Citrus Sinensis ID: 004781

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-

MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRASMNHQNGVSTSEISSTASSGVTSSGNGTEYSSPRKEE

ccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc

ccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccHHHccccHHHHEEEEEEEcccHHccHHHHHHHHHHHHHHHHcccccccccHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHcccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc

marcagiepctlimdlegtdgrergeddtAFEKQSALFALAVSDIVLINMWChdigreqaankpLLKTVFQVMMRlfsprkttLMFVIrdktrtplenlepvLREDIQKIWdsvpkpqahmetplseFFNVEVVALSSFEEKEELFKEQVASLRQRFyhsvapgglagdrrgvvpasgfsfsAHEIWKVIKenkdldlpaHKVMVATVRCEEIANekyssfaaNEEWCELEAavqsgpissfGKKLSSILETClsgydgevlyfdeGVRSAKRKQLEDKLLQLVQPAFQSMlghirsgtlDKFKDAFDKalsggegfssaaHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLneslsgpvealldgannetWPAIRKLLRCETEsaisgfsdalygfdmdEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTslfshdsdsmprvwtgkediRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLAlvdspsnaatnrsitnhdplasstweqvpssktlitpvqCKSLWRQFKSETEYSVTQAISAQEAnkrnnnwlpppWAIAAMMVLGFNEFMTllrnplylGFIFIGYLLIKALWVQLDisgefrngalpglislSTKFLPTVMNLLKKLAeegqipatnnnpqrnpvrasmnhqngvstseisstassgvtssgngteyssprkee

marcagiepctlimdlegtDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRlfsprkttlmfvirdktrtplenlepvlrEDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKgvveakareesgrvLMRMKDRFTslfshdsdsmprvwtgkedirGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEankrnnnwlPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEegqipatnnnpqrnpvRASMNHQNGVSTSEisstassgvtssgngteyssprkee

MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVAlssfeekeelfkeQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITklarsaslkllsVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRASMNHQNgvstseisstassgvtssgngtEYSSPRKEE

*****GIEPCTLIMDL*****************QSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP******ETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDM**************Y************************************RVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALV******************************TLITPVQCKSLWRQFKSETEYSVTQAIS******RNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKL*********************************************************

************IMDLEG****************SALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEE************ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDA**********FSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTL*************************WEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAI***********WLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNL*************************************************************

MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDP***********SKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRASMN**********************************

***CAGIEPCTLIMDLEGTD*RERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALV********************STWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEG*****************************************************

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVAxxxxxxxxxxxxxxxxxxxxxFYHSVAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRASMNHQNGVSTSEISSTASSGVTSSGNGTEYSSPRKEE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		731	2.2.26 [Sep-21-2011]
P93042		802	Protein ROOT HAIR DEFECTI	yes	no	0.958	0.874	0.776	0.0
Q9SSN0		795	Protein ROOT HAIR DEFECTI	no	no	0.937	0.861	0.763	0.0
Q0JLS6		806	Protein ROOT HAIR DEFECTI	yes	no	0.990	0.898	0.704	0.0
Q9FKE9		834	Protein ROOT HAIR DEFECTI	no	no	0.990	0.868	0.641	0.0
Q2QMH2		854	Protein ROOT HAIR DEFECTI	no	no	0.926	0.792	0.635	0.0
Q2R224		823	Protein ROOT HAIR DEFECTI	no	no	0.916	0.814	0.592	0.0
A8N5E5		784	Protein SEY1 OS=Coprinops	N/A	no	0.912	0.850	0.285	1e-73
Q54W90		894	Protein SEY1 homolog OS=D	yes	no	0.796	0.651	0.292	8e-71
B0D0N9		785	Protein SEY1 OS=Laccaria	N/A	no	0.822	0.765	0.292	3e-68
Q4PEQ0		845	Protein SEY1 OS=Ustilago	N/A	no	0.896	0.775	0.271	1e-65

>sp\|P93042\|RHD3_ARATH Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1	Back alignment and function desciption

 Score = 1105 bits (2858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/701 (77%), Positives = 619/701 (88%)

Query: 1   MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA 60
           +ARCAGIEPCT++MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA
Sbjct: 80  IARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA 139

Query: 61  ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 120
           ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH
Sbjct: 140 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 199

Query: 121 METPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFS 180
            ETPLS+FFNVEVVALSS+EEKEE FKEQV +LRQRF+ SVAPGGLAGDRRGVVPA+ F+
Sbjct: 200 KETPLSDFFNVEVVALSSYEEKEEQFKEQVYNLRQRFFQSVAPGGLAGDRRGVVPANAFA 259

Query: 181 FSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPIS 240
           FSA ++W+VIK+NKDLDLPAHKVMVATVRCEEIANEK+SSF ANE W ELE AVQSGP+S
Sbjct: 260 FSAKQMWQVIKDNKDLDLPAHKVMVATVRCEEIANEKFSSFIANENWRELEEAVQSGPVS 319

Query: 241 SFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTL 300
            FG+KLSSIL+  LS YD E  YF+E VRS+KR+QL++KLLQLVQP FQ +LGH+R+G L
Sbjct: 320 GFGRKLSSILQASLSEYDTEATYFEESVRSSKRQQLQEKLLQLVQPTFQDVLGHLRAGAL 379

Query: 301 DKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDID 360
           + FK+AF+KAL  GEGFSS+A  C++  ++ FD+ C +AVIEQA WD SK R+K +RDI+
Sbjct: 380 ENFKNAFEKALDAGEGFSSSAKSCAQSCISKFDKGCEEAVIEQAKWDTSKTREKLERDIE 439

