999999988653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=94.09 Aligned_cols=274 Identities=11% Similarity=-0.056 Sum_probs=188.8
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKL-GQYHYNV 231 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~--~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~----Gi~p-d~~tyn~ 231 (732)
.....++.++|...|++..+.. |+ .|. ...|..+-..|...|++++|+..|++.... +-.| ....+..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4457789999999999987652 21 121 147888889999999999999999998743 2122 2345666
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCC----------
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~---------- 299 (732)
+-..|. ..|++++|...+... .+.....+-. ...+|+.+-.. +...|+
T Consensus 132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence 666666 789999999988511 0111110111 23346666666 888888
Q ss_pred -------hhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHH
Q 004743 300 -------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRG 371 (732)
Q Consensus 300 -------~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A 371 (732)
+++|...|.+..+..- . .+-.+ ....|.. +-..|...|++++|
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~-------------------------~---~~~~~~~~~~~~~-la~~~~~~g~~~~A 242 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMR-------------------------D---LGDRGAQGRACGN-LGNTYYLLGDFQAA 242 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------------------------H---HTCHHHHHHHHHH-HHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH-------------------------H---cCCHHHHHHHHHH-HHHHHHHcCChHHH
Confidence 8888888876543210 0 00001 1123444 77888999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CChhhHHHHHHHHHhcCChHHH
Q 004743 372 FEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG----IN-PRLRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 372 ~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g----~~-pd~~ty~~lI~~~~~~g~~~~A 441 (732)
.+.|++.....- .++ ..+|..+...|...|++++|...+++..... -. ....+|..+-..|...|+.++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998765311 112 2378889999999999999999998876541 11 1156778888899999999999
Q ss_pred HHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 442 CSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 442 ~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.+++..+. +-. ....+|..+-..|.+.|+.++|...|++..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999987653 111 11347788888999999999999999988765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=7.2e-05 Score=76.08 Aligned_cols=216 Identities=13% Similarity=-0.003 Sum_probs=164.2
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~ 236 (732)
...++.++|.+.|+...+.+ +...+..+-..|.. .+++++|+..|++..+.+ +...+..|-..|
T Consensus 17 ~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 17 YKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 35678899999999886521 23677778888899 999999999999999887 677777777777
Q ss_pred HhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccc----cCChhHHHHHHHHHHH
Q 004743 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKEN 312 (732)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~ 312 (732)
.... ...++.++|...|. ...+. + +...+..|-.. +.. .+++++|...|++..+
T Consensus 85 ~~g~------~~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 85 YSGQ------GVSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHTS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHHH
T ss_pred hCCC------CcccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHHh
Confidence 7210 02789999999995 33332 2 34445555555 666 8999999999998877
Q ss_pred cCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHh----ccCHHHHHHHHHHHHhCCCCCCHH
Q 004743 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEA 388 (732)
Q Consensus 313 ~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~ 388 (732)
.+ +... +.. +-..|.+ .+++++|.+.|++..+.+ +..
T Consensus 143 ~~---~~~a--------------------------------~~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~ 183 (273)
T 1ouv_A 143 LN---DGDG--------------------------------CTI-LGSLYDAGRGTPKDLKKALASYDKACDLK---DSP 183 (273)
T ss_dssp TT---CHHH--------------------------------HHH-HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred cC---cHHH--------------------------------HHH-HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 64 1111 122 4445555 889999999999998875 567
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 004743 389 SLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 389 ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~g 452 (732)
.+..|-..|.. .++.++|...|++..+.+- ...+..+-..|.+ .++.++|.+.|+...+.|
T Consensus 184 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88889999999 9999999999999888742 5566777778888 899999999999988765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00015 Score=81.83 Aligned_cols=271 Identities=10% Similarity=0.029 Sum_probs=180.3
Q ss_pred hcCCchHHHHHHHHhh--cCCCCCCC-CCCc--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCC
Q 004743 163 RTNDSGQYKVRGITDE--KGSKKSKK-DRSE--------QFQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIK 223 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~--~g~~~~~~-~~p~--------~~tyn~lI~a~~k~----g~~----~~A~~lf~~M~~~Gi~ 223 (732)
.++...|..++.++.. .++..... ++|+ ...|...|...-.. ++. .+|..+|++.... .+
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p 269 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LG 269 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HT
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CC
Confidence 3455667777766432 12332211 2343 35777776554432 233 4788899998865 23
Q ss_pred CCHHHHHHHHHHHHhcccCCcccCCCCChh-------hHHHHhhhccccchhhcccCCCC-Ccccccccccccccccccc
Q 004743 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESN 295 (732)
Q Consensus 224 pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~-------~A~~~~~~~~~~s~em~~~~g~~-d~~tyn~LI~~~~~~~~~~ 295 (732)
-+...|..+...+..... .-...|+++ +|..+|. ..... -.+ +...|..+... +.
T Consensus 270 ~~~~~w~~~~~~~~~~~~---~~~~~g~~~~a~~~~~~A~~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~ 332 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAANIYE-------RAIST-LLKKNMLLYFAYADY------EE 332 (530)
T ss_dssp TCHHHHHHHHHHHHHHHH---HHHTTTCCHHHHHHHHHHHHHHH-------HHTTT-TCSSCHHHHHHHHHH------HH
T ss_pred CCHHHHHHHHHHHHHhch---hhhhccchhhhhhhhHHHHHHHH-------HHHHH-hCcccHHHHHHHHHH------HH
Confidence 456777777777662100 000157776 8888885 33321 122 44558788788 88
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHH
Q 004743 296 SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY 375 (732)
Q Consensus 296 ~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf 375 (732)
+.|++++|..+|++..+. .|+..+ ..|.. ....+.+.|++++|.++|
T Consensus 333 ~~g~~~~A~~~~~~al~~--~p~~~~------------------------------~~~~~-~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAI--EDIDPT------------------------------LVYIQ-YMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HTTCHHHHHHHHHHHHHS--SSSCHH------------------------------HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhCc--cccCch------------------------------HHHHH-HHHHHHHhcCHHHHHHHH
Confidence 899999999999988774 343211 13445 667777889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 004743 376 EKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-V 453 (732)
Q Consensus 376 ~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v 453 (732)
++..+.. +.+...|-..... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|+.....+ .
T Consensus 380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9988753 2222333322222 346899999999999877652 2247788899999999999999999999998864 2
Q ss_pred CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 454 YPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 454 ~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+ ...|...+......|+.+.+..++.++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333 558888898889999999999999998776
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=2e-05 Score=80.96 Aligned_cols=241 Identities=11% Similarity=0.004 Sum_probs=152.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYN 230 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~-~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn 230 (732)
.....++.++|..+|++..+...... ...+.....|..+-..|...|++++|+.+|++.... +-.| ...++.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34577899999999999865311110 011223467888999999999999999999998854 2223 356677
Q ss_pred HHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc------CCCC-CccccccccccccccccccccCChhHH
Q 004743 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (732)
Q Consensus 231 ~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~------~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (732)
.+-..|. ..|++++|...+. +.... ..-. ....|..+-.. +...|++++|
T Consensus 116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A 172 (311)
T 3nf1_A 116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV 172 (311)
T ss_dssp HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence 7777787 8899999999995 22221 0111 34447777777 9999999999
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhC-
Q 004743 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD- 381 (732)
Q Consensus 304 ~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~- 381 (732)
..+|++....-. .. ..+-.|+ ...+.. +...|.+.|++++|.+.|++....
T Consensus 173 ~~~~~~a~~~~~-------------------------~~-~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 173 EYYYQRALEIYQ-------------------------TK-LGPDDPNVAKTKNN-LASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHHH-------------------------HT-SCTTCHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------------------HH-hCCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999998865310 00 0001122 335555 888999999999999999998853
Q ss_pred ------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 382 ------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 382 ------gi~pd-------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
...+. ...+..+...+...+.+.+|...+...... -..+..+|..+-..|.+.|+.++|.+.|++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11121 122333333444455555666666655433 2234577888999999999999999999887
Q ss_pred HH
Q 004743 449 LE 450 (732)
Q Consensus 449 ~~ 450 (732)
.+
T Consensus 305 l~ 306 (311)
T 3nf1_A 305 MR 306 (311)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-05 Score=91.84 Aligned_cols=249 Identities=10% Similarity=0.098 Sum_probs=174.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
+...+..++|..+|+.-. .++ ...+.++. ..+++++|.++.++.. +..+|..+=.++.
T Consensus 1059 ai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql-- 1116 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL-- 1116 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH--
Confidence 446778889999998861 111 33455544 6678999999888552 3678888888888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|++++|++.|. .-.|.-.|.-++.+ +.+.|++++|.+.|..-.+.. ++.
T Consensus 1117 --------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1117 --------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred --------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--ccc
Confidence 8899999999994 11244557778888 999999999999997544433 443
Q ss_pred cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004743 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (732)
Q Consensus 320 ~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (732)
...+ .+..+|+... -+.++..-=-.|+...|.. +=..|...|++++|..+|... ..|..+...|++
T Consensus 1168 ~Idt--~LafaYAKl~--rleele~fI~~~n~ad~~~-iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1168 YVET--ELIFALAKTN--RLAELEEFINGPNNAHIQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred cccH--HHHHHHHhhc--CHHHHHHHHhCCCHHHHHH-HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 2222 2333333221 0111111111345555666 667888889999999999884 379999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 004743 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (732)
.|++++|.+.+++- -+..+|.-+-.+|...|++..|...... +..+...+..++..|-+.|.+++|..+
T Consensus 1234 Lge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred hCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998754 3567888888888888888888776553 345666777889999999999999999
Q ss_pred HHHHH
Q 004743 480 LHKLR 484 (732)
Q Consensus 480 ~~~M~ 484 (732)
++.-.
T Consensus 1303 lE~aL 1307 (1630)
T 1xi4_A 1303 LEAAL 1307 (1630)
T ss_pred HHHHh
Confidence 86543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.22 E-value=9.6e-06 Score=81.85 Aligned_cols=234 Identities=8% Similarity=-0.059 Sum_probs=131.9
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc--
Q 004743 202 SKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-- 272 (732)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~-- 272 (732)
...|++++|+.+|++..+. .-+....++..+-..|. ..|++++|...+. +....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~al~~~~ 74 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKEAAHLLN-------DALAIRE 74 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHHHH
Confidence 3456666666666665531 11223456666666777 6788888888885 22211
Q ss_pred ----CCCC-CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCC
Q 004743 273 ----RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (732)
Q Consensus 273 ----~g~~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~ 347 (732)
..-+ ...+|+.+-.. +...|++++|...|.+.....- .... .-
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~-------------------------~~~~-~~ 122 (283)
T 3edt_B 75 KTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIRE-------------------------KVLG-KF 122 (283)
T ss_dssp HHTCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHH-------------------------HHHC-TT
T ss_pred HHcCCcchHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHH-------------------------HHcC-CC
Confidence 0111 33346666666 7788888888888877654310 0000 00
Q ss_pred CC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 004743 348 SI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--- 416 (732)
Q Consensus 348 ~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--- 416 (732)
.| ....|.. +-..|...|++++|.+.|++.... +-.| ...++..+...|...|++++|..++++..+.
T Consensus 123 ~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNN-LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 2334555 667777888888888888877654 1122 3456777778888888888888888777653
Q ss_pred ----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH---C-C-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 417 ----GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE---H-G-V-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 417 ----g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~---~-g-v-~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...+....+...+..+...+........+..+.. . + . .....+|..|-..|.+.|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233333333333333333222221111211111 1 1 1 11234677888899999999999999988654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=81.02 Aligned_cols=239 Identities=10% Similarity=-0.029 Sum_probs=147.4
Q ss_pred hhcCCchHHHHHHHHhhcCCCCC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYNVLL 233 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~-~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn~LL 233 (732)
..++..+|...|++..+.-.+.. ...+....+|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44566677777766544211100 111224568889999999999999999999998854 2223 355777777
Q ss_pred HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc----CCC--C-CccccccccccccccccccccCChhHHHHH
Q 004743 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS----RDM--D-NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (732)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~----~g~--~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (732)
..|. ..|++++|...+. +.... .+- + ....|..+-.. +...|++++|..+
T Consensus 93 ~~~~----------~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~ 149 (283)
T 3edt_B 93 VLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKFHPDVAKQLNNLALL------CQNQGKAEEVEYY 149 (283)
T ss_dssp HHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHH
T ss_pred HHHH----------HhccHHHHHHHHH-------HHHHHHHHHcCCCChHHHHHHHHHHHH------HHHcCCHHHHHHH
Confidence 7888 8899999999985 22211 011 1 34447777777 9999999999999
Q ss_pred HHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----
Q 004743 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---- 381 (732)
Q Consensus 307 f~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---- 381 (732)
|++..+.-. ... .+-.| ....+.. +-..|.+.|++++|.++|++....
T Consensus 150 ~~~al~~~~-------------------------~~~-~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 150 YRRALEIYA-------------------------TRL-GPDDPNVAKTKNN-LASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHHHHH-------------------------HHS-CTTCHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------Hhc-CCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 998765300 000 00012 2345666 788999999999999999988753
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH---HHcC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 382 ---EVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRM---KSLG-I-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 382 ---gi~pd~-~ty~~LI~~~~~~g~~~~A~~l~~~M---~~~g-~-~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...+.. ..|..+...+...+....+..+.... ...+ . .....+|..+-..|...|+.++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122222 23333333333333322222211111 1111 1 12245788888999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.18 E-value=9.5e-05 Score=69.15 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=119.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...+++..+.. +.+...|..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 6678889999999999999987653 4578889999999999999999999999988762 3457788888999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-hhHHHH-HHHHHhchHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~-p~t~~~-I~~~~~~~~~~~a~ 511 (732)
+++|.+.++++.+.. ..+...+..+...|...|+.++|..++++.... .+. +..+.. ...+...+...++.
T Consensus 92 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 92 YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999998764 456788888999999999999999999998876 333 334433 44455555544443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.18 E-value=9e-05 Score=70.33 Aligned_cols=163 Identities=12% Similarity=0.035 Sum_probs=128.6
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|..|=.. +...|++++|...|++..+. .|+ +...|.. +-.
T Consensus 8 y~~lG~~------~~~~g~~~~A~~~~~~al~~--~p~-------------------------------~~~~~~~-la~ 47 (184)
T 3vtx_A 8 YMDIGDK------KRTKGDFDGAIRAYKKVLKA--DPN-------------------------------NVETLLK-LGK 47 (184)
T ss_dssp HHHHHHH------HHHHTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHH-HHH
T ss_pred HHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCC-------------------------------CHHHHHH-HHH
Confidence 5555455 88899999999999987764 233 2223344 777
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.|.+.|++++|.+.+....... +-+...+..+-..+...++.+.|...+.+..... +-+...+..+-..|.+.|++++
T Consensus 48 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 48 TYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchh
Confidence 8889999999999999887754 3456777888888899999999999998877652 2356778888888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|.+.|++..+.. .-+...|..+-.+|.+.|+.++|...|++..+.
T Consensus 126 A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 126 AIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999988764 345678888999999999999999999987664
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=82.48 Aligned_cols=245 Identities=11% Similarity=0.045 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
..+...-..+.+.|++++|+.+|+++.+.. +.+ ...|..+-..|. ..|++++|...+... .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l 70 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----L 70 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----H
Confidence 344555667889999999999999999763 223 356667777777 789999999998511 0
Q ss_pred hhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCC-CCCccccchhhhhhccccccCCCchhhhc
Q 004743 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (732)
Q Consensus 268 em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi-~Pd~~ty~~~~li~~~~~~a~~~~~~m~~ 344 (732)
++....+-. ....|..+-.. +...|++++|...|.+..+..- .++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------- 121 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG----------------------- 121 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------------------
T ss_pred HHhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCchH-----------------------
Confidence 111111111 23446667677 8899999999999988755310 001000
Q ss_pred cCCCCChhhhHHHHHHHHHhccC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHh
Q 004743 345 KDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMS 399 (732)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~ 399 (732)
...++.. +-..|...|+ +++|.+.+++.... +-.| ...+|..+...+..
T Consensus 122 -----~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 122 -----EARALYN-LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp -----HHHHHHH-HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHH-HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0123334 6677777888 89999888876532 2111 23578888899999
Q ss_pred cCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 004743 400 MGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVE 469 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~ 469 (732)
.|++++|.+.+++..+. +..+ ...+|..+...|...|+.++|.+.+++..+..- .++ ..++..+-..|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999987643 1111 134788888899999999999999988764311 112 5577888889999
Q ss_pred cCChHHHHHHHHHHHhc
Q 004743 470 AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 470 ~g~~~~A~~l~~~M~~~ 486 (732)
.|++++|...+++....
T Consensus 276 ~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999887553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=86.24 Aligned_cols=245 Identities=12% Similarity=0.026 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccch
Q 004743 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (732)
Q Consensus 192 ~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~ 267 (732)
..+..+-..+...|++++|+.+|+++.+.+- .+. ..|..+-..|. ..|++++|...+... -
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence 4455566788899999999999999998632 233 45666666676 678999999988511 1
Q ss_pred hhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc
Q 004743 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (732)
Q Consensus 268 em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~ 345 (732)
++....+-. ....|..+-.. +...|++++|...|++..+..-. .
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~----------------------------~ 159 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQ----------------------------L 159 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------H
T ss_pred HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHH----------------------------h
Confidence 111111111 33446677777 89999999999999887653100 0
Q ss_pred CCCC-ChhhhHHHHHHHHHhccC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 004743 346 DWSI-DNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGD 402 (732)
Q Consensus 346 g~~p-d~~tyn~~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~ 402 (732)
+-.| ....|+. +-..|...|+ +++|.+.+++.... +-.| ...+|..+-..|...|+
T Consensus 160 ~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 160 GDRLSEGRALYN-LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp TCHHHHHHHHHH-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hchHHHHHHHHH-HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 0001 1223444 6678888888 99999988876532 2112 23578888999999999
Q ss_pred HHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCC
Q 004743 403 GDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGK 472 (732)
Q Consensus 403 ~~~A~~l~~~M~~~g~-~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv----~-pd~~ty~~Li~~~~~~g~ 472 (732)
+++|...+++..+..- .++ ..+|..+-..|...|++++|.+.+++..+..- . ....++..+-..|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765411 011 23788888999999999999999988765321 1 114677888889999999
Q ss_pred hHHHHHHHHHHHhc
Q 004743 473 GDRVYYLLHKLRTS 486 (732)
Q Consensus 473 ~~~A~~l~~~M~~~ 486 (732)
.++|..+|++....
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=84.15 Aligned_cols=249 Identities=11% Similarity=0.008 Sum_probs=172.3
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhcc
Q 004743 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (732)
Q Consensus 188 ~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~ 263 (732)
.+....+...=..+.+.|++++|+.+|+++.+.+ +.+ ...|..+-..|. ..|++++|...+...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a- 73 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD- 73 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH-
Confidence 3445667777788899999999999999999763 223 345666667777 779999999988511
Q ss_pred ccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCC-CCccccchhhhhhccccccCCCch
Q 004743 264 MNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDD 340 (732)
Q Consensus 264 ~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~-Pd~~ty~~~~li~~~~~~a~~~~~ 340 (732)
.++....+-. ....|..+-.. +...|++++|...|++..+..-. ++...
T Consensus 74 ---l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------- 125 (406)
T 3sf4_A 74 ---LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG------------------- 125 (406)
T ss_dssp ---HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------
T ss_pred ---HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccc-------------------
Confidence 0111111111 23346666667 88999999999999877653100 00000
Q ss_pred hhhccCCCCChhhhHHHHHHHHHhccC--------------------HHHHHHHHHHHHh----CCCCC-CHHHHHHHHH
Q 004743 341 QSRKKDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCL----DEVPM-NEASLTAVGR 395 (732)
Q Consensus 341 ~m~~~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~ 395 (732)
...++.. +-..|...|+ +++|.+.+++... .+-.| ...+|..+-.
T Consensus 126 ---------~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 195 (406)
T 3sf4_A 126 ---------EARALYN-LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN 195 (406)
T ss_dssp ---------HHHHHHH-HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------hHHHHHH-HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 0123344 6677788888 8999988887553 22122 2357888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 004743 396 MAMSMGDGDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE-EPELEALLR 465 (732)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd-~~ty~~Li~ 465 (732)
.|...|++++|...+++..+..- .++ ..+|..+-..|...|+.++|...+++..+. +-.+. ..++..+-.
T Consensus 196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 275 (406)
T ss_dssp HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence 99999999999999998764310 112 347888888999999999999999887643 21111 557788888
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|...|++++|...+++....
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHH
Confidence 999999999999999887553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.5e-05 Score=68.74 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=101.0
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|..+|+++.+.. |+ +...|.. +...+...|++++|..
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~-~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD--PR-------------------------------SAEAWYN-LGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC--Cc-------------------------------chhHHHH-HHHHHHHhcCHHHHHH
Confidence 778899999999999987653 21 1223334 6778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
+|+++...+ +.+...|..+...+...|++++|.++++++.... +.+...+..+...+.+.|+.++|...++++.+.
T Consensus 57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999998764 4567889999999999999999999999988763 345778888999999999999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-05 Score=86.71 Aligned_cols=213 Identities=4% Similarity=-0.145 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCCh-hhHHHHhhhccccchhhcccCCCCCcccccccc
Q 004743 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS 285 (732)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~-~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI 285 (732)
+++|++.+++..... +.+...+..+=..|. ..|++ ++|+..|. +..+. .-.+...|..+-
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~lg 144 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHHH
Confidence 566777777655322 235667777767777 78999 99999995 33332 222455688888
Q ss_pred ccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhc
Q 004743 286 SPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK 365 (732)
Q Consensus 286 ~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~ 365 (732)
.. |...|++++|...|++..+.. |+... |.. +-..|...
T Consensus 145 ~~------~~~~g~~~~A~~~~~~al~~~--p~~~~--------------------------------~~~-lg~~~~~~ 183 (474)
T 4abn_A 145 EV------YWKKGDVTSAHTCFSGALTHC--KNKVS--------------------------------LQN-LSMVLRQL 183 (474)
T ss_dssp HH------HHHHTCHHHHHHHHHHHHTTC--CCHHH--------------------------------HHH-HHHHHTTC
T ss_pred HH------HHHcCCHHHHHHHHHHHHhhC--CCHHH--------------------------------HHH-HHHHHHHh
Confidence 88 999999999999999887653 55322 223 55666677
Q ss_pred ---------cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCC----Chhh
Q 004743 366 ---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLRS 424 (732)
Q Consensus 366 ---------g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~p----d~~t 424 (732)
|++++|.+.|++..+.. +-+...|..+-.+|... |++++|.+.|++..+. .| +...
T Consensus 184 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 260 (474)
T 4abn_A 184 QTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDL 260 (474)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHH
T ss_pred ccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHH
Confidence 99999999999988764 34678899999999998 9999999999998875 35 6788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
|..+-..|...|++++|.+.|++..+.. .-+...+..+-..+...|+.++|...+.++
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999988754 234557888888888999999998766544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00015 Score=78.52 Aligned_cols=238 Identities=9% Similarity=-0.028 Sum_probs=173.1
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~-~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (732)
.+.+.++.++|.+.|+...+.. +-+...|+.+-..+.+.|+ +++|+..|++..... +-+...|+.+-.++.
