Citrus Sinensis ID: 004774

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-

MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLGPCL

cccccccccccEEEEcEEEEEEEEEEcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEcccccccccEEEEEEEEccccccEEEEEEEEcccccccEEEEEEEcccccccccEEEEEEEccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccEEcccccccccccccEEccccEEEcccHHHHHHHHHHHHcccEEEEEEEEcccccEEEEccccccccccccHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccHHHHHHHcccccccEEccccccccccEEEEEcccccccccccEEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHccccEEEEEcEEEEccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEccccccc

cccccccccccEEEEEccEEEEEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccEccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEHHHHcccccccccEEEccccccccccccEEEEEEEEEcccccHHHHcccccccccccccccccccccccEEEEEEEcccccccccccEcccccEcccccHHHHHHHHHHHHccEEEEEccEEccEEEEEEcccccccccccccHHHHHHHHHHcccEEEEEEEcccccccccEEccccccccccHHHHHHHccccEEEEEccccccccccEEEEEEEEEEEEcccEEEEEEccccccccEEEEEEcccEccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHccccccccccHcccccccccEEEHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHccEEEEEEEEEEccccccccccccccHcccHHHHHHHHHHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEEEEEccccccccccccccccccccccccccccHHHHHHHHcccEEEEEEccccccc

maagddsdkeKVIYLHGDLDLKIirarrlpnmdmMSEHLRRCFtacdvcktpapthetfqdddgvrhtskiirkskiitsdpyvtvvVPQATVARTRVlknsqepvwnehfniplahplsnleiqvkdddvfgaqiigtaaipahtiATGELISRWydiiapsgsppkpgasiqlelkftpcdknplyrqgiagdpehkgvrnayfplrkgshvrlyqdahvtegilpeipldggklykpgtcweDICHAISEAHHLIYIVGWSVFHKIKLIreqtrplprggdltlGELLKYKSEEGVRVLLLVWDdktshdklgvktpgvmathdeeTKKFFKhssvncvlapryassklsyfkQQIVGTIFTHHQKCVLvdtqasgnnrkITAFIGgidlcdgrydtpehrlfrdldtvfkddfhnptypigtkaprepwhdlhcrldgpaaYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRIswilspelslktngttivprddnvvrvskeddpenwhVQIFRsidsgsvkgfpksiediddqslICAKDVVIDKSIQTAYIQAIRSAQHFIYIENqyflgssyawpsyknagadnliPMELALKIASKIRANERFAVYVIipmwpegdpktnTVQEILFWQSQTMQMMYSVVAQELREmqvdahpqdylSFYClgkreeapkdvlanngdkmlgisFSNFFMRIEGSQKCCHIHIfansflgpcl

maagddsdkekviylhgdldlkiirARRLPNMDMMSEHLRRCFTACDVCKTPapthetfqdddgvrhTSKIIrkskiitsdpyvtvVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRqgiagdpehkgVRNAYFPLRKGSHVRLYQDAHVtegilpeipldGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIreqtrplprggdLTLGELLKYKSEEGVRVLLLvwddktshdklgvktpgvMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVdtqasgnnrkITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPtypigtkaprepWHDLHCRLDGPAAYDVLINFEQRWrkatklteltfkfkrvshwrddYLIKIGRiswilspelslktngttivprddnvvrvskeddpenwhvqifrsidsgsvkgFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPmwpegdpkTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLGPCL

MAAGDDSDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHtskiirkskiitsDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDiiapsgsppkpgasiQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLGPCL

***********VIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIA************QLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRV******ENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLG***

*************YLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKT***********************SKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIA***********IQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLGPC*

********KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLGPCL

********KEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ***************KIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANSFLGPCL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		731	2.2.26 [Sep-21-2011]
Q9C5Y0		868	Phospholipase D delta OS=	yes	no	0.935	0.788	0.721	0.0
P93733		1083	Phospholipase D beta 1 OS	no	no	0.874	0.590	0.537	0.0
Q9T053		858	Phospholipase D gamma 1 O	no	no	0.868	0.740	0.503	0.0
Q9T052		866	Phospholipase D gamma 3 O	no	no	0.879	0.742	0.492	0.0
O23078		927	Phospholipase D beta 2 OS	no	no	0.861	0.679	0.501	0.0
Q9T051		856	Phospholipase D gamma 2 O	no	no	0.868	0.741	0.485	0.0
P93400		808	Phospholipase D alpha 1 O	N/A	no	0.774	0.700	0.482	1e-158
Q41142		808	Phospholipase D alpha 1 O	N/A	no	0.774	0.700	0.469	1e-156
O04865		809	Phospholipase D alpha 1 O	N/A	no	0.774	0.699	0.477	1e-155
P86387		808	Phospholipase D alpha 1 O	N/A	no	0.774	0.700	0.471	1e-155

>sp\|Q9C5Y0\|PLDD1_ARATH Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2	Back alignment and function desciption

 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/697 (72%), Positives = 573/697 (82%), Gaps = 13/697 (1%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPSSSIYIMT 364

Query: 359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
           +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct: 365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query: 419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
           NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct: 425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query: 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
            LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct: 485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query: 539 PKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAG 598
           PK  ++ + Q L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AG
Sbjct: 545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAG 604

Query: 599 ADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVV 658
           ADNLIPMELALKI SKIRA ERFAVYV+IP+WPEGDPK+  VQEIL+WQSQTMQMMY V+
Sbjct: 605 ADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVI 664

Query: 659 AQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNG 695
           A+EL+ +Q DAHP DYL+FYCLGKRE+ P D+ A NG
Sbjct: 665 AKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNG 701

Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. May be involved in phosphatidic acid accumulation in the dehydration stress response and in the transduction of hormonal and environmental signals to the microtubules cytoskeleton.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4

>sp\|P93733\|PLDB1_ARATH Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4	Back alignment and function description

>sp\|Q9T053\|PLDG1_ARATH Phospholipase D gamma 1 OS=Arabidopsis thaliana GN=PLDGAMMA1 PE=1 SV=1	Back alignment and function description

>sp\|Q9T052\|PLDG3_ARATH Phospholipase D gamma 3 OS=Arabidopsis thaliana GN=PLDGAMMA3 PE=2 SV=1	Back alignment and function description

>sp\|O23078\|PLDB2_ARATH Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=3	Back alignment and function description

>sp\|Q9T051\|PLDG2_ARATH Phospholipase D gamma 2 OS=Arabidopsis thaliana GN=PLDGAMMA2 PE=1 SV=3	Back alignment and function description

>sp\|P93400\|PLDA1_TOBAC Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2	Back alignment and function description

>sp\|Q41142\|PLDA1_RICCO Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1	Back alignment and function description

>sp\|O04865\|PLDA1_VIGUN Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1	Back alignment and function description

>sp\|P86387\|PLDA1_CARPA Phospholipase D alpha 1 OS=Carica papaya GN=PLD1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		731
338795736		865	phospholipase D delta [Litchi chinensis]	0.943	0.797	0.758	0.0
333595913		865	phospholipase D delta [Dimocarpus longan	0.945	0.798	0.759	0.0
312283027		860	unnamed protein product [Thellungiella h	0.938	0.797	0.739	0.0
23477711		849	phospholipase D delta isoform [Gossypium	0.946	0.815	0.726	0.0
22795060		849	phospholipase D delta isoform 1b [Gossyp	0.946	0.815	0.726	0.0
297798338		869	atplddelta [Arabidopsis lyrata subsp. ly	0.937	0.788	0.731	0.0
359496145		872	PREDICTED: phospholipase D delta-like [V	0.961	0.806	0.702	0.0
30690488		857	phospholipase D delta [Arabidopsis thali	0.935	0.798	0.733	0.0
30690492		693	phospholipase D delta [Arabidopsis thali	0.935	0.987	0.733	0.0
7486399		1071	hypothetical protein F4B14.60 - Arabidop	0.935	0.638	0.721	0.0

>gi\|338795736\|gb\|AEI99558.1\| phospholipase D delta [Litchi chinensis]	Back alignment and taxonomy information

 Score = 1098 bits (2839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/700 (75%), Positives = 595/700 (85%), Gaps = 10/700 (1%)

Query: 2   AAGDD-SDKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQ 60
           AAG+D S K +  YLHGDLDLKII ARRLPNMD+++ + RRCFTACD C+ P P+     
Sbjct: 3   AAGEDKSVKGQGTYLHGDLDLKIIAARRLPNMDVVASNFRRCFTACDACRPPHPSSRPPS 62

Query: 61  -DDDGVRHTSKIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPL 119
              DG    S      KIIT+DPYVTVVVPQATVARTRVLKN+Q P W+EHF IPLAHP+
Sbjct: 63  VHGDGDNKKSH----HKIITTDPYVTVVVPQATVARTRVLKNTQSPHWDEHFVIPLAHPV 118

Query: 120 SNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKF 179
            +LE QVKDDDVFGA++IG A IPA  IA G++IS W+ II   G PP+  A+I+LE+KF
Sbjct: 119 VDLEFQVKDDDVFGAELIGKAKIPASLIAAGDVISDWFPIINAKGQPPRLDAAIRLEMKF 178

Query: 180 TPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYK 239
           TPC++NPLYR G+AGDPE  GVR  YFPLRKG  + LYQDAHV  G LPE+ LDG   YK
Sbjct: 179 TPCEENPLYRHGVAGDPEQSGVRRTYFPLRKGCQLTLYQDAHVKPGQLPEVKLDGHVDYK 238

Query: 240 PGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGV 299
             TCWEDIC+AISEAHHL+YIVGWSVF+KIKLIRE TR LPRGGDLTLGELLKYKSEEGV
Sbjct: 239 ADTCWEDICYAISEAHHLVYIVGWSVFYKIKLIREPTRQLPRGGDLTLGELLKYKSEEGV 298

Query: 300 RVLLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQI 359
           R+LLLVWDDKTSHDK GVKT GVM THDEET+KFFKHSSVNCVLAPRYASSKL  FKQQ+
Sbjct: 299 RILLLVWDDKTSHDKFGVKTGGVMGTHDEETRKFFKHSSVNCVLAPRYASSKLGIFKQQV 358

Query: 360 VGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHN 419
           VGT+FTHHQKCV+VDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDL+T+F+ DFHN
Sbjct: 359 VGTMFTHHQKCVIVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLNTIFEGDFHN 418