Query: 361 AHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGF 420
           AHI+SVR AKL ELT ++E+KLN +LSGPVEALLDGAN+ETWPAIRKLLR E E A+ G 
Sbjct: 440 AHISSVRTAKLAELTTLYESKLNVALSGPVEALLDGANDETWPAIRKLLRREGELAVYGL 499

Query: 421 SDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMP 480
           S+AL GF+MDEET+ KMLA LENYA+G+VE KA+EE+GR +MRMKDRF ++FSHDSDSMP
Sbjct: 500 SNALSGFEMDEETRSKMLADLENYARGIVETKAKEEAGRAMMRMKDRFATIFSHDSDSMP 559

Query: 481 RVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSI 540
           RVWTGKEDIR ITK+ARSASLKLLSVMA IRLDDE DNIE TLTLAL +S  N AT++SI
Sbjct: 560 RVWTGKEDIRAITKMARSASLKLLSVMAVIRLDDELDNIEKTLTLALFNSTGNNATSKSI 619

Query: 541 TNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPP 600
           +  D LASSTWE+V   KTLITPVQCKSLWRQFK+ETEY+VTQAISAQEAN+RNNNWLPP
Sbjct: 620 STIDSLASSTWEKVAPEKTLITPVQCKSLWRQFKNETEYTVTQAISAQEANRRNNNWLPP 679

Query: 601 PWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLS 660
           PWAI A++VLGFNEFMTLLRNPL+L  +F+GYL+ KALWVQL+ISGEF+NG LPGL+SLS
Sbjct: 680 PWAILALVVLGFNEFMTLLRNPLWLLVLFVGYLVSKALWVQLNISGEFQNGVLPGLLSLS 739

Query: 661 TKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRASMNHQNG 701
           TKF+PTVMNLLKKLAEEGQ P TN+N   N    S    NG
Sbjct: 740 TKFIPTVMNLLKKLAEEGQAPPTNSNQSMNSTAQSEVTTNG 780

Probable GTP-binding protein involved in cell wall expansion. Required for appropriate root and root hair cells enlargement. May inhibit vacuole enlargement during root hair cell expansion. Plays a role in cell wall biosynthesis and actin organization. Seems to act independently from auxin and ethylene pathways. May regulate membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp\|Q9SSN0\|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana GN=At1g72960 PE=2 SV=2	Back alignment and function description

>sp\|Q0JLS6\|RHD3_ORYSJ Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica GN=RHD3 PE=2 SV=1	Back alignment and function description

>sp\|Q9FKE9\|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=2 SV=1	Back alignment and function description

>sp\|Q2QMH2\|RHD31_ORYSJ Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica GN=Os12g0604600 PE=2 SV=1	Back alignment and function description

>sp\|Q2R224\|RHD32_ORYSJ Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Oryza sativa subsp. japonica GN=Os11g0582300 PE=2 SV=1	Back alignment and function description

>sp\|A8N5E5\|SEY1_COPC7 Protein SEY1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=SEY1 PE=3 SV=1	Back alignment and function description

>sp\|Q54W90\|SEY1_DICDI Protein SEY1 homolog OS=Dictyostelium discoideum GN=DDB_0206311 PE=3 SV=1	Back alignment and function description

>sp\|B0D0N9\|SEY1_LACBS Protein SEY1 OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=SEY1 PE=3 SV=1	Back alignment and function description

>sp\|Q4PEQ0\|SEY1_USTMA Protein SEY1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEY1 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		731
255572949		813	Protein SEY1, putative [Ricinus communis	0.998	0.897	0.825	0.0
359482513		871	PREDICTED: protein ROOT HAIR DEFECTIVE 3	0.998	0.838	0.804	0.0
297743083		1029	unnamed protein product [Vitis vinifera]	0.998	0.709	0.804	0.0
356522460		808	PREDICTED: protein ROOT HAIR DEFECTIVE 3	0.991	0.897	0.799	0.0
356526017		808	PREDICTED: protein ROOT HAIR DEFECTIVE 3	0.991	0.897	0.800	0.0
224134563		716	predicted protein [Populus trichocarpa]	0.976	0.997	0.805	0.0
224128492		723	predicted protein [Populus trichocarpa]	0.935	0.946	0.822	0.0
147790717		857	hypothetical protein VITISV_010618 [Viti	0.950	0.810	0.762	0.0
356557329		812	PREDICTED: protein ROOT HAIR DEFECTIVE 3	0.994	0.895	0.762	0.0
449447853		818	PREDICTED: protein ROOT HAIR DEFECTIVE 3	0.998	0.892	0.757	0.0

>gi\|255572949\|ref\|XP_002527405.1\| Protein SEY1, putative [Ricinus communis] gi\|223533215\|gb\|EEF34971.1\| Protein SEY1, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1239 bits (3206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/732 (82%), Positives = 672/732 (91%), Gaps = 2/732 (0%)

Query: 1   MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA 60
           +ARCAGIEPCTL+MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA
Sbjct: 83  LARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA 142

Query: 61  ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 120
           ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD+VPKPQ H
Sbjct: 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDAVPKPQEH 202

Query: 121 METPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFS 180
            ETPLSEFFNVEVVALSS+EEKEE FKEQVASLRQRF+HS+APGGLAGDRRGVVPASGFS
Sbjct: 203 KETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFFHSIAPGGLAGDRRGVVPASGFS 262

Query: 181 FSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPIS 240
           FSA ++WKVIKENKDLDLPAHKVMVATVRCEEIANEKY++F  NEEW ++E AVQSGP+S
Sbjct: 263 FSAQQMWKVIKENKDLDLPAHKVMVATVRCEEIANEKYANFTTNEEWHQIEEAVQSGPVS 322