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhC-------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 4557789999999999986531 2235788889999999996 999999999999754 225677888777777
Q ss_pred hcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCC
Q 004743 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (732)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~P 317 (732)
+.|++++|+..|. ..... .-.+...|..+-.+ +...|++++|...|+++.+.. |
T Consensus 178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence 7789999999995 44432 33366668888778 889999999999999998763 2
Q ss_pred CccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHh-ccCHHHH-----HHHHHHHHhCCCCCCHHHHH
Q 004743 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASLT 391 (732)
Q Consensus 318 d~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k-~g~~~~A-----~~lf~~M~~~gi~pd~~ty~ 391 (732)
+ +...|+. +-..|.+ .|..++| ++.|++..... +-+...|+
T Consensus 232 ~-------------------------------~~~a~~~-lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~ 278 (382)
T 2h6f_A 232 R-------------------------------NNSVWNQ-RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWN 278 (382)
T ss_dssp T-------------------------------CHHHHHH-HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred C-------------------------------CHHHHHH-HHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 2 2233444 5555666 5655666 57788777643 33678899
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---------ChHHHHHHHHHH-HHCCCCCCH-H
Q 004743 392 AVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPEE-P 458 (732)
Q Consensus 392 ~LI~~~~~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g---------~~~~A~~l~~~M-~~~gv~pd~-~ 458 (732)
.+-..+...| +.++|.+.+.++ ..-..+...+..+...|.+.| ..++|.++++++ .+. .|.. .
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHH
Confidence 9999999988 689999999887 323345677888888898874 358999999998 433 3443 3
Q ss_pred HHHHHHHHH
Q 004743 459 ELEALLRVS 467 (732)
Q Consensus 459 ty~~Li~~~ 467 (732)
-|..+...+
T Consensus 355 ~w~~~~~~l 363 (382)
T 2h6f_A 355 YWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0023 Score=71.12 Aligned_cols=274 Identities=10% Similarity=-0.007 Sum_probs=157.8
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.++..+|.+.|+...+.| +...+..|=..|.. .+++++|+..|+...+.| +...+..|-..|..
T Consensus 92 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFE 159 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 345556666666654432 11344445455555 566666666666666555 34444444444442
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccc----cCChhHHHHHHHHHHHcC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~g 314 (732)
.. + -.++.++|...|. ...+. | +...+..|-.. |.. .++.++|...|.+-.+.|
T Consensus 160 g~-g-----~~~d~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 160 GD-G-----VTRDYVMAREWYS-------KAAEQ-G--NVWSCNQLGYM------YSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp TS-S-----SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CC-C-----CCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 10 0 1455666666663 22221 1 22223333222 332 566666666666655543
Q ss_pred CCCCccccc-hhhh-hhc-----cccccCCCchhhhccCCCCChhhhHHHHHHHHHh----ccCHHHHHHHHHHHHhCCC
Q 004743 315 QFSNGHMKL-NSQL-LDG-----RSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 315 i~Pd~~ty~-~~~l-i~~-----~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi 383 (732)
. ...+. .+.+ ..+ -...|...+......| +...+.. +-..|.. .++.++|.+.|++..+.|
T Consensus 218 ~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~-lg~~y~~g~~~~~d~~~A~~~~~~a~~~~- 289 (490)
T 2xm6_A 218 D---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR-LGYILEQGLAGAKEPLKALEWYRKSAEQG- 289 (490)
T ss_dssp C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH-HHHHHHHTTTSSCCHHHHHHHHHHHHTTT-
T ss_pred C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHcC-
Confidence 1 11111 0011 000 0122222333333222 2222223 3334444 788999999999988775
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC
Q 004743 384 PMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYP 455 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g---~~~~A~~l~~~M~~~gv~p 455 (732)
+...+..|-..|... ++.++|...|++..+.| +...+..+-..|...| +.++|.+.|+...+.|
T Consensus 290 --~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--- 361 (490)
T 2xm6_A 290 --NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--- 361 (490)
T ss_dssp --CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---
Confidence 456777777888777 89999999999888775 3445555666666656 7889999999988875
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 456 EEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 456 d~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
+...+..|-..|.. .++.++|...|++..+.
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 66777777777877 78999999999998876
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0018 Score=71.97 Aligned_cols=278 Identities=12% Similarity=0.077 Sum_probs=186.6
Q ss_pred hcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
.++..+|.+.|+...+.| +...+..|-..|.. .++.++|++.|++..+.| +...+..|-..|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSR 195 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc
Confidence 467778888888875543 12556666666766 778888888888888765 56666666666662
Q ss_pred cccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccccccccccccccc----ccCChhHHHHHHHHHHHcC
Q 004743 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESN----SSYRFDDLDSTFNEKENLG 314 (732)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~----~~g~~~~A~~lf~eM~~~g 314 (732)
.. + ..++.++|...|. ...+. | +...+..|-.. +. ..+++++|..+|++..+.|
T Consensus 196 g~-g-----~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 196 GL-G-----VERNDAISAQWYR-------KSATS-G--DELGQLHLADM------YYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TS-S-----SCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC-C-----CCcCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH------HHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 11 0 2577888888874 22222 2 33333333333 33 3677888888888777664
Q ss_pred CCCCccccchhhhh-hcc-----ccccCCCchhhhccCCCCChhhhHHHHHHHHHhc-----cCHHHHHHHHHHHHhCCC
Q 004743 315 QFSNGHMKLNSQLL-DGR-----SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEV 383 (732)
Q Consensus 315 i~Pd~~ty~~~~li-~~~-----~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi 383 (732)
..+ ..++.+.+. .|. ...|...+......| +...+.. |-..|... ++.++|.+.|++..+.|
T Consensus 254 ~~~--a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~-Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~- 326 (490)
T 2xm6_A 254 NSI--AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYY-LAHLYDKGAEGVAKNREQAISWYTKSAEQG- 326 (490)
T ss_dssp CHH--HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHH-HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-
T ss_pred CHH--HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHH-HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-
Confidence 211 111111111 111 123333444444332 2333444 55556665 89999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCC
Q 004743 384 PMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPE 456 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g---~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd 456 (732)
+...+..|-..|...| +.++|.+.|++..+.| +...+..|=..|.. .++.++|.+.|+...+.| +
T Consensus 327 --~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~ 398 (490)
T 2xm6_A 327 --DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---L 398 (490)
T ss_dssp --CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred --CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---C
Confidence 5567777888888766 7899999999988874 56677777777888 799999999999999876 5
Q ss_pred HHHHHHHHHHHHh----cCChHHHHHHHHHHHhccCCCC
Q 004743 457 EPELEALLRVSVE----AGKGDRVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 457 ~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~~~~~~ 491 (732)
...+..|-..|.+ .++.++|...|++..+. ++.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~ 435 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN--DMN 435 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH--HCC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCC
Confidence 6777778888877 89999999999999887 544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00068 Score=64.12 Aligned_cols=156 Identities=14% Similarity=0.046 Sum_probs=121.8
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI 429 (732)
+...|.. +=..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+....... .-+...+..+-
T Consensus 4 ~~~iy~~-lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMD-IGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 3455666 7788999999999999999988754 3467889999999999999999999999987663 23456667777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHH-HHHHHhchHH
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEA 507 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t~~~-I~~~~~~~~~ 507 (732)
..+...++.+.|.+.+....... .-+...+..+-..|.+.|++++|...|++..+. .|.. ..+.. -..+.+.+..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 78889999999999999987654 345778888889999999999999999998876 3332 34433 4445555555
Q ss_pred HHhc
Q 004743 508 ARLG 511 (732)
Q Consensus 508 ~~a~ 511 (732)
.+|.
T Consensus 158 ~~A~ 161 (184)
T 3vtx_A 158 DEAV 161 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.98 E-value=8.5e-05 Score=79.80 Aligned_cols=236 Identities=9% Similarity=0.045 Sum_probs=160.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 198 LDMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 198 I~a~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
=..+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.++|...+... -++...
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~ 175 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKE 175 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHh
Confidence 345678899999999999998531 1133 345666666666 778899888888511 111111
Q ss_pred CCC-C--CccccccccccccccccccccCChhHHHHHHHHHHHcCCC-CCccccchhhhhhccccccCCCchhhhccCCC
Q 004743 273 RDM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (732)
Q Consensus 273 ~g~-~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~-Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~ 348 (732)
.+- . ...+++.+-.. +...|++++|...|++..+..-. +|...
T Consensus 176 ~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------- 222 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQPQL--------------------------- 222 (383)
T ss_dssp CSTTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------
T ss_pred CccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCChHH---------------------------
Confidence 111 1 22346666666 88999999999999877643100 11000
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC
Q 004743 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GIN 419 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~ 419 (732)
...+|+. +-..|...|++++|.+.|++.... +. +....++..+-..|.+.|++++|...+++..+. +-.
T Consensus 223 -~~~~~~~-lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 300 (383)
T 3ulq_A 223 -MGRTLYN-IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300 (383)
T ss_dssp -HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 1124445 778889999999999999987762 33 334678999999999999999999999887643 222
Q ss_pred CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 420 PRLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 420 pd~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.....+..+-..|...|+ +++|..+++.. +..|+ ...+..|-..|.+.|+.++|...|++...
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223345667777778888 77777777765 33333 33566788889999999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00092 Score=71.07 Aligned_cols=272 Identities=9% Similarity=-0.019 Sum_probs=172.1
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHH
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQ----YHYNVLL 233 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p--~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi-~pd~----~tyn~LL 233 (732)
...++.++|...+++..... +.. .+ -...++.+-..+...|++++|.+.+++.....- .++. .++..+-
T Consensus 25 ~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 35688899999999865432 111 11 113566677788899999999999999874210 1222 2234444
Q ss_pred HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC----CccccccccccccccccccccCChhHHHHHHHH
Q 004743 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (732)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (732)
..+. ..|++++|...+... -+.....+-. ....++.+-.. +...|++++|...+++
T Consensus 101 ~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 101 EILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARS 160 (373)
T ss_dssp HHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHHH
Confidence 4455 679999999988511 0111111111 12234555556 7889999999999988
Q ss_pred HHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC--H
Q 004743 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--E 387 (732)
Q Consensus 310 M~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~ 387 (732)
.....-...... ....|.. +-..+...|++++|...+++.....-.++ .
T Consensus 161 al~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 211 (373)
T 1hz4_A 161 GIEVLSSYQPQQ----------------------------QLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211 (373)
T ss_dssp HHHHTTTSCGGG----------------------------GHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHhhccCcHH----------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccCcch
Confidence 765421110000 1123334 66778889999999999998765311111 1
Q ss_pred HHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC
Q 004743 388 ASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE 456 (732)
Q Consensus 388 ~ty~----~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd 456 (732)
.... .++..+...|+.++|...+++.......+. ...+..+...+...|+.++|.+.+++.... |..++
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 291 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 291 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh
Confidence 1111 233457799999999999988654322111 224567778899999999999999887543 32223
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 457 EP-ELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 457 ~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.. .+..+-.++...|+.++|...|++...
T Consensus 292 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 292 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 32 556667778899999999999987654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0013 Score=69.99 Aligned_cols=239 Identities=14% Similarity=-0.011 Sum_probs=154.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 199 ~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~----tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
..+...|++++|..++++.....-..+.. .++.+-..+. ..|++++|...+... .+.....|
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~ 87 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQHD 87 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhcC
Confidence 45567899999999999988654222332 3344444455 568899999888511 11111111
Q ss_pred CC--CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCC--CC
Q 004743 275 MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS--ID 350 (732)
Q Consensus 275 ~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~--pd 350 (732)
.. -..+++.+-.. +...|++++|...+++.....-. .|-. |.
T Consensus 88 ~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~ 133 (373)
T 1hz4_A 88 VWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINE----------------------------QHLEQLPM 133 (373)
T ss_dssp CHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------TTCTTSTH
T ss_pred cHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHH----------------------------hccccCcH
Confidence 11 11224444455 78899999999999887653100 0000 11
Q ss_pred -hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hh
Q 004743 351 -NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RS 424 (732)
Q Consensus 351 -~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi----~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t 424 (732)
...+.. +-..|...|++++|...+++.....- .....+|..+-..+...|++++|...+++.....-.++. ..
T Consensus 134 ~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~ 212 (373)
T 1hz4_A 134 HEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 212 (373)
T ss_dssp HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchh
Confidence 112333 55678889999999999998765321 112467888889999999999999999988754222221 12
Q ss_pred HH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 425 YG-----PALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 425 y~-----~lI~~~~~~g~~~~A~~l~~~M~~~gv~p---d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+. ..+..+...|+.++|...+++.......+ ....+..+...+...|+.++|..++++....
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 213 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 23344779999999999998876543211 1335677788899999999999999887543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0022 Score=78.47 Aligned_cols=246 Identities=12% Similarity=0.001 Sum_probs=166.4
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~ 241 (732)
..+++++|.++.+... . ..+|..+=.++-+.|++++|++.|... -|...|.-+...|.
T Consensus 1088 ~i~nldrAiE~Aervn------~------p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~---- 1145 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------E------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN---- 1145 (1630)
T ss_pred HHhhHHHHHHHHHhcC------C------HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH----
Confidence 6667888888887651 1 268888889999999999999999664 36777888888888
Q ss_pred CCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccc
Q 004743 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (732)
Q Consensus 242 ~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~t 321 (732)
+.|++++|.+.+. |..+.. ++....+.+.-+ |++.+++++...+.+ .|+...
T Consensus 1146 ------~lGkyEEAIeyL~--------mArk~~-~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n~ad 1197 (1630)
T 1xi4_A 1146 ------TSGNWEELVKYLQ--------MARKKA-RESYVETELIFA------LAKTNRLAELEEFIN-------GPNNAH 1197 (1630)
T ss_pred ------HcCCHHHHHHHHH--------HHHhhc-ccccccHHHHHH------HHhhcCHHHHHHHHh-------CCCHHH
Confidence 8899999999984 322211 232333447777 888888886444321 233333
Q ss_pred cchhhhhhccc-----cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004743 322 KLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (732)
Q Consensus 322 y~~~~li~~~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~ 396 (732)
|. .+-+.+. ..|...+... ..|.. +...|++.|+++.|.+.+++- -|..+|.-+-.+
T Consensus 1198 ~~--~iGd~le~eg~YeeA~~~Y~kA---------~ny~r-LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1198 IQ--QVGDRCYDEKMYDAAKLLYNNV---------SNFGR-LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HH--HHHHHHHhcCCHHHHHHHHHhh---------hHHHH-HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 32 1111111 3333344332 25666 999999999999999999876 366899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChH
Q 004743 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA--GKGD 474 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~--g~~~ 474 (732)
|...|+++.|...... +..+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++. +++.
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 9999999998887653 33455667789999999999999999997665332 22334555555555553 4455
Q ss_pred HHHHHHH
Q 004743 475 RVYYLLH 481 (732)
Q Consensus 475 ~A~~l~~ 481 (732)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 5555554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00057 Score=76.13 Aligned_cols=163 Identities=8% Similarity=-0.095 Sum_probs=134.9
Q ss_pred cccccccccccccccccccCCh-hHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHH
Q 004743 279 GQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (732)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (732)
..|..+-.. +...|++ ++|...|++..+.. |+ +...|..
T Consensus 103 ~~~~~lg~~------~~~~g~~~~~A~~~~~~al~~~--p~-------------------------------~~~a~~~- 142 (474)
T 4abn_A 103 QALMLKGKA------LNVTPDYSPEAEVLLSKAVKLE--PE-------------------------------LVEAWNQ- 142 (474)
T ss_dssp HHHHHHHHH------HTSSSSCCHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH-
T ss_pred HHHHHHHHH------HHhccccHHHHHHHHHHHHhhC--CC-------------------------------CHHHHHH-
Confidence 335555555 8889999 99999999887652 32 1233445
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~---------g~~~~A~~l~~~M~~~g~~pd~~ty~~l 428 (732)
+-..|.+.|++++|.+.|++..+. .|+...|..+-..|... |++++|.+.|++..+.. +-+...|..+
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 219 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 778899999999999999999876 47788999999999999 99999999999988763 2346788888
Q ss_pred HHHHHhc--------CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 429 LSVFCNN--------GDVDKACSVEEHMLEHGVYP----EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 429 I~~~~~~--------g~~~~A~~l~~~M~~~gv~p----d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-.+|... |++++|.+.|+...+. .| +...|..+-.+|...|++++|...|++..+.
T Consensus 220 g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888 9999999999999876 35 7888999999999999999999999998776
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00081 Score=69.48 Aligned_cols=125 Identities=10% Similarity=-0.014 Sum_probs=87.9
Q ss_pred HHHHHHhc-cCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------hH
Q 004743 358 RLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------SY 425 (732)
Q Consensus 358 lI~~~~k~-g~~~~A~~lf~~M~~~----gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~------ty 425 (732)
+-..|... |++++|.+.|++.... +-.+. ..+|+.+-..|...|++++|...|++........... .|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 55677775 9999999999887653 11111 3568889999999999999999999988764332221 46
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHH--hcCChHHHHHHHHHHH
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP------ELEALLRVSV--EAGKGDRVYYLLHKLR 484 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~------ty~~Li~~~~--~~g~~~~A~~l~~~M~ 484 (732)
..+..++...|+.++|...|++..+. .|+.. .+..|+.+|. ..+++++|...|+++.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 67777888999999999999987642 34322 3445566664 4566888888876653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00065 Score=79.77 Aligned_cols=160 Identities=13% Similarity=0.090 Sum_probs=131.2
Q ss_pred cccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHH
Q 004743 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (732)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (732)
|+.|=.. +.+.|++++|...|++-.+. .|+ +...|++ +=.
T Consensus 12 l~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~-------------------------------~~~a~~n-Lg~ 51 (723)
T 4gyw_A 12 LNNLANI------KREQGNIEEAVRLYRKALEV--FPE-------------------------------FAAAHSN-LAS 51 (723)
T ss_dssp HHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSC-------------------------------CHHHHHH-HHH
T ss_pred HHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCC-------------------------------CHHHHHH-HHH
Confidence 4555555 88999999999999987764 233 2234455 778
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~ 439 (732)
.|.+.|++++|.+.|++..+.. +-+...|+.|-.+|...|++++|.+.|++..+. .|+ ...|+.+-..|.+.|+++
T Consensus 52 ~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 8999999999999999988753 235789999999999999999999999988765 354 678899999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+|.+.|++..+.. | +...|..|...|...|++++|.+.+++..+
T Consensus 129 eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 129 EAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999988753 5 467888999999999999999988887644
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.001 Score=57.44 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=46.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+...+.+.|++++|.++|+++.... +.+..++..+...+...|++++|..+++++.... +.+..++..+...|...|+
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 4445555555555555555555432 2234455555555555555555555555554431 1234444445555555555
Q ss_pred hHHHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLE 450 (732)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (732)
+++|...++++.+
T Consensus 93 ~~~A~~~~~~~~~ 105 (125)
T 1na0_A 93 YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00063 Score=72.90 Aligned_cols=234 Identities=9% Similarity=-0.033 Sum_probs=156.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCC
Q 004743 200 MCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g 274 (732)
.+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.+.|...+... -++....+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~ 175 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY----------HMKQTHVSMYHILQA----LDIYQNHP 175 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTST
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH----------HcCCcHHHHHHHHHH----HHHHHhCC
Confidence 4568899999999999988531 1133 345556666666 778888888887411 11111111
Q ss_pred -CC--CccccccccccccccccccccCChhHHHHHHHHHHHcCC-CCCccccchhhhhhccccccCCCchhhhccCCCCC
Q 004743 275 -MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (732)
Q Consensus 275 -~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi-~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (732)
.. ...+++.+-.. +...|++++|...|.+..+..- .++... .
T Consensus 176 ~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------------------~ 221 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGN------YDDFKHYDKALPHLEAALELAMDIQNDRF----------------------------I 221 (378)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------H
T ss_pred CchhhHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------H
Confidence 11 12346666666 8899999999999987654310 001000 1
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCh
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----NPRL 422 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~----~pd~ 422 (732)
..+++. +-..|...|++++|.+.|++.... +.+....++..+-..|.+.|+.++|...+++..+..- ....
T Consensus 222 ~~~~~~-lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 222 AISLLN-IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 123445 667888999999999999988761 2233367889999999999999999999998876522 1123
Q ss_pred hhHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 423 RSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
..++.+-..|...|+ +++|...++. .+..|+. ..+..|-..|.+.|+.++|...|++...
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555556666778 7777777765 3333333 3556788888999999999999988754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0014 Score=63.25 Aligned_cols=128 Identities=11% Similarity=-0.032 Sum_probs=107.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+.+.|++++|.+.|++. +.|+...|..+-..|...|++++|...|++..... +.+...|..+-..|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 556778899999999999876 46789999999999999999999999999988763 3456788888899999999
Q ss_pred hHHHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 438 VDKACSVEEHMLEHGV--------------YPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv--------------~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
.++|.+.|+...+..- .|+ ...|..+-.+|.+.|+.++|...|++..+. .+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 9999999999987531 121 267788888999999999999999998876 4443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0052 Score=60.15 Aligned_cols=131 Identities=9% Similarity=-0.025 Sum_probs=108.2
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPAL 429 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI 429 (732)
...|.. +-..+.+.|++++|.+.|++.....-.++...+..+-.++...|++++|.+.+++..+. .| +...|..+-
T Consensus 7 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKN-EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344445 55678889999999999999988764478888888999999999999999999998865 34 456788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPE-E-------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd-~-------~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|...|+.++|.+.+++..+.. |+ . ..|..+=..+...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999988753 44 3 34666777788999999999999999876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0019 Score=67.09 Aligned_cols=117 Identities=14% Similarity=0.109 Sum_probs=79.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCh-hhHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRL-RSYGP 427 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd~-~ty~~ 427 (732)
+-..|.+ |++++|++.|++.... |-.+ -..+|+.+-..|...|++++|...|++.... +..+.. ..|..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5556666 8899998888876542 2111 1457888888999999999999999887653 222222 35666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHH
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYL 479 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~------~ty~~Li~~~~~~g~~~~A~~l 479 (732)
+...+...|+.++|...|++.. . .|+. .....++.++ ..|+.+.+..+
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7777778899999999999887 3 3421 2344555555 56777666553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0026 Score=62.36 Aligned_cols=142 Identities=10% Similarity=0.015 Sum_probs=109.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++..+..-.++. ..+.. +-..|.+.|++++|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~--------------------------------~~~~~-~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDS--------------------------------VTAYN-CGVCADNIKKYKEAAD 63 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCH--------------------------------HHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCc--------------------------------HHHHH-HHHHHHHhhcHHHHHH
Confidence 77889999999999988776422232 23334 6677889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-h-------hhHHHHHHHHHhcCChHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-L-------RSYGPALSVFCNNGDVDKACSVE 445 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~-------~ty~~lI~~~~~~g~~~~A~~l~ 445 (732)
.|++..... +-+..+|..+-..|...|++++|...+++..+. .|+ . ..|..+=..+...|++++|.+.|
T Consensus 64 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 64 YFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 999988754 235678899999999999999999999998765 244 3 34666667788899999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 004743 446 EHMLEHGVYPE---EPELEALLRVSVEAGKG 473 (732)
Q Consensus 446 ~~M~~~gv~pd---~~ty~~Li~~~~~~g~~ 473 (732)
+...+. .|+ ...|..+-..|...|..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 998865 565 45666777777766665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0062 Score=66.62 Aligned_cols=274 Identities=9% Similarity=-0.040 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C---CCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhc
Q 004743 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G---IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (732)
Q Consensus 191 ~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-----G---i~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~ 262 (732)
...||.|=..+...|+.++|++.|++..+. + -.-...+|+.+-..|. ..|+.++|...+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV 120 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH
Confidence 378999988999999999999999987531 1 1224678988888888 789999998888511
Q ss_pred cccchhhcccC-CC---CCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhc--c--ccc
Q 004743 263 TMNSTELGDSR-DM---DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDG--R--SNL 334 (732)
Q Consensus 263 ~~~s~em~~~~-g~---~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~--~--~~~ 334 (732)
.++.... +. ....+|+.+-.+ ......+++++|...|++..+. .|+...+..+..+-. + ...