Query: 420 PTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDDY 479
           PTYP   KAPR+PWHDLHCR+DGPAAYDVLINFEQRWRK+TK  E + KFK+VSHW DD 
Sbjct: 419 PTYPSTVKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKSTKWKEFSLKFKKVSHWHDDS 478

Query: 480 LIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFP 539
           LIKI RISWILSPELS    GTTIVP DD +VRVS E +PENWHVQ+FRSIDSGS+KGFP
Sbjct: 479 LIKIERISWILSPELSSTREGTTIVPTDDRIVRVSDEKNPENWHVQVFRSIDSGSLKGFP 538

Query: 540 KS--IEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNA 597
           KS  I+ I++Q+L+CAKD+VI+KSIQ AYIQAIRSAQH+IYIENQYFLGSSYAWPSYK+A
Sbjct: 539 KSINIKQIEEQNLLCAKDLVIEKSIQAAYIQAIRSAQHYIYIENQYFLGSSYAWPSYKDA 598

Query: 598 GADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSV 657
           GADNLIPMELALKIASKIRA ERFAVY+IIPMWPEGDPK NTVQEILFWQSQTMQMMY++
Sbjct: 599 GADNLIPMELALKIASKIRAKERFAVYIIIPMWPEGDPKDNTVQEILFWQSQTMQMMYNI 658

Query: 658 VAQELREMQ--VDAHPQDYLSFYCLGKREEAPKDVLANNG 695
           VAQ L++MQ  +D+HPQDYL+FYCLG REE PKD    NG
Sbjct: 659 VAQALKDMQMDMDSHPQDYLNFYCLGNREELPKDASNTNG 698

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|333595913\|gb\|AEF58504.1\| phospholipase D delta [Dimocarpus longan]	Back alignment and taxonomy information

>gi\|312283027\|dbj\|BAJ34379.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|23477711\|gb\|AAN34820.1\| phospholipase D delta isoform [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|22795060\|gb\|AAN05432.1\| phospholipase D delta isoform 1b [Gossypium hirsutum]	Back alignment and taxonomy information

>gi\|297798338\|ref\|XP_002867053.1\| atplddelta [Arabidopsis lyrata subsp. lyrata] gi\|297312889\|gb\|EFH43312.1\| atplddelta [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|359496145\|ref\|XP_002270350.2\| PREDICTED: phospholipase D delta-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|30690488\|ref\|NP_849501.1\| phospholipase D delta [Arabidopsis thaliana] gi\|12484119\|gb\|AAG53975.1\|AF322228_1 phospholipase D delta [Arabidopsis thaliana] gi\|15987418\|gb\|AAL11978.1\|AF306345_1 phospholipase D [Arabidopsis thaliana] gi\|110742679\|dbj\|BAE99251.1\| phospholipase D [Arabidopsis thaliana] gi\|332661171\|gb\|AEE86571.1\| phospholipase D delta [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30690492\|ref\|NP_849502.1\| phospholipase D delta [Arabidopsis thaliana] gi\|332661170\|gb\|AEE86570.1\| phospholipase D delta [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|7486399\|pir\|\|T04689 hypothetical protein F4B14.60 - Arabidopsis thaliana gi\|3805845\|emb\|CAA21465.1\| putative protein [Arabidopsis thaliana] gi\|7270531\|emb\|CAB81488.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		731
TAIR\|locus:2125314		868	PLDDELTA "phospholipase D delt	0.956	0.805	0.694	2.1e-274
TAIR\|locus:2064607		1083	PLDBETA1 "phospholipase D beta	0.585	0.395	0.525	1.8e-185
TAIR\|locus:2137045		858	PLDGAMMA1 "phospholipase D gam	0.544	0.463	0.513	7.2e-176
TAIR\|locus:2137035		866	PLDGAMMA3 "phospholipase D gam	0.549	0.464	0.496	8.1e-175
TAIR\|locus:2126001		927	PLDBETA2 "phospholipase D beta	0.551	0.434	0.506	2.4e-173
TAIR\|locus:2137025		856	PLDGAMMA2 "phospholipase D gam	0.616	0.526	0.456	2.4e-166
UNIPROTKB\|P86387		808	PLD1 "Phospholipase D alpha 1"	0.508	0.460	0.490	1.4e-144
TAIR\|locus:2093227		810	PLDALPHA1 "phospholipase D alp	0.508	0.459	0.489	1.8e-142
TAIR\|locus:2035211		810	PLDALPHA2 "phospholipase D alp	0.508	0.459	0.477	4.4e-141
TAIR\|locus:2145452		820	PLDALPHA3 "phospholipase D alp	0.503	0.448	0.465	3.2e-136

TAIR\|locus:2125314 PLDDELTA "phospholipase D delta" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2638 (933.7 bits), Expect = 2.1e-274, P = 2.1e-274
 Identities = 495/713 (69%), Positives = 566/713 (79%)

Query:    10 EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHXX 69
             E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct:     7 EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query:    70 XXXXXXXXXXXDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
                        DPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct:    67 NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query:   130 DVFGAQIIGTAAIPAHTIATGELISRWYDXXXXXXXXXXXXXXXQLELKFTPCDKNPLYR 189
             DVFGAQIIGTA IP   IA+GE IS W+                 +++KFTP D+   YR
Sbjct:   127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query:   190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
              GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct:   187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query:   250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
             AISEAHH+IYIVGWS+FHKIKL+RE T+ +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct:   247 AISEAHHMIYIVGWSIFHKIKLVRE-TK-VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query:   310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
             TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct:   305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPSSSIYIMT 364

Query:   359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
             +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct:   365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query:   419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
             NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct:   425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query:   479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
              LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct:   485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query:   539 PKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAG 598
             PK  ++ + Q L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AG
Sbjct:   545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAG 604

Query:   599 ADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVV 658
             ADNLIPMELALKI SKIRA ERFAVYV+IP+WPEGDPK+  VQEIL+WQSQTMQMMY V+
Sbjct:   605 ADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVI 664

Query:   659 AQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNGDKML-GISFSNFFMRI 710
             A+EL+ +Q DAHP DYL+FYCLGKRE+ P D+ A NG  +    +F  F + +
Sbjct:   665 AKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYV 717

GO:0003824 "catalytic activity" evidence=IEA

GO:0004630 "phospholipase D activity" evidence=IEA;ISS;IMP;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0046473 "phosphatidic acid metabolic process" evidence=IMP

GO:0012501 "programmed cell death" evidence=IMP

GO:0009409 "response to cold" evidence=IEP;IMP

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

TAIR\|locus:2064607 PLDBETA1 "phospholipase D beta 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137045 PLDGAMMA1 "phospholipase D gamma 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137035 PLDGAMMA3 "phospholipase D gamma 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2126001 PLDBETA2 "phospholipase D beta 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2137025 PLDGAMMA2 "phospholipase D gamma 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P86387 PLD1 "Phospholipase D alpha 1" [Carica papaya (taxid:3649)]	Back alignment and assigned GO terms

TAIR\|locus:2093227 PLDALPHA1 "phospholipase D alpha 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035211 PLDALPHA2 "phospholipase D alpha 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145452 PLDALPHA3 "phospholipase D alpha 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5Y0	PLDD1_ARATH	3, ., 1, ., 4, ., 4	0.7216	0.9357	0.7880	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.4.4	0.946
3rd Layer	3.1.4	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.7__496__AT4G35790.1	annotation not avaliable (869 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		731
PLN03008		868	PLN03008, PLN03008, Phospholipase D delta	0.0
PLN02270		808	PLN02270, PLN02270, phospholipase D alpha	0.0
PLN02352		758	PLN02352, PLN02352, phospholipase D epsilon	1e-152
cd09198		180	cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat	1e-109
cd09139		176	cd09139, PLDc_pPLD_like_1, Catalytic domain, repea	6e-84
cd09200		211	cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat	4e-74
cd09197		178	cd09197, PLDc_pPLDalpha_1, Catalytic domain, repea	3e-71
cd04015		158	cd04015, C2_plant_PLD, C2 domain present in plant	5e-68
cd09142		208	cd09142, PLDc_pPLD_like_2, Catalytic domain, repea	4e-66
cd09199		211	cd09199, PLDc_pPLDalpha_2, Catalytic domain, repea	2e-53
cd09104		147	cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, re	6e-26
cd09141		183	cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domai	3e-25
PLN02866		1068	PLN02866, PLN02866, phospholipase D	2e-20
cd09138		146	cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domai	3e-20
cd00030		102	cd00030, C2, C2 domain	9e-17
smart00239		101	smart00239, C2, Protein kinase C conserved region	8e-15
cd09105		146	cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, re	2e-14
cd09140		146	cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain	8e-14
pfam00168		85	pfam00168, C2, C2 domain	1e-12
cd09844		182	cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2,	2e-12
cd09842		151	cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1,	2e-12
cd04036		119	cd04036, C2_cPLA2, C2 domain present in cytosolic	2e-11
cd08373		127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	6e-10
cd09845		182	cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2,	7e-10
cd00275		128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-09
cd04021		125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	1e-08
cd09843		145	cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1,	1e-08
cd08391		121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-08
PLN02866		1068	PLN02866, PLN02866, phospholipase D	6e-08
cd04038		145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	2e-07
cd00276		134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-07
COG5038		1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	3e-07
cd04050		105	cd04050, C2B_Synaptotagmin-like, C2 domain second	1e-06
cd04040		115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	6e-06
cd09143		142	cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain	6e-06
cd04045		120	cd04045, C2C_Tricalbin-like, C2 domain third repea	1e-05
cd04027		127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-05
cd04009		133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-05
cd08383		117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	5e-05
COG1502		438	COG1502, Cls, Phosphatidylserine/phosphatidylglyce	7e-05
COG5038		1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-04
cd04052		111	cd04052, C2B_Tricalbin-like, C2 domain second repe	1e-04
cd04024		128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-04
cd04044		124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-04
cd04013		146	cd04013, C2_SynGAP_like, C2 domain present in Ras	1e-04
cd04042		121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-04
cd09110		154	cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o	2e-04
cd04018		151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	3e-04
cd04054		121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	3e-04
cd04035		123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	6e-04
cd04030		127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	7e-04
cd04043		126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	7e-04
cd08681		118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	7e-04
cd04031		125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	0.002
cd08405		136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	0.002
cd04041		111	cd04041, C2A_fungal, C2 domain first repeat; funga	0.003
cd08400		126	cd08400, C2_Ras_p21A1, C2 domain present in RAS p2	0.004