Query: 241 SFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTL 300
            FGKKLSS L T  S YD E +YFDEGVRSAKRKQLE+KLLQLVQPA QSMLGHIRSGTL
Sbjct: 323 GFGKKLSSTLSTSFSEYDAEAIYFDEGVRSAKRKQLEEKLLQLVQPAHQSMLGHIRSGTL 382

Query: 301 DKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDID 360
           DKFK+AFDKAL+ GEGFSSAA+ C+++YM +FDE C DA+IEQA+WD SK RDK +RDID
Sbjct: 383 DKFKEAFDKALAAGEGFSSAAYSCTQYYMTVFDEGCTDAIIEQASWDTSKVRDKLRRDID 442

Query: 361 AHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGF 420
           AH+ASVRAAKL ELT+ FEAKLNE+LSGPVEALLDGA +ETWPAIRKLL+ E+ESA+SG 
Sbjct: 443 AHVASVRAAKLSELTSSFEAKLNEALSGPVEALLDGATSETWPAIRKLLQRESESAVSGL 502

Query: 421 SDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMP 480
           S AL GFDMD+++K+KML+SLE YA+GVVEAKA+EE+GRVL+RMKDRF+ LFSHDSDSMP
Sbjct: 503 SSALAGFDMDKQSKDKMLSSLETYARGVVEAKAKEEAGRVLIRMKDRFSMLFSHDSDSMP 562

Query: 481 RVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAA-TNRS 539
           RVWTGKEDIR ITK ARSASLKLLSVM AIRLDDE DN+ESTL+   +D+ +NAA T RS
Sbjct: 563 RVWTGKEDIRAITKTARSASLKLLSVMVAIRLDDEVDNVESTLSSVFLDTKNNAAVTERS 622

Query: 540 ITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLP 599
           IT  DPLASSTW++VPSSKTLITPVQCKSLWRQFK+ETEYSVTQAISAQEANKRNNNWLP
Sbjct: 623 ITKTDPLASSTWDEVPSSKTLITPVQCKSLWRQFKAETEYSVTQAISAQEANKRNNNWLP 682

Query: 600 PPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISL 659
           PPWAI A++VLGFNEFMTLLRNPLYLGFIF+ +LL+KALWVQLD+SGEFRNGALPGLISL
Sbjct: 683 PPWAIVALVVLGFNEFMTLLRNPLYLGFIFVVFLLVKALWVQLDVSGEFRNGALPGLISL 742

Query: 660 STKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRASMNHQNGVSTSEISSTASSGVTSSG 719
           STKFLPT+MNL+KKLAEEGQ PAT N+PQRNP  A+ + +NGV +S+  STASSGVTS+ 
Sbjct: 743 STKFLPTIMNLIKKLAEEGQKPAT-NDPQRNPALAAKSFRNGVGSSDDMSTASSGVTSTE 801

Query: 720 NGTEYSSPRKEE 731
           NGTE+SS  K++
Sbjct: 802 NGTEFSSASKDD 813

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359482513\|ref\|XP_002279673.2\| PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297743083\|emb\|CBI35950.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356522460\|ref\|XP_003529864.1\| PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356526017\|ref\|XP_003531616.1\| PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224134563\|ref\|XP_002327435.1\| predicted protein [Populus trichocarpa] gi\|222835989\|gb\|EEE74410.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224128492\|ref\|XP_002329017.1\| predicted protein [Populus trichocarpa] gi\|222839688\|gb\|EEE78011.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147790717\|emb\|CAN63206.1\| hypothetical protein VITISV_010618 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356557329\|ref\|XP_003546969.1\| PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449447853\|ref\|XP_004141681.1\| PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		731
TAIR\|locus:2087964		802	RHD3 "ROOT HAIR DEFECTIVE 3" [	0.950	0.866	0.748	3.4e-283
TAIR\|locus:2153343		834	RL2 "AT5G45160" [Arabidopsis t	0.993	0.870	0.612	1.1e-238
DICTYBASE\|DDB_G0279823		894	DDB_G0279823 "Protein SEY1" [D	0.419	0.343	0.374	4.2e-74
POMBASE\|SPAC222.14c		762	SPAC222.14c "GTP binding prote	0.679	0.652	0.274	5.9e-54
SGD\|S000005691		776	SEY1 "Dynamin-like GTPase that	0.822	0.774	0.258	7.3e-50
CGD\|CAL0005364		790	NAG6 [Candida albicans (taxid:	0.812	0.751	0.251	3.1e-44
UNIPROTKB\|Q9C0L9		790	SEY1 "Protein SEY1" [Candida a	0.812	0.751	0.251	3.1e-44
UNIPROTKB\|Q525S7		848	SEY1 "Protein SEY1" [Magnaport	0.284	0.245	0.417	4.1e-41
ASPGD\|ASPL0000051853		858	AN1085 [Emericella nidulans (t	0.164	0.139	0.480	1.5e-34
GENEDB_PFALCIPARUM\|PF14_0159		937	PF14_0159 "hypothetical protei	0.391	0.305	0.321	5.4e-34

TAIR\|locus:2087964 RHD3 "ROOT HAIR DEFECTIVE 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2721 (962.9 bits), Expect = 3.4e-283, P = 3.4e-283
 Identities = 520/695 (74%), Positives = 593/695 (85%)

Query:     1 MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA 60
             +ARCAGIEPCT++MDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA
Sbjct:    80 IARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA 139

Query:    61 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 120
             ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH
Sbjct:   140 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 199

Query:   121 METPLSEFFNVEVVAXXXXXXXXXXXXXQVASLRQRFYHSVAPGGLAGDRRGVVPASGFS 180
              ETPLS+FFNVEVVA             QV +LRQRF+ SVAPGGLAGDRRGVVPA+ F+
Sbjct:   200 KETPLSDFFNVEVVALSSYEEKEEQFKEQVYNLRQRFFQSVAPGGLAGDRRGVVPANAFA 259