T Consensus 121 ----~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 121 ----KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp ----HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCC
T ss_pred ----HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchH
Confidence 1121110 11 111122222112 0022345789999999987765 466543321111111 1 122
Q ss_pred cCC---CchhhhccCCCCC-hhhhHHHHHHHHH----hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004743 335 ERG---PDDQSRKKDWSID-NQDADEIRLSEDA----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (732)
Q Consensus 335 a~~---~~~~m~~~g~~pd-~~tyn~~lI~~~~----k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A 406 (732)
+.. .+..... +.|+ ...+.. +-..+. ..++.++|.+++++..... +.+..++..+-..|...|++++|
T Consensus 191 ~~~al~~~~~al~--l~p~~~~~~~~-l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 191 SQNAIDPLRQAIR--LNPDNQYLKVL-LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCTHHHHHHHHH--HCSSCHHHHHH-HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhh--cCCcchHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 222 2222222 2343 333333 322333 3467889999999877653 45677899999999999999999
Q ss_pred HHHHHHHHHcCCCCC-hhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 407 FDMVKRMKSLGINPR-LRSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 407 ~~l~~~M~~~g~~pd-~~ty~~lI~~~~~-------------------~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
...+++..+. .|+ ..+|..+-..|.. .+..++|...++...+.. ..+...|..+-..
T Consensus 267 ~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 267 IELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 9999998765 354 3444444333322 123566777777766543 2334567778888
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|...|++++|...|++..+. .+.+.
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~--~~~~~ 368 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSK--ELTPV 368 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--CCCHH
T ss_pred HHHhccHHHHHHHHHHHHhc--CCCCh
Confidence 99999999999999998876 55554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0043 Score=67.93 Aligned_cols=300 Identities=9% Similarity=-0.044 Sum_probs=180.0
Q ss_pred hhhcCCchHHHHHHHHhhc--CCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHH
Q 004743 161 EQRTNDSGQYKVRGITDEK--GSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHYNV 231 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~--g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-----G-i~p-d~~tyn~ 231 (732)
...|+.++|.+.|++-.+- ...++...+...++|+.+-..|...|++++|...|++..+- + ..+ ...+|+.
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 4668899999988874331 11222222334578999999999999999999999987632 1 112 2455555
Q ss_pred HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHH
Q 004743 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 232 LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
+-.++... ..++.++|+..|. +..+. ...+...+..+... ...+...++.++|.+.|++-.
T Consensus 142 ~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 142 EGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHHHH
T ss_pred HHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHHHh
Confidence 44444311 2356889999995 32221 11122223222222 001344567778888887766
Q ss_pred HcCCCCCc-cccc-hhhhh-hcc-----ccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 004743 312 NLGQFSNG-HMKL-NSQLL-DGR-----SNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (732)
Q Consensus 312 ~~gi~Pd~-~ty~-~~~li-~~~-----~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (732)
+. .|+. ..+. .+... ... -..|...+.+.... .|+ ...++. +-..|.+.|++++|.+.|++..+..
T Consensus 203 ~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~ 277 (472)
T 4g1t_A 203 RL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRS-AAKFYRRKDEPDKAIELLKKALEYI 277 (472)
T ss_dssp HH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHH-HHHHHHHcCchHHHHHHHHHHHHhC
Confidence 54 2433 2222 00000 000 12333344433322 233 344555 7889999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 004743 383 VPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (732)
Q Consensus 383 i~pd~~ty~~LI~~~~~-------------------~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~ 443 (732)
+-+..+|..+-.+|.. .+..++|...++...... +.+..+|..+-..|...|++++|.+
T Consensus 278 -p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 278 -PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHH
Confidence 3345666666555432 223566777777766542 2346678888899999999999999
Q ss_pred HHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhc
Q 004743 444 VEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 444 l~~~M~~~gv~pd~~--ty~~Li~-~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|+...+....|... .+..+-. .+...|+.++|...|.+...-
T Consensus 356 ~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 356 YFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999998765433321 1222222 235678999999999887654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0027 Score=58.21 Aligned_cols=128 Identities=11% Similarity=0.008 Sum_probs=98.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
|.. +-..+...|++++|...|++..... +.+..+|..+...+...|++++|...+++..+.. +.+...|..+-..+.
T Consensus 16 ~~~-~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKT-QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 334 5567788999999999999887753 3467888899999999999999999999887763 335677888888899
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
..|+.++|.+.|++..+.. ..+...+ -.+...+.+.|++++|...+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999988753 2233444 3334446778888999888876643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0047 Score=64.41 Aligned_cols=128 Identities=9% Similarity=0.086 Sum_probs=93.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCChhhHHH
Q 004743 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPM-----NEASLTAVGRMAM--SMG--DGDMAFDMVKRMKSLGINPRLRSYGP 427 (732)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-----d~~ty~~LI~~~~--~~g--~~~~A~~l~~~M~~~g~~pd~~ty~~ 427 (732)
.++..|.+.|+.+.|.+++++|.+. .| +..+..-|+.++. ..| +..+|+.+|+++... .|+..+-..
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~l 216 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLG 216 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHH
Confidence 3788999999999999999999875 56 3666777776733 334 899999999998654 365445556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~-----gv----~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
++.++.+.|++++|.+.++.+.+. .- .-|..++--+|..+...|+ +|.+++.++... .|..
T Consensus 217 Lln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 217 LLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 666889999999999999876643 11 2345566455555555676 889999999887 4444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0015 Score=68.15 Aligned_cols=124 Identities=8% Similarity=-0.012 Sum_probs=98.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPALSV 431 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-----d~~ty~~lI~~ 431 (732)
+-..+...|++++|++++.+-...|- .-+...+-.++..+.+.|+.+.|.++++.|.+. .| +..+..-|..+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH
Confidence 66888999999999999998766553 235678889999999999999999999999875 46 35555666666
Q ss_pred HHh--cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 432 FCN--NG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 432 ~~~--~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+.. .| +..+|+.+|+++.+. .|+..+...|+.++.+.|++++|...++.+.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333 34 999999999999765 36655556666789999999999999997765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0035 Score=53.90 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
..+|..+...+...|++++|.++++++.... +.+..++..+...+.+.|+.++|..+++++.+.. ..+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999988763 3457788889999999999999999999998764 3467888999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 004743 467 SVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~ 486 (732)
|...|+.++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998776
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0022 Score=72.78 Aligned_cols=130 Identities=8% Similarity=-0.093 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-..|...|++++|.+.+++..+.. +-+...|..+-..|
T Consensus 25 ~~~~-lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 25 AWLM-LADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444 7778889999999999999988764 3467889999999999999999999999988763 23467888888999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 004743 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~---g~~~~A~~l~~~M~~~ 486 (732)
.+.|+.++|.+.+++..+.. .-+...+..+...+... |+.++|.+.+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999988764 23567888899999999 9999999999998776
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0042 Score=72.81 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=112.5
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPAL 429 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI 429 (732)
...|++ |=..|.+.|++++|.+.|++..+.. +-+..+|+.|-.+|.+.|++++|.+.|++..+. .|+ ...|..+=
T Consensus 9 a~al~n-LG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNN-LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445667 7788999999999999999988753 235789999999999999999999999998765 455 67888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..|.+.|++++|.+.|++..+.. .-+...|+.|-.+|.+.|++++|...|++..+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753 234678999999999999999999999998775
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0039 Score=54.12 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+...|++++|.+.|++..... +.+...|..+...+...|++++|.+.+++..... +.+...|..+-..|...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 5566667777777777777766542 3356677777777777777777777777766542 2235566666667777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
+++|...|++..+.. ..+...+..+..++.+.|+
T Consensus 96 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 HVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777766543 1244555555555555444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0011 Score=71.12 Aligned_cols=234 Identities=10% Similarity=-0.063 Sum_probs=158.6
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNVL 232 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~--Gi~---p-d~~tyn~L 232 (732)
....++..+|...|+...+.-. ..+..+ ...+|..+-..|...|+++.|+..|.+..+. ... | ...+++.+
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLI--FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4467899999999999754311 111222 3467888889999999999999999998742 111 1 13456666
Q ss_pred HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHH
Q 004743 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
=..|. ..|++++|...|... -++....+-. -..+|+.+-.. +...|++++|...|++-
T Consensus 191 g~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 191 ATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHH
T ss_pred HHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 66677 789999999998511 1111111111 12346667667 89999999999999887
Q ss_pred HHc----CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----C
Q 004743 311 ENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E 382 (732)
Q Consensus 311 ~~~----gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g 382 (732)
.+. +..|+ ...++.. +-..|.+.|++++|.+.+++.... +
T Consensus 251 l~~~~~~~~~~~-------------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 251 IAVFEESNILPS-------------------------------LPQAYFL-ITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp HHHHHHTTCGGG-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccchh-------------------------------HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 652 11111 1223445 778899999999999999987642 2
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 383 VPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 383 i~pd~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
-+.....++.|-..|...|+ .++|..++++. +..|+. ..+..+-..|...|+.++|.+.++...+
T Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 299 DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22223446777788888998 77777777654 444443 4666788899999999999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0042 Score=62.42 Aligned_cols=162 Identities=10% Similarity=0.002 Sum_probs=119.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|...|++..+.. |+.... ...+.. +-..|.+.|++++|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA----------------------------ADAQFY-LARAYYQNKEYLLAAS 73 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcch----------------------------HHHHHH-HHHHHHHhCcHHHHHH
Confidence 678899999999999887752 332110 112223 6677889999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCh-hhH-----------------
Q 004743 374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY----------------- 425 (732)
Q Consensus 374 lf~~M~~~gi-~pd-~~ty~~LI~~~~~--------~g~~~~A~~l~~~M~~~g~~pd~-~ty----------------- 425 (732)
.|++.....- .|+ ...+..+-.++.. .|++++|...|++..+.. |+. ..+
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999987531 122 4567777778888 999999999999988752 432 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHhccCCCC
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEA----------GKGDRVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~~~~~~----------g~~~~A~~l~~~M~~~~~~~~ 491 (732)
..+-..|.+.|++++|...|+...+.. |+ ...+..+..+|... |++++|...|++..+. .|.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCC
Confidence 334667889999999999999998753 43 34666777777755 8899999999999887 544
Q ss_pred h
Q 004743 492 P 492 (732)
Q Consensus 492 p 492 (732)
.
T Consensus 228 ~ 228 (261)
T 3qky_A 228 S 228 (261)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0041 Score=54.45 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
..|.. +-..+.+.|++++|.+.|++..... +.+...|..+...|...|++++|.+.+++..+.. ..+...|..+-..
T Consensus 17 ~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKN-KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHH-HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 34444 5566667777777777777766542 2355666666666777777777777776665542 2234555556666
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 004743 432 FCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~ 451 (732)
|.+.|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.013 Score=60.21 Aligned_cols=163 Identities=6% Similarity=-0.068 Sum_probs=117.6
Q ss_pred ccccCChhHHHHHHHHHHHcCC-CCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi-~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
+...|++++|..++++...... .|+... ...|...+...+...+++++|.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~-----------------------------~~~~~~~l~~~~~~~~~~~~Ai 135 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQ-----------------------------FLQWQYYVAAYVLKKVDYEYCI 135 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHH-----------------------------HHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHH-----------------------------HHHHHHHHHHHHHcccCHHHHH
Confidence 7888999999999998876321 111100 0112222556677778999999
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-hhhHHHHHHHHHhcCChHHH
Q 004743 373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR-LRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 373 ~lf~~M~~~gi~-pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~pd-~~ty~~lI~~~~~~g~~~~A 441 (732)
+.|++....... ++ ..+|+.|-..|...|++++|...|++..+. +..+. ..+|..+-..|.+.|+.++|
T Consensus 136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999998874222 23 336999999999999999999999988742 22233 34788899999999999999
Q ss_pred HHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 004743 442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT 485 (732)
Q Consensus 442 ~~l~~~M~~----~gv~pd-~~ty~~Li~~~~~~g~-~~~A~~l~~~M~~ 485 (732)
.+.+++..+ .+..+. ...|..+-.+|.+.|+ .++|...+++...
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999987754 333333 5678888888899995 6999998887643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0079 Score=58.47 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=115.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++..+. .|+....- . ..+... ........++. +-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~--~-~~~~~~------------~~~~~~~~~~~-lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIAL--NIDRTEMY--Y-WTNVDK------------NSEISSKLATE-LALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHHHH--H-HHHSCT------------TSHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHH--H-Hhhhcc------------hhhhhHHHHHH-HHHHHHHCCCHHHHHH
Confidence 66789999999999988765 24322110 0 000000 00001111222 5577889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCC--hHHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE 450 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~ 450 (732)
.|++..+.. +-+...|..+-..|...|++++|...|++..+. .|+ ...|..+-..|...|+ .+.+...+....
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~- 151 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS- 151 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-
Confidence 999988764 346789999999999999999999999998875 354 5677777666665553 344555555543
Q ss_pred CCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHH
Q 004743 451 HGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (732)
Q Consensus 451 ~gv~pd~~ty--~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~ 496 (732)
.|+...| ..+-.++...|+.++|...|++..+. .|+.....
T Consensus 152 ---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 152 ---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4554433 22333456678999999999999876 66655333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0042 Score=58.26 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=95.0
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh--
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-- 438 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~-~~~~g~~-- 438 (732)
+...|++++|.+.|++..... +.+...|..+-..|...|++++|...|++..+.. +.+...|..+-.. |...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345678888998888877653 4567889999999999999999999999987653 2245566666667 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++|...++...+.. .-+...+..+-..|...|+.++|...|++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998764 234677888888999999999999999998876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.011 Score=58.15 Aligned_cols=158 Identities=10% Similarity=0.034 Sum_probs=111.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|+++.... |+.... ...+.. +-..|.+.|++++|.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYS----------------------------QQVQLD-LIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 667899999999999988752 322110 011223 6678889999999999
Q ss_pred HHHHHHhCCCC-CCH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCChh-hHH------
Q 004743 374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLR-SYG------ 426 (732)
Q Consensus 374 lf~~M~~~gi~-pd~-~ty~~LI~~~~~------------------~g~~~~A~~l~~~M~~~g~~pd~~-ty~------ 426 (732)
.|++..+..-. +.. ..+-.+-.++.. .|+.++|...|++..+. .|+.. .+.
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99998875321 221 133333333332 57899999999998865 35432 221
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 -----------PALSVFCNNGDVDKACSVEEHMLEHGVYPEE----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 -----------~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~----~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-..|.+.|+.++|...|+.+.+.- |+. ..+..+..+|.+.|+.++|...++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 23446788899999999999988753 442 46778888999999999999999998876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0084 Score=62.18 Aligned_cols=203 Identities=9% Similarity=0.014 Sum_probs=135.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcccccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY 283 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~ 283 (732)
.|++++|.+++++..+.-- .. +.. ..|++++|...|. ...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~---------~~~~~~~A~~~~~-------~a~------------- 43 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMK---------WKPDYDSAASEYA-------KAA------------- 43 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSS---------CSCCHHHHHHHHH-------HHH-------------
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccC---------CCCCHHHHHHHHH-------HHH-------------
Confidence 5678889999888775311 10 110 1467788888874 221
Q ss_pred ccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC-ChhhhHHHHHHHH
Q 004743 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSED 362 (732)
Q Consensus 284 LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~ 362 (732)
.. |...|++++|...|.+..+.... .|-.+ -..+|+. +-..|
T Consensus 44 --~~------~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~a~~~~~-lg~~~ 86 (307)
T 2ifu_A 44 --VA------FKNAKQLEQAKDAYLQEAEAHAN----------------------------NRSLFHAAKAFEQ-AGMML 86 (307)
T ss_dssp --HH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH-HHHHH
T ss_pred --HH------HHHcCCHHHHHHHHHHHHHHHHH----------------------------cCCHHHHHHHHHH-HHHHH
Confidence 12 67778888888888776543100 00000 0124445 66778
Q ss_pred HhccCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVF 432 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~lI~~~ 432 (732)
.+.|++++|.+.|++.... |-.. -..+|+.+-..|.. |++++|...+++.... |-.+ -..+|+.+-..|
T Consensus 87 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 87 KDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 8889999999998875532 2111 13577888888888 9999999999876543 2111 145778888899
Q ss_pred HhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 433 CNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~----gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
.+.|++++|.+.|++..+. +..+.. ..+..+..++...|+.++|...|++..
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 166 VRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999988753 222222 256667777778899999999999987
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.004 Score=66.53 Aligned_cols=234 Identities=9% Similarity=-0.089 Sum_probs=156.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHH
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GI---KL-GQYHYNVL 232 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p-~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~--Gi---~p-d~~tyn~L 232 (732)
....++..+|...|++..+... ..+..| ...+|..+-..|...|+++.|+..+.+..+. .. .+ ...+++.+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELP--FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGG--GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3466899999999998754321 111112 2357788888999999999999999998742 11 11 13456666
Q ss_pred HHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC--CccccccccccccccccccccCChhHHHHHHHHH
Q 004743 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (732)
Q Consensus 233 L~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (732)
=..|. ..|++++|...|... -++....+-. ...+++.|-.. +...|++++|...|++-
T Consensus 189 g~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 189 AGNYD----------DFKHYDKALPHLEAA----LELAMDIQNDRFIAISLLNIANS------YDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred HHHHH----------HhCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 66666 789999999998511 1111111111 12336666666 88999999999999887
Q ss_pred HHcC---CCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CC
Q 004743 311 ENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV 383 (732)
Q Consensus 311 ~~~g---i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi 383 (732)
.+.. ..|+ ...++.. +-..|.+.|+.++|.+.+++.... +-
T Consensus 249 l~~~~~~~~~~-------------------------------~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 249 AKVSREKVPDL-------------------------------LPKVLFG-LSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHCGGG-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHhhCChh-------------------------------HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6520 0111 1223334 678899999999999999988763 22
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 384 PMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~---~~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
+.....++.+-..|...|+ +++|...+++ .+..|+. ..+..+-..|...|+.++|.+.|+...+
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234556666667777888 7777777765 4444443 4556677889999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0028 Score=65.38 Aligned_cols=164 Identities=7% Similarity=-0.076 Sum_probs=119.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
|...|++++|...|.+..+... ..|-.++ ..+|+. +-..|.+.|++++|.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~----------------------------~~~~~~~~a~~~~~-lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQK----------------------------KAGNEDEAGNTYVE-AYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHH-HHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH----------------------------HhCCHHHHHHHHHH-HHHHHHHCCCHHHHH
Confidence 7788999999999987654310 0000011 234556 778899999999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChHHH
Q 004743 373 EIYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 373 ~lf~~M~~~----gi~p-d~~ty~~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~pd-~~ty~~lI~~~~~~g~~~~A 441 (732)
..|++...- |-.+ -..+|+.+-..|... |++++|...|++..+. +-.+. ..+|+.+-..|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999877642 2111 135788899999996 9999999999987653 11111 35688888999999999999
Q ss_pred HHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 442 CSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 442 ~~l~~~M~~~gv~pd~------~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.|++..+....... ..|..+..++...|+.++|...|++....
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999876533222 15677778889999999999999987653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0048 Score=52.06 Aligned_cols=94 Identities=10% Similarity=0.003 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSV 468 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~ 468 (732)
..+...+...|++++|...|++..+.. ..+...|..+-..+...|++++|.+.++...+.. .. +...|..+-..|.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 333444444444444444444444331 1223344444444555555555555555554432 11 3445555555555
Q ss_pred hc-CChHHHHHHHHHHHhc
Q 004743 469 EA-GKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~-g~~~~A~~l~~~M~~~ 486 (732)
+. |+.++|.+.|++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 55 5555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.019 Score=48.62 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..|..+...+...|++++|...|++..... +.+...|..+-..+...|++++|...+++..+.. ..+...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555555556666666666666555431 1234455555555566666666666666655442 12345555566666
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|+.++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0038 Score=58.82 Aligned_cols=124 Identities=8% Similarity=0.100 Sum_probs=80.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~ 435 (732)
+-..|.+.|++++|...|++..... |+...+..+... +...+...+|...+++..+. .|+ ...+..+-..+...
T Consensus 46 la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~ 121 (176)
T 2r5s_A 46 KADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQV 121 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 6667778888888888888765543 344333222111 11222333467777766654 343 56777777788888
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 436 GDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
|+.++|...|+++.+..-.+ +...+..|...|...|+.++|...|++...
T Consensus 122 g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 122 GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88888888888887654222 245677788888888888888888776543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.011 Score=51.27 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPE----EPELEA 462 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd----~~ty~~ 462 (732)
.|..+...+...|++++|...|++..... +.+...|..+-..|...|++++|...++......- .++ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444555555555555555544431 12334444444555555555555555555443210 111 444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 004743 463 LLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 463 Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+-..|.+.|++++|...|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555566666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.013 Score=61.95 Aligned_cols=130 Identities=11% Similarity=-0.025 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (732)
.|.. +-..|.+.|++++|...|++.....-... ..+|..+-.+|.+.|++++|...+++..+..
T Consensus 149 ~~~~-~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 149 IVKE-RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444 66788899999999999999887542211 5899999999999999999999999988763
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 004743 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV-YYLLHKLRT 485 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A-~~l~~~M~~ 485 (732)
+.+...|..+-.+|...|++++|...|+...+.. .-+...+..+-..+.+.|+.++| ..++..|-.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357788888899999999999999999988763 23567788888888889998888 456666644
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.012 Score=56.60 Aligned_cols=121 Identities=7% Similarity=-0.088 Sum_probs=96.7
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|++. +.| +...|.. +-..|.+.|++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~--------------------------------~~~~~~~-lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDP--------------------------------HSRICFN-IGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSC--------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCC--------------------------------ChHHHHH-HHHHHHHcCCHHHHHH
Confidence 67789999999988744 223 2334445 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------CCCC-hhhHHHHHHHHHhcCCh
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--------------INPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g--------------~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
.|++..... +.+...|..+-.+|...|++++|...|++..+.. ..|+ ...|..+-..|.+.|+.