>gnl\|CDD\|178585 PLN03008, PLN03008, Phospholipase D delta	Back alignment and domain information

 Score = 1074 bits (2779), Expect = 0.0
 Identities = 503/697 (72%), Positives = 573/697 (82%), Gaps = 13/697 (1%)

Query: 10  EKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTS 69
           E V+ LHGDLDLKI++ARRLPNMDM SEHLRR FTAC+ C  P  T +    D G     
Sbjct: 7   EDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDK 66

Query: 70  KIIRKSKIITSDPYVTVVVPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDD 129
            I    K+ITSDPYVTVVVPQAT+ARTRVLKNSQEP+W+E FNI +AHP + LE QVKDD
Sbjct: 67  NIRSHRKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDD 126

Query: 130 DVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCDKNPLYR 189
           DVFGAQIIGTA IP   IA+GE IS W+ ++  SG PPK   +I +++KFTP D+   YR
Sbjct: 127 DVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYR 186

Query: 190 QGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICH 249
            GIAGDPE +GVR  YFP+RKGS VRLYQDAHV +G LP I LD GK+Y+ G CWEDIC+
Sbjct: 187 CGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICY 246

Query: 250 AISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDK 309
           AISEAHH+IYIVGWS+FHKIKL+RE    +PR  D+TLGELLKYKS+EGVRVLLLVWDDK
Sbjct: 247 AISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDK 304

Query: 310 TSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLAPRYASSKLSYFKQQ----------- 358
           TSHDK G+KTPGVM THDEET+KFFKHSSV CVL+PRYASSKL  FKQQ           
Sbjct: 305 TSHDKFGIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMT 364

Query: 359 IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFH 418
           +VGT+FTHHQKCVLVDTQA GNNRK+TAFIGG+DLCDGRYDTPEHR+  DLDTVFKDDFH
Sbjct: 365 VVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRYDTPEHRILHDLDTVFKDDFH 424

Query: 419 NPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWRDD 478
           NPT+P GTKAPR+PWHDLHCR+DGPAAYDVLINFEQRWRKAT+  E + + K  +HW+DD
Sbjct: 425 NPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDD 484

Query: 479 YLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGF 538
            LI+IGRISWILSP      +GT+I+P DD  V VSKEDDPENWHVQIFRSIDSGSVKGF
Sbjct: 485 ALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544

Query: 539 PKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAG 598
           PK  ++ + Q L CAK +V+DKSIQTAYIQ IRSAQHFIYIENQYFLGSSYAWPSY++AG
Sbjct: 545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAG 604

Query: 599 ADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPKTNTVQEILFWQSQTMQMMYSVV 658
           ADNLIPMELALKI SKIRA ERFAVYV+IP+WPEGDPK+  VQEIL+WQSQTMQMMY V+
Sbjct: 605 ADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVI 664

Query: 659 AQELREMQVDAHPQDYLSFYCLGKREEAPKDVLANNG 695
           A+EL+ +Q DAHP DYL+FYCLGKRE+ P D+ A NG
Sbjct: 665 AKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNG 701

Length = 868

>gnl\|CDD\|165912 PLN02270, PLN02270, phospholipase D alpha	Back alignment and domain information

>gnl\|CDD\|215202 PLN02352, PLN02352, phospholipase D epsilon	Back alignment and domain information

>gnl\|CDD\|197294 cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat 1, of plant beta-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|197237 cd09139, PLDc_pPLD_like_1, Catalytic domain, repeat 1, of plant phospholipase D and similar proteins	Back alignment and domain information

>gnl\|CDD\|197296 cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat 2, of plant beta-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|197293 cd09197, PLDc_pPLDalpha_1, Catalytic domain, repeat 1, of plant alpha-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)	Back alignment and domain information

>gnl\|CDD\|197240 cd09142, PLDc_pPLD_like_2, Catalytic domain, repeat 2, of plant phospholipase D and similar proteins	Back alignment and domain information

>gnl\|CDD\|197295 cd09199, PLDc_pPLDalpha_2, Catalytic domain, repeat 2, of plant alpha-type phospholipase D	Back alignment and domain information

>gnl\|CDD\|197203 cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins	Back alignment and domain information

>gnl\|CDD\|197239 cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins	Back alignment and domain information

>gnl\|CDD\|215467 PLN02866, PLN02866, phospholipase D	Back alignment and domain information

>gnl\|CDD\|197236 cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins	Back alignment and domain information

>gnl\|CDD\|175973 cd00030, C2, C2 domain	Back alignment and domain information

>gnl\|CDD\|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)	Back alignment and domain information

>gnl\|CDD\|197204 cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins	Back alignment and domain information

>gnl\|CDD\|197238 cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain, repeat 1, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2	Back alignment and domain information

>gnl\|CDD\|215765 pfam00168, C2, C2 domain	Back alignment and domain information

>gnl\|CDD\|197302 cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, of vertebrate phospholipase D1	Back alignment and domain information

>gnl\|CDD\|197300 cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, of vertebrate phospholipase D1	Back alignment and domain information

>gnl\|CDD\|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)	Back alignment and domain information

>gnl\|CDD\|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin	Back alignment and domain information

>gnl\|CDD\|197303 cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, of vertebrate phospholipase D2	Back alignment and domain information

>gnl\|CDD\|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)	Back alignment and domain information

>gnl\|CDD\|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase	Back alignment and domain information

>gnl\|CDD\|197301 cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, of vertebrate phospholipase D2	Back alignment and domain information

>gnl\|CDD\|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins	Back alignment and domain information

>gnl\|CDD\|215467 PLN02866, PLN02866, phospholipase D	Back alignment and domain information

>gnl\|CDD\|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)	Back alignment and domain information

>gnl\|CDD\|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin	Back alignment and domain information

>gnl\|CDD\|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>gnl\|CDD\|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins	Back alignment and domain information

>gnl\|CDD\|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2	Back alignment and domain information

>gnl\|CDD\|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins	Back alignment and domain information

>gnl\|CDD\|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>gnl\|CDD\|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins	Back alignment and domain information

>gnl\|CDD\|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)	Back alignment and domain information

>gnl\|CDD\|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins	Back alignment and domain information

>gnl\|CDD\|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>gnl\|CDD\|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins	Back alignment and domain information

>gnl\|CDD\|175980 cd04013, C2_SynGAP_like, C2 domain present in Ras GTPase activating protein (GAP) family	Back alignment and domain information

>gnl\|CDD\|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>gnl\|CDD\|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins	Back alignment and domain information

>gnl\|CDD\|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin	Back alignment and domain information

>gnl\|CDD\|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4	Back alignment and domain information

>gnl\|CDD\|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain	Back alignment and domain information

>gnl\|CDD\|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins	Back alignment and domain information

>gnl\|CDD\|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group	Back alignment and domain information

>gnl\|CDD\|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins	Back alignment and domain information

>gnl\|CDD\|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins	Back alignment and domain information

>gnl\|CDD\|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7	Back alignment and domain information

>gnl\|CDD\|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group	Back alignment and domain information