Query:   181 FSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPIS 240
             FSA ++W+VIK+NKDLDLPAHKVMVATVRCEEIANEK+SSF ANE W ELE AVQSGP+S
Sbjct:   260 FSAKQMWQVIKDNKDLDLPAHKVMVATVRCEEIANEKFSSFIANENWRELEEAVQSGPVS 319

Query:   241 SFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTL 300
              FG+KLSSIL+  LS YD E  YF+E VRS+KR+QL++KLLQLVQP FQ +LGH+R+G L
Sbjct:   320 GFGRKLSSILQASLSEYDTEATYFEESVRSSKRQQLQEKLLQLVQPTFQDVLGHLRAGAL 379

Query:   301 DKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDID 360
             + FK+AF+KAL  GEGFSS+A  C++  ++ FD+ C +AVIEQA WD SK R+K +RDI+
Sbjct:   380 ENFKNAFEKALDAGEGFSSSAKSCAQSCISKFDKGCEEAVIEQAKWDTSKTREKLERDIE 439

Query:   361 AHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGF 420
             AHI+SVR AKL ELT ++E+KLN +LSGPVEALLDGAN+ETWPAIRKLLR E E A+ G 
Sbjct:   440 AHISSVRTAKLAELTTLYESKLNVALSGPVEALLDGANDETWPAIRKLLRREGELAVYGL 499

Query:   421 SDALYGFDMDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSMP 480
             S+AL GF+MDEET+ KMLA LENYA+G+VE KA+EE+GR +MRMKDRF ++FSHDSDSMP
Sbjct:   500 SNALSGFEMDEETRSKMLADLENYARGIVETKAKEEAGRAMMRMKDRFATIFSHDSDSMP 559

Query:   481 RVWTGKEDIRGITXXXXXXXXXXXXVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSI 540
             RVWTGKEDIR IT            VMA IRLDDE DNIE TLTLAL +S  N AT++SI
Sbjct:   560 RVWTGKEDIRAITKMARSASLKLLSVMAVIRLDDELDNIEKTLTLALFNSTGNNATSKSI 619

Query:   541 TNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPP 600
             +  D LASSTWE+V   KTLITPVQCKSLWRQFK+ETEY+VTQAISAQEAN+RNNNWLPP
Sbjct:   620 STIDSLASSTWEKVAPEKTLITPVQCKSLWRQFKNETEYTVTQAISAQEANRRNNNWLPP 679

Query:   601 PWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQLDISGEFRNGALPGLISLS 660
             PWAI A++VLGFNEFMTLLRNPL+L  +F+GYL+ KALWVQL+ISGEF+NG LPGL+SLS
Sbjct:   680 PWAILALVVLGFNEFMTLLRNPLWLLVLFVGYLVSKALWVQLNISGEFQNGVLPGLLSLS 739

Query:   661 TKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRAS 695
             TKF+PTVMNLLKKLAEEGQ P TN+N   N    S
Sbjct:   740 TKFIPTVMNLLKKLAEEGQAPPTNSNQSMNSTAQS 774

GO:0005634 "nucleus" evidence=ISM

GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA

GO:0005525 "GTP binding" evidence=ISS

GO:0009932 "cell tip growth" evidence=RCA;IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016051 "carbohydrate biosynthetic process" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR\|locus:2153343 RL2 "AT5G45160" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0279823 DDB_G0279823 "Protein SEY1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC222.14c SPAC222.14c "GTP binding protein Sey1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

SGD\|S000005691 SEY1 "Dynamin-like GTPase that mediates homotypic ER fusion" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

CGD\|CAL0005364 NAG6 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9C0L9 SEY1 "Protein SEY1" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

UNIPROTKB\|Q525S7 SEY1 "Protein SEY1" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000051853 AN1085 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF14_0159 PF14_0159 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SSN0	RHD31_ARATH	3, ., 6, ., 5, ., -	0.7635	0.9370	0.8616	no	no
Q0JLS6	RHD3_ORYSJ	3, ., 6, ., 5, ., -	0.7042	0.9904	0.8982	yes	no
P93042	RHD3_ARATH	3, ., 6, ., 5, ., -	0.7760	0.9589	0.8740	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.5	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_440243	hypothetical protein (717 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		731
pfam05879		743	pfam05879, RHD3, Root hair defective 3 GTP-binding	0.0
cd01851		224	cd01851, GBP, Guanylate-binding protein (GBP) fami	2e-34

>gnl\|CDD\|218791 pfam05879, RHD3, Root hair defective 3 GTP-binding protein (RHD3)	Back alignment and domain information

 Score =  924 bits (2391), Expect = 0.0
 Identities = 342/728 (46%), Positives = 454/728 (62%), Gaps = 40/728 (5%)

Query: 1   MARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGR 57
           +A+C GI   EP  L+MD+EGTDGRERGED   FE++SALFALA S+++++NMW H +G 
Sbjct: 37  LAKCKGIGNMEPNILVMDVEGTDGRERGEDQD-FERKSALFALATSEVLIVNMWEHQVGL 95

Query: 58  EQAANKPLLKTVFQVMMRLF-----SPRKTTLMFVIRDKTR-TPLENLEPVLREDIQKIW 111
            Q AN  LLKTVF+V ++LF     +P KT L+FVIRD    TPLENLE  LRED+QKIW
Sbjct: 96  YQGANMGLLKTVFEVNLQLFGKDKDNPHKTLLLFVIRDHVGVTPLENLEDTLREDLQKIW 155