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 999988764 4567899999999999999999999999988752 1111 26777788899999999
Q ss_pred HHHHHHHHHHHHCC
Q 004743 439 DKACSVEEHMLEHG 452 (732)
Q Consensus 439 ~~A~~l~~~M~~~g 452 (732)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999988653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.025 Score=47.79 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|.. +...+...|++++|.+.|++..... +.+...|..+...+...|++++|...+++..+.. +.+...|..+-..+
T Consensus 6 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKE-KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3445 6678889999999999999988753 3477889999999999999999999999988763 23567888888999
Q ss_pred HhcCChHHHHHHHHHHHHCC
Q 004743 433 CNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g 452 (732)
...|+.++|.+.++...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999988653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.016 Score=50.55 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 384 ~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
+.+...|..+...+...|++++|...|++..+.. ..+...|..+-..|...|+.++|.+.+++..+.. ..+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4567788999999999999999999999987652 2357788888889999999999999999988764 3357788889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
-..|.+.|++++|...|++....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.022 Score=58.43 Aligned_cols=163 Identities=6% Similarity=-0.069 Sum_probs=115.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...+.+..+..-. +..... ....+.. +...+...|++++|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~--------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEY-HPEFQQ--------------------------FLQWQYY-VAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCC-CHHHHH--------------------------HHHHHHH-HHHHHHTSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccC-ChhHHH--------------------------HHHHHHH-HHHHHhcCCCHHHHHH
Confidence 77889999999999877664211 000000 0111122 4556778899999999
Q ss_pred HHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHHhcCChHHHH
Q 004743 374 IYEKMCLDE---VPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 374 lf~~M~~~g---i~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-g~~pd-----~~ty~~lI~~~~~~g~~~~A~ 442 (732)
.|++..... ..+. ..+|+.+-..|...|++++|...+++..+. ...|+ ..+|+.+-..|.+.|++++|.
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 999887532 1222 458999999999999999999999987632 11122 258888899999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 004743 443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR 484 (732)
Q Consensus 443 ~l~~~M~~~----gv~pd-~~ty~~Li~~~~~~g~~~~A-~~l~~~M~ 484 (732)
+.+++..+. +.... ..+|..+-..|.+.|+.++| ...+++-.
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999887643 22222 56788888899999999999 77676643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0072 Score=57.45 Aligned_cols=129 Identities=14% Similarity=-0.016 Sum_probs=96.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--ChhhHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRSYG 426 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p--d~~ty~ 426 (732)
+-..|...|++++|.+.|++... .|..| ...+++.+-..|...|++++|...+++.... +-.| ....+.
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 66778889999999999998775 22222 3467888888999999999999999876543 2122 245677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+-..+...|++++|...+++..+. +-.+ -..++..+-..+...|++++|...+++..+.
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 7788889999999999999887642 2111 1234577778889999999999999876543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0081 Score=52.13 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----hhhHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--NPR----LRSYG 426 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~--~pd----~~ty~ 426 (732)
.|.. +-..+...|++++|...|++..... +.+...|..+...|...|++++|...+++.....- .++ ..+|.
T Consensus 6 ~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKE-LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444 6678889999999999999988764 45778899999999999999999999999876531 222 66788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (732)
.+-..|...|++++|.+.|+...+.. |+...+..+-..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 88899999999999999999998753 565555544433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.052 Score=62.99 Aligned_cols=138 Identities=9% Similarity=-0.024 Sum_probs=103.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-g-i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
.+...-+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|.++|+...+. +.-+...+...+......
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 566667788999999999999876 3 2344444444444322 35699999999988876 333455567888888889
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHH
Q 004743 436 GDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~I~ 499 (732)
|+.+.|..+|+......-.+ ....|...++.-.+.|+.+.+..+.+++.+. .|..+....+.
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~ 581 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFT 581 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 99999999999988764322 3467888999889999999999999999998 66655555533
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.026 Score=48.66 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
+...|..+...+...|++++|...+++..... +.+...|..+-..+...|++++|.+.++...+.. ..+...|..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45678888889999999999999999987763 3367788888899999999999999999988763 335778888889
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|.+.|+.++|...|++....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998776
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.013 Score=49.33 Aligned_cols=97 Identities=9% Similarity=0.020 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALS 430 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~ty~~lI~ 430 (732)
.|.. +-..+.+.|++++|...|++..+.. +.+...|..+-..+...|++++|.+.+++..+.. .. +...|..+-.
T Consensus 8 ~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYL-EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGG-HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHH-HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3444 6677889999999999999988754 3467889999999999999999999999988763 22 4778888889
Q ss_pred HHHhc-CChHHHHHHHHHHHHCC
Q 004743 431 VFCNN-GDVDKACSVEEHMLEHG 452 (732)
Q Consensus 431 ~~~~~-g~~~~A~~l~~~M~~~g 452 (732)
.+.+. |+.++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0077 Score=61.96 Aligned_cols=125 Identities=6% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI-~~~~~~g 436 (732)
+-..+.+.|++++|.+.|++..... +-+...+..|...+...|++++|..++++.... .|+........ ..+...+
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhc
Confidence 3445566677777777777766542 224566666777777777777777777665433 34433222221 2245556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+.|.+.+++..+.. ..+...+..+-..|...|+.++|...|.++...
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666666666666543 234556666666777777777777777776665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.018 Score=65.14 Aligned_cols=119 Identities=11% Similarity=-0.009 Sum_probs=86.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l 444 (732)
.|++++|.+.|++..+.. +-+...|..+-..|...|++++|.+.+++..+.. +-+...|..+-..|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367889999999877643 3357889999999999999999999999987652 23467888888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+++..+.. .-+...|..+-..|.+.|+.++|.+.|++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988764 335778889999999999999999999998776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.014 Score=68.12 Aligned_cols=124 Identities=10% Similarity=-0.027 Sum_probs=105.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+. .| +...|..+-..|.+.|
T Consensus 439 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 439 EVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 6678889999999999999988753 346788999999999999999999999998765 34 4567788888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++++ .+.|++..+.. .-+...|..+-.+|.+.|+.++|...|++..+.
T Consensus 516 ~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 516 NTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 9999 99999988754 235678888999999999999999999987654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.058 Score=55.22 Aligned_cols=166 Identities=10% Similarity=-0.006 Sum_probs=113.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 190 ~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+...+..+-..+.+.|++++|+.+|++..... +-+...+..|-..+. ..|+.++|...+. ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~----------~~g~~~~A~~~l~-------~~ 177 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLI----------ALNRSEDAEAVLX-------TI 177 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHH----------HTTCHHHHHHHHT-------TS
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH----------HCCCHHHHHHHHH-------hC
Confidence 33566677788889999999999999998653 224556666666666 6677777777774 11
Q ss_pred cccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~p 349 (732)
... .|+..
T Consensus 178 ~~~-------------------------------------------~p~~~----------------------------- 185 (287)
T 3qou_A 178 PLQ-------------------------------------------DQDTR----------------------------- 185 (287)
T ss_dssp CGG-------------------------------------------GCSHH-----------------------------
T ss_pred chh-------------------------------------------hcchH-----------------------------
Confidence 111 11111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHH
Q 004743 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSYGPA 428 (732)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~ty~~l 428 (732)
.......-.+.+.+..++|.+.|++..... +.+...+..+-..|...|++++|...|.+..+..-. .+...+..+
T Consensus 186 ---~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 186 ---YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp ---HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred ---HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 001112233455666777888888777653 456788888999999999999999999988876321 125678888
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 004743 429 LSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~ 449 (732)
...|...|+.++|...|++-.
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 888888888888888777644
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.066 Score=53.41 Aligned_cols=129 Identities=11% Similarity=0.028 Sum_probs=99.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-hhhHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR-LRSYGPALSVF 432 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd-~~ty~~lI~~~ 432 (732)
+-..+.+.|++++|.+.|++..... +-+ ...+..+-.+|.+.|++++|...|+...+..- .|. ...+..+-.++
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 4567788999999999999998764 122 67788889999999999999999999887621 122 34555566677
Q ss_pred Hh--------cCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 433 CN--------NGDVDKACSVEEHMLEHGVYPEE-PEL-----------------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 433 ~~--------~g~~~~A~~l~~~M~~~gv~pd~-~ty-----------------~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. .|+.++|...|++..+.. |+. ..+ ..+-..|.+.|++++|...|++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77 999999999999998753 332 222 34566788999999999999999876
Q ss_pred cCCCC
Q 004743 487 VRKVS 491 (732)
Q Consensus 487 ~~~~~ 491 (732)
.|.
T Consensus 178 --~p~ 180 (261)
T 3qky_A 178 --YPD 180 (261)
T ss_dssp --CTT
T ss_pred --CCC
Confidence 444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0059 Score=56.16 Aligned_cols=120 Identities=9% Similarity=0.022 Sum_probs=93.5
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
+...|++++|++.+...... .| +...+-.|-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 34567889999988876543 23 33456678889999999999999999987752 2356788888899999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhc
Q 004743 441 ACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYL-LHKLRTS 486 (732)
Q Consensus 441 A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~l-~~~M~~~ 486 (732)
|...|+...+.. | +...|..+-..|.+.|+.++|.+. +++..+.
T Consensus 84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999988753 5 467888888899999998876654 5665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.031 Score=49.28 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
.+...|..+-..+...|++++|...|.+..... +.+...|..+-..|...|++++|...++...+.. .-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345666667777777777777777777665542 2235566666667777777777777777766543 22456666777
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 004743 465 RVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 465 ~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.03 Score=51.77 Aligned_cols=91 Identities=11% Similarity=-0.023 Sum_probs=43.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+.+.|++++|...|++..... +-+...|..+-.+|...|++++|...|++..+.. +-+...|..+=.+|.+.|+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555554432 2234455555555555555555555555544431 1123344444445555555
Q ss_pred hHHHHHHHHHHHH
Q 004743 438 VDKACSVEEHMLE 450 (732)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (732)
.++|...|+...+
T Consensus 120 ~~eA~~~~~~al~ 132 (151)
T 3gyz_A 120 PLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.12 Score=50.58 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=65.9
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 422 (732)
.+...|+.++|...|++..+.. |+. ..+ -.+-..|.+.|++++|...|+++.+. .|+.
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred hhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence 3445678999999999988753 332 222 23455678899999999999998876 2442
Q ss_pred ----hhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 423 ----RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 423 ----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 467778899999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0094 Score=54.73 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=85.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g 436 (732)
+=..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|...|++..+. .|+ ...|..+-..|.+.|
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 6678999999999999999988754 347889999999999999999999999998875 354 677888888999999
Q ss_pred ChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004743 437 DVDKACSV-EEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (732)
Q Consensus 437 ~~~~A~~l-~~~M~~~gv~pd-~~ty~~Li~~~~~~g~ 472 (732)
+.++|.+. ++...+. .|+ ...|...-..+...|+
T Consensus 114 ~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 114 VTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred ChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99876655 5666653 354 4556655555555553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.022 Score=52.74 Aligned_cols=123 Identities=4% Similarity=-0.100 Sum_probs=94.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
+.+.+...+.++++.+ +.| +...+..+-..+.+.|++++|...|++..... +-+...|..+=.+|...|
T Consensus 15 l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 15 VIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHc
Confidence 4455555555444432 334 33467777888999999999999999988762 235677888888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
++++|.+.|+...+.. .-+...|..+-.+|.+.|+.++|...|++..+. .+.+.
T Consensus 85 ~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 85 QFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999998764 224667888889999999999999999999887 55554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.055 Score=48.03 Aligned_cols=90 Identities=10% Similarity=-0.019 Sum_probs=46.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
+-..+.+.|++++|.+.|++.... .|+ ...|..+...|...|++++|...+++..+.. +.+...|..+-..|.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHH
Confidence 445555566666666666665543 244 3455555555555555555555555544431 112334444444455
Q ss_pred hcCChHHHHHHHHHHHH
Q 004743 434 NNGDVDKACSVEEHMLE 450 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (732)
..|+.++|...|++..+
T Consensus 111 ~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.13 Score=52.33 Aligned_cols=96 Identities=5% Similarity=-0.069 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCL---D-EVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR- 421 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~-gi~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd- 421 (732)
+|+. +-..|...|++++|.+.|++... . +-.+ ...+|+.+-..|...|++++|...+++..+. +....
T Consensus 157 ~~~~-lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENA-IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4455 77788899999999999998762 1 1111 1258899999999999999999999986543 21111
Q ss_pred hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 004743 422 LRSYGPALSVFCNNGDVDKA-CSVEEHML 449 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A-~~l~~~M~ 449 (732)
..+|..+-..|.+.|+.++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56777788889999999999 77676644
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.034 Score=49.32 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=53.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..|.+.|++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|...|++..+.. +.+...|..+-.+|...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 45566666777777766655542 3355666666666666666666666666655431 123445555556666666666
Q ss_pred HHHHHHHHHHH
Q 004743 440 KACSVEEHMLE 450 (732)
Q Consensus 440 ~A~~l~~~M~~ 450 (732)
+|.+.|+...+
T Consensus 99 ~A~~~~~~al~ 109 (126)
T 4gco_A 99 KAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.063 Score=47.63 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (732)
.+...+..+...+...|++++|.+.|++..+. .|+ ...|..+-..|...|++++|.+.++...+.. ..+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46778888899999999999999999998765 466 6788888889999999999999999988753 2357788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHHHHH
Q 004743 461 EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADVIAK 500 (732)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p-~t~~~I~~ 500 (732)
..+-.+|...|+.++|...|++.... .+.. ..+..+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 88889999999999999999998876 4433 34444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.048 Score=48.34 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
.|..+=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.|+...+.. ..+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45555667889999999999999987652 3457788888899999999999999999988764 345778889999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998775
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.028 Score=50.69 Aligned_cols=89 Identities=15% Similarity=0.064 Sum_probs=45.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|+...... +-+...|..+-.+|...|++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 344455556666666665555432 2244555555555555566666655555554432 11233444444455555555
Q ss_pred HHHHHHHHHHH
Q 004743 439 DKACSVEEHML 449 (732)
Q Consensus 439 ~~A~~l~~~M~ 449 (732)
++|.+.|+...
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.07 Score=48.38 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..|..+-..+...|++++|...|++..... +.+...|..+-..+...|++++|.+.++...+.. ..+...|..+-.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 457777888899999999999999987752 2357788888889999999999999999988764 34577888888999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|+.++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999998876
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.038 Score=48.70 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=82.1
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~ 430 (732)
...|.. +-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...+++..+.. +-+...|..+-.
T Consensus 9 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 444555 6778889999999999999988764 3467899999999999999999999999988763 235678888889
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 004743 431 VFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.|...|++++|...|+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999987653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.012 Score=52.98 Aligned_cols=131 Identities=14% Similarity=-0.009 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-Chh
Q 004743 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLR 423 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ 423 (732)
+.. +-..|...|++++|.+.+++.....- .++ ..++..+-..+...|++++|.+.+++.... +-.+ ...
T Consensus 12 ~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 12 FGN-LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444 66778889999999999988765311 112 247888889999999999999999987643 1111 145
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+..+-..+...|+.++|.+.+++..+. +-.+ ....+..+-..|...|+.++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777788889999999999999887643 2111 134677788888999999999999987654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.025 Score=58.00 Aligned_cols=128 Identities=10% Similarity=0.019 Sum_probs=97.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PR----LRSYGP 427 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd----~~ty~~ 427 (732)
.+..+...|++++|.+++++..... ..|+. ..|..+...+...|++++|...|++....... ++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999999988742 22332 23445666677788999999999998874322 23 236888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 428 ALSVFCNNGDVDKACSVEEHMLE----H-GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~----~-gv~pd~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+-..|...|+.++|.+.|+...+ . +..+.. .+|..+-..|.+.|++++|...+++..+
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999874 1 222333 3778888999999999999999987654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.029 Score=51.34 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|...|+.+
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 106 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGELA 106 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHH
Confidence 34444455555555554444332 2234444444444444555555555554444321 112233333444444444444
Q ss_pred HHHHHHHHH
Q 004743 440 KACSVEEHM 448 (732)
Q Consensus 440 ~A~~l~~~M 448 (732)
+|.+.|+..
T Consensus 107 ~A~~~~~~a 115 (148)
T 2vgx_A 107 EAESGLFLA 115 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.053 Score=50.74 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
+|...|++..+.. +-+...+..+-..+...|++++|...|++..+..-.+ +...+..+...|...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4677777766543 2357888888899999999999999999887653222 2457888888899999999999888876
Q ss_pred H
Q 004743 449 L 449 (732)
Q Consensus 449 ~ 449 (732)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.021 Score=53.36 Aligned_cols=123 Identities=7% Similarity=-0.003 Sum_probs=92.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|...|.+..+.. |+ +...|.. +-..|...|++++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~-------------------------------~~~~~~~-lg~~~~~~~~~~~A~~ 65 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQ-------------------------------NSEQWAL-LGEYYLWQNDYSNSLL 65 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CS-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--CC-------------------------------cHHHHHH-HHHHHHHcCCHHHHHH
Confidence 667788888988888766542 22 2223334 6778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~--~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.|++..... +.+...|..+... +...|++ ++|...+++..+.. +-+...|..+-..|...|+.++|...|+...+
T Consensus 66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999988754 3467788888888 7789998 99999999988763 23466777888899999999999999999887
Q ss_pred CC
Q 004743 451 HG 452 (732)
Q Consensus 451 ~g 452 (732)
..
T Consensus 144 ~~ 145 (177)
T 2e2e_A 144 LN 145 (177)
T ss_dssp TC
T ss_pred hC
Confidence 63
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.041 Score=48.04 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...++...+.. .-+...|..+-.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444445555566666666665554431 1234455555555556666666666666555442 123445555555666
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
..|+.++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666655443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.038 Score=50.93 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..|..+-..+...|++++|...|++..+.. .-+...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.+|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555666666666665554431 1234455555555666666666666666655443 22355555666666
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.039 Score=50.44 Aligned_cols=99 Identities=11% Similarity=-0.087 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (732)
+...+..+-..+...|++++|...|+...... +.+...|..+-.+|...|++++|...|+...+.. .-+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34567777888999999999999999987652 2356777778888999999999999999998764 234577788888
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|...|+.++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.049 Score=47.51 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=78.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~ 437 (732)
+-..+.+.|++++|.+.|++..... +.+...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.+|...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 5567889999999999999988754 4468899999999999999999999999988763 2346778888889999999
Q ss_pred hHHHHHHHHHHHHC
Q 004743 438 VDKACSVEEHMLEH 451 (732)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (732)
.++|.+.|++..+.
T Consensus 88 ~~~A~~~~~~al~~ 101 (126)
T 3upv_A 88 YASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.043 Score=49.41 Aligned_cols=97 Identities=14% Similarity=-0.045 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (732)
..+..+-..+...|++++|...|++..... +.+...|..+-.+|.+.|++++|...|+...... .-+...|..+-.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 455566778889999999999999988752 2356677778888999999999999999998764 33456677888899
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 004743 468 VEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 468 ~~~g~~~~A~~l~~~M~~~ 486 (732)
...|++++|...|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.043 Score=50.58 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~ 431 (732)
..|.. +-..|.+.|++++|.+.|++..... +-+...|..+-.+|...|++++|...|++..+.. .-+...|..+-..
T Consensus 12 ~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKS-EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34445 6678889999999999999988754 3478899999999999999999999999988763 2347788888999
Q ss_pred HHhcCChHHHHHHHHHHHHC
Q 004743 432 FCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~ 451 (732)
|...|++++|.+.|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 99999999999999988764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.059 Score=51.35 Aligned_cols=118 Identities=8% Similarity=-0.110 Sum_probs=73.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CC---C-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PM---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~p---d-----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 422 (732)
+-..+.+.|++++|.+.|++.....- .| . ...|..+-.+|...|++++|...++...... +.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 44566778888888888888776321 11 1 2567777777777888888887777766552 2345
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004743 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (732)
..|..+-.+|...|++++|.+.|+...+.. .-+...+..+-.++...++.+++.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777777777766542 123444555555555444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.14 Score=49.60 Aligned_cols=115 Identities=8% Similarity=-0.043 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----cCC
Q 004743 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGIN-PRLRSYGPALSVFCN----NGD 437 (732)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~-pd~~ty~~lI~~~~~----~g~ 437 (732)
+.++|.+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.. -+...+..|=..|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 6667777777666655 45556666666655 66777777777765554421 014455555555655 567
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-G-----KGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g-----~~~~A~~l~~~M~~~ 486 (732)
.++|.+.|+...+.+ .+...+..|-..|... | +.++|...|++-.+.
T Consensus 145 ~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 145 DVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 777777777766651 2333444444445432 2 677777777776665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.044 Score=56.21 Aligned_cols=129 Identities=11% Similarity=-0.097 Sum_probs=96.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhc
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNN 435 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~ty~~lI~~~~~~ 435 (732)
....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|...|+...... .|. ...+..+=.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 5567888999999999999988754 655455556668889999999999997443221 111 22455566678899
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 004743 436 GDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~ 491 (732)
|++++|+..|++.......|. ......+-.++.+.|+.++|..+|+++... .|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 999999999999885443365 224455556678999999999999999987 555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.015 Score=67.84 Aligned_cols=172 Identities=8% Similarity=-0.074 Sum_probs=124.6
Q ss_pred CCCChhhHHHHhhhccccchhhc--------ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCc
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELG--------DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~--------~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~ 319 (732)
..|+.++|++.+. +.. .. .-.+...|..+-.. +.+.|++++|...|++..+.. |+
T Consensus 403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~-~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~- 465 (681)
T 2pzi_A 403 VLSQPVQTLDSLR-------AARHGALDADGVD-FSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GW- 465 (681)
T ss_dssp TTCCHHHHHHHHH-------HHHTC-------C-CTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CC-
T ss_pred cccCHHHHHHHHH-------Hhhhhcccccccc-cccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cc-
Confidence 5688899999885 332 11 11144446666666 889999999999999887642 22
Q ss_pred cccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004743 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS 399 (732)
Q Consensus 320 ~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~ 399 (732)
+...|+. +=..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+
T Consensus 466 ------------------------------~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 466 ------------------------------RWRLVWY-RAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAEL 513 (681)
T ss_dssp ------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred ------------------------------hHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 2223334 5567889999999999999988754 2356788999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004743 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (732)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~ 472 (732)
.|++++ .+.|++..+.. .-+...|..+-.+|.+.|+.++|.+.|++..+. .|+ ...|..+..++...|.
T Consensus 514 ~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred cCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999 99999887652 224667888889999999999999999987654 466 4556666666655554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.093 Score=46.40 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=28.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~ 414 (732)
..+.+.|++++|++.|++..+.. +-+...|+.+-.+|...|++++|.+.+++..
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555556666666665554432 2234555555555555555555555555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.27 Score=47.61 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=97.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g----~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~ 433 (732)
|=..|...+++++|++.|++..+.| +...+..|-..|.. + +.++|.+.|++..+.| +...+..|=..|.
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 5566777899999999999999887 56777777777777 6 8999999999988775 4555666666666
Q ss_pred h----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 434 N----NGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 434 ~----~g~~~~A~~l~~~M~~~gv~-pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
. .++.++|.+.|+...+.|-. -+...+..|=..|.. .++.++|...|++-.+.