>gnl\|CDD\|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		731
PLN03008		868	Phospholipase D delta	100.0
PLN02270		808	phospholipase D alpha	100.0
PLN02352		758	phospholipase D epsilon	100.0
KOG1329		887	consensus Phospholipase D1 [Lipid transport and me	100.0
PLN02866		1068	phospholipase D	100.0
PRK12452		509	cardiolipin synthetase; Reviewed	100.0
PRK01642		483	cls cardiolipin synthetase; Reviewed	100.0
PRK11263		411	cardiolipin synthase 2; Provisional	100.0
COG1502		438	Cls Phosphatidylserine/phosphatidylglycerophosphat	100.0
PRK09428		451	pssA phosphatidylserine synthase; Provisional	100.0
PHA02820		424	phospholipase-D-like protein; Provisional	100.0
PHA03003		369	palmytilated EEV membrane glycoprotein; Provisiona	100.0
PRK05443		691	polyphosphate kinase; Provisional	99.91
TIGR03705		672	poly_P_kin polyphosphate kinase 1. Members of this	99.9
cd04015		158	C2_plant_PLD C2 domain present in plant phospholip	99.89
cd04016		121	C2_Tollip C2 domain present in Toll-interacting pr	99.82
cd04013		146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.77
cd08379		126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.77
cd04042		121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.77
cd08682		126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.77
cd08400		126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.74
cd08401		121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.74
cd04022		127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.72
cd08681		118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.72
cd08678		126	C2_C21orf25-like C2 domain found in the Human chro	99.71
cd04019		150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.71
cd08378		121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.7
cd08376		116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.68
cd04054		121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.68
cd04033		133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.68
cd08377		119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.68
PHA02820		424	phospholipase-D-like protein; Provisional	99.68
cd08677		118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.67
cd08381		122	C2B_PI3K_class_II C2 domain second repeat present	99.67
cd04014		132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.67
cd04044		124	C2A_Tricalbin-like C2 domain first repeat present	99.67
cd04024		128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.66
cd04036		119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.66
cd04028		146	C2B_RIM1alpha C2 domain second repeat contained in	99.65
cd08391		121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.65
cd08685		119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.65
cd08395		120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.65
cd04025		123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.64
cd08375		136	C2_Intersectin C2 domain present in Intersectin. A	99.63
cd08373		127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.63
cd04046		126	C2_Calpain C2 domain present in Calpain proteins.	99.62
cd08385		124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.61
cd08688		110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.61
KOG1030		168	consensus Predicted Ca2+-dependent phospholipid-bi	99.61
cd08387		124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.61
cd08393		125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.6
cd08392		128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.6
cd04050		105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.6
cd00138		176	PLDc Phospholipase D. Active site motifs; The PLD	99.6
cd04029		125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.6
cd08394		127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.6
cd08382		123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.6
cd08680		124	C2_Kibra C2 domain found in Human protein Kibra. K	99.59
cd04045		120	C2C_Tricalbin-like C2 domain third repeat present	99.59
cd04051		125	C2_SRC2_like C2 domain present in Soybean genes Re	99.58
cd04027		127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.58
cd04010		148	C2B_RasA3 C2 domain second repeat present in RAS p	99.58
cd04017		135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.58
cd08690		155	C2_Freud-1 C2 domain found in 5' repressor element	99.57
cd04043		126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.57
cd04030		127	C2C_KIAA1228 C2 domain third repeat present in unc	99.57
cd04031		125	C2A_RIM1alpha C2 domain first repeat contained in	99.56
cd08383		117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.56
cd08521		123	C2A_SLP C2 domain first repeat present in Synaptot	99.55
cd04041		111	C2A_fungal C2 domain first repeat; fungal group. C	99.55
cd08407		138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.54
cd04040		115	C2D_Tricalbin-like C2 domain fourth repeat present	99.54
PRK13912		177	nuclease NucT; Provisional	99.53
cd08388		128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.53
cd04052		111	C2B_Tricalbin-like C2 domain second repeat present	99.53
cd08389		124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.53
cd04039		108	C2_PSD C2 domain present in Phosphatidylserine dec	99.53
cd08386		125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.53
cd08406		136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.53
cd00138		176	PLDc Phospholipase D. Active site motifs; The PLD	99.53
cd04018		151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.52
cd04049		124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.52
cd04011		111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.51
cd08384		133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.51
cd08390		123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.51
cd08692		135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.5
PHA03003		369	palmytilated EEV membrane glycoprotein; Provisiona	99.5
PRK13912		177	nuclease NucT; Provisional	99.5
cd08404		136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.5
cd04020		162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.49
cd08676		153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.48
cd04026		131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.48
KOG1028		421	consensus Ca2+-dependent phospholipid-binding prot	99.48
cd08675		137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.47
cd08405		136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.47
cd08402		136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.47
PRK12452		509	cardiolipin synthetase; Reviewed	99.47
cd08403		134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.46
cd08409		137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.45
cd04038		145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.45
cd00276		134	C2B_Synaptotagmin C2 domain second repeat present	99.45
cd08408		138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.45
cd08410		135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.45
cd00275		128	C2_PLC_like C2 domain present in Phosphoinositide-	99.44
PF13091		126	PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A	99.44
cd04032		127	C2_Perforin C2 domain of Perforin. Perforin contai	99.44
cd04021		125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.44
cd08691		137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.42
KOG0696		683	consensus Serine/threonine protein kinase [Signal	99.42
cd04009		133	C2B_Munc13-like C2 domain second repeat in Munc13	99.42
cd08686		118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.39
cd04048		120	C2A_Copine C2 domain first repeat in Copine. There	99.37
cd04035		123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.36
cd04037		124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.36
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	99.35
KOG2059		800	consensus Ras GTPase-activating protein [Signal tr	99.27
KOG3603		456	consensus Predicted phospholipase D [General funct	99.24
PF13091		126	PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A	99.2
PRK05443		691	polyphosphate kinase; Provisional	99.2
PRK01642		483	cls cardiolipin synthetase; Reviewed	99.17
PRK11263		411	cardiolipin synthase 2; Provisional	99.17
cd04047		110	C2B_Copine C2 domain second repeat in Copine. Ther	99.17
PF00168		85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.16
cd00030		102	C2 C2 domain. The C2 domain was first identified i	99.08
smart00239		101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.04
PLN02223		537	phosphoinositide phospholipase C	99.03
KOG1011		1283	consensus Neurotransmitter release regulator, UNC-	99.03
PLN02952		599	phosphoinositide phospholipase C	98.97
KOG1028		421	consensus Ca2+-dependent phospholipid-binding prot	98.96
KOG0169		746	consensus Phosphoinositide-specific phospholipase	98.93
COG5038		1227	Ca2+-dependent lipid-binding protein, contains C2	98.91
cd08374		133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	98.91
PLN02230		598	phosphoinositide phospholipase C 4	98.91
COG5038		1227	Ca2+-dependent lipid-binding protein, contains C2	98.9
PLN02222		581	phosphoinositide phospholipase C 2	98.83
KOG1031		1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.83
PLN02228		567	Phosphoinositide phospholipase C	98.77
cd08689		109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.75
KOG3603		456	consensus Predicted phospholipase D [General funct	98.75
PRK09428		451	pssA phosphatidylserine synthase; Provisional	98.68
PF00614		28	PLDc: Phospholipase D Active site motif; InterPro:	98.67
KOG1264		1267	consensus Phospholipase C [Lipid transport and met	98.46
COG1502		438	Cls Phosphatidylserine/phosphatidylglycerophosphat	98.4
KOG1328		1103	consensus Synaptic vesicle protein BAIAP3, involve	98.35
smart00155		28	PLDc Phospholipase D. Active site motifs. Phosphat	98.35
KOG1328		1103	consensus Synaptic vesicle protein BAIAP3, involve	98.31
KOG0905		1639	consensus Phosphoinositide 3-kinase [Signal transd	98.13
TIGR03705		672	poly_P_kin polyphosphate kinase 1. Members of this	97.95
cd08683		143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.94
KOG2059		800	consensus Ras GTPase-activating protein [Signal tr	97.91
KOG3964		469	consensus Phosphatidylglycerolphosphate synthase [	97.86
PF00614		28	PLDc: Phospholipase D Active site motif; InterPro:	97.74
PF07894		284	DUF1669: Protein of unknown function (DUF1669); In	97.65
smart00155		28	PLDc Phospholipase D. Active site motifs. Phosphat	97.64
PF13918		177	PLDc_3: PLD-like domain	97.45
KOG1011		1283	consensus Neurotransmitter release regulator, UNC-	97.41
cd08684		103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.35
KOG2060		405	consensus Rab3 effector RIM1 and related proteins,	97.25
KOG1013		362	consensus Synaptic vesicle protein rabphilin-3A [I	97.24
PLN02866		1068	phospholipase D	97.15
KOG3837		523	consensus Uncharacterized conserved protein, conta	97.0
KOG1326		1105	consensus Membrane-associated protein FER-1 and re	96.91
PLN02964		644	phosphatidylserine decarboxylase	96.69
KOG1013		362	consensus Synaptic vesicle protein rabphilin-3A [I	96.55
COG0855		696	Ppk Polyphosphate kinase [Inorganic ion transport	96.2
PF07894		284	DUF1669: Protein of unknown function (DUF1669); In	96.2
PF12416		340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.0
PF11495		233	Regulator_TrmB: Archaeal transcriptional regulator	95.94
KOG1265		1189	consensus Phospholipase C [Lipid transport and met	95.93
COG3886		198	Predicted HKD family nuclease [DNA replication, re	95.9
PF13090		352	PP_kinase_C: Polyphosphate kinase C-terminal domai	95.9
KOG1326		1105	consensus Membrane-associated protein FER-1 and re	95.51
PF10358		143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.12
KOG1327		529	consensus Copine [Signal transduction mechanisms]	94.91
PF13918		177	PLDc_3: PLD-like domain	94.64
PLN03008		868	Phospholipase D delta	93.8
PLN02352		758	phospholipase D epsilon	93.63
KOG1329		887	consensus Phospholipase D1 [Lipid transport and me	93.17
PF15625		168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.57
COG3886		198	Predicted HKD family nuclease [DNA replication, re	92.46
PLN02270		808	phospholipase D alpha	92.15
cd08693		173	C2_PI3K_class_I_beta_delta C2 domain present in cl	92.14
PF13090		352	PP_kinase_C: Polyphosphate kinase C-terminal domai	92.09
cd08398		158	C2_PI3K_class_I_alpha C2 domain present in class I	91.95
cd08380		156	C2_PI3K_like C2 domain present in phosphatidylinos	91.42
KOG1452		442	consensus Predicted Rho GTPase-activating protein	91.33
PF15627		156	CEP76-C2: CEP76 C2 domain	90.2
cd08687		98	C2_PKN-like C2 domain in Protein kinase C-like (PK	89.84
COG0855		696	Ppk Polyphosphate kinase [Inorganic ion transport	88.22
PF00792		142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	87.65
PF09565		296	RE_NgoFVII: NgoFVII restriction endonuclease; Inte	86.85
cd08397		159	C2_PI3K_class_III C2 domain present in class III p	86.61
cd04012		171	C2A_PI3K_class_II C2 domain first repeat present i	86.23
PF11495		233	Regulator_TrmB: Archaeal transcriptional regulator	86.22
KOG4269		1112	consensus Rac GTPase-activating protein BCR/ABR [S	82.79
PF11618		107	DUF3250: Protein of unknown function (DUF3250); In	81.57
cd08695		189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	81.55

>PLN03008 Phospholipase D delta	Back alignment and domain information

Probab=100.00  E-value=2.2e-128  Score=1092.77  Aligned_cols=718  Identities=70%  Similarity=1.165  Sum_probs=624.4

Q ss_pred             CCceeeeeccEEEEEEEEeeCCCCCCCCchhhhccccccccCCCCCCCCccccCCcCccccccccccCCCcCCCcEEEEE
Q 004774            8 DKEKVIYLHGDLDLKIIRARRLPNMDMMSEHLRRCFTACDVCKTPAPTHETFQDDDGVRHTSKIIRKSKIITSDPYVTVV   87 (731)
Q Consensus         8 ~~~~~~~~~g~L~v~i~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~yv~v~   87 (731)
                      -+++++++||+|+++|.+|++|++||+.+++++.++..+..|..+..+-.-....+|....+++-...+.+++||||+|.
T Consensus         5 ~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~   84 (868)
T PLN03008          5 VSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVV   84 (868)
T ss_pred             cccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEE
Confidence            46788999999999999999999999999989999887776664322111111112211112333444677899999999


Q ss_pred             ECCeeeeeeccccCCCCCeEeeEEEEeecCCCCeEEEEEEEcCCCCCceeEEEecccccccCCceeEEEEEccCCCCCCC
Q 004774           88 VPQATVARTRVLKNSQEPVWNEHFNIPLAHPLSNLEIQVKDDDVFGAQIIGTAAIPAHTIATGELISRWYDIIAPSGSPP  167 (731)
Q Consensus        88 l~~~~~~~T~v~~~~~~P~wne~f~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~~~~~~~~~~w~~l~~~~~~~~  167 (731)
                      ++++++.||+|++++.||+|||+|.|.++++...|+|+|||.|.+++++||++.|||+++..|+..+.|++|++..++|.
T Consensus        85 Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~  164 (868)
T PLN03008         85 VPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPP  164 (868)
T ss_pred             ECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCC
Confidence            99888889999999999999999999999998999999999999999999999999999999999999999999999998