Query: 112 DSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS--VAPGGLAGD 169
           DS+ KP     +PL++FF+VE VAL   E +E+ FKE+V  LRQRF HS  + PGG A +
Sbjct: 156 DSLSKPAGLENSPLNDFFDVEFVALPHKELQEDQFKEEVKKLRQRFVHSKGIEPGGFAPE 215

Query: 170 RRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAAN----- 224
             G +PA GFSF A +IW  I+ NKDLDLP  +V+VA  RC+EIANE +  F        
Sbjct: 216 YHGRIPADGFSFYAEQIWDQIENNKDLDLPTQQVLVAQFRCDEIANEVFEEFITAYDPLE 275

Query: 225 EEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLV 284
           E+W EL+ A + G +   G KL+SI E CLS YD E   +++GV   KR++LE+KL   +
Sbjct: 276 EKWRELKEAGEGGLLGGLGAKLASIREKCLSEYDTEASRYNKGVYQEKRQELEEKLDSHL 335

Query: 285 QPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQA 344
           +P FQ+ LG +  G L+ FK+A   AL  GEGF+ +        +  FDE C    IEQA
Sbjct: 336 KPTFQAQLGALHKGLLESFKEAVSSALKAGEGFAESVKDGKTKCVEKFDEECESLAIEQA 395

Query: 345 NWDMS-KARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWP 403
            W  S K R K ++DIDAH A +R  +L ELT  +E KL  +LS PVE LL+  N ETW 
Sbjct: 396 TWSNSDKIRLKLEKDIDAHSARLRKEELKELTNRYEKKLVSALSEPVELLLNKLNKETWD 455

Query: 404 AIRKLLRCETESAISGFSDALYGFDMDEETKEKMLASLENYAKGVVEAKAREE--SGRVL 461
            + KL + E E A+S F+D   GFD+ EE  +KML +L+  + GV+  K  EE    ++L
Sbjct: 456 TVLKLFKREVEDAVSRFTDRKSGFDLSEEENDKMLKNLKRKSWGVLRTKIHEEASEVKLL 515

Query: 462 MRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIES 521
           MR++DRF   F +DSD MPR+WTGKEDI GI K+AR  +LKLL V++ IRL D +D I  
Sbjct: 516 MRLRDRFEDKFRYDSDGMPRLWTGKEDIEGIYKVAREHALKLLPVLSRIRLSDGSDPIPD 575

Query: 522 TLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSV 581
           TL + L     N A   S+T+ D L SS WE+VPS  T++T VQ KSLW QFK E +Y+V
Sbjct: 576 TLIVGLEPGTVNPADEESVTSIDGLDSSEWEEVPSFATILTEVQKKSLWVQFKKEADYTV 635

Query: 582 TQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLLIKALWVQ 641
           T+A    + +  NNN   PP+    ++VLG+NEFM +LRNPLY   +F+  L +  L+ Q
Sbjct: 636 TEA----KRSIINNNTQIPPYFYVLLLVLGWNEFMAVLRNPLYFLLLFVLGLTVYVLY-Q 690

Query: 642 LDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQIPATNNNPQRNPVRASMNHQNG 701
           L + G             + K LPT MNLL+ LA++        + +   VRAS   ++ 
Sbjct: 691 LGLWG------------PAVKVLPTAMNLLRVLAKDKLREFLQEDHE---VRASQEMKDS 735

Query: 702 VSTSEISS 709
            S   ISS
Sbjct: 736 SSPESISS 743

This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement. The family also contains the homologous yeast synthetic enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking. Length = 743

>gnl\|CDD\|206650 cd01851, GBP, Guanylate-binding protein (GBP) family (N-terminal domain)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		731
KOG2203		772	consensus GTP-binding protein [General function pr	100.0
PF05879		742	RHD3: Root hair defective 3 GTP-binding protein (R	100.0
cd01851		224	GBP Guanylate-binding protein (GBP), N-terminal do	99.75
PF02263		260	GBP: Guanylate-binding protein, N-terminal domain;	96.68
PF05879		742	RHD3: Root hair defective 3 GTP-binding protein (R	93.85

>KOG2203 consensus GTP-binding protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=3.4e-199  Score=1604.04  Aligned_cols=663  Identities=62%  Similarity=0.989  Sum_probs=641.9

Q ss_pred             CCccCCCCCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHhhhhheeeccccccccccccCchhHHHHHHHHHhhcCCC
Q 004781            1 MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR   80 (731)
Q Consensus         1 ~~~~~~~~~~~lVmDvEGTDgrERGED~q~FErksALFALA~SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~LF~~~   80 (731)
                      ||||.|++||||||||||||||||||| |+|||||||||+|+|||+|||||||||||||||||+||||||||||+||+|+
T Consensus        80 lar~~~i~p~i~vmDvEGTDGrERGED-qdFErksALFaiavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~r  158 (772)
T KOG2203|consen   80 LARCAGIEPCILVMDVEGTDGRERGED-QDFERKSALFAIAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPR  158 (772)
T ss_pred             HHhhcCCCCceEEEecccCCccccccc-ccHHHHhHHHHHhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCC
Confidence            699999999999999999999999999 9999999999999999999999999999999999999999999999999997