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 6 78999999999999877621 026677777777777 78899999999998775
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.07 Score=58.65 Aligned_cols=122 Identities=13% Similarity=0.050 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHhcc---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 353 DADEIRLSEDAKKY---AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----GDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 353 tyn~~lI~~~~k~g---~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
.+.. |-..|.+.| +.++|++.|++..+.| .++...+..|-..|... ++.++|.+.|+... .| +...+
T Consensus 178 a~~~-Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~ 251 (452)
T 3e4b_A 178 CYVE-LATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASW 251 (452)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHH
T ss_pred HHHH-HHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHH
Confidence 4444 556677788 8899999999988887 44555555566666544 68899999998876 33 33333
Q ss_pred HHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 004743 426 GPALSV-F--CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-----KGDRVYYLLHKLR 484 (732)
Q Consensus 426 ~~lI~~-~--~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-----~~~~A~~l~~~M~ 484 (732)
..|=.. | ...++.++|.+.|+...+.| +...+..|-..|. .| +.++|...|++-.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 333333 2 45789999999999988877 5566666666665 55 8889999888765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.15 Score=44.23 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLR 465 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~ 465 (732)
-..+...|++++|...|+...+.. |+. ..+..+-..+.+.|++++|...|+...+.. |+ ...+..+-.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344555666666666666655432 222 244445556666666677766666665542 32 344555666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 004743 466 VSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 466 ~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|.+.|+.++|...|++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666777777777777776655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.54 Score=48.75 Aligned_cols=232 Identities=9% Similarity=-0.031 Sum_probs=152.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCcccCCCC--ChhhHHHHhhhccccchhhcccCCCCCccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~~~~~~~k~g--~~~~A~~~~~~~~~~s~em~~~~g~~d~~t 280 (732)
...-++|+++++.+.... |+ ...|+.-=..+. ..| .+++++..++ .+... ...+-..
T Consensus 46 ~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~a 105 (306)
T 3dra_A 46 EEYSERALHITELGINEL--ASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQI 105 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCHH
T ss_pred CCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHHH
Confidence 344468999999998653 44 344555444454 445 8889998885 33322 2223333
Q ss_pred cccccccccccccc----ccc---CChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhh
Q 004743 281 LDYGSSPMIDKLES----NSS---YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (732)
Q Consensus 281 yn~LI~~~~~~~~~----~~~---g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~t 353 (732)
|+.--.. + ... +++++++.+++.+.+.. ...| ..
T Consensus 106 W~~R~~i------L~~~~~~l~~~~~~~~EL~~~~~~l~~~----pkny-----------------------------~a 146 (306)
T 3dra_A 106 WNYRQLI------IGQIMELNNNDFDPYREFDILEAMLSSD----PKNH-----------------------------HV 146 (306)
T ss_dssp HHHHHHH------HHHHHHHTTTCCCTHHHHHHHHHHHHHC----TTCH-----------------------------HH
T ss_pred HHHHHHH------HHHHHHhccccCCHHHHHHHHHHHHHhC----CCCH-----------------------------HH
Confidence 5433222 2 222 67899999999988752 2222 12
Q ss_pred hHHHHHHHHHhccCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCChhhH
Q 004743 354 ADEIRLSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 354 yn~~lI~~~~k~g~~~--~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~------~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
|+. ---.+.+.|.++ ++++.+++|.+.. +-|-..|+---..+...|. ++++++.+..+.... +-|...|
T Consensus 147 W~~-R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW 223 (306)
T 3dra_A 147 WSY-RKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTW 223 (306)
T ss_dssp HHH-HHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHH-HHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHH
Confidence 333 223334455666 8999999999865 4577888877777777776 889999999888763 3567888
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 004743 426 GPALSVFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~-A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~ 497 (732)
+-+-..+.+.|.... +.++.....+.+ -..+...+..+.+.|++.|+.++|.++++.+.+....+..+.|.-
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 888888888887444 555666655432 134778899999999999999999999999987422333334543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.12 Score=49.93 Aligned_cols=120 Identities=9% Similarity=-0.021 Sum_probs=90.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTA----------------VGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~ty~~----------------LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 422 (732)
..+.+.|++++|...|++..... | +...|.. +-.+|.+.|++++|...|++..+.. +-+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 45668899999999999988753 4 3445666 8888999999999999999988762 2356
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHH
Q 004743 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK--GDRVYYLLHKL 483 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~--~~~A~~l~~~M 483 (732)
..|..+-..|...|+.++|.+.|++..+.. .-+...|..|-..|...|. .+.+...+...
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788888899999999999999999998764 2346677777777765554 34455555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.036 Score=52.42 Aligned_cols=122 Identities=12% Similarity=-0.028 Sum_probs=89.6
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCC
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGD 437 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ty~~lI~~~~~~g~ 437 (732)
...|++++|.++++.+.. .......++..+-..+...|++++|...+++.... |..| ...++..+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 357899999996655543 22235678899999999999999999999987652 2222 24677778888999999
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 438 VDKACSVEEHMLEH----GVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 438 ~~~A~~l~~~M~~~----gv~p--d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+++|.+.+++..+. +-.| ....+..+-..+...|++++|...+++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999887653 2121 234577788888999999999999988754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.017 Score=50.15 Aligned_cols=86 Identities=10% Similarity=-0.015 Sum_probs=50.2
Q ss_pred ccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004743 365 KYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi--~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~ 442 (732)
.|++++|...|++..+.+. +-+...|..|-..|...|++++|...|++..+.. +-+...|..+-.+|...|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566667777776665431 2234556666666777777777777777666542 123455555666666677777777
Q ss_pred HHHHHHHHC
Q 004743 443 SVEEHMLEH 451 (732)
Q Consensus 443 ~l~~~M~~~ 451 (732)
+.++...+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.13 Score=45.34 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELE 461 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd----~~ty~ 461 (732)
.++.-|=..+.+.|++++|.+.|++..+.. +-+...|+.+=.+|.+.|++++|.+.++...+.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 455666678889999999999999987652 2346778888889999999999999999887532 1222 23677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHH
Q 004743 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (732)
Q Consensus 462 ~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~t~~~I~ 499 (732)
.+=.++...|++++|.+.|++-... .+.|++...|.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 7778899999999999999988776 67777655444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.56 Score=50.09 Aligned_cols=209 Identities=8% Similarity=-0.021 Sum_probs=126.0
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCC-CCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRS---------EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQY 227 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~-~~p---------~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~-Gi~pd~~ 227 (732)
.+.+.++..+|.+.|....+........ ... -...+..+...|.+.|++++|.+++..+... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3457789999999999987643322110 000 0134778899999999999999999887632 1112222
Q ss_pred HHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHH
Q 004743 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (732)
Q Consensus 228 tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (732)
+-..+...+. .+ +...|..+.|..++
T Consensus 93 ~~~~~~~~l~--------------------~~----------------------------------~~~~~~~~~a~~~~ 118 (434)
T 4b4t_Q 93 TVKVLKTLIE--------------------KF----------------------------------EQVPDSLDDQIFVC 118 (434)
T ss_dssp HHHHHHHHHH--------------------HH----------------------------------CSCCSCHHHHHHHH
T ss_pred HHHHHHHHHH--------------------HH----------------------------------HhCCCCHHHHHHHH
Confidence 2111111111 00 22334455555555
Q ss_pred HHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CC-
Q 004743 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EV- 383 (732)
Q Consensus 308 ~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi- 383 (732)
.+...... ..+-.+.. .++.. +...|...|++++|..++++.... +.
T Consensus 119 ~~~~~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 119 EKSIEFAK----------------------------REKRVFLKHSLSIK-LATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHH----------------------------HSSCCSSHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH----------------------------HhCccHHHHHHHHH-HHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 44332100 00000111 12233 778888999999999999887642 21
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 384 -PM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 384 -~p-d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.| ...+|..++..|...|++++|..+++..... +..|. ...|..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2457888999999999999999999876532 22222 35566667777788999999888776643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.1 Score=45.74 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=58.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
+-..+.+.|++++|...|++..... +-+...|..+-.++...|+.++|...|++..+. .| +...+..+-..|...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3345667777777777777766643 235666666777777777777777777766554 23 3445556666666777
Q ss_pred ChHHHHHHHHHHHH
Q 004743 437 DVDKACSVEEHMLE 450 (732)
Q Consensus 437 ~~~~A~~l~~~M~~ 450 (732)
+.++|...++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.032 Score=61.95 Aligned_cols=120 Identities=11% Similarity=-0.015 Sum_probs=90.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
..+.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|.+.+++..+.. +-+...|..+-.+|.+.|+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999988753 3458899999999999999999999999988762 234678888888999999999
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 004743 440 KACSVEEHMLEHGV-YPEEPELEALLRVSVEAGKGDRVYYLLH 481 (732)
Q Consensus 440 ~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~~~g~~~~A~~l~~ 481 (732)
+|.+.|++..+..- .++....-..+..+.+.|++++|.++++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887531 2233333333334788899999999988
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.26 Score=42.56 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=76.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~ty~~lI~ 430 (732)
+-..+.+.|++++|.+.|++.....- .+. ..+..+-.++...|++++|...|++..... |+ ...+..+-.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 44567789999999999999887531 122 477778889999999999999999988753 43 455677778
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 004743 431 VFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (732)
+|...|+.++|...|+...+.. |+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 8999999999999999988753 5543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.067 Score=54.85 Aligned_cols=125 Identities=11% Similarity=-0.069 Sum_probs=88.4
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|++++|.++|+.+...+ |+-+ .... +-..+.+.+++++|+.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~--------------------------------~~~~-~a~l~~~~~r~~dA~~ 156 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHL--------------------------------VAWM-KAVVYGAAERWTDVID 156 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHH--------------------------------HHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchH--------------------------------HHHH-HHHHHHHcCCHHHHHH
Confidence 778899999999998665533 3221 1112 3347789999999999
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 374 IYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 374 lf~~M~~~gi~pd--~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
.|+...... .|. ...+..|=.++...|++++|+..|++.......|.. ......-.++.+.|+.++|..+|+++.
T Consensus 157 ~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 157 QVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998543321 111 236777778899999999999999987744332542 234445566888999999999999998
Q ss_pred HCCCCCC
Q 004743 450 EHGVYPE 456 (732)
Q Consensus 450 ~~gv~pd 456 (732)
... |+
T Consensus 236 a~~--P~ 240 (282)
T 4f3v_A 236 TTH--PE 240 (282)
T ss_dssp HHS--CC
T ss_pred hcC--Cc
Confidence 753 55
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.073 Score=46.69 Aligned_cols=94 Identities=12% Similarity=-0.034 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (732)
+-.+-..+.+.|++++|...|++..+. .| +...|..+=.++...|+.++|...|++..+.. .-+...+..|-.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344556778999999999999998875 34 56777778888999999999999999988764 225677888889999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 004743 469 EAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~ 486 (732)
+.|+.++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.14 Score=56.28 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=73.8
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-----C
Q 004743 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-A--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-----D 437 (732)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~--~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g-----~ 437 (732)
++.++|.+.|++.. .| +...+..|-.. | ...++.++|.+.|++-.+.| +...+..|=..|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 68888888888877 44 34445555544 3 35788889999998888776 4445554544554 55 8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
.++|.+.|+... .| +...+..|-..|.. ..+.++|...|++-.+.
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 888888888766 33 45555555555544 33788888888887766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.029 Score=48.65 Aligned_cols=87 Identities=17% Similarity=0.044 Sum_probs=68.3
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g--~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (732)
..|++++|...|++..+.+ -+-+...|..+-..|...|++++|.+.|++..+.. .-+...|..+-.+|.+.|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999988764 12235678888889999999999999999998764 23467788888999999999999
Q ss_pred HHHHHHHHhc
Q 004743 477 YYLLHKLRTS 486 (732)
Q Consensus 477 ~~l~~~M~~~ 486 (732)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.87 Score=48.53 Aligned_cols=123 Identities=7% Similarity=0.003 Sum_probs=90.3
Q ss_pred HhccCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--CCC-hhhHHHHHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NPR-LRSYGPALSVF 432 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~----~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~--g~--~pd-~~ty~~lI~~~ 432 (732)
...|..+.|.+++.+... .+..+. ..++..|...|...|++++|..++.+.... +. .|. ..+|..++..|
T Consensus 106 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
T 4b4t_Q 106 QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY 185 (434)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 345788888888877653 333343 457888999999999999999999987654 11 122 45788899999
Q ss_pred HhcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 433 CNNGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~--gv~-p-d--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
...|++++|..+++..... .+. | . ...|..+...+...|++++|...|.+..+
T Consensus 186 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 186 HKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999876532 121 2 1 24566667777889999999988877643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.058 Score=60.07 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=89.7
Q ss_pred HHHhccCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLD---EVP---MN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYG 426 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~---gi~---pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ty~ 426 (732)
.+-..|++++|..++++..+. -+. |+ ..+++.|...|...|++++|..++++.... | -.|+ ..+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778999999998876642 112 22 357899999999999999999998876533 2 2233 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 427 PALSVFCNNGDVDKACSVEEHMLE-----HGV-YPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~-----~gv-~pd~~-ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.|=..|...|++++|..++++..+ .|- .|+.. +.+.|-.++...++.++|..++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999887653 232 13332 3345555666778888999999888764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.26 Score=50.15 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALS 430 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~ 430 (732)
..+.. +-..+.+.|++++|...|++..... +-+...|..+-.+|.+.|++++|...+++..+. .| +...|..+-.
T Consensus 5 ~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 5 QELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34444 5567778888888888888777653 236777888888888888888888888776654 33 3566777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 004743 431 VFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~ 450 (732)
+|...|++++|...|+...+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 78888888888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.35 Score=50.63 Aligned_cols=97 Identities=13% Similarity=-0.025 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...|..+-..|.+.|++++|...|++..... |+ ...|..+-.+|.+.|++++|...++...+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778888999999999999999987653 44 47888899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. ..+...|..+-.+|...|++++|...|++..+.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 64 346788899999999999999999999998876
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.57 Score=44.29 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR--------------LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd--------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
...+..+-..+...|++++|...|.+.....- .|+ ...|..+-.+|.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566677788899999999999999876421 121 267777888899999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
. ..+...|..+-.+|...|++++|...|++....
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 346778888889999999999999999998766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.22 Score=54.81 Aligned_cols=127 Identities=10% Similarity=-0.009 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (732)
.|.. +-..|.+.|++++|...|++.....-.-. ...|..+-.+|.+.|++++|...+++..+..
T Consensus 270 ~~~~-~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKE-KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHH-HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3444 55778889999999999998876421111 5788888889999999999999998887653
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHH
Q 004743 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKL 483 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~-l~~~M 483 (732)
+-+...|..+-.+|...|++++|...|+...+. .| +...|..+-.++.+.|+.+++.. ++..|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235677777888888999999999999888764 34 34466667777777777776553 34444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.72 E-value=1.7 Score=44.88 Aligned_cols=225 Identities=8% Similarity=0.014 Sum_probs=147.5
Q ss_pred hhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 004743 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC--- 236 (732)
Q Consensus 162 k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g--~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~--- 236 (732)
+....++|+++++.+... .|+ +...||.-=..+...| ++++++++++.+....-+ +...|+.--..+
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LAS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQI 116 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CcH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHH
Confidence 444556899999988553 122 2356777767777778 999999999999976422 334454433333
Q ss_pred -HhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChh--HHHHHHHHHHHc
Q 004743 237 -SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEKENL 313 (732)
Q Consensus 237 -~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~--~A~~lf~eM~~~ 313 (732)
...+ ..++.++++..++ .+.+. .-.|-..|+.---. +.+.|.++ +++..++.|.+.
T Consensus 117 ~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 117 MELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHHHHh
Confidence 3111 2267888888885 44433 33355556555545 55667777 999999999876
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccC------HHHHHHHHHHHHhCCCCCCH
Q 004743 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA------FQRGFEIYEKMCLDEVPMNE 387 (732)
Q Consensus 314 gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~------~~~A~~lf~~M~~~gi~pd~ 387 (732)
... |-.. |+. --..+.+.+. ++++++.++++.... +-|.
T Consensus 176 d~~-N~sA--------------------------------W~~-R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~ 220 (306)
T 3dra_A 176 DLK-NNSA--------------------------------WSH-RFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNP 220 (306)
T ss_dssp CTT-CHHH--------------------------------HHH-HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCH
T ss_pred CCC-CHHH--------------------------------HHH-HHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCc
Confidence 321 1122 222 1111222232 788999999888764 4588
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~-A~~l~~~M~~~g--~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
..|+-+-..+.+.|+..+ +..+..+....+ -..+...+..+...|++.|+.++|.++++.+.+
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999888988888554 445665554432 124567788899999999999999999999875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.31 Score=49.52 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (732)
+...+..+-..+...|++++|...|++..+. .| +...|..+-..|.+.|++++|.+.++...+.. .-+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567788888899999999999999988765 34 67788888889999999999999999887653 23567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 004743 465 RVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 465 ~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+|...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.26 Score=57.15 Aligned_cols=136 Identities=8% Similarity=-0.040 Sum_probs=99.6
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHH
Q 004743 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV---------PMN------------EASLTAVGRMAMSMGDGDMAF 407 (732)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi---------~pd------------~~ty~~LI~~~~~~g~~~~A~ 407 (732)
|+........+...-+.|++++|.++|+.+..... .|+ ..+|...++..-+.|..+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 44443333367777888999999999999886420 142 346888888888899999999
Q ss_pred HHHHHHHHc-C-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 408 DMVKRMKSL-G-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 408 ~l~~~M~~~-g-~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+|....+. + ..+.+....+.|...+ .++.+.|..+|+...+. ..-+...|...++.....|+.+.|..+|++...
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999998876 2 3344444444444222 35699999999998876 333556667888888889999999999999887
Q ss_pred c
Q 004743 486 S 486 (732)
Q Consensus 486 ~ 486 (732)
.
T Consensus 533 ~ 533 (679)
T 4e6h_A 533 K 533 (679)
T ss_dssp T
T ss_pred h
Confidence 6
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.57 Score=41.96 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=89.2
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChH
Q 004743 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVD 439 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~ 439 (732)
-.+++++|++.|++..+.| .|+.. |-..|...+.+++|++.|++-.+.| +...+..|=..|.. .++.+
T Consensus 7 ~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 3457889999999999988 34443 5566667788899999999988875 45566666666777 78999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 004743 440 KACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~l~~~M~~~ 486 (732)
+|.+.|+...+.| +...+..|=..|.. .++.++|...|++-.+.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999999886 56677777777777 78999999999988776
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.29 Score=52.25 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=50.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD---------------EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-R 421 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---------------gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d 421 (732)
+-..|.+.|++++|.+.|++..+. --+-+..+|..+-.+|.+.|++++|.+.+++..+. .| +
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~ 306 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSN 306 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cchh
Confidence 446677778888888877766541 00112345555555555566666666555555443 22 2
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 422 LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...|..+-.+|...|+.++|.+.|++..+
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34444455555555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.18 Score=55.85 Aligned_cols=116 Identities=7% Similarity=0.002 Sum_probs=87.0
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+.+.|++++|...|++..+. .|+ +...|+. +-..|.+.|++++|.+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~-------------------------------~~~~~~~-lg~~~~~~g~~~~A~~ 61 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPS-------------------------------NAIYYGN-RSLAYLRTECYGYALG 61 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCc-------------------------------cHHHHHH-HHHHHHHhcCHHHHHH
Confidence 88899999999999987765 232 2234445 7788999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHH--HHhcCChHHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE 446 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~--~~~~g~~~~A~~l~~ 446 (732)
.+++..+.. +-+..+|..+-.+|...|++++|.+.|++..+.. |+ ...+..+-.+ +.+.|++++|.++++
T Consensus 62 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 62 DATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998864 3467889999999999999999999999987652 33 3344444444 788899999999988
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=2.8 Score=44.07 Aligned_cols=233 Identities=9% Similarity=-0.065 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCcccCCCC-ChhhHHHHhhhccccchhhcccCCCCCcccc
Q 004743 204 RGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (732)
Q Consensus 204 ~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~~~~~~~k~g-~~~~A~~~~~~~~~~s~em~~~~g~~d~~ty 281 (732)
.+.-++|+++++.+.... |+ ...|+.-=..+. ..| .+++++..++ .+... ..++-..|
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~aW 126 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQVW 126 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHHHH
Confidence 344567899999988653 33 344555444444 345 4788888885 33332 22244445
Q ss_pred cccccccccccccccc-C-ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhH--HH
Q 004743 282 DYGSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD--EI 357 (732)
Q Consensus 282 n~LI~~~~~~~~~~~~-g-~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn--~~ 357 (732)
+.--.. +.+. + +.++++.+++.+.+.. ...|. .|+ ..
T Consensus 127 ~hR~wl------L~~l~~~~~~~EL~~~~k~L~~d----pkNy~-----------------------------AW~~R~w 167 (349)
T 3q7a_A 127 HHRLLL------LDRISPQDPVSEIEYIHGSLLPD----PKNYH-----------------------------TWAYLHW 167 (349)
T ss_dssp HHHHHH------HHHHCCSCCHHHHHHHHHHTSSC----TTCHH-----------------------------HHHHHHH
T ss_pred HHHHHH------HHHhcCCChHHHHHHHHHHHHhC----CCCHH-----------------------------HHHHHHH
Confidence 544333 3333 4 6788888888886542 22221 121 11
Q ss_pred HHHHHHhcc-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCChhhH
Q 004743 358 RLSEDAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 358 lI~~~~k~g-----~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~-------~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
++..+.+.. .+.++++.++++.+.. +-|...|+-.-..+.+.+. ++++++.+.+..... .-|...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 333222221 1348999999998865 4588889888888888776 688888888877652 3456777
Q ss_pred HHHHHHHHhcCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 004743 426 GPALSVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 426 ~~lI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~l~ 480 (732)
+-+-..+.+.|.. ....++..++...+ -.+....+..|.+.|...|+.++|.+++
T Consensus 246 ~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 246 NYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7766666666653 23333333333221 1467888899999999999999999999
Q ss_pred HHHHhccCCCChhHHHH
Q 004743 481 HKLRTSVRKVSPSTADV 497 (732)
Q Consensus 481 ~~M~~~~~~~~p~t~~~ 497 (732)
+.+.+....+..+-|+-
T Consensus 326 ~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 326 EKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHHTTCGGGHHHHHH
T ss_pred HHHHhhhChHHHHHHHH
Confidence 99986633333334443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.28 Score=41.80 Aligned_cols=77 Identities=16% Similarity=-0.005 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
|.+.|++..+.. +.+...|..+-..|...|++++|...|++..... +.+...|..+-..|...|+.++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555554432 2345666666666667777777777776665542 1224455555556666666666666665554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.43 Score=43.49 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=18.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCL 380 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~ 380 (732)
.=..+.+.|++++|.+.|.+...
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44667788999999998887664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.31 Score=43.15 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EE 457 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~-pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~ 457 (732)
.++..+-..|...|++++|...+++.....-. ++ ..++..+-..|...|++++|.+.+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46778888899999999999999887654111 11 247778888899999999999999887643 1111 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
..+..+-..+...|++++|...+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 46777788889999999999999886543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.46 E-value=1.9 Score=38.93 Aligned_cols=98 Identities=18% Similarity=0.139 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC---------CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-------GI---------NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-------g~---------~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
..+...-..+.+.|++++|...|.+.... .- .| +...|..+-.+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556667788999999999999887654 00 12 235778888899999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. ..+...|..+-.+|...|++++|...|++....
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 64 345778889999999999999999999998776
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.18 Score=52.91 Aligned_cols=124 Identities=9% Similarity=-0.016 Sum_probs=64.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~------------------ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~ 419 (732)
+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...+++..+.. .
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 556677889999999999987654 34433 67777777778888888888887766542 2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH-HHhcCChHHHHHHHHHHHhc
Q 004743 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRV-SVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 420 pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~-~~~~g~~~~A~~l~~~M~~~ 486 (732)
-+...|..+-.+|...|++++|...|+...+. .|+.. .+..|-.. ....+..+++..+|..|...