Q ss_pred             CCCceEEEEEEEeecCCCCccccccCCCCCCCCcccccCCCCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHH
Q 004774          168 KPGASIQLELKFTPCDKNPLYRQGIAGDPEHKGVRNAYFPLRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDI  247 (731)
Q Consensus       168 ~~~g~L~lsl~y~p~~~~p~~~~gi~~~~e~~gv~~s~~p~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l  247 (731)
                      +..++|+++|+|+|...++.|..|++++|++.|++.+++|.+.|++|+||+|+|+++++.|.+.|.+|+.|++..||+++
T Consensus       165 k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi  244 (868)
T PLN03008        165 KAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDI  244 (868)
T ss_pred             CCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcCCEEEEEEeCCCCccCccCccCCCcccCCh
Q 004774          248 CHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLGVKTPGVMATHD  327 (731)
Q Consensus       248 ~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rGVkVriLv~D~~gs~~~~~~~~~~~~~~~~  327 (731)
                      ++||++||++|||++|+++|+++|+|++..  |.+...+|.++|++||+|||+|+|||||+..|...++++..|.|.+||
T Consensus       245 ~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~--~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thd  322 (868)
T PLN03008        245 CYAISEAHHMIYIVGWSIFHKIKLVRETKV--PRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHD  322 (868)
T ss_pred             HHHHHhhhheEEEeceeecceeEEecCCCC--CCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccccccccccccc
Confidence            999999999999999999999999998752  222358999999999999999999999999987666778889999999


Q ss_pred             HHHHhhhcCCCceEEecccCCCCcccccccc-----------cccccccccceeEEeccCCCCCCcceEEEEccccCCCC
Q 004774          328 EETKKFFKHSSVNCVLAPRYASSKLSYFKQQ-----------IVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDG  396 (731)
Q Consensus       328 ~~~~~~l~~~gV~v~~~~~~p~~~~~~~~~~-----------~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~  396 (731)
                      +++.++++|++|.|.++|+++....+++++.           ...+.++||||+||||+++++.+|+.+|||||+|+|++
T Consensus       323 eet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~g  402 (868)
T PLN03008        323 EETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDG  402 (868)
T ss_pred             HHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCC
Confidence            9999999999999999998877666666542           23367999999999999877788999999999999999


Q ss_pred             CCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccchhhhhhccccccc
Q 004774          397 RYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLTELTFKFKRVSHWR  476 (731)
Q Consensus       397 r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~~~~~~~~~~~~~~  476 (731)
                      ||||+.|++++++++.+++||+||++.++.+.|++||||+|++|+||+|.+|+.+|.+||+.+++........++...|.
T Consensus       403 RwDT~~H~l~~~l~t~~~~D~~np~~~~~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~  482 (868)
T PLN03008        403 RYDTPEHRILHDLDTVFKDDFHNPTFPAGTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQ  482 (868)
T ss_pred             ccCCcCCCccccccccccccccCccccCCCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccccccc
Confidence            99999999999999999999999998877788999999999999999999999999999999988642222233445567


Q ss_pred             ccchhhccccccccCCcccccCCCccccCCCCcccccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccc
Q 004774          477 DDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVVRVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDV  556 (731)
Q Consensus       477 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~  556 (731)
                      ++.|+.+.++++++.|.....+++....+...+.+......++++|.+|++||++.|+++++|+.+++++.+++.++++.
T Consensus       483 ~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~  562 (868)
T PLN03008        483 DDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRL  562 (868)
T ss_pred             cchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccccccc
Confidence            78888888888777654211111111111111100000123567889999999999999999999988888999999999


Q ss_pred             cchhHHHHHHHHHHHhccceEEEecccccccccCCCcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCC
Q 004774          557 VIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAWPSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGDPK  636 (731)
Q Consensus       557 ~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~~~  636 (731)
                      ..|.||+.+|+++|++||||||||||||+++...|+++++.++.|+|+++|+++|+++++++++|+|+||+|.+|+|+++
T Consensus       563 ~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~  642 (868)
T PLN03008        563 VVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPK  642 (868)
T ss_pred             chhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEEeccCCC------------------------CCCCCccc
Q 004774          637 TNTVQEILFWQSQTMQMMYSVVAQELREMQVDAHPQDYLSFYCLGKRE------------------------EAPKDVLA  692 (731)
Q Consensus       637 ~~~v~~~~~~~~~ti~~~~~~~~~~Ll~~Gv~~~~~~yi~~y~~~~~~------------------------~~lHaK~~  692 (731)
                      +..+|+||+||++||+++|.+++++|.++|.+.+|.+|+.|||+|+++                        .++|||+|
T Consensus       643 sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~~~~~~~~~~~~~a~~~rr~~IYvHsK~~  722 (868)
T PLN03008        643 SGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDDMPATNGSVVSDSYNFQRFMIYVHAKGM  722 (868)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccCCCCCCCCchhhhhhhccceeEEEeeeEE
Confidence            889999999999999999999999999988755688999999997653                        23899999


Q ss_pred             cCCCceeeecccccccccccc--ccceeEEEeccccc
Q 004774          693 NNGDKMLGISFSNFFMRIEGS--QKCCHIHIFANSFL  727 (731)
Q Consensus       693 ivDd~~~~vGS~Nld~RS~~~--n~E~~~~i~~~~~~  727 (731)
                      ||||++++|||+|+|.|||.+  |+|+++.++++.-.
T Consensus       723 ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~  759 (868)
T PLN03008        723 IVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHT  759 (868)
T ss_pred             EECCCEEEEeccccCHhhccCCCCceEeEEecccccc
Confidence            999999999999999999998  99999999977643

>PLN02270 phospholipase D alpha	Back alignment and domain information

>PLN02352 phospholipase D epsilon	Back alignment and domain information

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]	Back alignment and domain information

>PLN02866 phospholipase D	Back alignment and domain information

>PRK12452 cardiolipin synthetase; Reviewed	Back alignment and domain information

>PRK01642 cls cardiolipin synthetase; Reviewed	Back alignment and domain information

>PRK11263 cardiolipin synthase 2; Provisional	Back alignment and domain information

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	Back alignment and domain information

>PRK09428 pssA phosphatidylserine synthase; Provisional	Back alignment and domain information

>PHA02820 phospholipase-D-like protein; Provisional	Back alignment and domain information

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional	Back alignment and domain information

>PRK05443 polyphosphate kinase; Provisional	Back alignment and domain information

>TIGR03705 poly_P_kin polyphosphate kinase 1	Back alignment and domain information

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)	Back alignment and domain information

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)	Back alignment and domain information

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family	Back alignment and domain information

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I	Back alignment and domain information

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)	Back alignment and domain information

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3	Back alignment and domain information

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins	Back alignment and domain information

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein	Back alignment and domain information

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4	Back alignment and domain information

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)	Back alignment and domain information

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>PHA02820 phospholipase-D-like protein; Provisional	Back alignment and domain information

>cd08677 C2A_Synaptotagmin-13 C2 domain	Back alignment and domain information

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon	Back alignment and domain information

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)	Back alignment and domain information

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins	Back alignment and domain information

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins	Back alignment and domain information

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family	Back alignment and domain information

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4	Back alignment and domain information

>cd08375 C2_Intersectin C2 domain present in Intersectin	Back alignment and domain information

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin	Back alignment and domain information

>cd04046 C2_Calpain C2 domain present in Calpain proteins	Back alignment and domain information

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10	Back alignment and domain information

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone	Back alignment and domain information

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]	Back alignment and domain information

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8	Back alignment and domain information

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2	Back alignment and domain information

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3	Back alignment and domain information

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd00138 PLDc Phospholipase D	Back alignment and domain information

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5	Back alignment and domain information

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins	Back alignment and domain information

>cd08680 C2_Kibra C2 domain found in Human protein Kibra	Back alignment and domain information

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins	Back alignment and domain information

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)	Back alignment and domain information

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin	Back alignment and domain information

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)	Back alignment and domain information

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group	Back alignment and domain information

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins	Back alignment and domain information

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins	Back alignment and domain information

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)	Back alignment and domain information

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd04041 C2A_fungal C2 domain first repeat; fungal group	Back alignment and domain information

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13	Back alignment and domain information

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins	Back alignment and domain information

>PRK13912 nuclease NucT; Provisional	Back alignment and domain information

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11	Back alignment and domain information

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16	Back alignment and domain information

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)	Back alignment and domain information

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7	Back alignment and domain information

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12	Back alignment and domain information

>cd00138 PLDc Phospholipase D	Back alignment and domain information

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin	Back alignment and domain information

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene	Back alignment and domain information

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin	Back alignment and domain information

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain	Back alignment and domain information

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17	Back alignment and domain information

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)	Back alignment and domain information

>PHA03003 palmytilated EEV membrane glycoprotein; Provisional	Back alignment and domain information

>PRK13912 nuclease NucT; Provisional	Back alignment and domain information

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4	Back alignment and domain information

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4	Back alignment and domain information

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins	Back alignment and domain information

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma	Back alignment and domain information

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)	Back alignment and domain information

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7	Back alignment and domain information

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1	Back alignment and domain information

>PRK12452 cardiolipin synthetase; Reviewed	Back alignment and domain information

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10	Back alignment and domain information

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15	Back alignment and domain information

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)	Back alignment and domain information

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin	Back alignment and domain information

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16	Back alignment and domain information

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17	Back alignment and domain information

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)	Back alignment and domain information

>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A	Back alignment and domain information

>cd04032 C2_Perforin C2 domain of Perforin	Back alignment and domain information

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase	Back alignment and domain information

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)	Back alignment and domain information

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins	Back alignment and domain information

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein	Back alignment and domain information

>cd04048 C2A_Copine C2 domain first repeat in Copine	Back alignment and domain information

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain	Back alignment and domain information

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG3603 consensus Predicted phospholipase D [General function prediction only]	Back alignment and domain information

>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A	Back alignment and domain information

>PRK05443 polyphosphate kinase; Provisional	Back alignment and domain information

>PRK01642 cls cardiolipin synthetase; Reviewed	Back alignment and domain information

>PRK11263 cardiolipin synthase 2; Provisional	Back alignment and domain information

>cd04047 C2B_Copine C2 domain second repeat in Copine	Back alignment and domain information