Q ss_pred             c--eEEEEEeeCC-CCCChhchhHHHHHHHHHHhhhCCCCCCCCCCCCcceEEEEEeecCCccccHHHHHHHHHHHHHhc
Q 004781           81 K--TTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRF  157 (731)
Q Consensus        81 K--t~LLFVIRD~-~~tple~L~~~l~~dl~~IW~~v~KP~~~~~~~l~DfFd~~f~~LpHk~lq~e~F~~~v~~Lr~rF  157 (731)
                      |  |+|||||||| +.||+|+|+++|++||+|||++|+||++|++++|+|||||+|+|||||++++++|.++|+.||+||
T Consensus       159 k~k~~LlFVIRD~~~~TplenLe~~l~~dlqkIW~sl~KPe~~e~s~l~DfFdv~~v~Ls~~~~kedqF~e~V~~LrqrF  238 (772)
T KOG2203|consen  159 KNKTLLLFVIRDKTGVTPLENLEDVLREDLQKIWDSLSKPEGHENSPLNDFFDVEFVGLSHKELKEDQFKEQVASLRQRF  238 (772)
T ss_pred             CCceEEEEEEecccCCCchHHhhHHHHHHHHHHHHhcCCcccccCCchhhhhceeeeecchHHHHHHHHHHHHHHHHHHH
Confidence            6  9999999999 679999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC-CCCCCCCCCCCCCccCCChhhhHHHHHHHhhhcCCCCCchhHHHHHhhchHHHHHHHHHhhhhhhhHHHHHHHHhc
Q 004781          158 YHS-VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQS  236 (731)
Q Consensus       158 ~~~-~~~~~l~~~~~~~iP~dG~~~ya~~iWe~I~~NkDLDLPtqq~mlA~~RCdEI~~e~l~~f~~~~~~~~l~~~v~~  236 (731)
                      +++ +.|.+++++||++||||||++|+++||++|++||||||||||+|||+|||+||++|+++.|.+++.|..+.+.++.
T Consensus       239 v~s~~s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g  318 (772)
T KOG2203|consen  239 VHSGISPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQG  318 (772)
T ss_pred             HhcCCCCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcC
Confidence            998 8888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 004781          237 GPISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEG  316 (731)
Q Consensus       237 g~v~~fg~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~f~~~L~~l~~~~l~~fk~~l~~~l~~~~~  316 (731)
                      |.+++||+++..|+++||++||++|+||+++||++||++|..++++.++|.|+.+|+|||..++++||.++++.++.+++
T Consensus       319 ~l~s~l~~kL~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~g  398 (772)
T KOG2203|consen  319 NLVSGLGKKLSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEG  398 (772)
T ss_pred             CCccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhHhHHHHHHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHhhcC
Q 004781          317 FSSAAHHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDG  396 (731)
Q Consensus       317 F~~~~~~~~~~~~~~F~~~~~~~~i~~~~w~~s~~~~~l~~~l~~~~~~~R~~~l~~l~~~~~k~l~~~l~~~v~~ll~~  396 (731)
                      |++++..+.++|+..|+++|+++.++|+.|+.++++.+|.++|++|+.++|..+|++++..+++++..++++||+.+|++
T Consensus       399 F~es~~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~  478 (772)
T KOG2203|consen  399 FSESVADGKQSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDG  478 (772)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhhhhhhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccc
Q 004781          397 ANNETWPAIRKLLRCETESAISGFSDALYGFD--MDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSH  474 (731)
Q Consensus       397 ~~~d~W~~I~~~f~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~lr~~a~~~l~~~i~e~a~~ll~~lkdrFe~~Fry  474 (731)
                      ++.++||.|+++|++....++..+++.+.||+  +++++++++++.||.+||..++.|+||++++++++||+||+++|||
T Consensus       479 ~s~evW~ti~n~f~~e~n~av~~~~~~~~~f~~~~de~t~~~m~~nlk~~a~~~~etk~~ee~~~il~rmrdRFe~vFr~  558 (772)
T KOG2203|consen  479 ASKEVWDTIRNLFRRETNTAVYGLSNAVYGFEIGLDEETRDKMVKNLKNYAWGTVETKAKEEADRILMRMRDRFETVFRY  558 (772)
T ss_pred             cccccHHHHHHHHHhccchhHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999998  9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccCCccchHHHHHHHHHHHHHHHHHHHhhccCCCccchhhhhhhhccCCCCCccccCCCCCCCCCCCCccCCC
Q 004781          475 DSDSMPRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQV  554 (731)
Q Consensus       475 D~~g~PR~W~~~ddI~~if~~Ar~~aL~lL~vla~~Rl~d~~~~i~~~l~~~l~d~~~~~~~~~~~~~~dpl~~~~~~~~  554 (731)
                      |.|||||+|++++||++||+.||++||+||+||+.||++|+   |+.+|+.++.+...+.+++  +.+.||++++     
T Consensus       559 Dsd~mPrlWk~kedI~~~~r~ar~~aL~llsVla~irlsDn---ie~~l~v~l~~~e~~~~s~--i~t~d~lass-----  628 (772)
T KOG2203|consen  559 DSDGMPRLWKGKEDIDAITRVARSAALKLLSVLAVIRLSDN---IEKTLTVALADEESNETSS--IYTNDPLASS-----  628 (772)
T ss_pred             cCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHhheecCC---ccccCccccccCCCCCCCc--ccccCccccC-----
Confidence            99999999999999999999999999999999999999975   4555677888877654443  5578999866     