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 24566777777777888888888877776533 34332 22333222 12344556666666666543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.87 Score=36.21 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.|..+-..+...|++++|...+++..+.. +.+...|..+-..|.+.|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444445555555555555555544331 11233444444455555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.04 E-value=1.3 Score=48.97 Aligned_cols=175 Identities=9% Similarity=0.026 Sum_probs=96.5
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhcc---------CCCC--C-hhhhHHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK---------DWSI--D-NQDADEIRLSE 361 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~---------g~~p--d-~~tyn~~lI~~ 361 (732)
+.+.|+++.|..+|++-... |+....- .. -+...+...++..+..+ +..+ + ...|-. .+..
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~--~~-y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~-y~~~ 295 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLS--LY-YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN-HLNY 295 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHH--HH-HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHH--HH-HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH-HHHH
Confidence 56778999999999998887 6554332 10 00000000111111110 0001 0 122333 4455
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCh
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~--~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
+-+.+.++.|..+|+.....+ .+...|. +.+...+ .++.+.|..+|+...+.- |+ ...+...++...+.|+.
T Consensus 296 ~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCH
Confidence 555667888888888772222 2333343 3333322 235788888887766542 33 22344556666677888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
+.|..+|+... -....|...++.=...|+.+.+..+++++..
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888762 2466677777766777887777777776654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.39 Score=40.01 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 388 ~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
..|..+-..+...|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.++...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444455555555555555555544431 12334444444555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.64 Score=39.48 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 405 ~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
+|...|++..+.. +-+...|..+-..|...|++++|...|+...+.. ..+...|..+-.+|...|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777766542 2356778888889999999999999999998764 3356788888899999999999999999876
Q ss_pred hc
Q 004743 485 TS 486 (732)
Q Consensus 485 ~~ 486 (732)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.38 Score=53.43 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEV-PMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GI- 418 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi-~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~- 418 (732)
.++++ |...|...|++++|..++++... .|- -|+ ..+|+.|-..|...|++++|..++++-.+. |-
T Consensus 352 ~~~~n-La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 352 RLLSI-ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45667 88999999999999999988663 232 243 367999999999999999999999876532 31
Q ss_pred CCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 419 NPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 419 ~pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.|++ .+.+.+-.++...+..++|..+|..+.+.
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 34555666777788999999999988753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.47 Score=39.49 Aligned_cols=67 Identities=12% Similarity=0.191 Sum_probs=54.9
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd 421 (732)
...|.. +-..+.+.|++++|.+.|++..... +.+...|..+-.+|...|++++|.+.+++..+. .|+
T Consensus 4 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 70 (111)
T 2l6j_A 4 FEKQKE-QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TST 70 (111)
T ss_dssp HHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSS
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC
Confidence 334555 6678889999999999999988753 346788999999999999999999999998754 455
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=92.17 E-value=1.8 Score=47.21 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 387 ~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd----------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...|..+-..|.+.|++++|...|++..+. .|+ ...|..+-.+|.+.|++++|...++..++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346777788899999999999999988764 233 47888888999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 64 346778888999999999999999999998765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=92.14 E-value=1.7 Score=46.19 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~--------------g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (732)
.|..+-..+.+.|++++|.+.|++..+. ...| +...|..+-.+|.+.|++++|.+.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666777889999999999999987751 0222 35678888889999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.-+...|..+-.+|...|++++|...|++..+.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 235778888889999999999999999998776
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=91.95 E-value=1.4 Score=34.99 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV 431 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~ 431 (732)
.|.. +-..+.+.|++++|...|++..... +.+..+|..+-..+...|++++|...+++..+.. |+ ...+..+-..
T Consensus 11 ~~~~-la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYN-LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 4444 6677889999999999999988753 3467889999999999999999999999987652 43 3444444333
Q ss_pred H
Q 004743 432 F 432 (732)
Q Consensus 432 ~ 432 (732)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=14 Score=38.70 Aligned_cols=225 Identities=11% Similarity=-0.005 Sum_probs=137.3
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g-~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~ 238 (732)
+.+.....+|+++++.+.... |+ +..+||.-=..+...| ++++++++++.+....- -+...|+.--..+.
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~- 134 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD- 134 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH-
T ss_pred HHhCCCCHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH-
Confidence 344556678999999986542 21 2356777666666677 59999999999997643 35667776655555
Q ss_pred cccCCcccCCC-C-ChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChh--------HHHHHHH
Q 004743 239 AAVGVVKPAKS-G-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFN 308 (732)
Q Consensus 239 ~~~~~~~~~k~-g-~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~--------~A~~lf~ 308 (732)
+. + +.++++..++ .+.+. ...|-..|+--.-. +.+.|.++ ++++.++
T Consensus 135 ---------~l~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 135 ---------RISPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp ---------HHCCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------HhcCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHH
Confidence 22 3 5678888774 34433 33355556544333 33334444 8888888
Q ss_pred HHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccC-------HHHHHHHHHHHHhC
Q 004743 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYA-------FQRGFEIYEKMCLD 381 (732)
Q Consensus 309 eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~-------~~~A~~lf~~M~~~ 381 (732)
++.+.... |-..| +. .-..+.+.+. ++++++.++++...
T Consensus 192 k~I~~dp~-N~SAW--------------------------------~~-R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 192 EMLRVDGR-NNSAW--------------------------------GW-RWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHCTT-CHHHH--------------------------------HH-HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHH--------------------------------HH-HHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 88776321 22222 22 1122222222 67888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcC
Q 004743 382 EVPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 382 gi~pd~~ty~~LI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----~~pd~~ty~~lI~~~~~~g 436 (732)
. +-|...|+-+-..+.+.|+. ........++...+ -.+......-|...|+..|
T Consensus 238 ~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 316 (349)
T 3q7a_A 238 I-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQN 316 (349)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTT
T ss_pred C-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcC
Confidence 3 45888898877777777664 22222222222221 1355667777889999999
Q ss_pred ChHHHHHHHHHHHHC
Q 004743 437 DVDKACSVEEHMLEH 451 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~ 451 (732)
+.++|.++++.+.+.
T Consensus 317 ~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 317 RVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=90.85 E-value=4.6 Score=35.81 Aligned_cols=116 Identities=11% Similarity=-0.017 Sum_probs=87.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
..-.+++++|...|.+-.+.|. |+.. |=..|...+.+++|++
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~-~~a~-------------------------------------lg~~y~~g~~~~~A~~ 46 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNE-MFGC-------------------------------------LSLVSNSQINKQKLFQ 46 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-TTHH-------------------------------------HHHHTCTTSCHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHcCCC-Hhhh-------------------------------------HHHHHHcCCCHHHHHH
Confidence 3445567889998888877762 2111 1123344567788999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHH
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVE 445 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~----~g~~~~A~~l~ 445 (732)
.|++-.+.| +...+..|-..|.. .++.++|++.|++-.+.| +...+..|=..|.. .++.++|.+.|
T Consensus 47 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 47 YLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 999998886 67788888888888 899999999999988875 45566666677777 78999999999
Q ss_pred HHHHHCCC
Q 004743 446 EHMLEHGV 453 (732)
Q Consensus 446 ~~M~~~gv 453 (732)
+...+.|.
T Consensus 121 ~~Aa~~g~ 128 (138)
T 1klx_A 121 EKACRLGS 128 (138)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 99888763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=90.75 E-value=4 Score=37.70 Aligned_cols=106 Identities=8% Similarity=0.025 Sum_probs=69.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR 421 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~-p-----d~-----~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~pd 421 (732)
.=..+.+.|++++|.+.|++..+-.-. | +. ..|+.+-.++.+.|++++|...+++-.+. -+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 335677889999999999987764211 1 22 37888888888888888888888876653 12555
Q ss_pred h-hhH----HHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 004743 422 L-RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEAL 463 (732)
Q Consensus 422 ~-~ty----~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~ty~~L 463 (732)
. ..| ...=.++...|++++|.+.|+...+ .|+.+........
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3 344 4555666677777777777776643 2454444443333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=90.72 E-value=1.3 Score=36.68 Aligned_cols=62 Identities=8% Similarity=0.063 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (732)
Q Consensus 386 d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (732)
+...|..+-..|...|++++|...|++..+.. +-+...|..+-.+|...|++++|.+.|++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555555554432 112334444555555555555555555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=90.65 E-value=4.7 Score=42.62 Aligned_cols=147 Identities=8% Similarity=-0.044 Sum_probs=96.0
Q ss_pred CCChhhhHHHHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--CHHHHHHHHHHHHH-
Q 004743 348 SIDNQDADEIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS---MG--DGDMAFDMVKRMKS- 415 (732)
Q Consensus 348 ~pd~~tyn~~lI~~~~k-----~g~~~~A~~lf~~M~~~gi~pd-~~ty~~LI~~~~~---~g--~~~~A~~l~~~M~~- 415 (732)
..|...|.. .+.+... .....+|..+|++..+. .|+ ...|..+.-+|.. .+ .......+-..+..
T Consensus 191 p~~~~Aydl-~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTN-FYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 345555555 4433322 23468999999998875 354 3444444333331 11 11111111111111
Q ss_pred ---cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 416 ---LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 416 ---~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
..-..+..+|..+-..+...|++++|...+++....+ |+...|..+=..+.-.|+.++|.+.+++-... .|.+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 1234567788877777777899999999999999886 88888877777888999999999999888777 7888
Q ss_pred hHHHHHHHH
Q 004743 493 STADVIAKW 501 (732)
Q Consensus 493 ~t~~~I~~~ 501 (732)
.||..+...
T Consensus 344 ~t~~~~~~l 352 (372)
T 3ly7_A 344 NTLYWIENG 352 (372)
T ss_dssp HHHHHHHHS
T ss_pred ChHHHHhCc
Confidence 887665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=89.78 E-value=1.3 Score=36.84 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004743 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~ 415 (732)
..|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|.+.|++..+
T Consensus 8 ~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 8 FTRYA-LAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445 7788899999999999999988764 33567899999999999999999999988654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=1.7 Score=47.32 Aligned_cols=83 Identities=11% Similarity=-0.019 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHc---CCCC---C-hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHH
Q 004743 401 GDGDMAFDMVKRMKSL---GINP---R-LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV 466 (732)
Q Consensus 401 g~~~~A~~l~~~M~~~---g~~p---d-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li~~ 466 (732)
|++++|..++++..+. -+-| + ..+++.|-..|...|++++|..++++..+- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5677777777665432 1222 2 367777777777778888877777776532 2 1233 3457777777
Q ss_pred HHhcCChHHHHHHHHHH
Q 004743 467 SVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M 483 (732)
|...|++++|..++++-
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 78888888888877653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=1.2 Score=48.56 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHHHHHHcC---CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLG---INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL 464 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g---~~pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li 464 (732)
+.|++++|..++++..+.. +.|+ ..+++.|...|...|++++|..++++..+- | -.|+ ..+|+.|-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3455666666665554321 1122 345666666666666666666666655431 1 1122 23456666
Q ss_pred HHHHhcCChHHHHHHHHH
Q 004743 465 RVSVEAGKGDRVYYLLHK 482 (732)
Q Consensus 465 ~~~~~~g~~~~A~~l~~~ 482 (732)
..|...|++++|..++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 666666666666666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.11 E-value=1.6 Score=45.53 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------------------hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 389 ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~------------------ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.|..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555666777899999999999986654 34433 777888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 54 336788899999999999999999999987654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=88.86 E-value=4.4 Score=47.08 Aligned_cols=77 Identities=13% Similarity=0.203 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 004743 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (732)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~ 432 (732)
.|.. |-..+.+.++++.|.+.|..+.. |..+...|...|+.+...++-+.....|. |+....+|
T Consensus 683 ~W~~-la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~ 746 (814)
T 3mkq_A 683 KWRA-LGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAY 746 (814)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHH
Confidence 3444 66667777777777777776653 44555556666666665555544444432 34445555
Q ss_pred HhcCChHHHHHHH
Q 004743 433 CNNGDVDKACSVE 445 (732)
Q Consensus 433 ~~~g~~~~A~~l~ 445 (732)
.+.|++++|.+++
T Consensus 747 ~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 747 WIAGDIQGAKDLL 759 (814)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 5566665555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=88.78 E-value=13 Score=40.82 Aligned_cols=210 Identities=8% Similarity=-0.051 Sum_probs=124.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCC
Q 004743 169 QYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248 (732)
Q Consensus 169 A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k 248 (732)
+..+|++..... +.+...|-..+.-+.+.|+++.|..+|++.... |.....-. .|+... +
T Consensus 198 v~~~ye~al~~~-------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~-------e 257 (493)
T 2uy1_A 198 MHFIHNYILDSF-------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVM-------D 257 (493)
T ss_dssp HHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHT-------T
T ss_pred HHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhc-------c
Confidence 466788775432 122467888888889999999999999999987 54332211 233110 1
Q ss_pred CCCh-hhHHHHhhhccccchhhcccCCC-C---CccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccc
Q 004743 249 SGSG-MRTLDTFEVSTMNSTELGDSRDM-D---NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (732)
Q Consensus 249 ~g~~-~~A~~~~~~~~~~s~em~~~~g~-~---d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~ 323 (732)
.+.+ ++..+.+... +.... +. . ....|-..+.- .-+.+.++.|..+|+.. . .|. .++.
T Consensus 258 ~~~~~~~l~~~~~~~-----~~~~~-~~~~~~~~~~lw~~y~~~------~~r~~~~~~AR~i~~~A-~---~~~-~~~~ 320 (493)
T 2uy1_A 258 EEAVYGDLKRKYSMG-----EAESA-EKVFSKELDLLRINHLNY------VLKKRGLELFRKLFIEL-G---NEG-VGPH 320 (493)
T ss_dssp CTHHHHHHHHHTC----------------CHHHHHHHHHHHHHH------HHHHHCHHHHHHHHHHH-T---TSC-CCHH
T ss_pred hhHHHHHHHHHHHhh-----ccchh-hhhcccccHHHHHHHHHH------HHHcCCHHHHHHHHHHh-h---CCC-CChH
Confidence 1111 1111111000 00000 00 0 11224333444 44566788899999877 2 232 2332
Q ss_pred hhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004743 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (732)
Q Consensus 324 ~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~ 403 (732)
+....+ .+...+ .++.+.|..+|+...+.- +-+...|...++...+.|+.
T Consensus 321 ---------------------------v~i~~A-~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 321 ---------------------------VFIYCA-FIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp ---------------------------HHHHHH-HHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred ---------------------------HHHHHH-HHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCH
Confidence 111112 333222 336999999999988753 22344567778888889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 404 DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 404 ~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
+.|..+|+... -....|...+..=...|+.+.+.++++.+..
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999862 2467788888877788999999998888763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=88.75 E-value=5.1 Score=37.03 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------h-----hhHHHHHHHHHhcCChHHHHHHHHHHHHC-----
Q 004743 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------L-----RSYGPALSVFCNNGDVDKACSVEEHMLEH----- 451 (732)
Q Consensus 390 y~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd--------~-----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----- 451 (732)
+...-..+.+.|++++|...|++..+. .|+ . ..|+.+=.++.+.|++++|...++..++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555677899999999999987754 233 2 27888888999999999999999998874
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 452 GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 452 gv~pd~-~ty----~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+.|+. ..| ...=.++...|++++|...|++-.+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 225664 456 6777888999999999999998754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=88.71 E-value=1 Score=48.94 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--C-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hh
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLD--E-VPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LR 423 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--g-i~pd----~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ 423 (732)
.+..+.+.|++++|.+++++..+. . +.|+ ..+++.|...|...|++++|+.++++.... | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 456677889999999999988753 1 2222 457999999999999999999999987643 2 2344 46
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 424 SYGPALSVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (732)
+|+.|=..|...|+.++|..++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88889999999999999999998766
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=1.7 Score=47.32 Aligned_cols=86 Identities=7% Similarity=-0.085 Sum_probs=68.3
Q ss_pred hccCHHHHHHHHHHHHh---CCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhhHHHHH
Q 004743 364 KKYAFQRGFEIYEKMCL---DEVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPR-LRSYGPAL 429 (732)
Q Consensus 364 k~g~~~~A~~lf~~M~~---~gi~p---d-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~ty~~lI 429 (732)
..|++++|..++++..+ .-+.| + ..+++.|..+|...|++++|..++++.... | -.|+ ..+|+.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35688999999987664 22223 3 368999999999999999999999987643 3 2344 46889999
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 004743 430 SVFCNNGDVDKACSVEEHML 449 (732)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~ 449 (732)
..|...|+.++|..++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.46 E-value=5.9 Score=37.24 Aligned_cols=102 Identities=10% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.....|+++.|.++.+++ -+...|..|-+.....|+++-|.+.|..... |..+.--|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999998887 3688999999999999999999999987543 4677777888999988
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 004743 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (732)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M 483 (732)
-..+-+.-...| -++.-...+.-.|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 877766666555 2466666777889999999998765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=85.24 E-value=3.4 Score=48.02 Aligned_cols=101 Identities=11% Similarity=0.070 Sum_probs=67.9
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~ 442 (732)
...|++++|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+.. |..+...|...|+.++..
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 4456666666665433 4678899999999999999999999987643 455666666677777766
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
++-+.....|- ++.-..+|.+.|++++|.+++.++.
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 66655555542 2444455666777777777776653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=84.96 E-value=4.1 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~-ty~~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (732)
..+.+.|++++|.+.|++..+.. +-+.. .|..+-.+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45566777777777777776643 22445 6677777777777777777777776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=84.70 E-value=3 Score=33.79 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=31.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..+...|++++|...|++..+.. +-+.. .|..+-..|...|+.++|.+.|+...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455666666666666655542 11233 4555555566666666666666666544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=80.92 E-value=50 Score=34.13 Aligned_cols=228 Identities=8% Similarity=-0.047 Sum_probs=127.4
Q ss_pred HHHhcCCHH-HHHHHHHHHHHcCCCCCHH-HHHH---HHHHHHhcccCCcccC-CCCChhhHHHHhhhccccchhhcccC
Q 004743 200 MCSKRGDVM-GAIRLYDKAQREGIKLGQY-HYNV---LLYLCSSAAVGVVKPA-KSGSGMRTLDTFEVSTMNSTELGDSR 273 (732)
Q Consensus 200 a~~k~g~~~-~A~~lf~~M~~~Gi~pd~~-tyn~---LL~~~~~~~~~~~~~~-k~g~~~~A~~~~~~~~~~s~em~~~~ 273 (732)
...+.|.+. +|+++++.+... .|+.+ .||. +|....... .|. ....+++++..++ .+...
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~----~~~~~~~~l~~EL~~~~-------~~L~~- 103 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEK----SPEESAALVKAELGFLE-------SCLRV- 103 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHH-------HHHHH-
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccc----cchhhhHHHHHHHHHHH-------HHHHh-
Confidence 334566665 899999999854 45433 3443 222222100 000 0011455666663 22222
Q ss_pred CCCCccccccccccccccccccccC--ChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCCh
Q 004743 274 DMDNNGQLDYGSSPMIDKLESNSSY--RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (732)
Q Consensus 274 g~~d~~tyn~LI~~~~~~~~~~~~g--~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~ 351 (732)
...+-.+|+.--.. +...+ .+++++.+++.|.+.. ..-|
T Consensus 104 ~PKny~aW~hR~wl------L~~l~~~~~~~EL~~~~k~l~~d----prNy----------------------------- 144 (331)
T 3dss_A 104 NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD----ERNF----------------------------- 144 (331)
T ss_dssp CTTCHHHHHHHHHH------HHHCSSCCHHHHHHHHHHHHHHC----TTCH-----------------------------
T ss_pred CCCCHHHHHHHHHH------HhccCcccHHHHHHHHHHHHHhC----CCCH-----------------------------
Confidence 22244445543333 44444 4788999888887752 2222
Q ss_pred hhhHHHHHHHHHhccC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHc
Q 004743 352 QDADEIRLSEDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------------GDGDMAFDMVKRMKSL 416 (732)
Q Consensus 352 ~tyn~~lI~~~~k~g~-~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~--------------g~~~~A~~l~~~M~~~ 416 (732)
..|+. ---.+.+.|. ++++++.++++.+.. +-|...|+-.-..+.+. +.++++++.+......
T Consensus 145 ~AW~~-R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 145 HCWDY-RRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHH-HHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 22332 2222334455 588999999988865 45777887766666554 4577888888877655
Q ss_pred CCCCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCCCHHHHHH--H---HHHHHhcCChHHHHHHH
Q 004743 417 GINPRLRSYGPALSVFCNN-----------GDVDKACSVEEHMLEHGVYPEEPELEA--L---LRVSVEAGKGDRVYYLL 480 (732)
Q Consensus 417 g~~pd~~ty~~lI~~~~~~-----------g~~~~A~~l~~~M~~~gv~pd~~ty~~--L---i~~~~~~g~~~~A~~l~ 480 (732)
. +-|...|+-+-..+.+. +.++++.+.++++.+. .||. .|+. + +.+....|..+++...+
T Consensus 223 ~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l 298 (331)
T 3dss_A 223 D-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYF 298 (331)
T ss_dssp S-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHH
Confidence 2 23456666544444444 4577888888888865 4554 3332 2 12223456677788888
Q ss_pred HHHHhc
Q 004743 481 HKLRTS 486 (732)
Q Consensus 481 ~~M~~~ 486 (732)
.++.+-
T Consensus 299 ~~l~~~ 304 (331)
T 3dss_A 299 STLKAV 304 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 732 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.58 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.46 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.85 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.72 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 96.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.48 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.36 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 96.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.17 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.09 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.0 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 95.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 95.72 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.68 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.45 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 95.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 95.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.19 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 94.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 94.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.01 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 93.85 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 93.67 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 93.65 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 93.64 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 93.58 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 93.18 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 92.44 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 92.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 92.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 89.64 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 89.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 88.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 87.02 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 86.94 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 84.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.92 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=2.2e-07 Score=95.89 Aligned_cols=289 Identities=10% Similarity=-0.085 Sum_probs=190.1
Q ss_pred hhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 004743 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (732)
Q Consensus 161 ~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~ 240 (732)
-+.|+.++|.+.|+++.+.- | -+...|..+-..|.+.|++++|+.+|++..+.. +-+..+|..+-..|.
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~--p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~--- 78 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK--- 78 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---
T ss_pred HHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhh---
Confidence 36789999999999986541 2 234678888899999999999999999998753 234678888888888
Q ss_pred cCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCcc
Q 004743 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (732)
Q Consensus 241 ~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ 320 (732)
+.|++++|...+. ..... ...+...+...... ....+....+.................
T Consensus 79 -------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (388)
T d1w3ba_ 79 -------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQYNPDLYCV 137 (388)
T ss_dssp -------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHHCTTCTHH
T ss_pred -------hhccccccccccc-------ccccc-cccccccccccccc------ccccccccccccccccccccccccccc
Confidence 7899999999985 22222 11111111111111 223333333433333333332222221
Q ss_pred ccchhhhhhccc--cccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004743 321 MKLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (732)
Q Consensus 321 ty~~~~li~~~~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~ 398 (732)
.+.......... ..+........ ...|+.......+...+...|..++|...+++..... +-+..+|..+...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 214 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAI--ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHhh--ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhh
Confidence 111000000000 00000111111 1123333322326778888999999999999887653 335678899999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 004743 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (732)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (732)
..|++++|...+........ .+...+..+-..+.+.|+.++|.+.|++..+.. .-+...|..+-..|...|+.++|..