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking	Back alignment and domain information

>cd00030 C2 C2 domain	Back alignment and domain information

>smart00239 C2 Protein kinase C conserved region 2 (CalB)	Back alignment and domain information

>PLN02223 phosphoinositide phospholipase C	Back alignment and domain information

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN02952 phosphoinositide phospholipase C	Back alignment and domain information

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]	Back alignment and domain information

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin	Back alignment and domain information

>PLN02230 phosphoinositide phospholipase C 4	Back alignment and domain information

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]	Back alignment and domain information

>PLN02222 phosphoinositide phospholipase C 2	Back alignment and domain information

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]	Back alignment and domain information

>PLN02228 Phosphoinositide phospholipase C	Back alignment and domain information

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae	Back alignment and domain information

>KOG3603 consensus Predicted phospholipase D [General function prediction only]	Back alignment and domain information

>PRK09428 pssA phosphatidylserine synthase; Provisional	Back alignment and domain information

>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs)	Back alignment and domain information

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]	Back alignment and domain information

>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	Back alignment and domain information

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]	Back alignment and domain information

>smart00155 PLDc Phospholipase D	Back alignment and domain information

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]	Back alignment and domain information

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR03705 poly_P_kin polyphosphate kinase 1	Back alignment and domain information

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins	Back alignment and domain information

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]	Back alignment and domain information

>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs)	Back alignment and domain information

>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>smart00155 PLDc Phospholipase D	Back alignment and domain information

>PF13918 PLDc_3: PLD-like domain	Back alignment and domain information

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)	Back alignment and domain information

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN02866 phospholipase D	Back alignment and domain information

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]	Back alignment and domain information

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PLN02964 phosphatidylserine decarboxylase	Back alignment and domain information

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length	Back alignment and domain information

>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator	Back alignment and domain information

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]	Back alignment and domain information

>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B	Back alignment and domain information

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []	Back alignment and domain information

>KOG1327 consensus Copine [Signal transduction mechanisms]	Back alignment and domain information

>PF13918 PLDc_3: PLD-like domain	Back alignment and domain information

>PLN03008 Phospholipase D delta	Back alignment and domain information

>PLN02352 phospholipase D epsilon	Back alignment and domain information

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]	Back alignment and domain information

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain	Back alignment and domain information

>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PLN02270 phospholipase D alpha	Back alignment and domain information

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B	Back alignment and domain information

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]	Back alignment and domain information

>PF15627 CEP76-C2: CEP76 C2 domain	Back alignment and domain information

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins	Back alignment and domain information

>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2	Back alignment and domain information

>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV	Back alignment and domain information

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)	Back alignment and domain information

>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator	Back alignment and domain information

>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]	Back alignment and domain information

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function	Back alignment and domain information

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		731
1rlw_A		126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-18
2fk9_A		157	Protein kinase C, ETA type; ATP-binding, metal-bin	2e-17
1gmi_A		136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-17
1wfj_A		136	Putative elicitor-responsive gene; C2 domain, rike	2e-16
2dmh_A		140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	3e-16
2ep6_A		133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-15
3b7y_A		153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	3e-14
3m7f_B		176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-13
2nq3_A		173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-12
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-11
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-07
2dmg_A		142	KIAA1228 protein; beta-sandwich, structural genomi	2e-11
3pyc_A		132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-11
1wfm_A		138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	7e-11
2cjt_A		131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	7e-11
1cjy_A		749	CPLA2, protein (cytosolic phospholipase A2); lipid	7e-11
3f04_A		143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-10
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	2e-10
2z0u_A		155	WW domain-containing protein 1; C2 domain, alterna	2e-10
3fdw_A		148	Synaptotagmin-like protein 4; structural genomics,	2e-10
1rsy_A		152	Synaptotagmin I; calcium/phospholipid binding prot	2e-10
1a25_A		149	CALB, protein kinase C (beta); calcium++/phospholi	4e-10
1v27_A		141	Regulating synaptic membrane exocytosis protein 2;	1e-09
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-09
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-07
1v0w_A		506	Phospholipase D; hydrolase, substrate SOAK, dibuty	2e-09
2d8k_A		141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-09
2b3r_A		134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-09
2enp_A		147	B/K protein; C2 type 1,beta sandwich, structural g	3e-09
3rdl_A		137	Protein kinase C alpha type; protein kinase PKC, t	6e-09
1rh8_A		142	Piccolo protein; beta-sandwich, metal binding prot	8e-09
3l9b_A		144	Otoferlin; C2-domain, beta-sheets, cell membrane,	9e-09
1ugk_A		138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-08
3fbk_A		153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-08
1w15_A		153	Synaptotagmin IV; metal binding protein, endocytos	2e-08
2cjs_A		167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-08
2chd_A		142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-08
2q3x_A		171	Regulating synaptic membrane exocytosis protein 1;	7e-08
2bwq_A		129	Regulating synaptic membrane exocytosis protein 2;	8e-08
3n5a_A		138	Synaptotagmin-7; calcium/phospholipid binding prot	8e-08
1tjx_A		159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-07
2cm5_A		166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-07
3nsj_A		540	Perforin-1; pore forming protein, immune system; H	2e-05
3bxj_A		483	RAS GTPase-activating protein syngap; GTPase activ	7e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126	Back alignment and structure

 Score = 81.6 bits (202), Expect = 1e-18
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 79  TSDPYVTVVVPQA--TVARTRVLKNSQEPVWNEHFNIPLAHPLSN-LEIQVKDDDVFGAQ 135
           T DPYV + +     +  RTR   N   PVWNE F   L     N LEI + D +    +
Sbjct: 26  TPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDE 85

Query: 136 IIGTAAIPAHTIATGELISRWYDIIAPSGSPPKPGASIQLELKFTPCD 183
            +GTA     ++  GE     +               + LE+      
Sbjct: 86  TLGTATFTVSSMKVGEKKEVPFIF--------NQVTEMVLEMSLEVAS 125

PyMOL of 1rlw

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157	Back alignment and structure

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136	Back alignment and structure

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136	Back alignment and structure

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140	Back alignment and structure

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133	Back alignment and structure

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153	Back alignment and structure

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176	Back alignment and structure

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284	Back alignment and structure

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142	Back alignment and structure

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132	Back alignment and structure

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138	Back alignment and structure

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131	Back alignment and structure

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749	Back alignment and structure

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148	Back alignment and structure

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155	Back alignment and structure

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148	Back alignment and structure

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152	Back alignment and structure

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149	Back alignment and structure

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296	Back alignment and structure

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506	Back alignment and structure

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141	Back alignment and structure

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134	Back alignment and structure

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147	Back alignment and structure

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142	Back alignment and structure

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144	Back alignment and structure

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138	Back alignment and structure

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153	Back alignment and structure

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153	Back alignment and structure

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167	Back alignment and structure

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142	Back alignment and structure

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171	Back alignment and structure

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129	Back alignment and structure

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138	Back alignment and structure

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159	Back alignment and structure

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166	Back alignment and structure

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540	Back alignment and structure

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		731
3hsi_A		458	Phosphatidylserine synthase; CDP- diacylglycerol--	100.0
1v0w_A		506	Phospholipase D; hydrolase, substrate SOAK, dibuty	100.0
1xdp_A		687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	99.95
2o8r_A		705	Polyphosphate kinase; structural genomics, protein	99.94
2fk9_A		157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.78
2dmh_A		140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.77
4ggj_A		196	Mitochondrial cardiolipin hydrolase; piRNA pathway	99.77
2ep6_A		133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.76
3b7y_A		153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.76
1wfj_A		136	Putative elicitor-responsive gene; C2 domain, rike	99.76
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	99.76
1gmi_A		136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.75
3m7f_B		176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.74
1rlw_A		126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.71
1byr_A		155	Protein (endonuclease); phosphodiesterase,; 2.00A	99.71
3pyc_A		132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.69
2nq3_A		173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.68
1byr_A		155	Protein (endonuclease); phosphodiesterase,; 2.00A	99.66
2b3r_A		134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.65
4gel_A		220	Mitochondrial cardiolipin hydrolase; piRNA, phosph	99.64
4ggj_A		196	Mitochondrial cardiolipin hydrolase; piRNA pathway	99.63
1rsy_A		152	Synaptotagmin I; calcium/phospholipid binding prot	99.63
1a25_A		149	CALB, protein kinase C (beta); calcium++/phospholi	99.63
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.62
3rdl_A		137	Protein kinase C alpha type; protein kinase PKC, t	99.62
1rh8_A		142	Piccolo protein; beta-sandwich, metal binding prot	99.62
2q3x_A		171	Regulating synaptic membrane exocytosis protein 1;	99.62
3fdw_A		148	Synaptotagmin-like protein 4; structural genomics,	99.62
3f04_A		143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.62
2z0u_A		155	WW domain-containing protein 1; C2 domain, alterna	99.61
2d8k_A		141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.6
2bwq_A		129	Regulating synaptic membrane exocytosis protein 2;	99.6
3fbk_A		153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.58
1v27_A		141	Regulating synaptic membrane exocytosis protein 2;	99.58
2chd_A		142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.58
1wfm_A		138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.58
2dmg_A		142	KIAA1228 protein; beta-sandwich, structural genomi	99.56
1ugk_A		138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.56
3n5a_A		138	Synaptotagmin-7; calcium/phospholipid binding prot	99.55
1tjx_A		159	Similar to synaptotagmini/P65; C2B domain, calcium	99.54
2enp_A		147	B/K protein; C2 type 1,beta sandwich, structural g	99.54
1w15_A		153	Synaptotagmin IV; metal binding protein, endocytos	99.54
2cm5_A		166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.54
3l9b_A		144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.5
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.5
2cjt_A		131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.47
1xdp_A		687	Polyphosphate kinase; PPK, PPK complex with AMPPNP	99.42
4gel_A		220	Mitochondrial cardiolipin hydrolase; piRNA, phosph	99.41
3jzy_A		510	Intersectin 2; C2 domain, structural genomics cons	99.4
2cjs_A		167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.38
3nsj_A		540	Perforin-1; pore forming protein, immune system; H	99.38
1djx_A		624	PLC-D1, phosphoinositide-specific phospholipase C,	99.38
3bxj_A		483	RAS GTPase-activating protein syngap; GTPase activ	99.36
2r83_A		284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.31
1cjy_A		749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.3
1dqv_A		296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.25
3hsi_A		458	Phosphatidylserine synthase; CDP- diacylglycerol--	99.03
3pfq_A		674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.03
3ohm_B		885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	98.96
3qr0_A		816	Phospholipase C-beta (PLC-beta); PH domain, EF han	98.95
2zkm_X		799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.92
1yrk_A		126	NPKC-delta, protein kinase C, delta type; C2 domai	98.84
1v0w_A		506	Phospholipase D; hydrolase, substrate SOAK, dibuty	98.83
2enj_A		138	NPKC-theta, protein kinase C theta type; beta-sand	98.8
2o8r_A		705	Polyphosphate kinase; structural genomics, protein	98.53
3qph_A		342	TRMB, A global transcription regulator; transcript	97.75
3qph_A		342	TRMB, A global transcription regulator; transcript	95.73
2c1l_A		358	Restriction endonuclease; BFII, domain fusion, hyd	95.05
2f5t_X		233	Archaeal transcriptional regulator TRMB; sugar-bin	94.45
3l4c_A		220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	82.59
2f5t_X		233	Archaeal transcriptional regulator TRMB; sugar-bin	82.23
2yrb_A		156	Protein fantom; beta sandwich, NPPSFA, national pr	80.76