Q ss_pred             CCCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCCCCCcHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHH
Q 004781          555 PSSKTLITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRNPLYLGFIFIGYLL  634 (731)
Q Consensus       555 ~~~~~lLs~~~~~~i~~qFk~e~~~~~~~Al~~qEakRs~~~~~iP~W~~~ll~vLGwNEfmavLrNPl~l~l~lv~~~~  634 (731)
                      .+++|||||.||++||+||| +++|++.||+.+||++   ++++||||+|++|+||||||||++|||||||+++||++++
T Consensus       629 ~~~~tilt~vq~ksi~~qFk-rt~~~v~~d~k~s~~n---t~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~v~~~~  704 (772)
T KOG2203|consen  629 ASFATILTPVQCKSIWRQFK-RTEYTVTQDIKRSEIN---TNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLFVGGLV  704 (772)
T ss_pred             CccceeccHHHHHHHHHHHH-HhhhHHHHHHHHHHhc---CCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHHHHHHH
Confidence            78899999999999999999 8899999998888888   4556788999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccccccccccchhhhhhhhhHHHHHHHHHHHhcCC
Q 004781          635 IKALWVQLDISGEFRNGALPGLISLSTKFLPTVMNLLKKLAEEGQ  679 (731)
Q Consensus       635 ~~~~~vqldi~~~~~~g~l~g~i~~s~k~lp~~~~~~k~l~~~~~  679 (731)
                      +|++|+|++|+ +||+|+|||++|++++|+|++||++++++.+||
T Consensus       705 ~~~l~~q~~i~-ef~~~vl~~~~s~~~k~~~tv~n~lrq~ave~~  748 (772)
T KOG2203|consen  705 SKALWVQGLIP-EFQNGVLPGVLSISGKFRTTVMNLLRQLAVEGQ  748 (772)
T ss_pred             HHHHHHhccch-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999 899999999999999999999999999999999

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins	Back alignment and domain information

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain	Back alignment and domain information

>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma	Back alignment and domain information

>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		731
3q5d_A		447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* Length = 447	Back alignment and structure

 Score = 68.9 bits (167), Expect = 2e-12
 Identities = 41/300 (13%), Positives = 92/300 (30%), Gaps = 36/300 (12%)

Query: 6   GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPL 65
           G +   L+MD +GT   +    D      + +FAL+     +         +E       
Sbjct: 137 GKKVAVLLMDTQGTFDSQSTLRD-----SATVFALSTMISSIQVYNLSQNVQEDDLQHLQ 191

Query: 66  LKTVF--QVMMRLFSPRKTTLMFVIRDKT---------RTPLENLEPVLR------EDIQ 108
           L T +    M   F     +L+F++RD +             + LE  L+      E++Q
Sbjct: 192 LFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQ 251

Query: 109 KIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRF------YHSVA 162
            +   +     ++   L     ++V    +F+ K +   ++     +          S+ 
Sbjct: 252 NVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLD 311

Query: 163 PGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFA 222
              + G++   +   G         K+ +  +     +     A             ++ 
Sbjct: 312 IKEINGNK---ITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTY- 367

Query: 223 ANEEWCELEAAVQSGPIS--SFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKL 280
              +  E         ++      K   + E  +  + G      E       +QLE ++
Sbjct: 368 --NKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEI 425

PyMOL of 3q5d

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		731
3q5d_A		447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	99.92
1f5n_A		592	Interferon-induced guanylate-binding protein 1; GB	99.6
4ido_A		457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	99.1

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*	Back alignment and structure

Probab=99.92  E-value=4.9e-24  Score=237.44  Aligned_cols=263  Identities=15%  Similarity=0.122  Sum_probs=204.6

Q ss_pred             CCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHh--hhhheeeccccccccccccCchhHHHHHHHHHhh----cCCCc
Q 004781            8 EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--SDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL----FSPRK   81 (731)
Q Consensus         8 ~~~~lVmDvEGTDgrERGED~q~FErksALFALA~--SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~L----F~~~K   81 (731)
                      +..+++||.||+++.+|     ++++.++|||||+  |+++|+|+    .|.++++++..|++|+|++...    |.+..
T Consensus       139 ~~~vvllDTeG~~~~~~-----~~~~d~~ifal~~lLSs~~IyN~----~~~i~~~~l~~L~~~~e~~~~~~~~~~~~~f  209 (447)
T 3q5d_A          139 KVAVLLMDTQGTFDSQS-----TLRDSATVFALSTMISSIQVYNL----SQNVQEDDLQHLQLFTEYGRLAMEETFLKPF  209 (447)
T ss_dssp             EEEEEEEEEECCCSSHH-----HHHHHHHHHHHHHHHCSEEEEEE----SSSCCHHHHHHHHHHHHHHHHTSCCCSSCSE
T ss_pred             cceEEEEcCCccccccc-----chhhhHHHHHHHHHHhhHHHHhh----cccccHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence            34699999999999987     7999999999998  99999999    5899999999999999998742    22357


Q ss_pred             eEEEEEeeCCCCC-ChhchhHHHHHHHHHHhhhCC-CCCCCCC--CCCcceE-EEEEeecCCcccc--------------
Q 004781           82 TTLMFVIRDKTRT-PLENLEPVLREDIQKIWDSVP-KPQAHME--TPLSEFF-NVEVVALSSFEEK--------------  142 (731)
Q Consensus        82 t~LLFVIRD~~~t-ple~L~~~l~~dl~~IW~~v~-KP~~~~~--~~l~DfF-d~~f~~LpHk~lq--------------  142 (731)
                      ..|+||||||+.. ..+.=..+-.+.|++++.... ++++...  ..|.+|| ++++++|||..++              
T Consensus       210 p~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~~~~~~~~~~~r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L  289 (447)
T 3q5d_A          210 QSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEI  289 (447)
T ss_dssp             EEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSSTTCSSSSCCHHHHHHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGS
T ss_pred             CceEEEEeeccccccccCCCCCHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCceEEeccCcccchhhhhhhhcchhhc
Confidence            7999999999531 111111233555666665442 2333322  4689999 7999999999743              


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCC--CCCCCccCCChhhhHHHHHHHhhhcCCCCCchhHHHHHhhchHHHHHHHHHh
Q 004781          143 EELFKEQVASLRQRFYHSVAPGGLAG--DRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSS  220 (731)
Q Consensus       143 ~e~F~~~v~~Lr~rF~~~~~~~~l~~--~~~~~iP~dG~~~ya~~iWe~I~~NkDLDLPtqq~mlA~~RCdEI~~e~l~~  220 (731)
                      .++|.+++..|+..+..+.   .+.+  .....|++.+|..|++++|++|.+|+..++|++.+++|+++|+++..++++.
T Consensus       290 ~~~F~~~l~~l~~~i~~~~---~~~~K~~~G~~vtg~~L~~~~~~yv~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~  366 (447)
T 3q5d_A          290 DDEFIKNLKILIPWLLSPE---SLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDT  366 (447)
T ss_dssp             CHHHHHHHHHHHHHHHSTT---TCCCCEETTEECBHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCcc---cccccccCCEeecHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            2789999999999998532   2322  2223455555999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHHHHHhc-CC---cchHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHH
Q 004781          221 FAANEEWCELEAAVQS-GP---ISSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPA  287 (731)
Q Consensus       221 f~~~~~~~~l~~~v~~-g~---v~~fg~~~~~i~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~~  287 (731)
                      |..     .+++.+.. .+   .++|........++|++.|++.+.++.+.++++++++|+.+|...+...
T Consensus       367 Y~~-----~m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~~~~~~L~~~l~~~~~~~  432 (447)
T 3q5d_A          367 YNK-----KMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQY  432 (447)
T ss_dssp             HHH-----HHHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            975     23333321 22   2469999999999999999999966689999999999999988775544

PyMOL of 3q5d

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*	Back alignment and structure

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		731
d1f5na2		277	c.37.1.8 (A:7-283) Interferon-induced guanylate-bi	2e-18

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 2e-18
 Identities = 23/199 (11%), Positives = 55/199 (27%), Gaps = 48/199 (24%)

Query: 7   IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLL 66
            +P  +++ L+     +  + D   +      A+ +S   + N       +       + 
Sbjct: 81  KKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVT 140

Query: 67  KTVFQVMMRL--------------FSPRKTTLMFVIRD---------KTRTPLENLEPVL 103
           +   ++  +               F       ++ +RD         +  TP E L   L
Sbjct: 141 ELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSL 200

Query: 104 ----------------REDIQKIWDSVPK---PQAHMETPLSEFFNVEVVALSSFEEKEE 144
                           R  I+K +         +      L++   ++   L      + 
Sbjct: 201 KLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEEL------DP 254

Query: 145 LFKEQVASLRQRFYHSVAP 163
            F +QVA      + +   
Sbjct: 255 EFVQQVADFCSYIFSNSKT 273

PyMOL of d1f5na2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		731
d1f5na2		277	Interferon-induced guanylate-binding protein 1 (GB	99.47

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.9e-15  Score=153.93  Aligned_cols=157  Identities=11%  Similarity=0.085  Sum_probs=114.7

Q ss_pred             CCCCCeEEEeccCCCCcccCCCchhhHHHHHHHHHHhhhhheeeccccccccccccCchhHHHHHHHHHhhcCC------
Q 004781            6 GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP------   79 (731)
Q Consensus         6 ~~~~~~lVmDvEGTDgrERGED~q~FErksALFALA~SdVlIINmW~~dIGr~qgaN~~LLKTVFEvnL~LF~~------   79 (731)
                      |.+..+++||.||++|++||++  .++.+.++||+++|+++|+|+|.|..+........+++...++.++...+      
T Consensus        82 ~~~~~~~~lDteG~~~~~~~~~--~~~~~i~~l~~llSs~~i~N~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T d1f5na2          82 KPGHILVLLDTEGLGDVEKGDN--QNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEV  159 (277)
T ss_dssp             STTCEEEEEEECCBCCGGGCCC--TTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC-------C
T ss_pred             CCCceEEEEecccccccccccc--hhHHHHHHHHHHHhCEEEEeccccCcHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            3456799999999999999887  47999999999999999999999988765444334444433333332211      


Q ss_pred             --------CceEEEEEeeCCC-CCChhchhHHHHHHHHHHhhhCCCCCCCC------CCCCcceE-EEEEeecCCcccc-
Q 004781           80 --------RKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKPQAHM------ETPLSEFF-NVEVVALSSFEEK-  142 (731)
Q Consensus        80 --------~Kt~LLFVIRD~~-~tple~L~~~l~~dl~~IW~~v~KP~~~~------~~~l~DfF-d~~f~~LpHk~lq-  142 (731)
                              ....++|||||+. ....+.-..+..++|+++|.....+....      ...|..|| |+..++|||-... 
T Consensus       160 ~~~~~~~~~~p~l~~vvRD~~~~~~~~~~~~t~~eyLe~~l~~~~~~~~~~~~~N~~R~~i~~~F~dv~cf~Lp~P~~~~  239 (277)
T d1f5na2         160 EDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRR  239 (277)
T ss_dssp             CGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHHHTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCSCGG
T ss_pred             ccchhhcccCCceEEEeecccccccccCCcccHHHHHHHHHhcccCchhhhHhhhhHHHHHHHhcCCCeEEeCCCCcchh
Confidence                    1357999999994 44555555577899999998876665322      23488889 7999999983211 


Q ss_pred             -------------HHHHHHHHHHHHHhcccCCCCC
Q 004781          143 -------------EELFKEQVASLRQRFYHSVAPG  164 (731)
Q Consensus       143 -------------~e~F~~~v~~Lr~rF~~~~~~~  164 (731)
                                   .++|.++|..||+++..+..|.
T Consensus       240 ~l~~l~~~~~~~L~~~F~~~v~~L~k~I~~~~~~K  274 (277)
T d1f5na2         240 KLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTK  274 (277)
T ss_dssp             GGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhchhhcCCccccCHHHHHHHHHHHHHHhccCCCc
Confidence                         2479999999999988766553

PyMOL of d1f5na2