T Consensus 215 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 292 (388)
T d1w3ba_ 215 EARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999887643 456677778888999999999999999988753 2346788889999999999999999
Q ss_pred HHHHHHhc
Q 004743 479 LLHKLRTS 486 (732)
Q Consensus 479 l~~~M~~~ 486 (732)
.++.....
T Consensus 293 ~~~~~~~~ 300 (388)
T d1w3ba_ 293 CYNTALRL 300 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhcc
Confidence 99988776
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3.5e-07 Score=94.25 Aligned_cols=296 Identities=11% Similarity=-0.019 Sum_probs=184.4
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
..+.++.++|.+.|+...+.. | -+..+|..+...|.+.|++++|++.+..............+..........
T Consensus 43 ~~~~~~~~~A~~~~~~al~~~--p-----~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (388)
T d1w3ba_ 43 HFQCRRLDRSAHFSTLAIKQN--P-----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccc
Confidence 346789999999999986542 2 234789999999999999999999999988764332221111111111100
Q ss_pred ccCC-----------------------cccCCCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccc
Q 004743 240 AVGV-----------------------VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS 296 (732)
Q Consensus 240 ~~~~-----------------------~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~ 296 (732)
.... ......+....+...+. ..... ...+...+..+... +..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~ 181 (388)
T d1w3ba_ 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNA 181 (388)
T ss_dssp CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHH-------Hhhcc-CcchhHHHHhhccc------ccc
Confidence 0000 00002222223333331 11111 11122334444444 666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcc-ccchhhhhhcc-----ccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHH
Q 004743 297 SYRFDDLDSTFNEKENLGQFSNGH-MKLNSQLLDGR-----SNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (732)
Q Consensus 297 ~g~~~~A~~lf~eM~~~gi~Pd~~-ty~~~~li~~~-----~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~ 370 (732)
.|.+++|...+++..+. .|+.. .|. .+...+ .+.|...+....... ..+...+.. +-..+.+.|++++
T Consensus 182 ~~~~~~A~~~~~~al~~--~p~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~ 255 (388)
T d1w3ba_ 182 QGEIWLAIHHFEKAVTL--DPNFLDAYI--NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN-LACVYYEQGLIDL 255 (388)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHH--HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH-HHHHHHHTTCHHH
T ss_pred cCcHHHHHHHHHHHHHh--CcccHHHHH--HHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHH-HHHHHHHCCCHHH
Confidence 67777777777666553 24332 221 111111 122222333322211 112333444 6678888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 371 A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
|.+.|++..+.. +-+..+|..+...+...|+.++|.+.++..... .+.+...+..+...+.+.|++++|.+.|++..+
T Consensus 256 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 256 AIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999887753 335678888999999999999999999887665 445677888888899999999999999998875
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 451 HGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 451 ~gv~pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
. .|+ ...|..+-..|.+.|++++|...|++..+.
T Consensus 334 ~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 334 V--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp S--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 454 566788888899999999999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.8e-06 Score=86.30 Aligned_cols=240 Identities=10% Similarity=0.008 Sum_probs=170.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCCCcc
Q 004743 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (732)
Q Consensus 200 a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~ 279 (732)
.+.+.|++++|+..|+++.+.. +-+...|..+-..|. ..|++++|...|. ...+. ...+..
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~ 88 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISALR-------RCLEL-KPDNQT 88 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCChHHHHHHHH-------hhhcc-cccccc
Confidence 4678999999999999999753 224677888878888 7899999999995 33222 112445
Q ss_pred ccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHH
Q 004743 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (732)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (732)
.|..+... +...|++++|.+.+++.... .|+...... ........ .+...+.. .+
T Consensus 89 ~~~~la~~------~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~-~~~~~~~~---------------~~~~~~~~-~~ 143 (323)
T d1fcha_ 89 ALMALAVS------FTNESLQRQACEILRDWLRY--TPAYAHLVT-PAEEGAGG---------------AGLGPSKR-IL 143 (323)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHT--STTTGGGCC-------------------------------C-TT
T ss_pred cccccccc------ccccccccccccchhhHHHh--ccchHHHHH-hhhhhhhh---------------cccccchh-hH
Confidence 57777777 89999999999999988764 333322210 00000000 00000001 22
Q ss_pred HHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~ 438 (732)
..+.+.+..++|.+.|.+.... .-.++..++..+-..+...|++++|...|++..... +-+...|..+-..|.+.|++
T Consensus 144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 222 (323)
T d1fcha_ 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 222 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccc
Confidence 3344556778888888877653 234567888899999999999999999999987652 22466788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
++|.+.|+...+.. .-+...|..|-.+|.+.|++++|...|++..+
T Consensus 223 ~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 223 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999988753 22466788899999999999999999988654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=4.7e-05 Score=76.84 Aligned_cols=231 Identities=10% Similarity=-0.073 Sum_probs=159.8
Q ss_pred hhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 004743 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (732)
Q Consensus 160 ~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~~~ 239 (732)
..+.|+.++|.+.|+...+.. +-+..+|..+-.+|...|++++|+..|.+..+.. +-+...|..+...|.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-- 98 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT-- 98 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc--
Confidence 447899999999999986431 2245789999999999999999999999988653 224667777777888
Q ss_pred ccCCcccCCCCChhhHHHHhhhccccchhhccc-CCCCCccc-------cccccccccccccccccCChhHHHHHHHHHH
Q 004743 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQ-------LDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (732)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~-~g~~d~~t-------yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (732)
..|+.++|.+.+. +.... ........ +..+-........+...+.+.+|...|.+..
T Consensus 99 --------~~~~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 99 --------NESLQRQACEILR-------DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp --------HTTCHHHHHHHHH-------HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccccccchh-------hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 7899999999885 22211 00000000 0000000000111333455566666666554
Q ss_pred HcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004743 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (732)
Q Consensus 312 ~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~ 391 (732)
+. .|+. ++...+.. +-..+...|++++|...|++..... +-+..+|.
T Consensus 164 ~~--~p~~-----------------------------~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 210 (323)
T d1fcha_ 164 RL--DPTS-----------------------------IDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 210 (323)
T ss_dssp HH--STTS-----------------------------CCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HH--hhcc-----------------------------cccccchh-hHHHHHHHHHHhhhhcccccccccc-cccccchh
Confidence 43 1221 12233444 6677888999999999999987653 33577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
.+-..|...|++++|.+.|++..+. .|+ ...|..+-.+|.+.|+.++|.+.|++.++
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998765 344 56788888999999999999999998765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.99 E-value=0.00067 Score=68.23 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=98.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~-~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g 436 (732)
.+..+.+.|.+++|.++|+.....+.. +...|-..... +...|+.+.|..+|+.+... .+-+...|...+..+.+.|
T Consensus 140 ~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g 217 (308)
T d2onda1 140 YMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcC
Confidence 677777889999999999998876532 33334333332 34468899999999998876 3345678888999999999
Q ss_pred ChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~g-v~pd--~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+++.|..+|++..... ..|+ ...|...+..-...|+.+.+.++.+++.+.
T Consensus 218 ~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987754 4443 467888888888999999999999988765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.0019 Score=64.12 Aligned_cols=276 Identities=9% Similarity=-0.027 Sum_probs=174.4
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQ----YHYNVLL 233 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~G-i~pd~----~tyn~LL 233 (732)
.....|+.++|.+++++-.+. .|+.........++.+-..|...|++++|+..|++..+.. -.++. ..+..+.
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 345778999999999986543 2222111123467777889999999999999999887421 11222 2333344
Q ss_pred HHHHhcccCCcccCCCCChhhHHHHhhhccccchhhcccCCCC----CccccccccccccccccccccCChhHHHHHHHH
Q 004743 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (732)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~~g~~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (732)
..+. ..|++..+...+... ..+....+.. ....+..+-.. +...|+++.+...+..
T Consensus 99 ~~~~----------~~~~~~~a~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~a~~~~~~ 158 (366)
T d1hz4a_ 99 EILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARS 158 (366)
T ss_dssp HHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHHH----HHHhHhcccchhhHHHHHHHHHHHH------HHHhcchhhhHHHHHH
Confidence 4444 668888888877411 0111111111 11123344444 7788999999999988
Q ss_pred HHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCCC
Q 004743 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM 385 (732)
Q Consensus 310 M~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p 385 (732)
.....-..+... ....+.. +...+...+....+...+.+.... +..+
T Consensus 159 ~~~~~~~~~~~~----------------------------~~~~~~~-~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 209 (366)
T d1hz4a_ 159 GIEVLSSYQPQQ----------------------------QLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYHS 209 (366)
T ss_dssp HHHHTTTSCGGG----------------------------GHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHhhhhhhhh----------------------------HHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence 776532211111 1112223 445667778888888887765541 2111
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC
Q 004743 386 --NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP---RLRSYGPALSVFCNNGDVDKACSVEEHMLE----HGVYPE 456 (732)
Q Consensus 386 --d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p---d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~----~gv~pd 456 (732)
....+..+...+...|+.++|...+.......... ....+..+-..+...|+.++|...++.... .+..|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 289 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence 12346667778889999999999988755432221 234455677789999999999999988753 355554
Q ss_pred H-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 457 E-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 457 ~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
. ..+..+-..|.+.|+.++|.+.|++-..
T Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 4567777889999999999999987543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.46 E-value=0.00089 Score=67.25 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=100.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH-HHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~-~~~~~g 436 (732)
....+-+.|.+++|..+|+++...........|...+..+.+.|+.+.|.++|+...+.+- .+...|..... -+...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcc
Confidence 5667778899999999999998754333456899999999999999999999999887642 22333333222 244568
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.+.|..+|+.+... ..-+...|...++.+.+.|+.++|..+|++-...
T Consensus 184 ~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 184 DKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999999999999876 2445778999999999999999999999997765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.021 Score=57.16 Aligned_cols=231 Identities=6% Similarity=-0.052 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCcccCCCC-ChhhHHHHhhhccccchhhc
Q 004743 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELG 270 (732)
Q Consensus 193 tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~LL~~~~~~~~~~~~~~k~g-~~~~A~~~~~~~~~~s~em~ 270 (732)
.|+-+=..+.+.+..++|+++++.+.+. .|+ ...|+..-.++. ..| ++++|+..+. ...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~----------~l~~~~~eal~~~~-------~al 105 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 105 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHH----------HhCcCHHHHHHHHH-------HHH
Confidence 4455555577889999999999999985 454 445666655665 444 5889998885 332
Q ss_pred ccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC
Q 004743 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (732)
Q Consensus 271 ~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd 350 (732)
+. .-.+..+|+.+-.. +...|++++|...|+.+.+.. |+ +
T Consensus 106 ~~-~p~~~~a~~~~~~~------~~~l~~~~eAl~~~~kal~~d--p~-------------------------------n 145 (315)
T d2h6fa1 106 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AK-------------------------------N 145 (315)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TT-------------------------------C
T ss_pred HH-HHhhhhHHHHHhHH------HHhhccHHHHHHHHhhhhhhh--hc-------------------------------c
Confidence 22 22255567777777 888999999999999887752 22 2
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCChhh
Q 004743 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRS 424 (732)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~------~~~A~~l~~~M~~~g~~pd~~t 424 (732)
...|+. +-..+.+.|++++|.+.|++..+.. +-+...|+.+-..+.+.+. +++|.+.+....+.. +-+...
T Consensus 146 ~~a~~~-~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~ 222 (315)
T d2h6fa1 146 YHAWQH-RQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESA 222 (315)
T ss_dssp HHHHHH-HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred hHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHH
Confidence 344556 7778888999999999999998864 3467788877666666655 567888887766552 224566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc--C-------ChHHHHHHHHHHHhc
Q 004743 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVEA--G-------KGDRVYYLLHKLRTS 486 (732)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~-pd~~ty~~Li~~~~~~--g-------~~~~A~~l~~~M~~~ 486 (732)
|+-+-.. ......+++.+.++...+..-. .+...+..+...|... + .+++|.+++..+...
T Consensus 223 ~~~l~~l-l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~ 293 (315)
T d2h6fa1 223 WNYLKGI-LQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 293 (315)
T ss_dssp HHHHHHH-HTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 6655444 4455567888888777654322 3455666777776443 2 245566666555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.03 Score=54.83 Aligned_cols=235 Identities=14% Similarity=-0.009 Sum_probs=153.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhhccc
Q 004743 199 DMCSKRGDVMGAIRLYDKAQREGIKLG------QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (732)
Q Consensus 199 ~a~~k~g~~~~A~~lf~~M~~~Gi~pd------~~tyn~LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em~~~ 272 (732)
..+...|++++|+++|++..... |+ ...++.+-..|. ..|++++|...+... .++...
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~----------~~g~~~~A~~~~~~a----~~~~~~ 83 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQ 83 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----HHHHHh
Confidence 44678999999999999988642 32 234445555565 679999999999511 111111
Q ss_pred CCCC--CccccccccccccccccccccCChhHHHHHHHHHHHcC---CCCCccccchhhhhhccccccCCCchhhhccCC
Q 004743 273 RDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (732)
Q Consensus 273 ~g~~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g---i~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~ 347 (732)
.+-. ....+..+... +...|++..+...+.+..... ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~al~~~~~~~~~~~---------------------------- 129 (366)
T d1hz4a_ 84 HDVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQL---------------------------- 129 (366)
T ss_dssp TTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTS----------------------------
T ss_pred hcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHhcccchh----------------------------
Confidence 1111 12224444455 788899999998887754421 00000
Q ss_pred CCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 004743 348 SIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GI 418 (732)
Q Consensus 348 ~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~----g~ 418 (732)
+.. ..+.. +-..+...|+++.|...+...... +......++..+...+...++...+...+.+.... +.
T Consensus 130 -~~~~~~~~~-la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 207 (366)
T d1hz4a_ 130 -PMHEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 207 (366)
T ss_dssp -THHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred -hHHHHHHHH-HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 011 11222 556778899999999999887753 33344567777778888999999999888766543 11
Q ss_pred CCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 004743 419 NPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY---PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 419 ~pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~---pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~ 485 (732)
.+. ...+..+...+...|+.++|...++........ .....+..+-..+...|+.++|...+++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 208 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 234566667788899999999999876544322 2245566778889999999999999988753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.028 Score=55.21 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=82.5
Q ss_pred HHHHH-HhccCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh------hhH
Q 004743 358 RLSED-AKKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL------RSY 425 (732)
Q Consensus 358 lI~~~-~k~g~~~~A~~lf~~M~~----~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~------~ty 425 (732)
+...| ...|++++|.+.+++... .+-.+. ..+|..+...|...|++++|..+|++.......... ..|
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 33344 346899999999987653 222221 345788899999999999999999998765322111 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCChHHHHHHHHHHH
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEHGVY-PE---EPELEALLRVSVE--AGKGDRVYYLLHKLR 484 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~-pd---~~ty~~Li~~~~~--~g~~~~A~~l~~~M~ 484 (732)
..++..+...|+.+.|...++...+.... ++ ......|+.++-. .+.+++|...|+++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 34455667789999999999988654311 12 2345667777654 345778888776553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.022 Score=56.92 Aligned_cols=172 Identities=7% Similarity=-0.049 Sum_probs=125.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhcc-CHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-AFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g-~~~~A~ 372 (732)
+.+.+..++|+.++++..+. .|+-.+ .|+. .-..+...| ++++|+
T Consensus 53 ~~~~e~~~~Al~~~~~ai~l--nP~~~~-------------------------------a~~~-r~~~l~~l~~~~~eal 98 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIEL--NAANYT-------------------------------VWHF-RRVLLKSLQKDLHEEM 98 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHH--CTTCHH-------------------------------HHHH-HHHHHHHTTCCHHHHH
T ss_pred HHhCCchHHHHHHHHHHHHH--CCCChH-------------------------------HHHH-HHHHHHHhCcCHHHHH
Confidence 66788899999999988775 243332 2334 444555555 589999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 004743 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (732)
Q Consensus 373 ~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (732)
+.+++..+.. +-+..+|+.+-..+.+.|++++|.+.++.+.+. -+-+...|+.+-..+.+.|++++|.+.++.+.+..
T Consensus 99 ~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 99 NYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 9999987653 346789999999999999999999999998875 22357888889999999999999999999998865
Q ss_pred CCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHhccCCCCh-hHHHHHHHHHhc
Q 004743 453 VYPEEPELEALLRVSVEAGK------GDRVYYLLHKLRTSVRKVSP-STADVIAKWFNS 504 (732)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~------~~~A~~l~~~M~~~~~~~~p-~t~~~I~~~~~~ 504 (732)
.-+...|+.+-..+.+.+. .++|...+.+.... .|.. +.|.-+...+..
T Consensus 177 -p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~ 232 (315)
T d2h6fa1 177 -VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQD 232 (315)
T ss_dssp -TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTT
T ss_pred -CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHh
Confidence 2356667766555555444 57888888887665 4433 245444444543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.02 Score=50.80 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=68.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~ 439 (732)
+.|.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|...|+...+.. +-+...|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 35667888888888888877754 4467778888888888888888888888877652 234467777888888888888
Q ss_pred HHHHHHHHHHHCC
Q 004743 440 KACSVEEHMLEHG 452 (732)
Q Consensus 440 ~A~~l~~~M~~~g 452 (732)
+|.+.+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 8888888877653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.019 Score=48.22 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=53.7
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.+.+.|++++|..+|++..... +-+...|..+-.+|.+.|++++|...+....+.. +.+...|..+-.++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 3556666666666666665542 3355566666666666666666666666665542 2345556666666666666666
Q ss_pred HHHHHHHHHH
Q 004743 441 ACSVEEHMLE 450 (732)
Q Consensus 441 A~~l~~~M~~ 450 (732)
|...|+...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.027 Score=47.22 Aligned_cols=90 Identities=12% Similarity=-0.002 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
..+.+.|++++|..+|.+..+. -+-+...|..+=.+|.+.|++++|.+.+....+.. ..+...|..+-.++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 4577899999999999998876 23456778888899999999999999999999775 457888999999999999999
Q ss_pred HHHHHHHHHHhc
Q 004743 475 RVYYLLHKLRTS 486 (732)
Q Consensus 475 ~A~~l~~~M~~~ 486 (732)
+|...|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.046 Score=50.25 Aligned_cols=125 Identities=12% Similarity=0.021 Sum_probs=97.6
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.+...|+++.|.+.|.++ .+|+..+|..+=.+|...|++++|.+.|++-.+.. +-+...|..+=.+|.+.|+.++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 356789999999999864 35788889999999999999999999999987753 2346677878888999999999
Q ss_pred HHHHHHHHHHC------------CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 004743 441 ACSVEEHMLEH------------GVY--PE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (732)
Q Consensus 441 A~~l~~~M~~~------------gv~--pd-~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p 492 (732)
|.+.|+..... |+. ++ ..++..+-.++.+.|++++|.+.|...... .+.+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 99999987653 111 11 234445566789999999999999987765 4444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.11 Score=49.11 Aligned_cols=125 Identities=10% Similarity=-0.050 Sum_probs=94.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g 436 (732)
+=..|.+.|++++|.+.|++..... +-+..+|+.+-.+|.+.|++++|.+.|++..+. .|+ ..+|..+-..|...|
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGG 119 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHh
Confidence 4467888999999999999988753 346788999999999999999999999998875 344 556777888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.++|.+.|+...+.. ..+......+..++.+.+..+.+..+.......
T Consensus 120 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 120 RDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9999999999988764 223444444444555666666666666655544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.21 E-value=0.026 Score=51.48 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=70.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCh
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~~~~~~g~~ 438 (732)
+.|.+.|++++|+..|.+..... +-+...|+.+-.+|.+.|++++|...|+...+ +.|+ ..+|..+-.+|.+.|++
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~ 88 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESY 88 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCH
Confidence 56778899999999998877654 45777888888889999999999999988654 4564 56777788888888999
Q ss_pred HHHHHHHHHHHH
Q 004743 439 DKACSVEEHMLE 450 (732)
Q Consensus 439 ~~A~~l~~~M~~ 450 (732)
++|...|+...+
T Consensus 89 ~~A~~~~~~al~ 100 (201)
T d2c2la1 89 DEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.012 Score=50.29 Aligned_cols=103 Identities=8% Similarity=-0.023 Sum_probs=69.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG---DMAFDMVKRMKSLGINPRL-RSYGPALSVFC 433 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~---~~A~~l~~~M~~~g~~pd~-~ty~~lI~~~~ 433 (732)
+++.+...+++++|.+.|++....+ +.+..++..+-.++.+.++. ++|..++++.....-.|+. .+|..+=.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 6777778888888888888877754 45667777777777765544 4578888776655433432 25555666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004743 434 NNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (732)
+.|++++|.+.|+...+. .|+-.....+
T Consensus 84 ~~g~~~~A~~~~~~aL~~--~P~~~~A~~l 111 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT--EPQNNQAKEL 111 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 888888888888887764 4664443333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.057 Score=47.63 Aligned_cols=90 Identities=10% Similarity=-0.041 Sum_probs=77.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
..|.+.|++++|...|.+..+.. +-+...|..+-..|...|++++|.+.|+..++.. .-+...|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 36679999999999999988763 3356778888889999999999999999998764 345578999999999999999
Q ss_pred HHHHHHHHHHhc
Q 004743 475 RVYYLLHKLRTS 486 (732)
Q Consensus 475 ~A~~l~~~M~~~ 486 (732)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.048 Score=49.55 Aligned_cols=98 Identities=12% Similarity=-0.048 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 004743 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEAL 463 (732)
Q Consensus 385 pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~L 463 (732)
|+.-.+--.=..|.+.|++++|...|.+..... +-+...|+.+-.+|.+.|++++|...|+...+. .|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 455555555678889999999999999877663 345677888889999999999999999998754 464 6788899
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 004743 464 LRVSVEAGKGDRVYYLLHKLRT 485 (732)
Q Consensus 464 i~~~~~~g~~~~A~~l~~~M~~ 485 (732)
-.+|.+.|++++|...|++...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999997654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.031 Score=54.82 Aligned_cols=164 Identities=7% Similarity=-0.066 Sum_probs=111.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCC-hhhhHHHHHHHHHhccCHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGF 372 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~ 372 (732)
|...+++++|...|.+..+.... .+-.++ ..+|+. +-..|.+.|++++|.
T Consensus 47 y~~~~~~~~A~~~y~kA~~~~~~----------------------------~~~~~~~a~~~~~-~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 47 YRLRKELNLAGDSFLKAADYQKK----------------------------AGNEDEAGNTYVE-AYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH-HHHHHHHTTCHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHH----------------------------cCCCHHHHHHHHH-HHHHHHHhCCcHHHH
Confidence 77888999999999877543100 000011 234555 778888999999999
Q ss_pred HHHHHHHh----CCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCChHHH
Q 004743 373 EIYEKMCL----DEV-PMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 373 ~lf~~M~~----~gi-~pd~~ty~~LI~~~~-~~g~~~~A~~l~~~M~~~----g~~pd-~~ty~~lI~~~~~~g~~~~A 441 (732)
+.+++... .|- .....++..+...|- ..|++++|.+.+.+..+. +-.+. ..+|..+...|...|++++|
T Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A 177 (290)
T d1qqea_ 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence 99986553 221 112345666666664 469999999999876532 22222 45678889999999999999
Q ss_pred HHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 442 CSVEEHMLEHGVYP-----EE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 442 ~~l~~~M~~~gv~p-----d~-~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.+.|+......... .. ..|..++..+...|+.+.|...|++..+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999987653221 11 12334445667789999999999988765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.081 Score=48.47 Aligned_cols=124 Identities=7% Similarity=-0.032 Sum_probs=92.3
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
+...|+++.|.+.|.++. .| +...|++ +=..|.+.|++++|.+
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~--------------------------------~~~~~~n-lG~~~~~~g~~~~A~~ 57 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DP--------------------------------HSRICFN-IGCMYTILKNMTEAEK 57 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SC--------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CC--------------------------------CHHHHHH-HHHHHHHcCCchhHHH
Confidence 667889999998886431 12 3334445 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCCCC---hhhHHHHHHHHHhcCCh
Q 004743 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL------------GINPR---LRSYGPALSVFCNNGDV 438 (732)
Q Consensus 374 lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~------------g~~pd---~~ty~~lI~~~~~~g~~ 438 (732)
.|++-.+.. +-+...|..+-.+|.+.|+.++|.+.|++-... |+... ..++..+=.++.+.|++
T Consensus 58 ~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~ 136 (192)
T d1hh8a_ 58 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136 (192)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence 999988764 446788999999999999999999999887643 11111 13344455678999999
Q ss_pred HHHHHHHHHHHHCCCCC
Q 004743 439 DKACSVEEHMLEHGVYP 455 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~p 455 (732)
++|.+.+....+....|
T Consensus 137 ~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 137 KKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 99999999877654443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.68 E-value=0.032 Score=46.43 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=56.0
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 004743 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (732)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~ 440 (732)
.+-+.|++++|...|++..... +-+..+|..+-.++.+.|++++|...|+...+.. +-+...|..+-..|...|+.++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 4556677777777777766653 2256677777777777777777777777665542 2235566666666667777777
Q ss_pred HHHHHHHH
Q 004743 441 ACSVEEHM 448 (732)
Q Consensus 441 A~~l~~~M 448 (732)
|.+.+++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.45 E-value=0.047 Score=45.28 Aligned_cols=87 Identities=11% Similarity=-0.014 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (732)
-..+.+.|++++|...|++.... .| +...|..+-..+.+.|++++|...|+...+.. .-+...|..|-..|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 34577899999999999998876 35 47788888889999999999999999988764 3357888889999999999
Q ss_pred hHHHHHHHHHH
Q 004743 473 GDRVYYLLHKL 483 (732)
Q Consensus 473 ~~~A~~l~~~M 483 (732)
.++|.+.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.32 E-value=0.23 Score=44.91 Aligned_cols=77 Identities=9% Similarity=0.000 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----ccCCCChhHHHH
Q 004743 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-----SVRKVSPSTADV 497 (732)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~-----~~~~~~p~t~~~ 497 (732)
..+..+...+.+.|+.++|...++.+.+.. .-+...|..|+.+|.+.|+.++|.+.|++++. -+..|++.|...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 455667777888888888888888887654 45677788888888888888888888877643 334455545444
Q ss_pred HHH
Q 004743 498 IAK 500 (732)
Q Consensus 498 I~~ 500 (732)
...
T Consensus 147 ~~~ 149 (179)
T d2ff4a2 147 NER 149 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.046 Score=46.41 Aligned_cols=100 Identities=14% Similarity=0.021 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 004743 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYPEE-PELEALLRV 466 (732)
Q Consensus 391 ~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g---~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~ 466 (732)
..|++.+...+++++|.+.|+.....+ +.+..++..+-.++.+.+ +.++|.++++++....-.|+. .+|..|=.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457888889999999999999988753 235566666777777755 455799999998876544442 366777888
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCChh
Q 004743 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (732)
Q Consensus 467 ~~~~g~~~~A~~l~~~M~~~~~~~~p~ 493 (732)
|.+.|++++|...|++..+. .|...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 99999999999999999876 54443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.24 Score=46.40 Aligned_cols=117 Identities=12% Similarity=0.004 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHH
Q 004743 367 AFQRGFEIYEKMCLDEV-PM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKAC 442 (732)
Q Consensus 367 ~~~~A~~lf~~M~~~gi-~p--d~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~~~A~ 442 (732)
+.+.|+.-+++....-. .+ ...+|..+=..|.+.|++++|...|++..+. .| +..+|+.+=.+|.+.|++++|.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhh
Confidence 44556666666665422 22 2245666677888999999999999998765 34 4678888889999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+.|++..+.. .-+...|..+-.+|...|+.++|...|++..+.
T Consensus 92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998754 223557788888899999999999999988776
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.86 E-value=0.15 Score=46.26 Aligned_cols=99 Identities=9% Similarity=0.048 Sum_probs=80.1
Q ss_pred HHHHhccCHHHHHHHHHHHHhC--CCC-CC------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLD--EVP-MN------------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~--gi~-pd------------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (732)
......|++++|.+.|.+-..- |-. ++ ...+..+...+...|++++|...++.+... -
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-~ 97 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-H 97 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-C
Confidence 4567789999999999887752 321 11 135778889999999999999999999876 3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHHH
Q 004743 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHML-----EHGVYPEEPE 459 (732)
Q Consensus 419 ~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~-----~~gv~pd~~t 459 (732)
+-+...|..++.+|.+.|+.++|.+.|+++. +.|+.|...+
T Consensus 98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3467899999999999999999999999974 3599998765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.18 Score=42.59 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=60.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-----hhhHHHHHHHHH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR-----LRSYGPALSVFC 433 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~-~pd-----~~ty~~lI~~~~ 433 (732)
+.|.+.|++++|.+.|.+..+.. +.+..+|..+-.+|.+.|++++|.+.+++..+..- .+. ..+|..+=..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888877754 34677888888888888888888888887665310 011 134445555566
Q ss_pred hcCChHHHHHHHHHHHH
Q 004743 434 NNGDVDKACSVEEHMLE 450 (732)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (732)
..+++++|.+.|+.-..
T Consensus 91 ~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 66677777777665543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.43 Score=42.29 Aligned_cols=91 Identities=11% Similarity=0.032 Sum_probs=57.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDE-VPMN-------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g-i~pd-------------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
+.+.+.|++++|.+.|.+....- ..+. ..+|+.+..+|.+.|++++|...++...... +-+...|
T Consensus 21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~ 99 (170)
T d1p5qa1 21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 99 (170)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhh
Confidence 46788999999999998776431 1111 2345556666666777777777666655542 1245566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.-+-.+|...|++++|...|+...+.
T Consensus 100 ~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 100 SRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 66666666677777777777666553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.23 Score=41.90 Aligned_cols=98 Identities=16% Similarity=0.155 Sum_probs=76.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC---CC--CC-HHHHHHHHHHHH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---VY--PE-EPELEALLRVSV 468 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g---v~--pd-~~ty~~Li~~~~ 468 (732)
..|...|++++|...|.+..+.. +-+...|..+=.+|.+.|++++|.+.++.+++.. .. +. ..+|..+-..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999988763 3457788889999999999999999999987531 11 11 246777778888
Q ss_pred hcCChHHHHHHHHHHHhccCCCChhHH
Q 004743 469 EAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (732)
Q Consensus 469 ~~g~~~~A~~l~~~M~~~~~~~~p~t~ 495 (732)
..+++++|...|++-... .+.++..
T Consensus 91 ~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 899999999999887655 4555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=93.85 E-value=0.53 Score=40.81 Aligned_cols=102 Identities=17% Similarity=-0.005 Sum_probs=65.1
Q ss_pred HHHHhccCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDE----VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g----i~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~ 435 (732)
+.+.+.|++++|...|.+....- ..++.... ..... ....+|+.+-.+|.+.
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------DKKKN-------IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------HHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------Hhhhh-------HHHHHHhhHHHHHHHh
Confidence 45678899999999998876421 01111111 00000 1223566666777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|++++|.+.++...+.. ..+...|..+-.+|...|++++|...|++..+.
T Consensus 81 ~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 81 KDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77877777777776654 345677777777777788888888887777665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.3 Score=43.39 Aligned_cols=92 Identities=15% Similarity=0.005 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCC-------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSLG-INP-------------RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g-~~p-------------d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (732)
=..+.+.|++++|...|.+....- ..+ ...+|+-+-.+|.+.|++++|...++..++.. .-+...
T Consensus 20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a 98 (170)
T d1p5qa1 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKG 98 (170)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhh
Confidence 346788999999999998876541 111 12456667788999999999999999998764 337888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|..+-.+|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 99 LSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=93.65 E-value=0.67 Score=40.13 Aligned_cols=95 Identities=6% Similarity=-0.187 Sum_probs=52.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 004743 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (732)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (732)
..+.+.|++.+|...|.+....- |... ...-.....-... ....+|+-+-.+|.+.|+++
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~-------~~~~~~~Nla~~~~~l~~~~ 84 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN-------IEISCNLNLATCYNKNKDYP 84 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh-------HHHHHHhhHHHHHHHhcccc
Confidence 35567888888888888766431 1100 0000000000111 12346677778888999999
Q ss_pred HHHHHHHHHHhccCCCChh-H-HHHHHHHHhchHHHHhc
Q 004743 475 RVYYLLHKLRTSVRKVSPS-T-ADVIAKWFNSKEAARLG 511 (732)
Q Consensus 475 ~A~~l~~~M~~~~~~~~p~-t-~~~I~~~~~~~~~~~a~ 511 (732)
+|++.+++..+. .|.-. . +..-..+...+...+|.
T Consensus 85 ~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~ 121 (153)
T d2fbna1 85 KAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAK 121 (153)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHH
Confidence 999999887765 33322 3 34455555555554444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.64 E-value=0.35 Score=47.58 Aligned_cols=238 Identities=7% Similarity=-0.109 Sum_probs=133.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHH---HHHHHHhcccCCcccCCCCChhhHHHHhhhccccchhh
Q 004743 194 LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH-YNV---LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (732)
Q Consensus 194 yn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~t-yn~---LL~~~~~~~~~~~~~~k~g~~~~A~~~~~~~~~~s~em 269 (732)
+..++...-+....++|+++++...+. .|+..+ |+. ++..+... +......|.+++|+..+. ..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~---~~~~~~~~~~~~al~~~~-------~~ 99 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETE---KSPEESAALVKAELGFLE-------SC 99 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHH-------HH
Confidence 444444444444458999999999864 466543 332 22222200 000112344667777774 22
Q ss_pred cccCCCCCcccccccccccccccccccc--CChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCC
Q 004743 270 GDSRDMDNNGQLDYGSSPMIDKLESNSS--YRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (732)
Q Consensus 270 ~~~~g~~d~~tyn~LI~~~~~~~~~~~~--g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~ 347 (732)
... ...+...|..+..+ +... +++++|...+.+..+.. |+.
T Consensus 100 l~~-~pk~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~al~~~--~~~---------------------------- 142 (334)
T d1dcea1 100 LRV-NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD--ERN---------------------------- 142 (334)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHTCSSCCHHHHHHHHHHHHHHC--TTC----------------------------
T ss_pred HHh-CCCcHHHHHHhhHH------HHHhccccHHHHHHHHHHHHhhC--chh----------------------------
Confidence 221 22233345544444 3333 45788998888877652 221
Q ss_pred CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----------------------
Q 004743 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM---------------------- 405 (732)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~---------------------- 405 (732)
...|...+-..+-..+..++|...+++..... +-|...|+.+-..+...|+.++
T Consensus 143 ---~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 218 (334)
T d1dcea1 143 ---FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (334)
T ss_dssp ---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred ---hhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 11111212234445666777777776666543 2355566666666666555443
Q ss_pred --------HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004743 406 --------AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 406 --------A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (732)
+...+...... -.++...+..+...+...|+.++|.+.+.+..... .-+...|..+-..|...|+.++|.
T Consensus 219 ~~l~~~~~a~~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~ 296 (334)
T d1dcea1 219 FFTDPNDQSAWFYHRWLLG-RAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETL 296 (334)
T ss_dssp HHHCSSCSHHHHHHHHHHS-CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHH
T ss_pred HHhcchhHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHH
Confidence 33333332222 22334455556667777788888888888766433 123456677888889999999999
Q ss_pred HHHHHHHhc
Q 004743 478 YLLHKLRTS 486 (732)
Q Consensus 478 ~l~~~M~~~ 486 (732)
+.+++..+.
T Consensus 297 ~~~~~ai~l 305 (334)
T d1dcea1 297 QYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=93.58 E-value=0.053 Score=52.71 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=78.4
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHH
Q 004743 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKA 441 (732)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-ty~~lI~~~~~~g~~~~A 441 (732)
-+.|++++|.+.+++-.+.. +-|...+..|...||..|++++|.+.++...+. .|+.. .+..+-..+. +
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~-------a 76 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK-------A 76 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-------H
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH-------h
Confidence 36799999999999998764 568899999999999999999999999998765 45533 3332222222 2
Q ss_pred HHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 442 CSVEEHMLEH----GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 442 ~~l~~~M~~~----gv--~p-d~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
.....++... .+ .| +...+......+.+.|+.++|..++.+..+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2222332221 11 12 2233344455678889999999999988765
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.18 E-value=0.91 Score=45.12 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=43.7
Q ss_pred hhhhhcCCchHHHHHHHHhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004743 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (732)
Q Consensus 159 ~~~k~~~~~~A~~v~~~M~~~g~~~~~~~~p~~~tyn~lI~a~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~~~~ 237 (732)
.+.+.+..+.|..+|..+ .-|..++..+.+.+++..|.+++.... +..+|.-+..+|.
T Consensus 23 ~c~~~~lye~A~~lY~~~---------------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhC---------------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 555888999999999988 568899999999999999988876542 5678888888887
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.44 E-value=0.53 Score=41.39 Aligned_cols=107 Identities=12% Similarity=-0.062 Sum_probs=54.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 004743 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (732)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g 436 (732)
.-..+.+.|++++|.+.|.+.... +..........+.. -+.| +...|..+=.+|.+.|
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA---------KLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG---------GGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH---------HhChhhHHHHHHHHHHHHhhc
Confidence 345677889999999888776431 00000000000000 0111 2234444445556666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
++++|...+...++.. .-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 92 ~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 92 DWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666666666655433 233445555666666666666666666655554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.12 E-value=0.024 Score=56.63 Aligned_cols=100 Identities=7% Similarity=-0.095 Sum_probs=67.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCh
Q 004743 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~ty~~lI~~~~~~g~~ 438 (732)
..+...+..+++...+....... +++...+..+...+...|+.++|...+.+.... .| +...|..+-..|...|+.
T Consensus 216 ~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 292 (334)
T d1dcea1 216 QNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYE 292 (334)
T ss_dssp HHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGH
T ss_pred HHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCH
Confidence 34455566667777777666543 345556777777888888888888888765543 23 345667777788888999
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 004743 439 DKACSVEEHMLEHGVYPEEP-ELEALL 464 (732)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~-ty~~Li 464 (732)
++|.+.++...+. .|+.. -|..|-
T Consensus 293 ~eA~~~~~~ai~l--dP~~~~y~~~L~ 317 (334)
T d1dcea1 293 KETLQYFSTLKAV--DPMRAAYLDDLR 317 (334)
T ss_dssp HHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CcccHHHHHHHH
Confidence 9999999988764 46533 334443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=92.09 E-value=0.74 Score=40.46 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=59.5
Q ss_pred HHHHhccCHHHHHHHHHHHHh---CCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 004743 360 SEDAKKYAFQRGFEIYEKMCL---DEVPMN-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (732)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~---~gi~pd-----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty 425 (732)
..+.+.|++++|...|.+-.. ....++ ...|+.+-.+|.+.|++++|...++..... -+.+...|
T Consensus 23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-~p~~~~a~ 101 (168)
T d1kt1a1 23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-DSANEKGL 101 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-ccchHHHH
Confidence 567889999999999977553 111111 123455556667777777777777776654 23445666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
..+-.+|...|++++|.+.|+...+.
T Consensus 102 ~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 102 YRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66667777777777777777777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.64 E-value=2.2 Score=37.02 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HH-HHHHHHHhchHHHHh
Q 004743 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TA-DVIAKWFNSKEAARL 510 (732)
Q Consensus 457 ~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~~~~~~p~-t~-~~I~~~~~~~~~~~a 510 (732)
...|..+-.+|.+.|++++|+..+.+..+. .|.-. .| ..-..+...+...+|
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A 130 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQA 130 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHH
Confidence 345666667788888888888888887765 33222 32 334445555544444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=89.09 E-value=3.4 Score=35.23 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcC-CCCC----------hhhHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCH---
Q 004743 397 AMSMGDGDMAFDMVKRMKSLG-INPR----------LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----GVYPEE--- 457 (732)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g-~~pd----------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----gv~pd~--- 457 (732)
+...|++++|...|++-.... -.|+ ...|+.+-.+|.+.|++++|.+-+++..+. ...++.
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 344566666666666554321 1111 245666666677777777777766665431 122221
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 004743 458 --PELEALLRVSVEAGKGDRVYYLLHKLR 484 (732)
Q Consensus 458 --~ty~~Li~~~~~~g~~~~A~~l~~~M~ 484 (732)
..|+.+-.+|...|+.++|...|++..
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 235556677888888888888887754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=88.88 E-value=0.23 Score=47.93 Aligned_cols=122 Identities=11% Similarity=-0.029 Sum_probs=76.1
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 004743 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (732)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~li~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (732)
.-+.|++++|...|++-.+.. |+ |...+.. +...||..|++++|.+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~-------------------------------d~~ar~~-La~lL~~~G~~e~A~~ 51 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PK-------------------------------DASLRSS-FIELLCIDGDFERADE 51 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TT-------------------------------CHHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CC-------------------------------CHHHHHH-HHHHHHHCCCHHHHHH
Confidence 346799999999999887752 32 2233345 8999999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004743 374 IYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (732)
Q Consensus 374 lf~~M~~~gi~pd-~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (732)
.|+...+.. |+ ...+..+...+...+..+++..-...-...+-.++...+......+...|+.++|.++++...+.
T Consensus 52 ~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 52 QLMQSIKLF--PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 999988753 43 34444444433332222222111110000111223344455566788889999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=87.02 E-value=6.4 Score=33.85 Aligned_cols=92 Identities=12% Similarity=-0.016 Sum_probs=72.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc---CCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 004743 394 GRMAMSMGDGDMAFDMVKRMKSL---GINP-----------RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (732)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~---g~~p-----------d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (732)
-..+.+.|++++|...|.+.... ...+ ....|+-+-.+|.+.|++++|...++...... ..+...
T Consensus 22 G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a 100 (168)
T d1kt1a1 22 GTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKG 100 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHH
Confidence 35677899999999999775532 1111 12345556667889999999999999988764 567888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
|..+-.+|...|++++|...|++....
T Consensus 101 ~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 101 LYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999875
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=86.94 E-value=4.9 Score=34.11 Aligned_cols=92 Identities=7% Similarity=-0.033 Sum_probs=68.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-
Q 004743 359 LSEDAKKYAFQRGFEIYEKMCLDE-VPMN----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR- 421 (732)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g-i~pd----------~~ty~~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~pd- 421 (732)
-..+.+.|++++|.+.|++-.+-. -.|+ ...|+.+-.+|.+.|++++|..-+.+..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 345667799999999999887521 1122 468999999999999999999999887642 22222
Q ss_pred ----hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004743 422 ----LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (732)
Q Consensus 422 ----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (732)
...|+.+=.+|...|+.++|.+.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456667889999999999999988653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.16 E-value=3.1 Score=35.22 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=69.4
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 004743 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------GDGDMAFDMVKRMKSLGINPR-LRSYGPALS 430 (732)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~----------g~~~~A~~l~~~M~~~g~~pd-~~ty~~lI~ 430 (732)
|-+.+.+++|.+.|+...+.. +-|..+|..+=.+|... +.+++|...|++..+. .|+ ..+|..+=.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 446677899999999988764 44666777666666643 4456788888777654 343 456665555
Q ss_pred HHHhcC-----------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 004743 431 VFCNNG-----------DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (732)
Q Consensus 431 ~~~~~g-----------~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l~~~M~~~ 486 (732)
+|...| .+++|.+.|+...+. .|+...|..-|..+ .+|.+++.+..+.
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQ 142 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 555443 245566666655543 46666665555443 3445555555444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.92 E-value=11 Score=36.71 Aligned_cols=197 Identities=5% Similarity=-0.093 Sum_probs=97.9
Q ss_pred CCCChhhHHHHhhhccccchhhcccCCCCCccccccccccccccccccccCChhHHHHHHHHHHHcCCCCCccccchhhh
Q 004743 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (732)
Q Consensus 248 k~g~~~~A~~~~~~~~~~s~em~~~~g~~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~gi~Pd~~ty~~~~l 327 (732)
+.|.++.|..++. .+ --|.-++.. +.+.+++..|.+++.... +.-+|. .+
T Consensus 26 ~~~lye~A~~lY~-------~~---------~d~~rl~~~------~v~l~~~~~avd~~~k~~------~~~~~k--~~ 75 (336)
T d1b89a_ 26 DEKMYDAAKLLYN-------NV---------SNFGRLAST------LVHLGEYQAAVDGARKAN------STRTWK--EV 75 (336)
T ss_dssp ---CTTTHHHHHH-------HT---------TCHHHHHHH------HHTTTCHHHHHHHHHHHT------CHHHHH--HH
T ss_pred HCCCHHHHHHHHH-------hC---------CCHHHHHHH------HHhhccHHHHHHHHHHcC------CHHHHH--HH
Confidence 6677778887774 11 124445555 677777777777665331 111222 22
Q ss_pred hhccccccCCCchhhhccCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004743 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (732)
Q Consensus 328 i~~~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty~~LI~~~~~~g~~~~A~ 407 (732)
...+.+....-...+...+...+...... ++..|-..|.+++...+++..... -.++...++-|+..|++.+. .
T Consensus 76 ~~~l~~~~e~~la~i~~~~~~~~~d~l~~-~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~----~ 149 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMCGLHIVVHADELEE-LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP----Q 149 (336)
T ss_dssp HHHHHHTTCHHHHHHTTTTTTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH----H
T ss_pred HHHHHhCcHHHHHHHHHHHhhcCHHHHHH-HHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh----H
Confidence 22222111111112222222223333334 778888889988888888876532 25677788889998888643 3
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH----------HCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 004743 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML----------EHGVYPEEPELEALLRVSVEAGKGDRVY 477 (732)
Q Consensus 408 ~l~~~M~~~g~~pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~----------~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (732)
++.+.++... +.....-++..|-+.+-+.++.-++..|. ++ .++.......++.+.+.++.+...
T Consensus 150 kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~e~~~ 224 (336)
T d1b89a_ 150 KMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANVELYY 224 (336)
T ss_dssp HHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCChHHHH
Confidence 3444444321 11122234444444444444444443322 11 122223344555566666666665
Q ss_pred HHHHHHHh
Q 004743 478 YLLHKLRT 485 (732)
Q Consensus 478 ~l~~~M~~ 485 (732)
+++....+
T Consensus 225 ~~i~~yL~ 232 (336)
T d1b89a_ 225 RAIQFYLE 232 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
|