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}	Back alignment and structure

Probab=100.00  E-value=5.4e-43  Score=391.48  Aligned_cols=360  Identities=11%  Similarity=0.030  Sum_probs=228.2

Q ss_pred             CCCCCeeEEeecccccCCCCCceEcCCCCccCCcchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcH
Q 004774          208 LRKGSHVRLYQDAHVTEGILPEIPLDGGKLYKPGTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTL  287 (731)
Q Consensus       208 ~~~gn~v~~~~~g~~~~~~~~~~~l~~g~~y~~~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l  287 (731)
                      ++.+|.|+++.+|                    +++|++++++|++|+++|+|++|+|.+       |+    .|  ..|
T Consensus        23 ~~~~n~v~~l~~g--------------------~~~~~~l~~~I~~A~~~I~i~~~~~~~-------d~----~g--~~l   69 (458)
T 3hsi_A           23 ALQAEQIEFLGSS--------------------AEFKTQIIELIRNAKKRIYVTALYWQK-------DE----AG--QEI   69 (458)
T ss_dssp             ECCGGGEEECCCH--------------------HHHHHHHHHHHHTCSSEEEEEESCBCS-------SH----HH--HHH
T ss_pred             cccCCeEEEEeCH--------------------HHHHHHHHHHHHhcCCEEEEEEEEEec-------Cc----HH--HHH
Confidence            3569999999999                    689999999999999999999999864       32    34  799


Q ss_pred             HHHHHHHhhc--CCEEEEEEeCC-------CCccCccCccCCCcccCChHHHHhhhcCC--CceEE--ecccCCCCcccc
Q 004774          288 GELLKYKSEE--GVRVLLLVWDD-------KTSHDKLGVKTPGVMATHDEETKKFFKHS--SVNCV--LAPRYASSKLSY  354 (731)
Q Consensus       288 ~~~L~~aA~r--GVkVriLv~D~-------~gs~~~~~~~~~~~~~~~~~~~~~~l~~~--gV~v~--~~~~~p~~~~~~  354 (731)
                      .++|.+||+|  ||+||||+ |+       +|+....          ....+.+.|..+  +|+|+  +++ +|.+    
T Consensus        70 ~~aL~~aa~r~~GV~Vril~-D~~~~~r~~~g~~~~~----------~~~~~~~~L~~~g~nv~v~~~~f~-~p~~----  133 (458)
T 3hsi_A           70 LDEIYRVKQENPHLDVKVLI-DWHRAQRNLLGAEKSA----------TNADWYCEQRQTYQLPDDPNMFFG-VPIN----  133 (458)
T ss_dssp             HHHHHHHHHHSTTCEEEEEE-ETTGGGSCCC-----C----------CHHHHHHHHHHHHTCTTCCCCEEE-ECSS----
T ss_pred             HHHHHHHHhcCCCCEEEEEE-ECcccccccccccccc----------ccHHHHHHHHhhCCCceEeeeecC-Cccc----
Confidence            9999999999  99999996 98       4443210          013444445433  38877  543 2322    


Q ss_pred             cccccccccccccceeEEeccCCCCCCcceEEEEccccCCCCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCce
Q 004774          355 FKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWH  434 (731)
Q Consensus       355 ~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWh  434 (731)
                          ....+.|+|+|++||||+        + ++||+||+++|+...                          .+...|+
T Consensus       134 ----~~~~~~r~H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~--------------------------~~~~~dr  174 (458)
T 3hsi_A          134 ----TREVFGVLHVKGFVFDDT--------V-LYSGASINNVYLHQF--------------------------EKYRYDR  174 (458)
T ss_dssp             ----SSGGGCCEECCEEEETTE--------E-EEESCCBSTTTTTCS--------------------------SCCEECC
T ss_pred             ----cccccCcceeeEEEECCC--------E-EEEeeecCHHHhcCC--------------------------cccCcch
Confidence                123567999999999998        8 556699999766431                          1124577


Q ss_pred             eeeeeEeChHHHHHHHHH--HHHHHhhcccchhhhhhccc-ccccccchhhccccccccCCcccccCCCccccCCCCccc
Q 004774          435 DLHCRLDGPAAYDVLINF--EQRWRKATKLTELTFKFKRV-SHWRDDYLIKIGRISWILSPELSLKTNGTTIVPRDDNVV  511 (731)
Q Consensus       435 Dv~~~i~Gpav~dl~~~F--~~~Wn~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  511 (731)
                      |  +.+.||.+.|....|  ...|+...-.. +....... ..|...    .......+....      ...+|.     
T Consensus       175 d--~~i~g~~~~D~~~~~~~~~~~~g~~v~~-l~~~~~~~~~~~~~~----~~~~~~~l~~~~------~~~~~~-----  236 (458)
T 3hsi_A          175 Y--QKITHAELADSMVNFINDYLLDFSAVYP-LDVTNRPRTKEIRGN----IRAYRKDLAQNG------EYSLKS-----  236 (458)
T ss_dssp             E--EEEECHHHHHHHHHHHHHTTCCTTTCEE-SSSSCCCCGGGTHHH----HHHHHHHHHHHC------CCCCSS-----
T ss_pred             h--hhhcCchHHHHHHHHHHhhhhcCccchh-hHHHhcccchhhHHH----HHHHHHhhhhcc------cccccc-----
Confidence            7  449999999999999  44575432211 00000000 000000    000000000000      000010     


Q ss_pred             ccccCCCCCCeeeEEEeeecCCCCCCCCCCchhhhhhhhhccccccchhHHHHHHHHHHHhccceEEEecccccccccCC
Q 004774          512 RVSKEDDPENWHVQIFRSIDSGSVKGFPKSIEDIDDQSLICAKDVVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYAW  591 (731)
Q Consensus       512 ~~~~~~~~~~~~~qv~rs~~~~~~~~~p~~~~~~~~~~~~~~~~~~~e~sI~~ayl~~I~~Ak~~IyIenqYFip~~~~~  591 (731)
                           ...+...+|+....  +     |..                .+..+..+|+.+|.+|+++|||+||||+|+.   
T Consensus       237 -----~~~~~~~~~v~p~~--~-----~~~----------------~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~---  285 (458)
T 3hsi_A          237 -----AVKLPNVLSVSPLF--G-----LGA----------------SGNELNQVIEDLFLQVQKKLVICTPYFNFPR---  285 (458)
T ss_dssp             -----CBSSCSSCEEEEEE--E-----ESS----------------SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH---
T ss_pred             -----cCCCCceEEEecCC--C-----CCC----------------chhHHHHHHHHHHHhcccEEEEEEeccCCCH---
Confidence                 00011123443311  1     110                1356899999999999999999999999985   


Q ss_pred             CcccCCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCC----CCChhHH-HHHHHHHHHHHHHHHHHHHHHHhcc
Q 004774          592 PSYKNAGADNLIPMELALKIASKIRANERFAVYVIIPMWPEGD----PKTNTVQ-EILFWQSQTMQMMYSVVAQELREMQ  666 (731)
Q Consensus       592 ~~~~~~~~~n~i~~~l~~~l~~a~~~~~gv~V~IvlP~~~~g~----~~~~~v~-~~~~~~~~ti~~~~~~~~~~Ll~~G  666 (731)
                                    .+..+|..|  +++||+|+||+|+...++    .+.+++. +...+.+..+...+..-++.|+++|
T Consensus       286 --------------~~~~aL~~A--a~rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G  349 (458)
T 3hsi_A          286 --------------TLQHKIATL--LENGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESG  349 (458)
T ss_dssp             --------------HHHHHHHHH--HTTTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             --------------HHHHHHHHH--HHCCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHhCC
Confidence                          788999998  779999999999975322    1222221 0000001000001111135788888


Q ss_pred             -cCCCcCCeEEEEeccCCCCCCCCccccCCCceeeeccccccccccccccceeEEEeccc--ccC
Q 004774          667 -VDAHPQDYLSFYCLGKREEAPKDVLANNGDKMLGISFSNFFMRIEGSQKCCHIHIFANS--FLG  728 (731)
Q Consensus       667 -v~~~~~~yi~~y~~~~~~~~lHaK~~ivDd~~~~vGS~Nld~RS~~~n~E~~~~i~~~~--~~~  728 (731)
                       ++      +.+|..  ..+++|||+++|||++++|||+|||+||+.+|+|++++|++++  +++
T Consensus       350 ~i~------V~i~~~--~~~~lHaK~~vvD~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~~~l~~  406 (458)
T 3hsi_A          350 QLV------VRLWRD--GDNTYHLKGVWVDDRYILLTGNNLNPRAWRLDAENGLLIYDPQQQLLA  406 (458)
T ss_dssp             SEE------EEEECB--TTBEECCCEEEETTTEEEEECCCCSHHHHHTCEEEEEEEECTTCSSHH
T ss_pred             CeE------EEEEec--CCCceeEEEEEECCeEEEecCCCCCcchhhhCceeEEEEeCCcHHHHH
Confidence             22      224443  3478999999999999999999999999999999999999997  543

PyMOL of 3hsi

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*	Back alignment and structure

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*	Back alignment and structure

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4	Back alignment and structure

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}	Back alignment and structure

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A	Back alignment and structure

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A	Back alignment and structure

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*	Back alignment and structure

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1	Back alignment and structure

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}	Back alignment and structure

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A	Back alignment and structure

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A	Back alignment and structure

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A	Back alignment and structure

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}	Back alignment and structure

>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A	Back alignment and structure

>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A	Back alignment and structure

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}	Back alignment and structure

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}	Back alignment and structure

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*	Back alignment and structure

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}	Back alignment and structure

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0	Back alignment and structure

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A	Back alignment and structure

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}	Back alignment and structure

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*	Back alignment and structure

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A	Back alignment and structure

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A	Back alignment and structure

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A	Back alignment and structure

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1	Back alignment and structure

>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*	Back alignment and structure

>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A	Back alignment and structure

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B	Back alignment and structure

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1	Back alignment and structure

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}	Back alignment and structure

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A	Back alignment and structure

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}	Back alignment and structure

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A	Back alignment and structure

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A	Back alignment and structure

>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}	Back alignment and structure

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A	Back alignment and structure

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}	Back alignment and structure

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A	Back alignment and structure

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B	Back alignment and structure

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A	Back alignment and structure

>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*	Back alignment and structure

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}	Back alignment and structure

>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4	Back alignment and structure

>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}	Back alignment and structure

>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}	Back alignment and structure

>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}	Back alignment and structure

>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5	Back alignment and structure

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}	Back alignment and structure

>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5	Back alignment and structure

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		731
d1v0wa1		258	d.136.1.2 (A:6-263) Phospholipase D {Streptomyces	1e-11
d1wfja_		136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	5e-11
d1rlwa_		126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	7e-10
d1gmia_		136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-09
d2cjta1		128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-08
d2bwqa1		125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	7e-08
d1a25a_		132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-07
d1rsya_		143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-07
d1bdya_		123	b.7.1.1 (A:) Domain from protein kinase C delta {R	9e-07
d1w15a_		138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-06
d2ep6a1		126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-05
d1qasa2		131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-05
d1rh8a_		142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-05
d2cm5a1		137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	4e-05
d1uowa_		157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-05
d2nq3a1		133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	0.004

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

 Score = 63.2 bits (153), Expect = 1e-11
 Identities = 32/237 (13%), Positives = 58/237 (24%), Gaps = 64/237 (27%)

Query: 228 PEIPLDGGKLYKPGT--CWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDL 285
           P    D     + GT      +   I  A   + I   + F                   
Sbjct: 48  PGCWGDDKCADRVGTKRLLAKMTENIGNATRTVDISTLAPFPNGAFQDA----------- 96

Query: 286 TLGELLKYKSEEGVRV-LLLVWDDKTSHDKLGVKTPGVMATHDEETKKFFKHSSVNCVLA 344
            +   LK  + +G ++ + ++      +          M     + +             
Sbjct: 97  -IVAGLKESAAKGNKLKVRILVGAAPVYH---------MNVIPSKYRDELTAKLGKAAEN 146

Query: 345 PRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLCDGRYDTPEHR 404
                + ++  K         +H K ++VD Q        +A  GGI+     Y    H 
Sbjct: 147 ITLNVASMTTSK----TAFSWNHSKILVVDGQ--------SALTGGINSWKDDYLDTTH- 193

Query: 405 LFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATK 461
                                      P  D+   L GPAA       +  W    +
Sbjct: 194 ---------------------------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQ 223

PyMOL of d1v0wa1

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136	Back information, alignment and structure

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126	Back information, alignment and structure

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136	Back information, alignment and structure

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128	Back information, alignment and structure

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125	Back information, alignment and structure

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132	Back information, alignment and structure

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143	Back information, alignment and structure

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123	Back information, alignment and structure

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138	Back information, alignment and structure

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126	Back information, alignment and structure

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131	Back information, alignment and structure

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142	Back information, alignment and structure

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137	Back information, alignment and structure

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157	Back information, alignment and structure

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		731
d1v0wa1		258	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.94
d2ep6a1		126	Multiple C2 and transmembrane domain-containing pr	99.77
d1gmia_		136	Domain from protein kinase C epsilon {Rat (Rattus	99.76
d1wfja_		136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.74
d1rlwa_		126	Domain from cytosolic phospholipase A2 {Human (Hom	99.71
d1v0wa2		246	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.68
d1a25a_		132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.66
d2nq3a1		133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.65
d2cjta1		128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.63
d1rsya_		143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.62
d1rh8a_		142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.61
d1qasa2		131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.59
d1byra_		152	Nuclease Nuc {Salmonella typhimurium [TaxId: 90371	99.57
d1byra_		152	Nuclease Nuc {Salmonella typhimurium [TaxId: 90371	99.56
d1dqva1		130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.56
d1w15a_		138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.51
d2bwqa1		125	Regulating synaptic membrane exocytosis protein, r	99.51
d1v0wa2		246	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.51
d1wfma_		138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.49
d1ugka_		138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.47
d2cm5a1		137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.47
d1uowa_		157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.45
d1dqva2		145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.41
d1bdya_		123	Domain from protein kinase C delta {Rat (Rattus no	99.41
d1v0wa1		258	Phospholipase D {Streptomyces sp. [TaxId: 1931]}	99.31
d2zkmx2		122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.27
d2o8ra3		188	Polyphosphate kinase, PPK {Porphyromonas gingivali	96.7
d2o8ra3		188	Polyphosphate kinase, PPK {Porphyromonas gingivali	96.59
d1xdpa3		187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	96.27
d1xdpa3		187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	95.89
d1xdpa4		187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	95.66
d2o8ra4		186	Polyphosphate kinase, PPK {Porphyromonas gingivali	91.83
d1e7ua2		174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	89.61
d2o8ra4		186	Polyphosphate kinase, PPK {Porphyromonas gingivali	85.73
d1xdpa4		187	Polyphosphate kinase, PPK {Escherichia coli [TaxId	82.4
d1q32a2		237	Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast	81.97

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Phospholipase D
domain: Phospholipase D
species: Streptomyces sp. [TaxId: 1931]

Probab=99.94  E-value=4.5e-28  Score=248.67  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=118.0

Q ss_pred             cchHHHHHHHHHhcccEEEEEEEEeeccceeeeccCCCCCCCCCCcHHHHHHHHhhcC--CEEEEEEeCCCCccCccCcc
Q 004774          241 GTCWEDICHAISEAHHLIYIVGWSVFHKIKLIREQTRPLPRGGDLTLGELLKYKSEEG--VRVLLLVWDDKTSHDKLGVK  318 (731)
Q Consensus       241 ~~~f~~l~~aI~~Ak~sI~i~~wi~~~~~~l~r~~~~~~~~G~~~~l~~~L~~aA~rG--VkVriLv~D~~gs~~~~~~~  318 (731)
                      +++|++|+++|++||++|+|++|+|.|+-.          .|  ..|.++|++||+||  |+||||+ |..|+....   
T Consensus        63 ~~~~~~~~~~I~~A~~~I~i~~~~~~pd~~----------~~--~~i~~aL~~aA~rG~~V~VriL~-d~~gs~~~~---  126 (258)
T d1v0wa1          63 KRLLAKMTENIGNATRTVDISTLAPFPNGA----------FQ--DAIVAGLKESAAKGNKLKVRILV-GAAPVYHMN---  126 (258)
T ss_dssp             HHHHHHHHHHHHTCSSEEEEEEESSCCCHH----------HH--HHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCC---
T ss_pred             HHHHHHHHHHHHHhccEEEEEEEEEcCCch----------HH--HHHHHHHHHHHhCCCCeEEEEEe-CCccccccc---
Confidence            578999999999999999999999765311          23  68999999999999  9999996 999886421   


Q ss_pred             CCCcccCChHHHHhhhcCCCceEE----ecccCCCCcccccccccccccccccceeEEeccCCCCCCcceEEEEccccCC
Q 004774          319 TPGVMATHDEETKKFFKHSSVNCV----LAPRYASSKLSYFKQQIVGTIFTHHQKCVLVDTQASGNNRKITAFIGGIDLC  394 (731)
Q Consensus       319 ~~~~~~~~~~~~~~~l~~~gV~v~----~~~~~p~~~~~~~~~~~~~~~~r~HrKivVVDg~~~~~~~~~vafvGG~NI~  394 (731)
                            .....+.+.|...++++.    +....+.        .....+.|||+|++||||+        +|||||+||+
T Consensus       127 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~rnH~Ki~VVDg~--------~a~vGG~Ni~  184 (258)
T d1v0wa1         127 ------VIPSKYRDELTAKLGKAAENITLNVASMT--------TSKTAFSWNHSKILVVDGQ--------SALTGGINSW  184 (258)
T ss_dssp             ------CHHHHHHHHHHHHHGGGGGGEEEEEEEEC--------SBTTTTBCBCCCEEEETTT--------EEEEESCCCC
T ss_pred             ------cchHHHHHHHHHhccceeecccccccccc--------ccccccccccceEEEEcCC--------EEEECCcccC
Confidence                  001234444444444332    1110000        0123467999999999999        9999999999


Q ss_pred             CCCCCCCCCCCcCCCCccccCCCCCCCCCCCCCCCCCCceeeeeeEeChHHHHHHHHHHHHHHhhcccc
Q 004774          395 DGRYDTPEHRLFRDLDTVFKDDFHNPTYPIGTKAPREPWHDLHCRLDGPAAYDVLINFEQRWRKATKLT  463 (731)
Q Consensus       395 ~~r~d~~~h~~~~~~~~~~~~dy~n~~~~~~~~~~~~pWhDv~~~i~Gpav~dl~~~F~~~Wn~~~~~~  463 (731)
                      ++||+..                            ..+|||++++|+||+|.+++..|.++|+.+++++
T Consensus       185 ~~~~~~~----------------------------~~~w~D~~~~v~Gp~v~~~~~~F~~~W~~~~~e~  225 (258)
T d1v0wa1         185 KDDYLDT----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNK  225 (258)
T ss_dssp             HHHHTSS----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCC----------------------------CCCeeeeEEEEECHHHHHHHHHHHHHHHHHhCCC
Confidence            9888653                            2379999999999999999999999999988764

PyMOL of d1v0wa1

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]}	Back information, alignment and structure

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}	Back information, alignment and structure

>d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure