Citrus Sinensis ID: 004785

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730
Protein Sequence
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Secondary Structure (PSIPRED)
cccEEEcccccccEEEEcccccccccccccccEEEEEccccccccEEccccccccEEEEcccccEEEEEEccEEEccccccEEEEEccccEEEccccccccccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEccccccccEEEEEccccccEEEEccccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccEEEEEEccccccEEEEcccccEEccccccEEEcccccccccccEEEcccccEEEEEcccccccEEccccccEEEEEccccEEEccccccccccEEEEcccccccEEEEEEEcccccEEEEEccccccccccccccccEEEEEcccccccccEEEccccEEEcccccccEEEccccccccEEEccEEcEEEEEEccEEEEEEccccccccccccccccccEEccccccccEEcccccccccccEEccccccEEEcccccccEEEEccccccccccEEEccccEEEEEEEcccccccccEEEEEcccccccccccccccccEEEEcccEEEccccEEEcccccEEEEEEEccccEEEccccccccccccccccccccccccccccEEEEEEEEEEEcccccccHHHHHHHHHccccccEEEEEccccEEEEEcccccccEEEEEEEccccccEEEEEcccEEEEEEEccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccccccccccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEccccccccccEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEHcHHHHHccccccEEEEEEcccccEEEEcccccEEEEEEccccccccccEEEEcccccEEEEcccccccEEcccccccccccccccEEcccccccccccccccccccEEEEEEccccEEEEEEEcccccEEEEcccccccEEEEcccccccEEEcccccccccccccccccccccccccccEEccccccccccEccccccHEHccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHcEEEEccEEEEHHcccccccccHEEHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHccEEEEEEccHEHEEEccccccccEEEEEcccccccEEEccccccEEEEEEccccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mrrsiwaddanapsgsssqsrfppqaasnhrnsRLRNVFGLLaqrevaprtkhssKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAeslhhlrpkycplsppprstiaaafspdgktlasthgdhtvkiidcqtgsclkvlhghrrtpwvvrfhplnptiiasgslDHEVRLWnastaecigsrdfyrpiASIAFHASGELLAVASGHKLYIWRYnmreetssprivlrtrrslravhfhphaapllltaevndldssessltlatspgywrypppvicmagahssshpglaeevplitppflrpsfvrdderislqhtehdsgatrtqqslrssssvrlltystpsgqyelvlspiasnrsspmpdgtgtdsfVSEIdgalpqaaigavgtldglpeertnylpsfgdqtnwelpflqgwfvgqsqaaqcttgllngsdhenlaasgqienvlnssatpisvgqsrasgrsgsghqsthsqmmytpgsaegtafiniphsesarqpvTRFQAEVATSVAAAAATelpctvklriwphdiadpcallkgescrltiPHAVLcsemgahfspcGRYLVACVACvqpyletdpgfqsqgyqdatgagtsptrhpisaHQVIYELRIYSleeatfgtvlTSRAIRAAHCLTSIQVYRVSDMELvrvlpsaedevnvacfhpsvggglvygtkegklRILQfdgsygmnhttscfmhenmqlvpaqalec
Flexible Loop (DISEMBL)
mrrsiwaddanapsgsssqsrfppqaasnhrnsRLRNVFGllaqrevaprtkhsskrllgetarkcsgsfsQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYnmreetssprivLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQhtehdsgatrtqqslrssssVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Low Complexity Region (SEG)
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGAtrtqqslrssssvrlltystPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPIsvgqsrasgrsgsghqsTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQaevatsvaaaaateLPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Disordered region (IsUnstruct)
*************************************VFGLL****************************SQIFEAGRDARRGLASWVEAESLHHLRPKYC*********************ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND*******LTLATSPGYWRYPPPVICMAGA***********VPLITPPFL**************************************************************************IDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLN************************************************************************RFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGF*******************ISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQ*********
Disordered Region (DISOPRED)
*RRSIW*DDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISV*****************SQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAG**P**HPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGM******FMHENMQLVPAQALEC
Disordered Region (DISEMBL)
******************************RNSRLRNVFGLLAQREV************GETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN*********TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT*******************RLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATP**********************MMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQ**********RHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Disordered Region (DISPRO)
*****************SQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDH*NLAAS*QIENVLNSSATPISV*****************************************RQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLE***********************PISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPVTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	730	2.2.26 [Sep-21-2011]
Q9C0C7	1298	Activating molecule in BE	yes	no	0.210	0.118	0.425	1e-25
A2AH22	1300	Activating molecule in BE	no	no	0.210	0.118	0.425	1e-25
Q8YTC2	1258	Uncharacterized WD repeat	yes	no	0.180	0.104	0.382	7e-16
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.135	0.064	0.419	6e-13
Q00808	1356	Vegetative incompatibilit	no	no	0.147	0.079	0.351	7e-12
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.141	0.061	0.386	7e-11
P93107	606	Flagellar WD repeat-conta	N/A	no	0.139	0.168	0.380	1e-10
Q9USN3	777	Probable U3 small nucleol	yes	no	0.105	0.099	0.410	3e-10
Q5M786	334	WD repeat-containing prot	no	no	0.132	0.290	0.343	3e-10
Q498M4	334	WD repeat-containing prot	no	no	0.142	0.311	0.345	3e-10

>sp|Q9C0C7|AMRA1_HUMAN Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 8/162 (4%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct: 45  KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
           P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct: 105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query: 219 YNMREETSSPRIVLRTRRSL---RAVHFHPHAAPLLLTAEVN 257
           ++ RE    P  V++T   +   R V F P     LLTA VN
Sbjct: 165 WSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAIVN 201

Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation.
Homo sapiens (taxid: 9606)

>sp|A2AH22|AMRA1_MOUSE Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 91/162 (56%), Gaps = 8/162 (4%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
           K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct: 45  KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query: 159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
           P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct: 105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query: 219 YNMREETSSPRIVLRTRRSL---RAVHFHPHAAPLLLTAEVN 257
           ++ RE    P  V++T   +   R V F P     LLTA VN
Sbjct: 165 WSRRE----PFAVVKTASEMERVRLVRFDP-LGHYLLTAIVN 201

Regulates autophagy and development of the nervous system. Involved in autophagy in controlling protein turnover during neuronal development, and in regulating normal cell survival and proliferation.

Mus musculus (taxid: 10090)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 9/141 (6%)

Query: 89  EAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E   L  +R   C   L+       + AF PDG+TLAS  GD T+K+ D Q G+CL+ L 
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLT 765

Query: 147 GHRRTPWV--VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASG 203
           GH  T WV  V F P   T +AS + DH ++LW+ S  +C+ + +     + S+AF A G
Sbjct: 766 GH--TDWVRCVAFSPDGNT-LASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADG 822

Query: 204 ELLAVASGHK-LYIWRYNMRE 223
           + LA  SG + + IW Y+  E
Sbjct: 823 QTLASGSGDRTIKIWNYHTGE 843

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 6/105 (5%)

Query: 112  AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHPLNPTIIASGS 169
            A AFSPDG TLAS  GD TV++ D  +  CL +L GH  T WV  V F+P + + +ASGS
Sbjct: 1163 AVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGH--TSWVNSVVFNP-DGSTLASGS 1219

Query: 170  LDHEVRLWNASTAECIGSRDFYRP-IASIAFHASGELLAVASGHK 213
             D  VRLW  ++++C+ +   +   + S+ F+  G +LA  S  K
Sbjct: 1220 SDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDK 1264

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 73.2 bits (178), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 3/111 (2%)

Query: 109  STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
            S ++ AFSPDG+ +AS  GD T+KI D  +G+C + L GH  + W V F P +   +ASG
Sbjct: 969  SVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSP-DGQRVASG 1027

Query: 169  SLDHEVRLWNASTAECIGSRDFYRP-IASIAFHASGELLAVAS-GHKLYIW 217
            S D  +++W+ ++  C  + + +   + S+ F   G+ +A  S  H + IW
Sbjct: 1028 SDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIW 1078

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 69.7 bits (169), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 3/106 (2%)

Query: 115  FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
            FSPDGK LAS   DH++K+ D  +G  L  L GH      VRF P   T IA+GS D  V
Sbjct: 1163 FSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT-IAAGSEDKTV 1221

Query: 175  RLWNASTAECIGSRDFYRP-IASIAFHASGELLAVASGHK-LYIWR 218
            +LW+    + + + + ++  + S++F   G+ LA AS  K + +WR
Sbjct: 1222 KLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P93107|PF20_CHLRE Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas reinhardtii GN=PF20 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           F P G  LAS  GD  VKI D +   C+     H++  W VRFH L   ++ASGSLDH V
Sbjct: 376 FHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHLGE-VVASGSLDHTV 434

Query: 175 RLWNASTAEC-IGSRDFYRPIASIAFHASGELLAVASGHK-LYIW 217
           RLW+    +C +  R     +  +A+      LA AS  K + +W
Sbjct: 435 RLWDLPAGKCRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVW 479

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9USN3|UTP13_SCHPO Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp13 PE=3 SV=3

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS 167
           R   A   S DG+ +AS   D T+K+ D  TG  + VL GHRR  W   F+P +   +AS
Sbjct: 466 RDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQ-LAS 524

Query: 168 GSLDHEVRLWNASTAECI 185
           GS D  +R+WN  T +C+
Sbjct: 525 GSGDRTIRIWNVDTQQCV 542

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 151

Query: 173 EVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVAS 210
            VR+W+  T +C+ +   +  P++++ F+  G L+  +S
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Xenopus tropicalis (taxid: 8364)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 93  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 151

Query: 173 EVRLWNASTAECIGSRDFY-RPIASIAFHASGELLAVASGHKL-YIW 217
            VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	730
296088263	773	unnamed protein product [Vitis vinifera]	0.995	0.940	0.667	0.0
359494728	802	PREDICTED: uncharacterized protein LOC10	0.946	0.861	0.682	0.0
449458880	775	PREDICTED: uncharacterized protein LOC10	0.964	0.908	0.624	0.0
255554314	690	nucleotide binding protein, putative [Ri	0.897	0.949	0.641	0.0
359480074	809	PREDICTED: uncharacterized protein LOC10	0.932	0.841	0.554	0.0
224132280	784	predicted protein [Populus trichocarpa]	0.931	0.867	0.551	0.0
224065515	703	predicted protein [Populus trichocarpa]	0.867	0.900	0.574	0.0
297744244	756	unnamed protein product [Vitis vinifera]	0.850	0.821	0.574	0.0
255585908	806	nucleotide binding protein, putative [Ri	0.919	0.832	0.547	0.0
356505084	809	PREDICTED: uncharacterized protein LOC10	0.923	0.833	0.525	0.0

>gi|296088263|emb|CBI35771.3| unnamed protein product [Vitis vinifera]

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/776 (66%), Positives = 585/776 (75%), Gaps = 49/776 (6%)

Query: 1   MRRSIWADDANAPSGSSS--QSRFPPQAASNHRNSRLR--NVFGLLAQREVAPRTKHSSK 56
           MR S W DD +    S+S  Q+R P    S+H NSR    NV+ LLA+REVAPRTKHS K
Sbjct: 1   MRSSFWVDDGSVNVTSTSSSQTRIPQAVPSHHPNSRHSGSNVYRLLARREVAPRTKHSLK 60

Query: 57  RLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFS 116
           RL G+ ++    S     EA R+AR GL SWVEAESL HL  KYCPL PPPRSTIAAAFS
Sbjct: 61  RLWGDASKWHHNSIGPRCEAARNARCGLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFS 120

Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PDGKTLASTHGDHTVKIIDCQ GSCLKVL GHRRTPWVVRFHPL P I+ASGSLDHEVRL
Sbjct: 121 PDGKTLASTHGDHTVKIIDCQNGSCLKVLSGHRRTPWVVRFHPLYPEILASGSLDHEVRL 180

Query: 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236
           W+ASTAECIGSRDFYRPIASIAFHA GELLAVASGHKLYIW YN R ETSSP IVL+TRR
Sbjct: 181 WDASTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYIWHYNRRGETSSPTIVLKTRR 240

Query: 237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLA 296
           SLRAVHFHPHAAP LLTAEVNDLDSS+SS+TLATSPGY RYPPP + +A AHSS    LA
Sbjct: 241 SLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTLATSPGYLRYPPPTVYLADAHSSDRSSLA 300

Query: 297 EEVPLITPP-FLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYE 355
           +E+PL++ P F+ PSF RDD RISLQHT+  +G +  QQ +  S+SVRLLTYSTPSGQYE
Sbjct: 301 DELPLMSLPFFIWPSFARDDGRISLQHTDGVAGPSIAQQRVDHSTSVRLLTYSTPSGQYE 360

Query: 356 LVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQT 415
           L+LSP+  + SSPMP+ TGT+SF+ E++ ++PQ A+ A+ T +  PEER+N    FGD +
Sbjct: 361 LLLSPMEPSSSSPMPEETGTNSFLREMENSVPQPAMDAMDTTEVQPEERSNQFFPFGDPS 420

Query: 416 NWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIEN--VLNSSATPISVGQSRAS 473
            WELPFLQGW +GQSQA Q T   L+GS HEN ++ G+ E    + SS    S+ QSR +
Sbjct: 421 YWELPFLQGWLIGQSQAGQRTIRPLSGSGHENPSSFGETETPAPMVSSVMSTSISQSRVT 480

Query: 474 GRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQP-VTRFQAEVATSVAAAAATELP 532
           GRS S  +   S+     GSAEG AF+NI   ES  QP V+R Q+E+ATS+AAAAA ELP
Sbjct: 481 GRSSS--RHRSSRSRAATGSAEG-AFLNIGQDESGLQPVVSRIQSELATSLAAAAAAELP 537

Query: 533 CTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLE 592
           CTVKLRIWPHDI DPCA L  E CRLTIPHAVLCSEMGAHFSPCGR+L ACVAC+ P+LE
Sbjct: 538 CTVKLRIWPHDIKDPCASLDAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHLE 597

Query: 593 TDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLT 652
            DPG Q Q +   TGA TSPTRHPISAHQV+YELRIYSLEEATFG VL SRAIRAAHCLT
Sbjct: 598 ADPGSQGQMHHGVTGAATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLT 657

Query: 653 SIQ--------------------------------------VYRVSDMELVRVLPSAEDE 674
           SIQ                                      VYRVSDMELVRVLPSAEDE
Sbjct: 658 SIQFSPTSEHLLLAYGRRHNSLLKSIVIDGETTVPIYTILEVYRVSDMELVRVLPSAEDE 717

Query: 675 VNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHENMQLVPAQALEC 730
           VNVACFHPSVGGGLVYGTKEGKLRILQ+D S+GMN+T+SCF+ ENM  VP  ALEC
Sbjct: 718 VNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNYTSSCFLDENMLEVPTYALEC 773

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494728|ref|XP_002282542.2| PREDICTED: uncharacterized protein LOC100263178 [Vitis vinifera]

 Score =  936 bits (2419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/736 (68%), Positives = 565/736 (76%), Gaps = 45/736 (6%)

Query: 37  NVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHL 96
           NV+ LLA+REVAPRTKHS KRL G+ ++    S     EA R+AR GL SWVEAESL HL
Sbjct: 70  NVYRLLARREVAPRTKHSLKRLWGDASKWHHNSIGPRCEAARNARCGLISWVEAESLRHL 129

Query: 97  RPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156
             KYCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ GSCLKVL GHRRTPWVVR
Sbjct: 130 SAKYCPLLPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQNGSCLKVLSGHRRTPWVVR 189

Query: 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
           FHPL P I+ASGSLDHEVRLW+ASTAECIGSRDFYRPIASIAFHA GELLAVASGHKLYI
Sbjct: 190 FHPLYPEILASGSLDHEVRLWDASTAECIGSRDFYRPIASIAFHAQGELLAVASGHKLYI 249

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR 276
           W YN R ETSSP IVL+TRRSLRAVHFHPHAAP LLTAEVNDLDSS+SS+TLATSPGY R
Sbjct: 250 WHYNRRGETSSPTIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMTLATSPGYLR 309

Query: 277 YPPPVICMAGAHSSSHPGLAEEVPLITPP-FLRPSFVRDDERISLQHTEHDSGATRTQQS 335
           YPPP + +A AHSS    LA+E+PL++ P F+ PSF RDD RISLQHT+  +G +  QQ 
Sbjct: 310 YPPPTVYLADAHSSDRSSLADELPLMSLPFFIWPSFARDDGRISLQHTDGVAGPSIAQQR 369

Query: 336 LRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVG 395
           +  S+SVRLLTYSTPSGQYEL+LSP+  + SSPMP+ TGT+SF+ E++ ++PQ A+ A+ 
Sbjct: 370 VDHSTSVRLLTYSTPSGQYELLLSPMEPSSSSPMPEETGTNSFLREMENSVPQPAMDAMD 429

Query: 396 TLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIE 455
           T +  PEER+N    FGD + WELPFLQGW +GQSQA Q T   L+GS HEN ++ G+ E
Sbjct: 430 TTEVQPEERSNQFFPFGDPSYWELPFLQGWLIGQSQAGQRTIRPLSGSGHENPSSFGETE 489

Query: 456 N--VLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQP-V 512
               + SS    S+ QSR +GRS S  +   S+     GSAEG AF+NI   ES  QP V
Sbjct: 490 TPAPMVSSVMSTSISQSRVTGRSSS--RHRSSRSRAATGSAEG-AFLNIGQDESGLQPVV 546

Query: 513 TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAH 572
           +R Q+E+ATS+AAAAA ELPCTVKLRIWPHDI DPCA L  E CRLTIPHAVLCSEMGAH
Sbjct: 547 SRIQSELATSLAAAAAAELPCTVKLRIWPHDIKDPCASLDAERCRLTIPHAVLCSEMGAH 606

Query: 573 FSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLE 632
           FSPCGR+L ACVAC+ P+LE DPG Q Q +   TGA TSPTRHPISAHQV+YELRIYSLE
Sbjct: 607 FSPCGRFLAACVACMLPHLEADPGSQGQMHHGVTGAATSPTRHPISAHQVMYELRIYSLE 666

Query: 633 EATFGTVLTSRAIRAAHCLTSIQ------------------------------------- 655
           EATFG VL SRAIRAAHCLTSIQ                                     
Sbjct: 667 EATFGLVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHNSLLKSIVIDGETTVPIYTIL 726

Query: 656 -VYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSC 714
            VYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQ+D S+GMN+T+SC
Sbjct: 727 EVYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNYTSSC 786

Query: 715 FMHENMQLVPAQALEC 730
           F+ ENM  VP  ALEC
Sbjct: 787 FLDENMLEVPTYALEC 802

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458880|ref|XP_004147174.1| PREDICTED: uncharacterized protein LOC101210946 [Cucumis sativus] gi|449509118|ref|XP_004163498.1| PREDICTED: uncharacterized protein LOC101228862 [Cucumis sativus]

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/751 (62%), Positives = 541/751 (72%), Gaps = 47/751 (6%)

Query: 23  PPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARR 82
           PP     +R  R+ NVF LLAQREV+P+TK +S+R  G++  +   S     EA RDA+R
Sbjct: 29  PPLPYPTNRQ-RVSNVFQLLAQREVSPQTKRASRRFWGDSHDRQCDSVGPRCEAARDAKR 87

Query: 83  GLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL 142
           GL SWVEAESL HL  KYCPL PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDCQTG+CL
Sbjct: 88  GLISWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGTCL 147

Query: 143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHAS 202
           KVL GHRRTPWVVRFHPL P I+ASGSLD++VRLW+A+TAECIGSRDFYRPIASIAFHA 
Sbjct: 148 KVLSGHRRTPWVVRFHPLYPEILASGSLDYDVRLWDANTAECIGSRDFYRPIASIAFHAQ 207

Query: 203 GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS 262
           GELLAVASGHKLYIW YN R ET SP IVLRTRRSLRAVHFHPHAA  LLTAEVNDLD+S
Sbjct: 208 GELLAVASGHKLYIWHYNKRGETPSPTIVLRTRRSLRAVHFHPHAAQFLLTAEVNDLDTS 267

Query: 263 ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQ 321
           ES++TLATSPGY +YPPP +  A AHSS    L + +PL++ P L  PSF +++ R+S+Q
Sbjct: 268 ESAITLATSPGYVQYPPPTVYFADAHSSDRSSLMDGLPLMSFPLLIWPSFSKENRRMSMQ 327

Query: 322 HTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSE 381
            TE D GA R Q+ +  S+SVRLLTYSTPSGQYELVLSPI  N SSP+P+ TGT+ + SE
Sbjct: 328 RTEGDPGAGRLQR-VDPSASVRLLTYSTPSGQYELVLSPIEPNSSSPVPEETGTNHYSSE 386

Query: 382 IDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLN 441
           ++  + + A  A   ++   E R N    F D   WELPFLQGW +GQSQA+Q      +
Sbjct: 387 METEVSETAGDASENMEVQTEVRNNQNFPFNDP--WELPFLQGWLIGQSQASQHALRPHS 444

Query: 442 GSDHENLAASGQIENVLN--SSATPISVGQSRASGRSGSGHQSTHSQM-MYTPGSAEGTA 498
               EN +A   I  +    +S  P S  QSR   RS S H+S  S++ +   GS EG +
Sbjct: 445 DDVRENSSAPSDIGGIHAPLTSLIPTSASQSRVGRRSSSRHRSMRSRVPVPVSGSDEGGS 504

Query: 499 FINIPHSESARQP-VTRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCR 557
             N    ES  QP V+R Q+E+A S+AA AA ELPCTVKLRIW HD+ +PCA L  E CR
Sbjct: 505 MSNTIPDESDPQPIVSRIQSELAASLAAVAAAELPCTVKLRIWSHDVKNPCAPLDDERCR 564

Query: 558 LTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPI 617
           L IPHAVLCSEMGAHFSPCGR+L ACVAC+ P++E DPGFQS    DATGA TSPTRHPI
Sbjct: 565 LIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHMEADPGFQSHANSDATGAATSPTRHPI 624

Query: 618 SAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQ---------------------- 655
           SA QV+YELRIYSLEEATFG VL SRAIRAAHCLTSIQ                      
Sbjct: 625 SAQQVMYELRIYSLEEATFGVVLASRAIRAAHCLTSIQFSPTSEHLLLAYGRRHSSLLKS 684

Query: 656 ----------------VYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRI 699
                           VYRVS+MELVRVLPSAEDEVNVACFHPSVGGG+VYGTKEGKLRI
Sbjct: 685 VVVDGETTVPIYTILEVYRVSNMELVRVLPSAEDEVNVACFHPSVGGGVVYGTKEGKLRI 744

Query: 700 LQFDGSYGMNHTTSCFMHENMQLVPAQALEC 730
           LQ+D S  +NH+T  F+ ENM  VP  ALEC
Sbjct: 745 LQYDSSQAINHSTYGFLDENMLEVPTYALEC 775

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554314|ref|XP_002518197.1| nucleotide binding protein, putative [Ricinus communis] gi|223542793|gb|EEF44330.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/667 (64%), Positives = 498/667 (74%), Gaps = 12/667 (1%)

Query: 1   MRRSIWADDANAPSGSSSQSRFPPQAASNHR-NSRLRNVFGLLAQREVAPRTKHSSKRLL 59
           MR S WADDAN PS S+S    PP ++  H  N +++NV+GLLAQREV PR KH+SK+L 
Sbjct: 1   MRGSFWADDANTPSTSNSN---PPISSRRHSGNYKIKNVYGLLAQREVCPRAKHASKKLW 57

Query: 60  GETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDG 119
            ++  +         ++ +DARRGL SWVEAESL HL  KYCPL PPPRSTIAAAFS DG
Sbjct: 58  KDSTDQRLDP-----QSAKDARRGLISWVEAESLQHLSAKYCPLLPPPRSTIAAAFSSDG 112

Query: 120 KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179
           KTLASTHGDHTVKIIDCQTG CLKVL GHRRTPWVVRFHPL P I+ASGSLDHEVRLWNA
Sbjct: 113 KTLASTHGDHTVKIIDCQTGKCLKVLSGHRRTPWVVRFHPLCPEILASGSLDHEVRLWNA 172

Query: 180 STAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLR 239
            T ECIGS +FYRPIASIAFHA GELLAVASGHKLYIW+YN R ETSSP  VLRTRRSLR
Sbjct: 173 KTTECIGSHEFYRPIASIAFHAHGELLAVASGHKLYIWQYNKRGETSSPPHVLRTRRSLR 232

Query: 240 AVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEV 299
           AVHFHPH APLLLTAEVNDLDSSESS+TLATSPGY  YPPP + +A  HS     L +E+
Sbjct: 233 AVHFHPHGAPLLLTAEVNDLDSSESSMTLATSPGYLCYPPPTVYLADTHSGGGLRLGDEL 292

Query: 300 PLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLS 359
           PL++ PFL  SF R   RI +Q  + D G++R QQ L   +SVRLLTYSTPSGQYEL+LS
Sbjct: 293 PLMSLPFLI-SFARGG-RIPVQQIDRDVGSSRGQQRLDHPTSVRLLTYSTPSGQYELLLS 350

Query: 360 PIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWEL 419
           PI  N SSP+P+ T  DSF+ ++D   PQ  +    T +    ER N++  FGDQ +WE+
Sbjct: 351 PIEPNSSSPVPEETRPDSFMGDMDNETPQFVMDTAETAEVQSVERNNHISPFGDQLHWEV 410

Query: 420 PFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQIENVLNSSATPISVGQSRASGRSGSG 479
           PFL GW VGQSQA + T+   NG  +ENL A G+IEN ++S   P ++GQSR SGRSG  
Sbjct: 411 PFLHGWLVGQSQAGRRTSASPNGLANENLTAYGEIENRVSSPVIPPNIGQSRGSGRSGPR 470

Query: 480 HQSTHSQMMYTPGSAEGTAFINIPHSESARQPV-TRFQAEVATSVAAAAATELPCTVKLR 538
           ++S+  Q +   GS E TA   + H+E+   P  +R ++E+ATS+AAAAA ELPCTVKLR
Sbjct: 471 YRSSQPQTIPVTGSGESTASGYMVHNENDALPASSRIRSELATSLAAAAAAELPCTVKLR 530

Query: 539 IWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQ 598
           IWP++I DP   L  E CRLTIPHAVLCSEMGAHFSPCGR+L AC+ACV P+LE DPG Q
Sbjct: 531 IWPYNIKDPFTPLDTERCRLTIPHAVLCSEMGAHFSPCGRFLAACIACVLPHLEADPGLQ 590

Query: 599 SQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQVYR 658
            Q      GA TSPTRHPISAHQV+YELRIYSLEE TFG VL SRAIRAAHCLTSIQ   
Sbjct: 591 GQVLHHNAGAATSPTRHPISAHQVMYELRIYSLEETTFGLVLASRAIRAAHCLTSIQFSP 650

Query: 659 VSDMELV 665
            S+  L+
Sbjct: 651 TSEHLLL 657

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480074|ref|XP_002268829.2| PREDICTED: uncharacterized protein LOC100246400 [Vitis vinifera]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/784 (55%), Positives = 518/784 (66%), Gaps = 103/784 (13%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF-SQIFEAGRDARRGLASWVEAESLH 94
           RNV  LLAQRE+ PR+K   KRL G ++ + + SF     EA RDARRGL SWVEA+SL 
Sbjct: 11  RNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSLQ 70

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  +YCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC TGSCLKVL GHRRTPWV
Sbjct: 71  HLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPWV 130

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHP++P I+ASGSLDHEVR+W+A+TAECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 131 VRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHKL 190

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           ++W Y+ R ETSSP I+L+TRRSLRAVHFHPH AP+LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 191 FVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPGY 250

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQ 333
             YPPP + +A  HSS    LA E+ L + PF   PSF RDD RI L HT+  +G+TR Q
Sbjct: 251 LHYPPPAVFLANIHSSDRLKLASELHLASLPFSFIPSFARDDSRIDLYHTDRPTGSTRVQ 310

Query: 334 QSLRSSSSVRLLTYSTPSGQYELVL-----SPIASNRSSPMPDGTGTDSFVSEIDGALPQ 388
             + SS SV+    +  +GQY+ ++     SP+  + S+P  +GT  +   + ++  +P 
Sbjct: 311 --MGSSGSVQFQADANAAGQYDYMVFPMETSPVLPSCSNPSTEGTQINCVPNGMENGIPD 368

Query: 389 AAIGAVGTLDGLPEERT--------------------------------------NYLPS 410
             + A+ + +  P E+                                        +LP 
Sbjct: 369 PKMDAMDSTEMQPVEQNQHRSSANLDTFSGANSASRGVPGHISSLPESIEFGHLHQFLPC 428

Query: 411 FGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHE----NLA----------ASGQIEN 456
            G +  WELPFLQGW +GQSQA       LNG+ HE    NL           ++  IE 
Sbjct: 429 RGPKY-WELPFLQGWLMGQSQAGVSPMLSLNGASHEHSSQNLGMGSAILNPDLSTSNIEV 487

Query: 457 VLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV-TRF 515
            + S A   S+     +GRSG   + + S ++    S E  A INI H  S   P+ +R 
Sbjct: 488 PVISPAMAGSINLPGVAGRSGQQQRFSRSHLISVSESVEQAASINIAHEGSDTPPIMSRI 547

Query: 516 QAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSP 575
           Q+E+A S+AAAAA ELPCTVKLRIW HD+ +P A+L  E C L IPHAVLCSEMGAH SP
Sbjct: 548 QSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAHLSP 607

Query: 576 CGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEAT 635
           CGR+L ACVACV P+LE DPG Q+Q  QDA GA TSPTRHP+SAH V+YELRIYSLEEAT
Sbjct: 608 CGRFLAACVACVLPHLEADPGLQTQ-VQDAIGASTSPTRHPVSAHHVMYELRIYSLEEAT 666

Query: 636 FGTVLTSRAIRAAHCLTSIQ--------------------------------------VY 657
           FGTVL SRAIRAAHCLTSIQ                                      VY
Sbjct: 667 FGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSLVIDGETTLPIYTILEVY 726

Query: 658 RVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMN-HTTSCFM 716
           RVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+D S+GMN +  + F+
Sbjct: 727 RVSDMELVRVLPSAEDEVNVACFHPLPGGGLVYGTKEGKLRVLQYDVSHGMNSNGPNSFL 786

Query: 717 HENM 720
            EN+
Sbjct: 787 GENL 790

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132280|ref|XP_002321300.1| predicted protein [Populus trichocarpa] gi|222862073|gb|EEE99615.1| predicted protein [Populus trichocarpa]

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/791 (55%), Positives = 513/791 (64%), Gaps = 111/791 (14%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFS-QIFEAGRDARRGLASWVEAESLH 94
           RN   LL QRE+ PRTKH+ KR  GE ++    S S    E  RDA+RGL SW EAESL 
Sbjct: 1   RNALCLLVQREICPRTKHTPKRRWGEASQWNYNSSSVPKTEPARDAKRGLISWAEAESLR 60

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTH------GDHTVKIIDCQTGSCLKVLHGH 148
           HL  +YCPL PPPRSTIAAAFSPDGKTLAST       GDHTVKIIDCQTG CLKVL GH
Sbjct: 61  HLSAQYCPLVPPPRSTIAAAFSPDGKTLASTQQVLLLCGDHTVKIIDCQTGICLKVLMGH 120

Query: 149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV 208
           RRTPWVVRFHPL+P I+ASGSLDHEVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLAV
Sbjct: 121 RRTPWVVRFHPLHPEILASGSLDHEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAV 180

Query: 209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTL 268
           ASGHKLYIW YN R E SSP IVL+TRRSLRAVHFHPH AP LLTAEVNDLDSS+SS+T 
Sbjct: 181 ASGHKLYIWHYNKRGEASSPTIVLKTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTR 240

Query: 269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDS 327
           ATSPGY RYPPP + +    S     LA E+PL++ PFL  PSF  DD RI     + + 
Sbjct: 241 ATSPGYLRYPPPAVFVTNGQSGDCVSLASELPLVSLPFLFVPSFSLDDSRI-----DANR 295

Query: 328 GATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPM-----PDGTGTDSFVSEI 382
             T +   + SS+S++L   +  + +Y  ++SP+ +  + P       +G   +SF S +
Sbjct: 296 LVTSSTMQVESSTSMQLQMDTNATDRYVPLVSPMETFPAVPSSSYTSAEGIVNNSFPSGM 355

Query: 383 DGALPQAAIGAVGT--------------------------LDGLP------EERTNY--- 407
            G +      A+ T                          +DG+P      ++ T++   
Sbjct: 356 GGGVSNTREDAMETDEMPPVGGNPQGKSAHLEMLGVGNSAMDGVPANTSIRQQSTDFGQL 415

Query: 408 ---LPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA------------ASG 452
              LPS  D T WELPFLQGW +GQSQA   +T  L+    E  A            ++ 
Sbjct: 416 QQILPS-RDSTWWELPFLQGWLMGQSQAGGPSTVPLSSGSRERSAQYIGPSSLTSYLSTQ 474

Query: 453 QIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV 512
            +E  + S A P S   S  SGRSGS  + + S+  + P S E  A IN+ H  S  QP+
Sbjct: 475 NVEAAVASLAMPGSTSISGVSGRSGSRPRISRSRF-FVPESRESMAPINMRHEGSDNQPI 533

Query: 513 -TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGA 571
             R Q+E+ATS+ AAAA ELPCTVKLR+W HDI  PCA L  + CRLTIPHAVLCSEMGA
Sbjct: 534 FNRIQSEIATSLEAAAAAELPCTVKLRVWSHDIKHPCAPLNADKCRLTIPHAVLCSEMGA 593

Query: 572 HFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSL 631
           HFSPCGRYL ACVAC+ P++E DPG Q+  +QDA GA TSPTRHPISAHQV+YELRIYSL
Sbjct: 594 HFSPCGRYLAACVACMLPHMEADPGLQTLVHQDA-GAATSPTRHPISAHQVVYELRIYSL 652

Query: 632 EEATFGTVLTSRAIRAAHCLTSIQ------------------------------------ 655
           EEATFG+VL SRAIRAAHCLTSIQ                                    
Sbjct: 653 EEATFGSVLVSRAIRAAHCLTSIQFSPMSEHILLAYGRRHGSLLKSIVIDGETTTPIYTV 712

Query: 656 --VYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTT- 712
             VYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+L++DG +G+N T  
Sbjct: 713 LEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGVHGVNCTRP 772

Query: 713 SCFMHENMQLV 723
           + F  EN+  V
Sbjct: 773 NHFPEENLTEV 783

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065515|ref|XP_002301835.1| predicted protein [Populus trichocarpa] gi|222843561|gb|EEE81108.1| predicted protein [Populus trichocarpa]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/736 (57%), Positives = 486/736 (66%), Gaps = 103/736 (13%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQ-IFEAGRDARRGLASWVEAESLH 94
           RN F LL QRE+ PRTKH+ KR  GE A   S S S    E  RDA+RGL SWVEAESL 
Sbjct: 2   RNAFCLLVQREICPRTKHTPKRRWGEDAHWNSNSSSSPKTEQARDAKRGLISWVEAESLR 61

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  KYCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG+CLKVL GHRRTPWV
Sbjct: 62  HLSAKYCPLVPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGNCLKVLMGHRRTPWV 121

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHPL+P I+ASGSLD+EVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 122 VRFHPLHPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLAVASGHKL 181

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           YIW YN R E SSP IVLRTRRSLRAVHFHPH AP LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 182 YIWHYNKRGEASSPTIVLRTRRSLRAVHFHPHGAPFLLTAEVNDLDSSDSSMTRATSPGY 241

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR-------PSFVRDDERISLQHTEHDS 327
            RYPPP + +A   S+    LA E+PL++            PS + +    S+ ++  D+
Sbjct: 242 PRYPPPAVFVANGQSNDRVSLASELPLVSYTSAEGIVSNAFPSGMGN----SVSNSREDA 297

Query: 328 GATRTQQSLRSS---SSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDG 384
             T   QS+  +   +SV L T+                        G G     S  DG
Sbjct: 298 METDEMQSVGGNPQGNSVNLETF------------------------GVGN----SATDG 329

Query: 385 ALPQAAIGAVGTLDGLPEERTNYLPSFGDQTNWELP-FLQGWFVGQSQAAQCTTGLLNGS 443
                ++    T  G   +   +LPS  D T WELP FLQGW +GQSQA   +T   N  
Sbjct: 330 VPAHTSVRQQSTDFG---QLQQFLPS-RDSTRWELPPFLQGWLMGQSQAGVPSTLPHNSG 385

Query: 444 DHE------------NLAASGQIENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTP 491
            HE            +  ++  +E  + S A P S   S  SGRSGS H+ + S+    P
Sbjct: 386 GHELSAQYFGPSSLASYLSTQNVEAAVASLAMPGSTSLSGVSGRSGSRHRVSRSRFS-VP 444

Query: 492 GSAEGTAFINIPHSESARQPV-TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCAL 550
            S E  A IN+ H  +  QP+  R Q+E+ATS+AAAA  ELPCTVKLR+W HDI  PCA 
Sbjct: 445 ESGESVAPINMQHEGTDNQPLFNRIQSEIATSLAAAA--ELPCTVKLRVWSHDIEHPCAP 502

Query: 551 LKGESCRLTIPHAVLCSEMGAHFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGT 610
           L  + C LTIPHAVLCSEMGAHFSPCGRYL ACVAC+ P++E DPG Q+  +QD TG  T
Sbjct: 503 LNSDKCCLTIPHAVLCSEMGAHFSPCGRYLAACVACMLPHMEADPGLQTLVHQD-TGTAT 561

Query: 611 SPTRHPISAHQVIYELRIYSLEEATFGTVLTSRAIRAAHCLTSIQ--------------- 655
           SPTRHPISAHQV+YELRIYSLEEATFG+VL SRAIRAAHCLTSIQ               
Sbjct: 562 SPTRHPISAHQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRR 621

Query: 656 -----------------------VYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGT 692
                                  VYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGT
Sbjct: 622 HVSLLKSIVIDGETKSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGT 681

Query: 693 KEGKLRILQFDGSYGM 708
           KEGKLR+L++DG++G+
Sbjct: 682 KEGKLRVLKYDGAHGV 697

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744244|emb|CBI37214.3| unnamed protein product [Vitis vinifera]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/727 (57%), Positives = 484/727 (66%), Gaps = 106/727 (14%)

Query: 36  RNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSF-SQIFEAGRDARRGLASWVEAESLH 94
           RNV  LLAQRE+ PR+K   KRL G ++ + + SF     EA RDARRGL SWVEA+SL 
Sbjct: 29  RNVLQLLAQREICPRSKQFPKRLWGGSSEQNAESFFGPKSEAARDARRGLISWVEADSLQ 88

Query: 95  HLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV 154
           HL  +YCPL PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC TGSCLKVL GHRRTPWV
Sbjct: 89  HLSARYCPLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCHTGSCLKVLTGHRRTPWV 148

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKL 214
           VRFHP++P I+ASGSLDHEVR+W+A+TAECIGSRDFYRPIASIAFHA GELLAVASGHKL
Sbjct: 149 VRFHPVHPEILASGSLDHEVRIWDANTAECIGSRDFYRPIASIAFHAKGELLAVASGHKL 208

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY 274
           ++W Y+ R ETSSP I+L+TRRSLRAVHFHPH AP+LLTAEVNDLDSS+SS+T ATSPGY
Sbjct: 209 FVWHYSRRGETSSPTIILKTRRSLRAVHFHPHGAPVLLTAEVNDLDSSDSSMTRATSPGY 268

Query: 275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRTQ 333
             YPPP + +A  HSS    LA E+ L + PF   PSF RDD RI L HT+  +G+TR Q
Sbjct: 269 LHYPPPAVFLANIHSSDRLKLASELHLASLPFSFIPSFARDDSRIDLYHTDRPTGSTRVQ 328

Query: 334 QSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGA 393
                                   +    S+RSS        D+F      + P+     
Sbjct: 329 ------------------------MGSSGSHRSS-----ANLDTFSGANSASRPKY---- 355

Query: 394 VGTLDGLPEERTNYLPSFGDQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLAASGQ 453
                                  WELPFLQGW +GQSQA       LNG+ HE+ +    
Sbjct: 356 -----------------------WELPFLQGWLMGQSQAGVSPMLSLNGASHEHSS---- 388

Query: 454 IENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV- 512
            +N+    A   S+     +GRSG   + + S ++    S E  A INI H  S   P+ 
Sbjct: 389 -QNL--GMAMAGSINLPGVAGRSGQQQRFSRSHLISVSESVEQAASINIAHEGSDTPPIM 445

Query: 513 TRFQAEVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAH 572
           +R Q+E+A S+AAAAA ELPCTVKLRIW HD+ +P A+L  E C L IPHAVLCSEMGAH
Sbjct: 446 SRIQSELAASLAAAAAAELPCTVKLRIWSHDLKNPSAVLNAEKCLLIIPHAVLCSEMGAH 505

Query: 573 FSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLE 632
            SPCGR+L ACVACV P+LE DPG Q+Q  QDA GA TSPTRHP+SAH V+YELRIYSLE
Sbjct: 506 LSPCGRFLAACVACVLPHLEADPGLQTQ-VQDAIGASTSPTRHPVSAHHVMYELRIYSLE 564

Query: 633 EATFGTVLTSRAIRAAHCLTSIQ------------------------------------- 655
           EATFGTVL SRAIRAAHCLTSIQ                                     
Sbjct: 565 EATFGTVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSLVIDGETTLPIYTIL 624

Query: 656 -VYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMN-HTTS 713
            VYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+D S+GMN +  +
Sbjct: 625 EVYRVSDMELVRVLPSAEDEVNVACFHPLPGGGLVYGTKEGKLRVLQYDVSHGMNSNGPN 684

Query: 714 CFMHENM 720
            F+ EN+
Sbjct: 685 SFLGENL 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585908|ref|XP_002533627.1| nucleotide binding protein, putative [Ricinus communis] gi|223526485|gb|EEF28756.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/786 (54%), Positives = 501/786 (63%), Gaps = 115/786 (14%)

Query: 37  NVFGLLAQREVAPRTKHSSKRLLGETAR-KCSG--------SFSQIFEAGRDARRGLASW 87
           N   LL +RE+ P+TKH  KR  G+ +R K +G        S +   E  RDA+RGL SW
Sbjct: 27  NALCLLVRREICPKTKHVPKRRWGDASRWKSNGGDNNNAISSSAPKCEPARDAKRGLISW 86

Query: 88  VEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG 147
           VE ESL HL  KYCPL PPPRSTIAAAFSPDG+TLASTHGDHTVKIIDCQTG+CLKVL G
Sbjct: 87  VEEESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG 146

Query: 148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA 207
           HRRTPWVVRFHPL+P I+ASGSLD+EVRLW+A+T+ECIGSRDFYRPIASIAFHA GELLA
Sbjct: 147 HRRTPWVVRFHPLHPEILASGSLDYEVRLWDANTSECIGSRDFYRPIASIAFHAEGELLA 206

Query: 208 VASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLT 267
           VASGHKLY+W YN R E SSP IVL+TRRSLRAVHFHPHAAP LLTAEVNDLDSS+SS+T
Sbjct: 207 VASGHKLYVWHYNKRGEASSPAIVLKTRRSLRAVHFHPHAAPFLLTAEVNDLDSSDSSMT 266

Query: 268 LATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHD 326
            ATSPGY RYPPP + +A   SS    LA EVPL++ PFL  PSF  +D R      + +
Sbjct: 267 RATSPGYLRYPPPAVFVANVQSSDRVSLAAEVPLMSLPFLFMPSFSVNDTR-----PDAN 321

Query: 327 SGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIAS--------------NRSSPMPDG 372
             A+ +     SS S RL        +Y+ +LSP+ +              + +S +P G
Sbjct: 322 RHASSSIMHGGSSGSRRLQAEVNAGEKYDRLLSPMETFPAVASSSHPGTEGSLNSLLPTG 381

Query: 373 TGT--DSFVS--EIDGALPQAAI---------------GAVGTLDGLPEERTNYLPSFG- 412
           + +  D+ V   E D   P   I                A+G + G    R   +  FG 
Sbjct: 382 SASVSDTIVDAMETDEMQPIRGILQGNYRDPETSRGGNSAMGGMSGNMSVRPRSI-EFGQ 440

Query: 413 --------DQTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA-----------ASGQ 453
                   D T WEL FLQGW +GQSQA   +T  LN   HE  A           +S  
Sbjct: 441 LHQLLPSRDPTWWELHFLQGWLMGQSQAGVPSTLPLNVGSHEYPAQYTASSSTSYLSSHN 500

Query: 454 IENVLNSSATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGTAFINIPHSESARQPV- 512
           +E  + + A P S   S  SGR    H  +   +     S E    I   H  +  QP+ 
Sbjct: 501 MEAAMATLAMPASTSLSGVSGRFDLQHNVSRFHI-----SGESMPPIIRQHDSTDTQPLF 555

Query: 513 TRFQAEVATSVAAAAAT-ELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGA 571
            R Q+E+ATS+AAAAA  ELPCTVKLR+WPHDI  PCA L  E CRLTIPHAVLCSEMGA
Sbjct: 556 NRIQSEIATSLAAAAAAAELPCTVKLRVWPHDIKHPCAPLNAEKCRLTIPHAVLCSEMGA 615

Query: 572 HFSPCGRYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSL 631
           HFSPCGR+L ACVAC+ P +E DPG Q+   QD +GA TSPTRHPISAHQV+YELRIYSL
Sbjct: 616 HFSPCGRFLAACVACMLPNMEADPGLQTLVQQD-SGAATSPTRHPISAHQVMYELRIYSL 674

Query: 632 EEATFGTVLTSRAIRAAHCLTSIQ------------------------------------ 655
           EEATFG+VL SRAIRAAHCLTSIQ                                    
Sbjct: 675 EEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIIIDGETTSPVYTV 734

Query: 656 --VYRVSDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTS 713
             VYRVSDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+L++DG++G N TT 
Sbjct: 735 LEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLKYDGAHGGNCTTP 794

Query: 714 CFMHEN 719
            +  E+
Sbjct: 795 NYCPED 800

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505084|ref|XP_003521322.1| PREDICTED: uncharacterized protein LOC100794246 [Glycine max]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/779 (52%), Positives = 501/779 (64%), Gaps = 105/779 (13%)

Query: 38  VFGLLAQREVAPRTKHSSKRLLGE---TARKCSGSFSQ-IFEAGRDARRGLASWVEAESL 93
           VF LLA+RE++PR+++ +KR  GE    ++  S  +S    E  RDARRGL SWVEAESL
Sbjct: 30  VFNLLARREISPRSRYVAKRHWGEPGEASKSKSSPYSHPKNEVVRDARRGLLSWVEAESL 89

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
            HL  KYCPL PPPRSTIAAAFSPDGK LASTHGDHTVKIIDC+TGSCLKVL GHRRTPW
Sbjct: 90  RHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPW 149

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK 213
           VVRFHPL+P I+ASGSLD EVRLW+A+T+ECI S  FYRPIASIAFHA GE++AVASGHK
Sbjct: 150 VVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHK 209

Query: 214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPG 273
           LYIW +N + E SSP  VL+T+RSLRAVHFHPHAAP LLTAEVNDL+SS+SS+T ATS G
Sbjct: 210 LYIWFHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLESSDSSMTEATSLG 269

Query: 274 YWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF-LRPSFVRDDERISLQHTEHDSGATRT 332
           Y +YPPP + +   H + H  L+ E+P ++ PF + P++  D+ R  LQH  HD G+   
Sbjct: 270 YLQYPPPAVFVTNIHPTEHISLSSELPYVSLPFYVMPAYTVDESRAELQHASHDVGSGSM 329

Query: 333 QQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTD-----SFVSEIDGALP 387
           Q  + S++ V+L    + +  YE  +SP+ +    P    TG +     +F + +   L 
Sbjct: 330 Q--IESAAMVQLHADPSAAAHYETTVSPMDTFSEMPSSSQTGAEYPAHTAFSNGMGIGLS 387

Query: 388 QAAIGAV-----------------------GTLDGLPEERTN--YLPSFG---------D 413
              +  +                       G L GL  +  N   L  FG         D
Sbjct: 388 NLTMDGMETDETRPAEGSQHGNLTNTYSLNGMLHGLSRQTANRGVLSEFGQFHQFFPSRD 447

Query: 414 QTNWELPFLQGWFVGQSQAAQCTTGLLNGSDHENLA-------------ASGQIENVLNS 460
            + WE+PFL GW +GQSQ    +     G+  +NL+             ++  ++  + S
Sbjct: 448 PSGWEIPFLHGWIMGQSQVGVPSMLPHMGASRDNLSQHIGSSSIKASNPSTSNVDAAMPS 507

Query: 461 SATPISVGQSRASGRSGSGHQSTHSQMMYTPGSAEGT--AFINIPHSESARQP-VTRFQA 517
           SA P S+    +S RSG  +  + S++   P S  G   A IN PH     Q  V+R Q+
Sbjct: 508 SAIPGSISIPGSSMRSGLRNHFSQSRV---PVSESGNLAASINAPHDGFDIQTIVSRIQS 564

Query: 518 EVATSVAAAAATELPCTVKLRIWPHDIADPCALLKGESCRLTIPHAVLCSEMGAHFSPCG 577
           E+ATSVAA AA ELPCTVKLR+W HDI +PCA L  + CRLTIPHAVLCSEMGAHFSPCG
Sbjct: 565 ELATSVAATAA-ELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCG 623

Query: 578 RYLVACVACVQPYLETDPGFQSQGYQDATGAGTSPTRHPISAHQVIYELRIYSLEEATFG 637
           R+L ACVACV P++E DPG Q+  +QD  G  TSPTRHPISAHQV+YELRIYSLEEATFG
Sbjct: 624 RFLAACVACVLPHIEADPGLQTPVHQDP-GVATSPTRHPISAHQVMYELRIYSLEEATFG 682

Query: 638 TVLTSRAIRAAHCLTSIQ--------------------------------------VYRV 659
           +VL SRAIRAAHCLTSIQ                                      VY+V
Sbjct: 683 SVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYKV 742

Query: 660 SDMELVRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQFDGSYGMNHTTSCFMHE 718
           SDMELVRVLPSAEDEVNVACFHP  GGGLVYGTKEGKLR+LQ+DG++ +N T   +  E
Sbjct: 743 SDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGTGPSYFPE 801

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	730
TAIR|locus:2020285	793	AT1G04140 "AT1G04140" [Arabido	0.552	0.508	0.523	1.5e-162
UNIPROTKB|E1BQ96	1301	AMBRA1 "Uncharacterized protei	0.224	0.126	0.409	2.6e-24
UNIPROTKB|Q9C0C7	1298	AMBRA1 "Activating molecule in	0.272	0.153	0.370	5.2e-23
MGI|MGI:2443564	1300	Ambra1 "autophagy/beclin 1 reg	0.272	0.153	0.370	5.2e-23
UNIPROTKB|F1SI99	1297	F1SI99 "Uncharacterized protei	0.215	0.121	0.421	6.7e-23
UNIPROTKB|F1MPW0	1297	F1MPW0 "Uncharacterized protei	0.215	0.121	0.421	6.9e-23
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.141	0.307	0.339	5.9e-10
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.141	0.334	0.349	9.6e-10
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.141	0.308	0.349	1.3e-09
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.141	0.308	0.349	1.3e-09

TAIR|locus:2020285 AT1G04140 "AT1G04140" [Arabidopsis thaliana (taxid:3702)]

 Score = 1014 (362.0 bits), Expect = 1.5e-162, Sum P(2) = 1.5e-162
 Identities = 215/411 (52%), Positives = 257/411 (62%)

Query:     1 MRRSIWADDANAPSGSSSQSRFPPQAASNHRNSRLRNVFGLLAQREVAPRTKHSSKRLLG 60
             M  SIW +D ++P  S   S  P   A+ HR  R R+VF LL QRE++P TK   ++  G
Sbjct:     1 MTESIWLNDQSSPR-SMIPSAKP--VANVHRQ-RCRSVFKLLVQREISPNTKFVPRKRWG 56

Query:    61 ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGK 120
             E+      S     E  R+    L SWVEAESL HL  KYCPL PPPRSTIAAAFS DG+
Sbjct:    57 ESRCDADSSCGTTSEPVREQGLNLISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGR 116

Query:   121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS 180
             TLASTHGDHTVKIIDC+TG CLK+L GHRRTPWVVRFHP +  I+ASGSLDHEVRLWNA 
Sbjct:   117 TLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAK 176

Query:   181 TAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRA 240
             T ECI + DFYRPIASIAFHA GELLAVASGHKL+IW YN   + S+P IVL+TRRSLRA
Sbjct:   177 TGECIRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRA 236

Query:   241 VHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVP 300
             VHFHPH  PLLLTAEV D+DSS+S++T +TSPGY RYPPP I      S S   LA E+P
Sbjct:   237 VHFHPHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELP 296

Query:   301 LITPPFLR-PSFVRDDERISLQHTEHDSGAXXXXXXXXXXXXXXXXXXXXPSGQYELVLS 359
             L+  P+L  PS+  DD RI                               PS    +  S
Sbjct:   297 LVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSVEHGSRTISPS-PLPMATS 355

Query:   360 PIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLDGLPEERTNYLPS 410
                S  S  +PD + +++F ++        A+ A+   +  P  R N +PS
Sbjct:   356 ADLSG-SYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVGR-NRVPS 404

GO:0000166 "nucleotide binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

UNIPROTKB|E1BQ96 AMBRA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
 Identities = 68/166 (40%), Positives = 93/166 (56%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   +ASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KKVELPDSPRSTFLLAFSPDRTLMASTHVNHNIYITEVKTGKCVHSLVGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P  P +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct:   105 PTIPGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSES 264
             ++ RE  +  +      R +R V F P     LLTA VN  +  +S
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVNPSNQQQS 208

GO:0005737 "cytoplasm" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

UNIPROTKB|Q9C0C7 AMBRA1 "Activating molecule in BECN1-regulated autophagy protein 1" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
 Identities = 79/213 (37%), Positives = 110/213 (51%)

Query:    46 EVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS 104
             +V P  K++ + L G E   +  G+   + E   D  R    W++ E       K   L 
Sbjct:     2 KVVPE-KNAVRILWGRERGARAMGAQRLLQELVEDKTR----WMKWEG------KRVELP 50

Query:   105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
               PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FHP    +
Sbjct:    51 DSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGL 110

Query:   165 IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224
             IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W ++ RE 
Sbjct:   111 IASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWDWSRREP 170

Query:   225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
              +  +      R +R V F P     LLTA VN
Sbjct:   171 FAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2443564 Ambra1 "autophagy/beclin 1 regulator 1" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
 Identities = 79/213 (37%), Positives = 110/213 (51%)

Query:    46 EVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS 104
             +V P  K++ + L G E   +  G+   + E   D  R    W++ E       K   L 
Sbjct:     2 KVVPE-KNAVRILWGRERGTRAMGAQRLLQELVEDKTR----WMKWEG------KRVELP 50

Query:   105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
               PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FHP    +
Sbjct:    51 DSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFHPTISGL 110

Query:   165 IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREE 224
             IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W ++ RE 
Sbjct:   111 IASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWDWSRREP 170

Query:   225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
              +  +      R +R V F P     LLTA VN
Sbjct:   171 FAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISA

GO:0006914 "autophagy" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

UNIPROTKB|F1SI99 F1SI99 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 6.7e-23, Sum P(2) = 6.7e-23
 Identities = 67/159 (42%), Positives = 89/159 (55%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+ ++++ W 
Sbjct:   105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
             ++ RE  +  +      R +R V F P     LLTA VN
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1MPW0 F1MPW0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 67/159 (42%), Positives = 88/159 (55%)

Query:    99 KYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFH 158
             K   L   PRST   AFSPD   LASTH +H + I + +TG C+  L GHRRTPW V FH
Sbjct:    45 KRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYITEVKTGKCVHSLIGHRRTPWCVTFH 104

Query:   159 PLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
             P    +IASG LD EVR+W+          D    IAS+AFH + +LL +A+  +++ W 
Sbjct:   105 PTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATASEIHFWD 164

Query:   219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN 257
             ++ RE  +  +      R +R V F P     LLTA VN
Sbjct:   165 WSRREPFAVVKTASEMER-VRLVRFDP-LGHYLLTAIVN 201

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 162 (62.1 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D K + S   D T+KI D ++G  +K L GH+   + V F+P +  +I SGS D  
Sbjct:    95 AWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQS-NLIVSGSFDEN 153

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIW 217
             VR+W+ +T EC      +  P+  + F+  G L+   S    + IW
Sbjct:   154 VRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIW 199

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 9.6e-10, P = 9.6e-10
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 126

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 152

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query:   114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
             A+S D   L S   D T+KI D  +G CLK L GH    +   F+P +  +I SGS D  
Sbjct:    94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDES 152

Query:   174 VRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKLY-IW 217
             VR+W+  T +C+ +   +  P++++ F+  G L+  +S   L  IW
Sbjct:   153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020392001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (835 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	730
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-06
smart00320	40	smart00320, WD40, WD40 repeats	5e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG+ L+S+  D T+K+ D +TG CL  L GH      V F P + T +AS S D  
Sbjct: 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGT 158

Query: 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV 231
           ++LW+  T +C+ +       + S+AF   GE L  +S    + +W  +  +   + R  
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218

Query: 232 LRTRRSLRAVHFHPH 246
                 + +V F P 
Sbjct: 219 ---ENGVNSVAFSPD 230

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 14/211 (6%)

Query: 66  CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST 125
            S   + I  A       +  W  +     +R     L     S  + AFSPDGK LAS 
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT----LEGHSESVTSLAFSPDGKLLASG 173

Query: 126 HG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184
              D T+K+ D +TG  L  L GH      + F P    +IASGS D  +RLW+ ST + 
Sbjct: 174 SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 185 IGSRDFYRPIASI-AFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVH 242
           + S       + + +F   G LLA  S    + +W  ++R  +S  R +     S+ +V 
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLW--DLRSSSSLLRTLSGHSSSVLSVA 291

Query: 243 FHPHAAPLLL-----TAEVNDLDSSESSLTL 268
           F P    L       T  + DL++ +   +L
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 24/159 (15%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
           AFSPDG  +AS+  D T+K+ D +TG C+  L GH      V F P    +++S S D  
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGT 200

Query: 174 VRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV 231
           ++LW+ ST +C+G+ R     + S+AF   G LLA  S    + +W              
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD------------- 247

Query: 232 LRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLAT 270
           LRT   ++ +  H        T  V  L  S     LA+
Sbjct: 248 LRTGECVQTLSGH--------TNSVTSLAWSPDGKRLAS 278

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 8/137 (5%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
             AFSPDGK LA+  GD T+K+ D +TG  L+ L GH      V         +ASGS D
Sbjct: 14  CVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-LASGSSD 72

Query: 172 HEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR 229
             +RLW+  T EC+ +       ++S+AF   G +L+ +S  K + +W      ET    
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW----DVETGKCL 128

Query: 230 IVLRT-RRSLRAVHFHP 245
             LR     + +V F P
Sbjct: 129 TTLRGHTDWVNSVAFSP 145

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 9/112 (8%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           + AFSPDG+ L S+  D T+K+ D  TG CL  L GH      V F P +  ++ASGS D
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSED 240

Query: 172 HEVRLWNASTAECI----GSRDFYRPIASIAFHASGELLAVASG-HKLYIWR 218
             +R+W+  T EC+    G  +    + S+A+   G+ LA  S    + IW 
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTN---SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGS 169
           + AFSPDGK LAS   D TV++ D +TG  L  L   GH      + F P    +++ GS
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSP 228
            D  +RLW+  T + + + + +  + S++F   G +++  S    + +W  +     S  
Sbjct: 349 DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST---GSLL 405

Query: 229 RIVLRTRRSLRAVHFHP 245
           R +      + ++ F P
Sbjct: 406 RNLDGHTSRVTSLDFSP 422

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
           + ++ +FSPDG+ ++S   D TV++ D  TGS L+ L GH      + F P +   +ASG
Sbjct: 372 NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASG 430

Query: 169 SLDHEVRLWNAST 181
           S D+ +RLW+  T
Sbjct: 431 SSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPW--VVRFHPLNPTIIASGS- 169
           AFSPDG+ L S   D T+K+ D   G   +K L G   +    +    P   +I+ + S 
Sbjct: 72  AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131

Query: 170 LDHEVRLWNASTA-ECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS 227
           LD  V+LW+ ST  + I +       + S+AF   G+LLA  S     I  +++R     
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKP 190

Query: 228 PRIVLRTRRSLRAVHFHPHAAPLLLTA 254
              +      + ++ F P    L+ + 
Sbjct: 191 LSTLAGHTDPVSSLAFSPDGGLLIASG 217

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 13/119 (10%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASI 197
             + L GH      V F P    ++A+GS D  +++W+  T E +  R       P+  +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELL--RTLKGHTGPVRDV 57

Query: 198 AFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLLTA 254
           A  A G  LA  S    + +W     E        L    S + +V F P    +L ++
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVR----TLTGHTSYVSSVAFSPD-GRILSSS 111

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 138 TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
           +G  LK L GH      V F P +   +ASGS D  ++LW+
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
           G  L+ L GH      V F P +  ++ASGS D  VR+W+
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 122 LASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181
           +AS++ +  V++ D      +  +  H +  W + +   +PT++ASGS D  V+LW+ + 
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607

Query: 182 AECIGSRDFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREETSSPRIVLRT 234
              IG+      I  + F + SG  LA  S  HK+Y   Y++R    +P++ L T
Sbjct: 608 GVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYY--YDLR----NPKLPLCT 656

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	730
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.96
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.94
PTZ00421	493	coronin; Provisional	99.92
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.92
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.92
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.91
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.91
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.91
PTZ00420	568	coronin; Provisional	99.9
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.89
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.89
KOG0266	456	consensus WD40 repeat-containing protein [General	99.89
KOG0286	343	consensus G-protein beta subunit [General function	99.89
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.87
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.86
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.86
KOG0286	343	consensus G-protein beta subunit [General function	99.86
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.85
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.85
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0266	456	consensus WD40 repeat-containing protein [General	99.84
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.83
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.83
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.83
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.83
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.82
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.82
PTZ00421	493	coronin; Provisional	99.82
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.82
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.81
PLN00181	793	protein SPA1-RELATED; Provisional	99.81
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.8
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.8
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.8
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.79
KOG0645	312	consensus WD40 repeat protein [General function pr	99.79
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.79
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.79
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.79
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.79
PLN00181	793	protein SPA1-RELATED; Provisional	99.78
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.78
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.78
KOG0645	312	consensus WD40 repeat protein [General function pr	99.78
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.77
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.77
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.77
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.76
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.76
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.75
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.75
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.75
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.74
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.74
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.74
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.74
PTZ00420	568	coronin; Provisional	99.73
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.73
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.72
KOG0639	705	consensus Transducin-like enhancer of split protei	99.72
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.71
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.71
KOG0289	506	consensus mRNA splicing factor [General function p	99.71
KOG0296	399	consensus Angio-associated migratory cell protein	99.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.7
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.7
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.7
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.7
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.7
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.69
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.69
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.69
KOG0289	506	consensus mRNA splicing factor [General function p	99.68
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.68
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.68
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.68
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.68
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.68
KOG0643	327	consensus Translation initiation factor 3, subunit	99.67
KOG0267	825	consensus Microtubule severing protein katanin p80	99.67
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.67
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.66
KOG0643	327	consensus Translation initiation factor 3, subunit	99.66
KOG0646	476	consensus WD40 repeat protein [General function pr	99.66
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.66
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.66
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.66
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.65
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.65
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.65
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.65
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.65
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.64
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.64
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.64
KOG2096	420	consensus WD40 repeat protein [General function pr	99.64
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.64
KOG0267	825	consensus Microtubule severing protein katanin p80	99.63
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.63
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.62
KOG0296	399	consensus Angio-associated migratory cell protein	99.6
KOG2096	420	consensus WD40 repeat protein [General function pr	99.6
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.6
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.6
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.59
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.59
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.59
KOG1274	933	consensus WD40 repeat protein [General function pr	99.59
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.58
KOG0641	350	consensus WD40 repeat protein [General function pr	99.57
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.56
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.54
KOG1273	405	consensus WD40 repeat protein [General function pr	99.53
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.53
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.53
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.53
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.53
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.52
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.52
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.51
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.5
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.5
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.5
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.5
KOG1274	933	consensus WD40 repeat protein [General function pr	99.49
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.49
PRK03629	429	tolB translocation protein TolB; Provisional	99.48
KOG1539	910	consensus WD repeat protein [General function pred	99.47
PRK04922	433	tolB translocation protein TolB; Provisional	99.46
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.46
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.45
KOG4328	498	consensus WD40 protein [Function unknown]	99.45
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.45
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.45
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.45
KOG1539	910	consensus WD repeat protein [General function pred	99.44
PRK01742	429	tolB translocation protein TolB; Provisional	99.44
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.43
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.43
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.42
KOG2048	691	consensus WD40 repeat protein [General function pr	99.41
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.4
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.4
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.39
KOG0639	705	consensus Transducin-like enhancer of split protei	99.39
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.36
KOG2055	514	consensus WD40 repeat protein [General function pr	99.36
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.35
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.32
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.32
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.3
KOG1188	376	consensus WD40 repeat protein [General function pr	99.3
KOG1273	405	consensus WD40 repeat protein [General function pr	99.29
PRK11028	330	6-phosphogluconolactonase; Provisional	99.28
KOG0646	476	consensus WD40 repeat protein [General function pr	99.28
KOG2055	514	consensus WD40 repeat protein [General function pr	99.28
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.27
KOG0641	350	consensus WD40 repeat protein [General function pr	99.27
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.27
KOG1310	758	consensus WD40 repeat protein [General function pr	99.27
COG2319	466	FOG: WD40 repeat [General function prediction only	99.27
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.26
KOG4227	609	consensus WD40 repeat protein [General function pr	99.26
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.24
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.24
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.22
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.22
KOG4328	498	consensus WD40 protein [Function unknown]	99.21
KOG2139	445	consensus WD40 repeat protein [General function pr	99.2
KOG2048	691	consensus WD40 repeat protein [General function pr	99.2
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.2
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.2
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.19
PRK03629	429	tolB translocation protein TolB; Provisional	99.19
PRK01742	429	tolB translocation protein TolB; Provisional	99.19
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.18
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.18
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.18
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.18
PRK04922	433	tolB translocation protein TolB; Provisional	99.18
COG2319	466	FOG: WD40 repeat [General function prediction only	99.17
KOG0649	325	consensus WD40 repeat protein [General function pr	99.17
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.17
PRK05137	435	tolB translocation protein TolB; Provisional	99.16
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.15
KOG1188	376	consensus WD40 repeat protein [General function pr	99.14
PRK01029	428	tolB translocation protein TolB; Provisional	99.14
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.13
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.12
PRK04043	419	tolB translocation protein TolB; Provisional	99.11
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.1
KOG4227	609	consensus WD40 repeat protein [General function pr	99.1
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.09
PRK02889	427	tolB translocation protein TolB; Provisional	99.09
PRK11028	330	6-phosphogluconolactonase; Provisional	99.09
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.09
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.04
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.04
KOG2139	445	consensus WD40 repeat protein [General function pr	99.02
PRK01029	428	tolB translocation protein TolB; Provisional	99.02
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.99
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.99
PRK00178	430	tolB translocation protein TolB; Provisional	98.98
KOG1310	758	consensus WD40 repeat protein [General function pr	98.97
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.96
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.91
PRK04792	448	tolB translocation protein TolB; Provisional	98.91
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.85
KOG0649	325	consensus WD40 repeat protein [General function pr	98.85
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.85
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	98.84
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.81
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.81
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	98.77
KOG4547	541	consensus WD40 repeat-containing protein [General	98.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.77
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.76
KOG1963	792	consensus WD40 repeat protein [General function pr	98.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.74
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.73
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.71
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.68
KOG2321	703	consensus WD40 repeat protein [General function pr	98.66
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	98.63
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.63
KOG2321	703	consensus WD40 repeat protein [General function pr	98.62
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	98.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.57
PRK04043	419	tolB translocation protein TolB; Provisional	98.56
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.5
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.38
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.38
KOG2315	566	consensus Predicted translation initiation factor	98.38
KOG1963	792	consensus WD40 repeat protein [General function pr	98.35
COG4946	668	Uncharacterized protein related to the periplasmic	98.34
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.33
COG4946	668	Uncharacterized protein related to the periplasmic	98.31
KOG4547	541	consensus WD40 repeat-containing protein [General	98.27
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.2
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.18
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.14
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.13
KOG1334	559	consensus WD40 repeat protein [General function pr	98.1
KOG1334	559	consensus WD40 repeat protein [General function pr	98.09
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.07
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.02
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.01
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.01
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.99
KOG2315	566	consensus Predicted translation initiation factor	97.94
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.84
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	97.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.81
KOG2314	698	consensus Translation initiation factor 3, subunit	97.8
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.79
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.78
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.77
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.74
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.73
KOG2695	425	consensus WD40 repeat protein [General function pr	97.73
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.72
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.72
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.72
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.66
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.64
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.6
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.58
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.53
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.48
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.47
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.42
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.39
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.38
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.37
KOG2695	425	consensus WD40 repeat protein [General function pr	97.36
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.34
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.33
KOG1409	404	consensus Uncharacterized conserved protein, conta	97.33
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.31
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.27
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.24
KOG2314	698	consensus Translation initiation factor 3, subunit	97.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.2
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.17
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.15
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.14
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.11
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.1
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.05
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.01
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.97
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.93
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	96.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.86
PRK02888	635	nitrous-oxide reductase; Validated	96.84
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.81
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.73
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.6
PRK13616	591	lipoprotein LpqB; Provisional	96.59
KOG1912	1062	consensus WD40 repeat protein [General function pr	96.59
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.58
PRK10115	686	protease 2; Provisional	96.57
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.55
COG3391	381	Uncharacterized conserved protein [Function unknow	96.53
KOG3621	726	consensus WD40 repeat-containing protein [General	96.51
COG3391	381	Uncharacterized conserved protein [Function unknow	96.36
PRK02888	635	nitrous-oxide reductase; Validated	96.33
KOG3621	726	consensus WD40 repeat-containing protein [General	96.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.13
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.07
PF08953	65	DUF1899: Domain of unknown function (DUF1899); Int	95.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.99
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.94
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.84
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.8
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.74
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.66
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.63
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	95.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.49
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.48
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.37
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.14
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.07
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.06
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.83
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.64
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.5
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.46
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.38
KOG2395	644	consensus Protein involved in vacuole import and d	94.36
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.36
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.13
PRK13616	591	lipoprotein LpqB; Provisional	94.05
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.86
PRK10115	686	protease 2; Provisional	93.25
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.18
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.1
KOG2395	644	consensus Protein involved in vacuole import and d	93.09
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	92.99
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.9
KOG1008	783	consensus Uncharacterized conserved protein, conta	92.89
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.83
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	92.82
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	92.2
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	92.12
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.02
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.01
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	91.48
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.37
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	91.34
PRK13684	334	Ycf48-like protein; Provisional	91.25
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.03
KOG2444	238	consensus WD40 repeat protein [General function pr	91.02
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	89.96
PF13449	326	Phytase-like: Esterase-like activity of phytase	89.7
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	89.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.27
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.24
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	89.09
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	88.51
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	88.35
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.29
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.2
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.07
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.79
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	87.75
KOG2444	238	consensus WD40 repeat protein [General function pr	87.7
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	87.32
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.51
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	86.39
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	86.39
COG5167	776	VID27 Protein involved in vacuole import and degra	85.97
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.41
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.36
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	84.33
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	82.95
KOG2377	657	consensus Uncharacterized conserved protein [Funct	82.72
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	82.6
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.75
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	81.6
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.18
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.17

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.96  E-value=2e-28  Score=258.89  Aligned_cols=308  Identities=17%  Similarity=0.234  Sum_probs=243.3

Q ss_pred             CCCCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCCCC
Q 004785           29 NHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPR  108 (730)
Q Consensus        29 ~~rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~  108 (730)
                      -+|+||||++|++..++|.||+++++++..||..+.+.+..|.++...+..+|-.++  ..-.++...|..+..+.||++
T Consensus         5 ~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~V--iPl~k~Gr~d~~~P~v~GHt~   82 (472)
T KOG0303|consen    5 VVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLV--IPLVKTGRMDASYPLVCGHTA   82 (472)
T ss_pred             hhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceee--cccccccccCCCCCCccCccc
Confidence            378999999999999999999999999999999998888888666665543433333  334445555666778899999


Q ss_pred             CeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       109 ~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      .|..++|+| +...||+||+|.+|+||.+-.+       +++..|.+|...|.-|+|||.-.+.|++++.|.+|.+||+.
T Consensus        83 ~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~  162 (472)
T KOG0303|consen   83 PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG  162 (472)
T ss_pred             cccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence            999999999 7889999999999999998553       45778899999999999999888999999999999999999


Q ss_pred             CCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCC-CeEEEEEccCCCeEEEEEeeCC
Q 004785          181 TAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRR-SLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       181 tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~-~V~sVaFSPdG~~Llatgsvwd  258 (730)
                      +|+.+..+.|.+-|.++.|+-||.+|++.+.++ |+|||.++++.+.   ....|.+ .-..+.|-.+|. +++|+    
T Consensus       163 tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~---e~~~heG~k~~Raifl~~g~-i~tTG----  234 (472)
T KOG0303|consen  163 TGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS---EGVAHEGAKPARAIFLASGK-IFTTG----  234 (472)
T ss_pred             CCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee---ecccccCCCcceeEEeccCc-eeeec----
Confidence            999999999999999999999999999999555 9999999998765   2234433 334556777887 55543    


Q ss_pred             ccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCC
Q 004785          259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS  338 (730)
Q Consensus       259 l~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~s  338 (730)
                                     +.+.....+.+|+...-... +....-+.+..++.|-|.+|.+.|++                  
T Consensus       235 ---------------fsr~seRq~aLwdp~nl~eP-~~~~elDtSnGvl~PFyD~dt~ivYl------------------  280 (472)
T KOG0303|consen  235 ---------------FSRMSERQIALWDPNNLEEP-IALQELDTSNGVLLPFYDPDTSIVYL------------------  280 (472)
T ss_pred             ---------------cccccccceeccCcccccCc-ceeEEeccCCceEEeeecCCCCEEEE------------------
Confidence                           22233345666663322222 33334445556666777777766665                  


Q ss_pred             CcceeeecccCCCCCccceeccCCCCCCCCCCCCCCccccccccccCCchhhcccccccc
Q 004785          339 SSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGAVGTLD  398 (730)
Q Consensus       339 s~~~~l~~~~~~~~q~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (730)
                                  -++.+..|      +||+..++.++.||++.|.+..||++++.||..-
T Consensus       281 ------------~GKGD~~I------RYyEit~d~P~~hyln~f~S~epQRG~g~mPKRG  322 (472)
T KOG0303|consen  281 ------------CGKGDSSI------RYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRG  322 (472)
T ss_pred             ------------EecCCcce------EEEEecCCCceeEEecccccCCcccccccccccc
Confidence                        24555566      8999999999999999999999999999999765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.6e-26  Score=246.27  Aligned_cols=205  Identities=24%  Similarity=0.344  Sum_probs=173.0

Q ss_pred             cCCCCccceeeeccCcceeecCCCCeEEEE--------------EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004785           47 VAPRTKHSSKRLLGETARKCSGSFSQIFEA--------------GRDARRGLASWVEAESLHHLRPKYC----PLSPPPR  108 (730)
Q Consensus        47 is~~~~~~~k~~wd~~~~~~s~s~s~ll~a--------------~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~  108 (730)
                      ++.+....+...|+.....|+......+..              ..+.+..+++++.||++++|+..+.    .|.+|..
T Consensus       183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~  262 (459)
T KOG0272|consen  183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA  262 (459)
T ss_pred             eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh
Confidence            445556666666666666665322111111              1124679999999999999999874    6899999


Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l  188 (730)
                      .|..++|+|+|++|+|++.|.+-++||++++..+....||...|.+++|++ +|.+++||+.|..-+|||+++|+++..+
T Consensus       263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L  341 (459)
T KOG0272|consen  263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFL  341 (459)
T ss_pred             hheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEEEe
Confidence            999999999999999999999999999999999999999999999999999 9999999999999999999999999887


Q ss_pred             c-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          189 D-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       189 ~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      . |..+|.+|+|+|+|..||+|+. +.++|||++....+.   .+..|.+-|+.|.|+|+..+++++++
T Consensus       342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             cccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcc
Confidence            5 9999999999999999999995 559999999988744   78899999999999995555555554

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=5.7e-23  Score=233.81  Aligned_cols=271  Identities=18%  Similarity=0.192  Sum_probs=195.0

Q ss_pred             CCCcceecccccccccCCCCccceeeecc-CcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-------CC
Q 004785           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLG-ETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-------PL  103 (730)
Q Consensus        32 sSk~r~If~~~~krEis~~~~~~~k~~wd-~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L  103 (730)
                      .||||++|+...++|.+|.+++.....|+ .+...++..+.... +...++.          ..++..+.+       .+
T Consensus         3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~-w~~~gg~----------~v~~~~~~G~~~~~~~~l   71 (493)
T PTZ00421          3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVP-WQQLGST----------AVLKHTDYGKLASNPPIL   71 (493)
T ss_pred             cccccccccccCCcccceeccccccccCCCCCcEeECCceEEEE-EecCCce----------EEeeccccccCCCCCceE
Confidence            58999999999999999999999999998 55655664443332 2111221          122222222       36


Q ss_pred             CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEE
Q 004785          104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVR  175 (730)
Q Consensus       104 ~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVr  175 (730)
                      .+|.+.|++++|+| ++++|++|+.|++|++||+.++       +.+..+.+|...|.+++|+|.+.++|++++.|++|+
T Consensus        72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVr  151 (493)
T PTZ00421         72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVN  151 (493)
T ss_pred             eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEE
Confidence            78999999999999 8999999999999999999765       356788999999999999995568999999999999


Q ss_pred             EEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCC-eEEEEEccCCCeEEE
Q 004785          176 LWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRS-LRAVHFHPHAAPLLL  252 (730)
Q Consensus       176 LWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~-V~sVaFSPdG~~Lla  252 (730)
                      |||+.+++.+..+. |...|.+++|+|+|++|++++.+ .|+|||+++++...   .+..|... +..+.|.+++..+++
T Consensus       152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIIT  228 (493)
T ss_pred             EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEE
Confidence            99999998887765 88899999999999999999954 59999999887543   45566543 457789999887776


Q ss_pred             EEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccc
Q 004785          253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT  332 (730)
Q Consensus       253 tgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~  332 (730)
                      ++....                   ....+.+||....... +...........+.+.|++|++.+++....+   ....
T Consensus       229 ~G~s~s-------------------~Dr~VklWDlr~~~~p-~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD---g~Ir  285 (493)
T PTZ00421        229 LGCSKS-------------------QQRQIMLWDTRKMASP-YSTVDLDQSSALFIPFFDEDTNLLYIGSKGE---GNIR  285 (493)
T ss_pred             EecCCC-------------------CCCeEEEEeCCCCCCc-eeEeccCCCCceEEEEEcCCCCEEEEEEeCC---CeEE
Confidence            552100                   0124666665433221 1111111223445788999999888743211   1344


Q ss_pred             eeecCCC
Q 004785          333 QQSLRSS  339 (730)
Q Consensus       333 ~~~~~ss  339 (730)
                      .+++...
T Consensus       286 iwdl~~~  292 (493)
T PTZ00421        286 CFELMNE  292 (493)
T ss_pred             EEEeeCC
Confidence            5555443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=6.3e-25  Score=234.12  Aligned_cols=239  Identities=20%  Similarity=0.224  Sum_probs=194.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ...+.++..|++++-+|.+++|+...+    +|.+|...|.++.|+|.  +..||+|+.||+|++|++.+...+..|.+|
T Consensus       181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH  260 (459)
T KOG0272|consen  181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGH  260 (459)
T ss_pred             eEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcc
Confidence            334568899999999999999999876    58899999999999995  679999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~  226 (730)
                      ...|..++||| +|++|+|++.|.+-++||+.+++.+.. -+|...|.+++|+|||.++++|+-|. -+|||++++..+.
T Consensus       261 ~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im  339 (459)
T KOG0272|consen  261 LARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM  339 (459)
T ss_pred             hhhheeeeecC-CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEE
Confidence            99999999999 999999999999999999999876655 46999999999999999999999555 8999999999765


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc---CC------------CCeEEEec
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---YP------------PPVICMAG  286 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~p------------~~~V~l~d  286 (730)
                         .+.+|...|.+|.|+|+|-.++++++     +||++......++..+...+.   |.            ...+.+|.
T Consensus       340 ---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs  416 (459)
T KOG0272|consen  340 ---FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS  416 (459)
T ss_pred             ---EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeec
Confidence               78899999999999999998877554     888886666444333322211   11            12334444


Q ss_pred             CCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          287 AHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       287 ~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      ..+.   .......+....++++.+++|+..|+-
T Consensus       417 ~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t  447 (459)
T KOG0272|consen  417 TRTW---SPLKSLAGHEGKVISLDISPDSQAIAT  447 (459)
T ss_pred             CCCc---ccchhhcCCccceEEEEeccCCceEEE
Confidence            3322   233344456667888889999988875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.92  E-value=2.4e-24  Score=243.84  Aligned_cols=198  Identities=24%  Similarity=0.344  Sum_probs=174.2

Q ss_pred             ccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC
Q 004785           52 KHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG  127 (730)
Q Consensus        52 ~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~  127 (730)
                      ....+.+.++..-++..+|       ....+.|+++++|.+||+|.+.+.    .++||..+|.++.|+|.|-++||+|.
T Consensus       441 ~~~~~~L~GH~GPVyg~sF-------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~  513 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSF-------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH  513 (707)
T ss_pred             CceeEEeecCCCceeeeee-------cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC
Confidence            3334445556555555333       347889999999999999999876    47899999999999999999999999


Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEE
Q 004785          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELL  206 (730)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~L  206 (730)
                      |++.++|......+++.|.+|...|.|++||| +.+++++||.|.+|++||+.+|..++.+ +|.++|.+++|||+|++|
T Consensus       514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L  592 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL  592 (707)
T ss_pred             CceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE
Confidence            99999999999999999999999999999999 9999999999999999999999999986 599999999999999999


Q ss_pred             EEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcc
Q 004785          207 AVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (730)
Q Consensus       207 AsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~  260 (730)
                      ++|+.++ |.|||+..+..+.   .+.+|.+.|.++.||.||..|++++.     +||+.
T Consensus       593 aSg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  593 ASGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             eecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            9999655 9999999988655   67889999999999999997777665     55555

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.3e-23  Score=219.80  Aligned_cols=239  Identities=19%  Similarity=0.267  Sum_probs=191.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEECCCCeE
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGSC  141 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSP-----DG~~LaSgS~DgtVrVWDl~tg~~  141 (730)
                      .+.++-+.+++.|++|+.||+|++||.+++     .|.+|...|++++|-|     ..++||+++.||+|+|||+..+.+
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~  239 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC  239 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE
Confidence            455556678899999999999999999886     5889999999999976     677999999999999999999999


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEc-----------CCCC-----
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFH-----------ASGE-----  204 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafS-----------PdG~-----  204 (730)
                      +..+.+|+.+|+|+.|-  +..++++++.|++|++|+...|.+...+ +|...|+.++.+           |.|+     
T Consensus       240 ~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  240 VRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            99999999999999994  4789999999999999999999988776 488888888765           4444     


Q ss_pred             --------------------EEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004785          205 --------------------LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND  258 (730)
Q Consensus       205 --------------------~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwd  258 (730)
                                          .|++|+|+. +.+|+-...+.  ......+|..-|+.+.||||++++++++-     +|+
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk--pi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK--PITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWD  395 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc--chhhhhchhhheeeEEECCCccEEEEeecccceeeee
Confidence                                499999776 99999766553  33467899999999999999998776543     777


Q ss_pred             ccCCCcceeEeccCCcccC-----------------CCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          259 LDSSESSLTLATSPGYWRY-----------------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       259 l~s~~~~~~l~t~sG~~~~-----------------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      .++++....++   ||+..                 ....+.+|+..+   ..+..+.++..-.++.+.++|||.+++-
T Consensus       396 g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t---kKl~~DLpGh~DEVf~vDwspDG~rV~s  468 (480)
T KOG0271|consen  396 GRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT---KKLKQDLPGHADEVFAVDWSPDGQRVAS  468 (480)
T ss_pred             CCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeee---eeecccCCCCCceEEEEEecCCCceeec
Confidence            77666655444   44331                 123445555443   2445566666667888999999999985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.91  E-value=8.5e-23  Score=208.87  Aligned_cols=239  Identities=17%  Similarity=0.187  Sum_probs=188.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+...+.+++.|+++.+|++...         .+.||...|..+..++||++.++++.|+++++||+.+|+..+.|.+|.
T Consensus        26 ~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~  105 (315)
T KOG0279|consen   26 KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT  105 (315)
T ss_pred             CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC
Confidence            46788999999999999998642         588999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC--CCCeEEEEEcCC--CCEEEEEECCe-EEEEEcCCCcc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF--YRPIASIAFHAS--GELLAVASGHK-LYIWRYNMREE  224 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h--~~~V~sVafSPd--G~~LAsgSdd~-I~VWDl~t~~~  224 (730)
                      ..|.+++|++ +...+++|+.|++|++||+...........  .+.|.++.|+|+  ..+|++++.|+ |++||+++.+.
T Consensus       106 ~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l  184 (315)
T KOG0279|consen  106 KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL  184 (315)
T ss_pred             CceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence            9999999999 999999999999999999976544444333  789999999998  56888888555 99999999876


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC----------ccc--CCCCeEEEecC
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG----------YWR--YPPPVICMAGA  287 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG----------~~~--~p~~~V~l~d~  287 (730)
                      ..   .+.+|...++.+.+||||..++.+++     .||++.++....+....-          |.-  ...+.|.+|+.
T Consensus       185 ~~---~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl  261 (315)
T KOG0279|consen  185 RT---TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDL  261 (315)
T ss_pred             hh---ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEec
Confidence            44   78899999999999999995555444     899987777544432211          111  01355788887


Q ss_pred             CCCCCCCcc-cccCC-----CCCCceeeeEecCCCEEEEE
Q 004785          288 HSSSHPGLA-EEVPL-----ITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       288 ~s~d~~~L~-~~~~~-----~slpil~p~FSpDg~rI~~~  321 (730)
                      .+.....-. .+..+     ....+++.+||.||..+..+
T Consensus       262 ~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g  301 (315)
T KOG0279|consen  262 ESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG  301 (315)
T ss_pred             cchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence            765542211 11111     13446689999999998873

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.91  E-value=2.3e-23  Score=236.00  Aligned_cols=222  Identities=21%  Similarity=0.280  Sum_probs=186.0

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCC-----------------------------------CCCCCCCCCeEEEEE
Q 004785           71 SQIFEAGRDARRGLASWVEAESLHHLRPKY-----------------------------------CPLSPPPRSTIAAAF  115 (730)
Q Consensus        71 s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t-----------------------------------~~L~gH~~~Vt~laf  115 (730)
                      .......+++...|+.|..|..|++|.+..                                   .++.||.++|..+.|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            344455677888999999999999998762                                   026699999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCe
Q 004785          116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPI  194 (730)
Q Consensus       116 SPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V  194 (730)
                      +|+.++|+++|+|++||+|.+.+..++..++||..+|+.+.|+| .+.+|+|++.|++.++|......+.+.+ +|...|
T Consensus       460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV  538 (707)
T KOG0263|consen  460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDV  538 (707)
T ss_pred             cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhccccccc
Confidence            99999999999999999999999999999999999999999999 9999999999999999999988888876 589999


Q ss_pred             EEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCC
Q 004785          195 ASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPG  273 (730)
Q Consensus       195 ~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG  273 (730)
                      .|+.|||+..++++||.++ |++||+.++..++   .+.+|..+|.+|+|||+|++|++++...                
T Consensus       539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~----------------  599 (707)
T KOG0263|consen  539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDG----------------  599 (707)
T ss_pred             ceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCC----------------
Confidence            9999999999999999665 9999999998755   8899999999999999999888776521                


Q ss_pred             cccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          274 YWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       274 ~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                             .|.+||+..+.......+   .+.-+.+..||+||..++...
T Consensus       600 -------~I~iWDl~~~~~v~~l~~---Ht~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  600 -------LIKIWDLANGSLVKQLKG---HTGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             -------cEEEEEcCCCcchhhhhc---ccCceeEEEEecCCCEEEecC
Confidence                   344444444333222222   233445789999999999733

>PTZ00420 coronin; Provisional

Probab=99.90  E-value=1.2e-21  Score=225.13  Aligned_cols=211  Identities=16%  Similarity=0.201  Sum_probs=168.1

Q ss_pred             CCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCC
Q 004785           33 SRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPR  108 (730)
Q Consensus        33 Sk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~  108 (730)
                      ++|||+|+...+..  |.+++.....|+.....++..+....... .      .|+.++.|++|+....    .+.+|.+
T Consensus         5 ~~~~~~~~~~~~~~--y~diri~~~~~~s~~ia~n~~~~A~~w~~-~------gGG~~gvI~L~~~~r~~~v~~L~gH~~   75 (568)
T PTZ00420          5 PLIKNLYPDPSNNL--FDDLRICSRVIDSCGIACSSGFVAVPWEV-E------GGGLIGAIRLENQMRKPPVIKLKGHTS   75 (568)
T ss_pred             chhhhcCCchhhCe--eccEEccccccCceeEeeCCCeEEEEEEc-C------CCCceeEEEeeecCCCceEEEEcCCCC
Confidence            89999999966544  88899988889888877765553332221 1      2445778999987543    4789999


Q ss_pred             CeEEEEECCC-CCEEEEEeCCCeEEEEECCCCe--------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          109 STIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS--------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       109 ~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~--------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      .|.+++|+|+ +.+|++|+.|++|+|||+.++.        .+..+.+|...|.+++|+|++..++++++.|++|+|||+
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl  155 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI  155 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence            9999999996 7899999999999999997642        345678999999999999944456789999999999999


Q ss_pred             CCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEE-----EEEccCCCeEEEE
Q 004785          180 STAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRA-----VHFHPHAAPLLLT  253 (730)
Q Consensus       180 ~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~s-----VaFSPdG~~Llat  253 (730)
                      ++++.+..+.+...|.+++|+|+|++|++++ ++.|+|||+++++...   .+..|...+..     ..|++++.+++++
T Consensus       156 ~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlTt  232 (568)
T PTZ00420        156 ENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILST  232 (568)
T ss_pred             CCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence            9998877777788999999999999999988 4559999999987543   56677765433     3456888888877


Q ss_pred             Ee
Q 004785          254 AE  255 (730)
Q Consensus       254 gs  255 (730)
                      +.
T Consensus       233 G~  234 (568)
T PTZ00420        233 GF  234 (568)
T ss_pred             Ec
Confidence            63

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.8e-22  Score=210.68  Aligned_cols=169  Identities=18%  Similarity=0.283  Sum_probs=147.1

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EEEe
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVLH  146 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l~  146 (730)
                      .+.......+..|++|+.|.++|+||+.+.    +.++|..-|.|++|+|||+.||+|+.||+|++||.++|+++ +.|.
T Consensus       118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~  197 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALR  197 (480)
T ss_pred             EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccccc
Confidence            334444558899999999999999999886    47899999999999999999999999999999999998765 7899


Q ss_pred             cCCCCcEEEEEccC----CCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcC
Q 004785          147 GHRRTPWVVRFHPL----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYN  220 (730)
Q Consensus       147 gH~~~V~sVafSP~----dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~  220 (730)
                      +|+..|++++|.|.    ..+++++++.||+|+|||+..++++..+ +|..+|+|+.|--+| +|++|+.+ +|++|+..
T Consensus       198 gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~  276 (480)
T KOG0271|consen  198 GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRAL  276 (480)
T ss_pred             CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEcc
Confidence            99999999999873    3568999999999999999999988775 699999999996443 78899854 59999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEc
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFH  244 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFS  244 (730)
                      .+...+   .+.+|...|+.++.+
T Consensus       277 dG~~~r---~lkGHahwvN~lals  297 (480)
T KOG0271|consen  277 DGKLCR---ELKGHAHWVNHLALS  297 (480)
T ss_pred             chhHHH---hhcccchheeeeecc
Confidence            887644   788999999988877

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.89  E-value=4.8e-22  Score=203.37  Aligned_cols=188  Identities=20%  Similarity=0.231  Sum_probs=158.8

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRT  151 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~~~  151 (730)
                      ...++...++++.|+++++||+.++    +|.+|...|.+++|++|.+.|++|+.|.+|++||+........... |++.
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW  150 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence            3457889999999999999999875    5899999999999999999999999999999999875544333333 3789


Q ss_pred             cEEEEEccCC-CCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCC
Q 004785          152 PWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSP  228 (730)
Q Consensus       152 V~sVafSP~d-g~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~  228 (730)
                      |.|+.|+|.. .-+|++++.|++|++||+++-+.... .+|.+.++.+++||||.++++|+. +.+.+||++.++..   
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l---  227 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL---  227 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee---
Confidence            9999999943 66899999999999999998887766 469999999999999999999994 55999999998763   


Q ss_pred             eEEecCCCCeEEEEEccCCCeEEEEE----eeCCccCCCcceeE
Q 004785          229 RIVLRTRRSLRAVHFHPHAAPLLLTA----EVNDLDSSESSLTL  268 (730)
Q Consensus       229 ~~l~~h~~~V~sVaFSPdG~~Llatg----svwdl~s~~~~~~l  268 (730)
                       ...+|...|.+++|+|+.-.|++..    .+|++........+
T Consensus       228 -ysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  228 -YSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             -EeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence             4778999999999999987766543    39998876665433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=2.4e-21  Score=219.16  Aligned_cols=197  Identities=28%  Similarity=0.402  Sum_probs=166.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC------CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC-CCCeEEEEEec
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPK------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKVLHG  147 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~------t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~~l~g  147 (730)
                      ......+..+++++.++.+++|+..      ...+.+|...|.+++|+||+++|++++.|++|+|||+ ..+..++++++
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g  244 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG  244 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence            4455678889999999999999983      3346799999999999999999999999999999999 56689999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccc
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREET  225 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~  225 (730)
                      |...|++++|+| .++++++|+.|++|+|||+++++++..+. |.+.|.+++|+++|++|++++. +.|+|||+.++...
T Consensus       245 H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  245 HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence            999999999999 66999999999999999999999998875 8889999999999999999984 45999999998732


Q ss_pred             cCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785          226 SSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (730)
Q Consensus       226 ~~~~~l~~h~~--~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG  273 (730)
                       ....+..+..  .++.+.|+|+++++++...     +|++........+..+..
T Consensus       324 -~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~  377 (456)
T KOG0266|consen  324 -CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSN  377 (456)
T ss_pred             -eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCC
Confidence             0113444433  5999999999999988665     788887766665554443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.89  E-value=3.8e-21  Score=197.85  Aligned_cols=221  Identities=18%  Similarity=0.179  Sum_probs=176.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (730)
                      ....+..++.|+-|+...+|++.+.          .|.+|.+.+.|+.|-.| ..|+++|.|.++.+||+++|+.+..|.
T Consensus       105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~  183 (343)
T KOG0286|consen  105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFH  183 (343)
T ss_pred             ECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEec
Confidence            4567888888888888888887743          37899999999999874 578899999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~  224 (730)
                      +|.+.|.+++++|.+++.+++|+-|++.+|||++.+.+++.|. |...|++++|.|+|.-+++|+|+. .++||++...+
T Consensus       184 GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~  263 (343)
T KOG0286|consen  184 GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE  263 (343)
T ss_pred             CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE
Confidence            9999999999999899999999999999999999999999975 999999999999999999999776 99999999876


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCccccc
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEV  299 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~  299 (730)
                      +. ......-...|++++||..|++|+++..     +||.-.++....|.++.+++.    .+.+    +++...+.++.
T Consensus       264 ~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS----cl~~----s~DG~av~TgS  334 (343)
T KOG0286|consen  264 LA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS----CLGV----SPDGMAVATGS  334 (343)
T ss_pred             Ee-eeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE----EEEE----CCCCcEEEecc
Confidence            54 1111122458999999999998887544     777666666666665444421    2222    44555555555


Q ss_pred             CCCCCCce
Q 004785          300 PLITPPFL  307 (730)
Q Consensus       300 ~~~slpil  307 (730)
                      .+..+++|
T Consensus       335 WDs~lriW  342 (343)
T KOG0286|consen  335 WDSTLRIW  342 (343)
T ss_pred             hhHheeec
Confidence            55444443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.87  E-value=2e-21  Score=206.67  Aligned_cols=221  Identities=18%  Similarity=0.249  Sum_probs=179.6

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      ...+..+.++..++|+..+|.|++|+....   .+.. |...|++++|||+...|+++|+|++|+|||....+.-..+.|
T Consensus       141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G  220 (464)
T KOG0284|consen  141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG  220 (464)
T ss_pred             ceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc
Confidence            444555678899999999999999998765   2344 448999999999999999999999999999999998899999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~  225 (730)
                      |.-.|.+++||| ...++++++.|..|++||.++++++.++ .|+..|..+.|+|++++|++++.|. ++++|+++.+++
T Consensus       221 HgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  221 HGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             CCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            999999999999 9999999999999999999999999886 5899999999999999999999665 999999976654


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCC
Q 004785          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP  305 (730)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slp  305 (730)
                      .   .+.+|...|+++.|+|-..-|++++..+.                      .+.+|...  ....+...+......
T Consensus       300 ~---~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg----------------------svvh~~v~--~~~p~~~i~~AHd~~  352 (464)
T KOG0284|consen  300 F---TYRGHKKDVTSLTWHPLNESLFTSGGSDG----------------------SVVHWVVG--LEEPLGEIPPAHDGE  352 (464)
T ss_pred             H---HhhcchhhheeeccccccccceeeccCCC----------------------ceEEEecc--ccccccCCCcccccc
Confidence            4   67889999999999998887887765211                      12222211  122233334445556


Q ss_pred             ceeeeEecCCCEEEE
Q 004785          306 FLRPSFVRDDERISL  320 (730)
Q Consensus       306 il~p~FSpDg~rI~~  320 (730)
                      +|+..|-|=|-.++-
T Consensus       353 iwsl~~hPlGhil~t  367 (464)
T KOG0284|consen  353 IWSLAYHPLGHILAT  367 (464)
T ss_pred             eeeeeccccceeEee
Confidence            777888887766664

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=2.2e-20  Score=210.17  Aligned_cols=236  Identities=19%  Similarity=0.242  Sum_probs=184.2

Q ss_pred             ecCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           78 RDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        78 ~d~g~~L~Sgs~-DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ...|..|+-++. -|.+.+|+-.+.    +..+|...++++++||||++||+|++|++|||||..+|-|+.+|..|+..|
T Consensus       316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V  395 (893)
T KOG0291|consen  316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV  395 (893)
T ss_pred             cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence            345777776654 468888987655    467999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC--CeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCC
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGELLAVASGHK--LYIWRYNMREETSSP  228 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~--~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~~~  228 (730)
                      +.+.|+. .++.+++.+.||+|+.||+...+..+++....  ...+++.+|.|.++..|+-+.  |+||++++++.+.  
T Consensus       396 t~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD--  472 (893)
T KOG0291|consen  396 TAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD--  472 (893)
T ss_pred             EEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee--
Confidence            9999999 99999999999999999999999988876554  567888899999999998665  9999999999766  


Q ss_pred             eEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCcee
Q 004785          229 RIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR  308 (730)
Q Consensus       229 ~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~  308 (730)
                       .+.+|.++|.+++|+|+|..|++++  ||-                     .|.+|+.-......   ++-......+.
T Consensus       473 -iLsGHEgPVs~l~f~~~~~~LaS~S--WDk---------------------TVRiW~if~s~~~v---Etl~i~sdvl~  525 (893)
T KOG0291|consen  473 -ILSGHEGPVSGLSFSPDGSLLASGS--WDK---------------------TVRIWDIFSSSGTV---ETLEIRSDVLA  525 (893)
T ss_pred             -hhcCCCCcceeeEEccccCeEEecc--ccc---------------------eEEEEEeeccCcee---eeEeeccceeE
Confidence             8899999999999999999555433  321                     23344332221111   11112334667


Q ss_pred             eeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccCCCCCccceecc
Q 004785          309 PSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSP  360 (730)
Q Consensus       309 p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~~~~q~~~~v~p  360 (730)
                      +.|+|||+.|++...+                 .++++|+.....+-..|+-
T Consensus       526 vsfrPdG~elaVaTld-----------------gqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  526 VSFRPDGKELAVATLD-----------------GQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             EEEcCCCCeEEEEEec-----------------ceEEEEEhhhceeeccccc
Confidence            9999999999983221                 2577777765555555543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.86  E-value=2.7e-20  Score=188.07  Aligned_cols=235  Identities=15%  Similarity=0.211  Sum_probs=182.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe--EEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~~~V~  153 (730)
                      ....|++.+.|.+||+|.+.++    ++......|+.+.+.||++.||++++. .|++||+++++  ++..|.+|++.|.
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence            4568899999999999999987    355566779999999999999999875 79999999875  5899999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEe
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVL  232 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~  232 (730)
                      +|.|.- +++.+++|+.||+++|||++...+.+.+.+..+|+++..+|+...|++|.. +.|+|||+.......  ..+.
T Consensus        88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP  164 (311)
T KOG0315|consen   88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP  164 (311)
T ss_pred             EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence            999999 999999999999999999999888889999999999999999999999984 559999998775432  3344


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcc------eeEeccCCccc---C-----------CCCeEEEecC
Q 004785          233 RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS------LTLATSPGYWR---Y-----------PPPVICMAGA  287 (730)
Q Consensus       233 ~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~------~~l~t~sG~~~---~-----------p~~~V~l~d~  287 (730)
                      .....|.++...|||+++++..+     +|++-.....      ..+..+++|.-   +           ....+++|+.
T Consensus       165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence            55678999999999998777544     8877654443      23344444432   1           1233445553


Q ss_pred             CCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       288 ~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      ..-  ..+.....+..--.|.+.||.||++|+-
T Consensus       245 ~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  245 DDF--FKLELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             CCc--eeeEEEeecCCceEEeeeeccCccEEEe
Confidence            222  2222222223334557999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.86  E-value=3.5e-20  Score=200.11  Aligned_cols=211  Identities=15%  Similarity=0.235  Sum_probs=170.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------------
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------  140 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---------------  140 (730)
                      ..|..|++|+.||.+++|+....   .|..|+++|.++.|+.+|.+|++++-|+++.+||..+|.               
T Consensus       245 ~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV  324 (524)
T KOG0273|consen  245 NDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV  324 (524)
T ss_pred             CCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce
Confidence            46889999999999999998765   588999999999999999999999999999999995542               


Q ss_pred             --------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCC
Q 004785          141 --------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRP  193 (730)
Q Consensus       141 --------------------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~  193 (730)
                                                ++.++.+|.+.|.++.|+| .+.+|+++|.|++++||......+...+ .|...
T Consensus       325 dW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske  403 (524)
T KOG0273|consen  325 DWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE  403 (524)
T ss_pred             EEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence                                      3445668999999999999 9999999999999999999888877765 48899


Q ss_pred             eEEEEEcCCC---------CEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCC
Q 004785          194 IASIAFHASG---------ELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE  263 (730)
Q Consensus       194 V~sVafSPdG---------~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~  263 (730)
                      |+.+.|+|+|         ..|++++ +..|++||+..+..+.   .+..|..+|++|+|+|+|++++++.- +      
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---~f~kH~~pVysvafS~~g~ylAsGs~-d------  473 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVAFSPNGRYLASGSL-D------  473 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---eeccCCCceEEEEecCCCcEEEecCC-C------
Confidence            9999999975         3566665 6669999999998654   67899999999999999997765431 1      


Q ss_pred             cceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          264 SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       264 ~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                                      ..|.+|++..+...+...+.    -.++.++|+-+|..|.+
T Consensus       474 ----------------g~V~iws~~~~~l~~s~~~~----~~Ifel~Wn~~G~kl~~  510 (524)
T KOG0273|consen  474 ----------------GCVHIWSTKTGKLVKSYQGT----GGIFELCWNAAGDKLGA  510 (524)
T ss_pred             ----------------CeeEeccccchheeEeecCC----CeEEEEEEcCCCCEEEE
Confidence                            24455554444444433331    22567888888888876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.86  E-value=2.1e-20  Score=192.35  Aligned_cols=166  Identities=20%  Similarity=0.317  Sum_probs=153.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ...|++++-|.+.-+||++++    .+.+|.+.|.+++++| +++.+++|+-|+..+|||++.+.+++.|.+|...|++|
T Consensus       156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv  235 (343)
T KOG0286|consen  156 DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV  235 (343)
T ss_pred             CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceE
Confidence            678999999999999999988    4789999999999999 99999999999999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l  231 (730)
                      +|.| ++.-|++|+.|+++++||++..+.+..+.+.   .+|++++||-.|++|+.|.++. +.+||.-+++...   .+
T Consensus       236 ~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg---~L  311 (343)
T KOG0286|consen  236 RFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG---VL  311 (343)
T ss_pred             EEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE---Ee
Confidence            9999 9999999999999999999999999888755   4899999999999999988554 9999998887644   78


Q ss_pred             ecCCCCeEEEEEccCCCeE
Q 004785          232 LRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~L  250 (730)
                      .+|...|.++..+|||.-+
T Consensus       312 ~GHeNRvScl~~s~DG~av  330 (343)
T KOG0286|consen  312 AGHENRVSCLGVSPDGMAV  330 (343)
T ss_pred             eccCCeeEEEEECCCCcEE
Confidence            8999999999999999733

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=5.7e-20  Score=199.43  Aligned_cols=220  Identities=22%  Similarity=0.294  Sum_probs=180.5

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      .+.+|..++.|.+.|.|+++|.++.    .+.+|+.+|..+.|+| |+..|++|++|+.+++||+.+......+.+|++.
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY  155 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY  155 (487)
T ss_pred             eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence            4568899999999999999997663    5789999999999999 6678889999999999999999876788999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~  230 (730)
                      |.+.+|+|.++.+++||+.||+|++||++.. ..+..+.|..+|.++.|-|.|..++++++..|+|||+-++....  ..
T Consensus       156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll--~~  233 (487)
T KOG0310|consen  156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL--TS  233 (487)
T ss_pred             eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh--hh
Confidence            9999999977889999999999999999987 77888999999999999999999999999999999998776522  34


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeee
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~  310 (730)
                      ...|...|+|+.+..++..|++++=+..++       ....+.|     ..+.-|               .++.|+++.+
T Consensus       234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK-------Vfd~t~~-----Kvv~s~---------------~~~~pvLsia  286 (487)
T KOG0310|consen  234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVK-------VFDTTNY-----KVVHSW---------------KYPGPVLSIA  286 (487)
T ss_pred             hhcccceEEEEEeecCCceEeecccccceE-------EEEccce-----EEEEee---------------ecccceeeEE
Confidence            455999999999999998777665322221       1111122     122222               2566888999


Q ss_pred             EecCCCEEEEEecCC
Q 004785          311 FVRDDERISLQHTEH  325 (730)
Q Consensus       311 FSpDg~rI~~~~~~~  325 (730)
                      .+||+..++++..+.
T Consensus       287 vs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  287 VSPDDQTVVIGMSNG  301 (487)
T ss_pred             ecCCCceEEEecccc
Confidence            999999999855443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.85  E-value=4.9e-20  Score=190.24  Aligned_cols=195  Identities=16%  Similarity=0.189  Sum_probs=170.1

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ...+..+++++.|..|.+|+....     ++++|++.|..+.|.+|++.|++++.|.+|+.||+++|++++.+++|..-|
T Consensus        56 ~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~v  135 (338)
T KOG0265|consen   56 HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFV  135 (338)
T ss_pred             CCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccccee
Confidence            347899999999999999996532     689999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEE
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l  231 (730)
                      +.+.-+..+..++.|++.|++++|||+++..+++++..+..++++.|..++..+.+|+ |+.|++||++......   .+
T Consensus       136 Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~l  212 (338)
T KOG0265|consen  136 NSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TL  212 (338)
T ss_pred             eecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---Ee
Confidence            9998665566788999999999999999999999999999999999999999999998 6779999999887644   88


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEE-----eeCCccCCCccee-EeccCCcc
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLT-LATSPGYW  275 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatg-----svwdl~s~~~~~~-l~t~sG~~  275 (730)
                      .+|.+.|+.+..+++|.++++-+     .+|+++....... +..+.|+.
T Consensus       213 sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~  262 (338)
T KOG0265|consen  213 SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI  262 (338)
T ss_pred             ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence            99999999999999999888743     4888885544332 44444443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.85  E-value=6e-20  Score=192.83  Aligned_cols=183  Identities=17%  Similarity=0.281  Sum_probs=161.5

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ..++.......+++++.|++|++||+.+++    |.||-..|..+++|+--.+|++++.|+.|+-||++..+.++.+.||
T Consensus       155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH  234 (460)
T KOG0285|consen  155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH  234 (460)
T ss_pred             EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccc
Confidence            344455567889999999999999999984    6799999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      -..|++++.+| .-+.+++|+.|.++++||+++...+..+. |...|.++.+.|-...+++|+ |.+|++||++.++...
T Consensus       235 lS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~  313 (460)
T KOG0285|consen  235 LSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI  313 (460)
T ss_pred             cceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence            99999999999 99999999999999999999998888865 999999999999888889998 5569999999988644


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~  260 (730)
                         .+..|...|++++.+|.-..+ ++++-+++.
T Consensus       314 ---tlt~hkksvral~lhP~e~~f-ASas~dnik  343 (460)
T KOG0285|consen  314 ---TLTHHKKSVRALCLHPKENLF-ASASPDNIK  343 (460)
T ss_pred             ---eeecccceeeEEecCCchhhh-hccCCccce
Confidence               778899999999999988744 444433333

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=1.5e-18  Score=173.95  Aligned_cols=182  Identities=24%  Similarity=0.397  Sum_probs=157.4

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ...+..|++++.++.|++|+....    .+..|...+..+.|++++++|++++.|+.|++||+.+++.+..+..|...+.
T Consensus        18 ~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~   97 (289)
T cd00200          18 SPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS   97 (289)
T ss_pred             cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE
Confidence            345688999999999999998865    4678999999999999999999999999999999999888899999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l  231 (730)
                      ++.|++ ++.++++++.|+.|++||+.+++....+. |...+.++.|+|++++|++++ ++.|++||++..+...   .+
T Consensus        98 ~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~  173 (289)
T cd00200          98 SVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---TL  173 (289)
T ss_pred             EEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce---eE
Confidence            999999 78888888889999999999888877765 778999999999999999998 6679999998776533   55


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~  263 (730)
                      ..|...+.++.|+|+++.+++++.     +|++....
T Consensus       174 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~  210 (289)
T cd00200         174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK  210 (289)
T ss_pred             ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence            678889999999999988877764     66665433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.84  E-value=9.9e-20  Score=206.06  Aligned_cols=177  Identities=25%  Similarity=0.363  Sum_probs=150.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+...++..+++++.|++|++||+...     .+++|...|++++|+|+|+++++|+.|++|+|||+++++++..+++|.
T Consensus       209 ~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs  288 (456)
T KOG0266|consen  209 VAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS  288 (456)
T ss_pred             eEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence            334557779999999999999999432     588999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe--EEEEec-CCC--CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSRD-FYR--PIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~i~~l~-h~~--~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~  223 (730)
                      +.|++++|++ +++++++++.|+.|+|||+.++.  +...+. +..  .++++.|+|+|++|++++.++ +++||+..+.
T Consensus       289 ~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~  367 (456)
T KOG0266|consen  289 DGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK  367 (456)
T ss_pred             CceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence            9999999999 99999999999999999999998  444433 322  589999999999999999774 9999999887


Q ss_pred             cccCCeEEecCCC---CeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~---~V~sVaFSPdG~~Llatgs  255 (730)
                      ...   ....|..   .+.+..+++.+++++++..
T Consensus       368 ~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg~~  399 (456)
T KOG0266|consen  368 SVG---TYTGHSNLVRCIFSPTLSTGGKLIYSGSE  399 (456)
T ss_pred             cee---eecccCCcceeEecccccCCCCeEEEEeC
Confidence            644   5556655   3445566778887776654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=5e-20  Score=194.03  Aligned_cols=194  Identities=26%  Similarity=0.370  Sum_probs=172.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      ....|+.|++++.|-.+++||..++     .+.+|...|.++.|-|.|.+|++++.|.+|+.|++.+|.++++|.+|...
T Consensus       158 ~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew  237 (406)
T KOG0295|consen  158 FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW  237 (406)
T ss_pred             EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh
Confidence            3447899999999999999999874     57899999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCC---------------CCEEEEEECCe-E
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS---------------GELLAVASGHK-L  214 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPd---------------G~~LAsgSdd~-I  214 (730)
                      |..++.+. |+.++++++.|.+|++|-+.++++...+ .|...|.+++|-|.               +.++.+++.|+ |
T Consensus       238 vr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI  316 (406)
T KOG0295|consen  238 VRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI  316 (406)
T ss_pred             EEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence            99999999 9999999999999999999999887765 58899999999873               25888998554 9


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY  274 (730)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~  274 (730)
                      ++||+.++..+   ..+.+|..+|+.++|+|.|+||++.+.     +|++....+...+..+.++
T Consensus       317 k~wdv~tg~cL---~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf  378 (406)
T KOG0295|consen  317 KIWDVSTGMCL---FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF  378 (406)
T ss_pred             EEEeccCCeEE---EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence            99999999864   489999999999999999999998776     8888877777766655444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.1e-19  Score=202.30  Aligned_cols=343  Identities=20%  Similarity=0.201  Sum_probs=228.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      +..-...-.++||++|-+|++|+.++.    +|.||.+.|..+.|++.-.+|+++|+|.+|+||+..+++++..+.||..
T Consensus        57 v~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH  136 (1202)
T KOG0292|consen   57 VDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH  136 (1202)
T ss_pred             eeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence            333446678889999999999998865    6899999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe---------------------------EE--EEe-cCCCCeEEEEEc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---------------------------CI--GSR-DFYRPIASIAFH  200 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~---------------------------~i--~~l-~h~~~V~sVafS  200 (730)
                      .|.|.+|+| ..++++|+|.|.+||+||+..-+                           .+  ..+ +|...|+-++|+
T Consensus       137 YVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh  215 (1202)
T KOG0292|consen  137 YVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH  215 (1202)
T ss_pred             EEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec
Confidence            999999999 99999999999999999985311                           01  112 488899999999


Q ss_pred             CCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785          201 ASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY  274 (730)
Q Consensus       201 PdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~  274 (730)
                      |.-.++++|+|++ |++|.++..+... .....+|.+.|.++-|+|....+++.++     +||+.......++..-.++
T Consensus       216 pTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR  294 (1202)
T KOG0292|consen  216 PTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR  294 (1202)
T ss_pred             CCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe
Confidence            9999999999988 9999997665432 3456789999999999999998888776     8888877777666544443


Q ss_pred             ccCC--CCeEE-EecCCCCCCCCcccccCCCCCCce---eeeEecCCCEEEEEecCCCCCcccceeec------------
Q 004785          275 WRYP--PPVIC-MAGAHSSSHPGLAEEVPLITPPFL---RPSFVRDDERISLQHTEHDSGATRTQQSL------------  336 (730)
Q Consensus       275 ~~~p--~~~V~-l~d~~s~d~~~L~~~~~~~slpil---~p~FSpDg~rI~~~~~~~dsgs~~~~~~~------------  336 (730)
                      .-..  -|.+. |+..+.+ ...+.......+.-+.   ..-|.. +++|...-...  ..+..+..+            
T Consensus       295 FW~laahP~lNLfAAgHDs-Gm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t--~~d~~v~~lr~~g~~~~~~~s  370 (1202)
T KOG0292|consen  295 FWILAAHPELNLFAAGHDS-GMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRT--QKDTAVASLRRPGTLWQPPRS  370 (1202)
T ss_pred             EEEEEecCCcceeeeecCC-ceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccc--cccceeEeccCCCcccCCcce
Confidence            2100  00010 0100000 0000111001010111   122222 44444322111  111111111            


Q ss_pred             ---CCCcceeeecccCCCCCccceeccCCCCCCCCCCCCCCccccccccccCCchhhccc-ccccc----CCCCCCCCCC
Q 004785          337 ---RSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGTDSFVSEIDGALPQAAIGA-VGTLD----GLPEERTNYL  408 (730)
Q Consensus       337 ---~ss~~~~l~~~~~~~~q~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~  408 (730)
                         .......|-.++-++..++...-|-++....+..+......--.-|.+++..+.+++ +++-+    .|-+.++..+
T Consensus       371 msYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~  450 (1202)
T KOG0292|consen  371 LSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLL  450 (1202)
T ss_pred             eeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccC
Confidence               122233333334466666777667776655555665666666677899999999998 54443    3333344333


Q ss_pred             C--------------CCCCCCcccccccc
Q 004785          409 P--------------SFGDQTNWELPFLQ  423 (730)
Q Consensus       409 ~--------------~~~~~~~~~~~~~~  423 (730)
                      |              ..+++++--|=++|
T Consensus       451 ~~~~~~IF~ag~g~lll~~~~~v~lfdvQ  479 (1202)
T KOG0292|consen  451 PESTDDIFYAGTGNLLLRSPDSVTLFDVQ  479 (1202)
T ss_pred             cccccceeeccCccEEEEcCCeEEEEEee
Confidence            3              44556655555554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.83  E-value=3.3e-19  Score=180.26  Aligned_cols=194  Identities=20%  Similarity=0.267  Sum_probs=154.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      .....+++.|+.++ ...||+||+.+.      .+.+|...|+++.|.-||+++++||+||++||||++...+-+.|+ |
T Consensus        46 LeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~  123 (311)
T KOG0315|consen   46 LEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-H  123 (311)
T ss_pred             EEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-C
Confidence            33444566666554 567999999876      478999999999999999999999999999999999977666665 7


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--------------------------------------------
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--------------------------------------------  184 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--------------------------------------------  184 (730)
                      ..+|++|..+| +...|++|..+|.|++||+.+..+                                            
T Consensus       124 ~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~  202 (311)
T KOG0315|consen  124 NSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA  202 (311)
T ss_pred             CCCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence            79999999999 888999999999999999976422                                            


Q ss_pred             -----EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785          185 -----IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (730)
Q Consensus       185 -----i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs--  255 (730)
                           +..+ .|.+.+..+.+|||+++||+++.++ ++||+.++.  ......+.+|..++...+||.||+||+++++  
T Consensus       203 s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~  280 (311)
T KOG0315|consen  203 SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDH  280 (311)
T ss_pred             ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCC
Confidence                 0011 2566788899999999999999655 999999877  2223567889999999999999999998776  


Q ss_pred             ---eCCccCCCcceeEeccCCccc
Q 004785          256 ---VNDLDSSESSLTLATSPGYWR  276 (730)
Q Consensus       256 ---vwdl~s~~~~~~l~t~sG~~~  276 (730)
                         +|++..++..   ....||.+
T Consensus       281 ~~rlW~~~~~k~v---~qy~gh~K  301 (311)
T KOG0315|consen  281 TARLWDLSAGKEV---RQYQGHHK  301 (311)
T ss_pred             ceeecccccCcee---eecCCccc
Confidence               7777755543   33455544

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.83  E-value=7.1e-19  Score=198.22  Aligned_cols=235  Identities=17%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      ....+-+.+|..+++|++|++|++||...+    ++..|+..|+.+.|+.+|+.|++.+-||+|+.||+..++..++|..
T Consensus       353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence            334445668899999999999999999884    7899999999999999999999999999999999999999999876


Q ss_pred             CC-CCcEEEEEccCCCCEEEEEeCCC-cEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004785          148 HR-RTPWVVRFHPLNPTIIASGSLDH-EVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (730)
Q Consensus       148 H~-~~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~  223 (730)
                      .. -...|++..| .+.++..|+.|. .|++|++++|+.+-.+ +|.++|.+++|+|+|..|+++|.| +|++||+-...
T Consensus       433 P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  433 PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence            54 3467899999 889998888876 5999999999999886 599999999999999999999954 59999996653


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccc
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEE  298 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~  298 (730)
                      ...   ....+...+..++|+|||+.++++.-     +|+......   ..+..|........ ..        ....+.
T Consensus       512 ~~v---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q---~~~IdgrkD~~~gR-~~--------~D~~ta  576 (893)
T KOG0291|consen  512 GTV---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ---VGSIDGRKDLSGGR-KE--------TDRITA  576 (893)
T ss_pred             cee---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee---eccccchhhccccc-cc--------cceeeh
Confidence            322   35567788999999999998877654     455443222   22233332211110 00        011111


Q ss_pred             cCC-CCCCceeeeEecCCCEEEEEe
Q 004785          299 VPL-ITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       299 ~~~-~slpil~p~FSpDg~rI~~~~  322 (730)
                      ... ..-++-..+||+||..|+++.
T Consensus       577 ~~sa~~K~Ftti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  577 ENSAKGKTFTTICYSADGKCILAGG  601 (893)
T ss_pred             hhcccCCceEEEEEcCCCCEEEecC
Confidence            111 122344799999999999733

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=2.6e-19  Score=188.71  Aligned_cols=174  Identities=17%  Similarity=0.291  Sum_probs=157.2

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ...+..|.+++.|++|+.|+..++    ++.+|..-|..+..+.||.++|++++|.+|++|-+.++++...+++|..+|.
T Consensus       202 ~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE  281 (406)
T KOG0295|consen  202 LPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE  281 (406)
T ss_pred             EecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence            346799999999999999999987    6899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccC--------------CCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEE
Q 004785          154 VVRFHPL--------------NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIW  217 (730)
Q Consensus       154 sVafSP~--------------dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VW  217 (730)
                      +++|.|.              ++.++.+++.|++|++||+.++.++.++ +|...|..++|+|.|+||+++.|++ +++|
T Consensus       282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw  361 (406)
T KOG0295|consen  282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW  361 (406)
T ss_pred             EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence            9999882              2368999999999999999999999886 5999999999999999999999777 9999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |+++.+...   .+..|..-|+++.|+.+-.++ ++|+
T Consensus       362 dl~~~~cmk---~~~ah~hfvt~lDfh~~~p~V-vTGs  395 (406)
T KOG0295|consen  362 DLKNLQCMK---TLEAHEHFVTSLDFHKTAPYV-VTGS  395 (406)
T ss_pred             Eeccceeee---ccCCCcceeEEEecCCCCceE-Eecc
Confidence            999988755   566888999999999988854 4444

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.82  E-value=5.1e-19  Score=191.22  Aligned_cols=173  Identities=20%  Similarity=0.266  Sum_probs=152.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------------------------------------------CCCCCCCCeEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---------------------------------------------PLSPPPRSTIAA  113 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---------------------------------------------~L~gH~~~Vt~l  113 (730)
                      ..+.+|++++.|+++.+||..++                                             ++.+|.+.|.++
T Consensus       286 k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al  365 (524)
T KOG0273|consen  286 KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL  365 (524)
T ss_pred             CCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence            45667899999999999998431                                             356899999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC--------CCEEEEEeCCCcEEEEECCCCeEE
Q 004785          114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN--------PTIIASGSLDHEVRLWNASTAECI  185 (730)
Q Consensus       114 afSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d--------g~lLaSgS~DgtVrLWDl~tg~~i  185 (730)
                      .|+|.|.+|+++|+|++++||+.........|.+|...|+.+.|+|.+        +..+++++.|++|++||+..+.++
T Consensus       366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i  445 (524)
T KOG0273|consen  366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI  445 (524)
T ss_pred             EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence            999999999999999999999999999999999999999999999843        458999999999999999999999


Q ss_pred             EEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          186 GSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       186 ~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+ .|..+|++++|+|+|++||+|+ |+.|.+|+.++++..+    .......|..|+|+.+|.++.++.+
T Consensus       446 ~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~----s~~~~~~Ifel~Wn~~G~kl~~~~s  513 (524)
T KOG0273|consen  446 HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK----SYQGTGGIFELCWNAAGDKLGACAS  513 (524)
T ss_pred             EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE----eecCCCeEEEEEEcCCCCEEEEEec
Confidence            998 7999999999999999999999 5559999999987644    4455677999999999998777665

>PTZ00421 coronin; Provisional

Probab=99.82  E-value=7.7e-18  Score=191.94  Aligned_cols=173  Identities=13%  Similarity=0.197  Sum_probs=141.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      ++..|++++.|++|++||+...           .+.+|...|.+++|+|++ .+|++++.|++|+|||+.+++.+..+.+
T Consensus        87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~  166 (493)
T PTZ00421         87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC  166 (493)
T ss_pred             CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence            5678999999999999998643           367899999999999975 6999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCC-eEEEEEcCCCCEEEEEE-----CCeEEEEEcC
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRP-IASIAFHASGELLAVAS-----GHKLYIWRYN  220 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~-V~sVafSPdG~~LAsgS-----dd~I~VWDl~  220 (730)
                      |...|.+++|+| ++.+|++++.|++|+|||+++++.+..+. |.+. +..+.|.+++..|++++     ++.|++||++
T Consensus       167 h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        167 HSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             CCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            999999999999 99999999999999999999998877654 5443 45678999888777654     3459999998


Q ss_pred             CCccccCCeEEe-cCCCCeEEEEEccCCCeEEEEEe
Q 004785          221 MREETSSPRIVL-RTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       221 t~~~~~~~~~l~-~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +.....  .... .....+....|+++++.+++++.
T Consensus       246 ~~~~p~--~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        246 KMASPY--STVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             CCCCce--eEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence            765321  1222 23445667789999998877663

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=4.3e-19  Score=202.86  Aligned_cols=231  Identities=20%  Similarity=0.252  Sum_probs=174.6

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCC-----------------------------------------------------
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKY-----------------------------------------------------  100 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t-----------------------------------------------------  100 (730)
                      .+..+.+|++|+++++|+.|++|.+..                                                     
T Consensus       272 ~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p  351 (712)
T KOG0283|consen  272 AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLP  351 (712)
T ss_pred             EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCC
Confidence            344567999999999999999998543                                                     


Q ss_pred             -----------CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe
Q 004785          101 -----------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS  169 (730)
Q Consensus       101 -----------~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS  169 (730)
                                 +.+.||.+.|.++.||.+ .+|+++|-|.+||||++...++++.|. |...|+||+|+|.|.++|++|+
T Consensus       352 ~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGS  429 (712)
T KOG0283|consen  352 LKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGS  429 (712)
T ss_pred             CccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecc
Confidence                       024699999999999975 588999999999999999999999997 9999999999999999999999


Q ss_pred             CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEe------cCCCCeEEEE
Q 004785          170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVL------RTRRSLRAVH  242 (730)
Q Consensus       170 ~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~------~h~~~V~sVa  242 (730)
                      .|+.|+||++...+.+...+...-|++++|.|||++.++|+ +|.+++|+....+......+..      .|. .|+.+.
T Consensus       430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q  508 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQ  508 (712)
T ss_pred             cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeE
Confidence            99999999999988888888889999999999999999999 6669999988766533221111      133 799999


Q ss_pred             EccCCC-eEEEEEeeCCccCCCc--ceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEE
Q 004785          243 FHPHAA-PLLLTAEVNDLDSSES--SLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERIS  319 (730)
Q Consensus       243 FSPdG~-~Llatgsvwdl~s~~~--~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~  319 (730)
                      |.|... .+++|+++-.++.-+.  ..++.-+.|+.                         -.. ......|+.||+.|+
T Consensus       509 ~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~-------------------------n~~-SQ~~Asfs~Dgk~IV  562 (712)
T KOG0283|consen  509 FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR-------------------------NTS-SQISASFSSDGKHIV  562 (712)
T ss_pred             ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc-------------------------cCC-cceeeeEccCCCEEE
Confidence            998654 3666655433332222  22222222221                         111 123568999999999


Q ss_pred             EEecCCCCCcccceeecC
Q 004785          320 LQHTEHDSGATRTQQSLR  337 (730)
Q Consensus       320 ~~~~~~dsgs~~~~~~~~  337 (730)
                      ...  +|.  .+|.|..+
T Consensus       563 s~s--eDs--~VYiW~~~  576 (712)
T KOG0283|consen  563 SAS--EDS--WVYIWKND  576 (712)
T ss_pred             Eee--cCc--eEEEEeCC
Confidence            855  444  34555544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3.4e-19  Score=180.58  Aligned_cols=187  Identities=18%  Similarity=0.265  Sum_probs=158.9

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      +.......+++++.||++++||....     .++.|...|.++.|++ ++..++++|.|++||+|+...++.+.+|+||.
T Consensus        68 Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~  147 (311)
T KOG0277|consen   68 WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN  147 (311)
T ss_pred             ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence            34456778889999999999996432     4789999999999999 67788888999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCCCCeEEEEEcC-CCCEEEEEECC-eEEEEEcCCCcccc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHA-SGELLAVASGH-KLYIWRYNMREETS  226 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l~h~~~V~sVafSP-dG~~LAsgSdd-~I~VWDl~t~~~~~  226 (730)
                      ..|+..+|+|...++++++|.|+++++||++. |+.+....|...|.++.|+. +.+.|++|+.+ .|++||+++-+.  
T Consensus       148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--  225 (311)
T KOG0277|consen  148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--  225 (311)
T ss_pred             cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--
Confidence            99999999999999999999999999999986 55555556888999999987 45688888844 599999988765  


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCc
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES  264 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~  264 (730)
                      ....+.+|.-.|+.|.|||...-++++++      +|+....+.
T Consensus       226 pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds  269 (311)
T KOG0277|consen  226 PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS  269 (311)
T ss_pred             cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence            45678899999999999999888887665      666654443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.81  E-value=2.1e-17  Score=198.95  Aligned_cols=178  Identities=18%  Similarity=0.273  Sum_probs=148.6

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----C-------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----P-------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL  142 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~-------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l  142 (730)
                      .+...++..+++++.|++|++|+....    .       ...+...|.+++|++ ++.+|++++.|++|+|||+.+++.+
T Consensus       489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~  568 (793)
T PLN00181        489 IGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV  568 (793)
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            344457789999999999999997531    0       012346789999988 5789999999999999999999999


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEc-CCCCEEEEEEC-CeEEEEEcC
Q 004785          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH-ASGELLAVASG-HKLYIWRYN  220 (730)
Q Consensus       143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafS-PdG~~LAsgSd-d~I~VWDl~  220 (730)
                      ..+++|.+.|++++|+|.++.+|++|+.|++|++||+++++.+..+.+...+.++.|+ ++|.+|++|+. +.|++||++
T Consensus       569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~  648 (793)
T PLN00181        569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLR  648 (793)
T ss_pred             EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            9999999999999999767899999999999999999999988888777889999995 57999999995 459999998


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ....  ....+.+|...|.++.|. ++.++++++.
T Consensus       649 ~~~~--~~~~~~~h~~~V~~v~f~-~~~~lvs~s~  680 (793)
T PLN00181        649 NPKL--PLCTMIGHSKTVSYVRFV-DSSTLVSSST  680 (793)
T ss_pred             CCCc--cceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence            7653  123567899999999997 6776776654

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.80  E-value=8.1e-20  Score=194.58  Aligned_cols=172  Identities=16%  Similarity=0.230  Sum_probs=151.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPW  153 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~  153 (730)
                      ..|++|++|+..|.+.+|+..+.    .+..|...|.++.|+++|.++++|..+|.||+|+..-. .++.++.|. ..|.
T Consensus       106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIR  184 (464)
T KOG0284|consen  106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIR  184 (464)
T ss_pred             CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhh
Confidence            46789999999999999998765    36799999999999999999999999999999997544 455565555 8999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l  231 (730)
                      +++|+| +...|++++.|++|+|||....+.... .+|.-.|.++.|+|.-.+||+++++. |++||.+++.++.   .+
T Consensus       185 dlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tl  260 (464)
T KOG0284|consen  185 DLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TL  260 (464)
T ss_pred             eeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hh
Confidence            999999 889999999999999999998766555 46888999999999999999999776 9999999999765   78


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..|...|..+.|+|++++|++.++
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~sk  284 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSK  284 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccC
Confidence            899999999999999998888766

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.6e-18  Score=197.52  Aligned_cols=248  Identities=17%  Similarity=0.235  Sum_probs=186.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      .+-.|.++-..|.|++||.+.+    ++.+|.++|..++|+|++.++++|++|.+|+||+..+.+++.++.||.+.|..+
T Consensus        20 ~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~   99 (1202)
T KOG0292|consen   20 KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV   99 (1202)
T ss_pred             CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence            4556778888999999999877    578999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc--------
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET--------  225 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~--------  225 (730)
                      .||+ ..-+++|+|.|.+|+||+..+++++..+ +|...|.|..|+|....++++| |.+|+|||+..-...        
T Consensus       100 ~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e  178 (1202)
T KOG0292|consen  100 FFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLE  178 (1202)
T ss_pred             eccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCch
Confidence            9999 8899999999999999999999999985 6999999999999999999999 667999998532110        


Q ss_pred             ------------------cCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCC----
Q 004785          226 ------------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYP----  278 (730)
Q Consensus       226 ------------------~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p----  278 (730)
                                        -....+.+|+..|+-++|+|.-..+++++.     .|.+...+ .....+-.||.+..    
T Consensus       179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvl  257 (1202)
T KOG0292|consen  179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVL  257 (1202)
T ss_pred             hhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEE
Confidence                              012456789999999999999986666655     34332111 01223334443322    


Q ss_pred             -------------CCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceee
Q 004785          279 -------------PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS  335 (730)
Q Consensus       279 -------------~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~  335 (730)
                                   ...+.+||...........-..+   ++|..+--|..+..+++   +|+|-.++-.+
T Consensus       258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend---RFW~laahP~lNLfAAg---HDsGm~VFkle  321 (1202)
T KOG0292|consen  258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND---RFWILAAHPELNLFAAG---HDSGMIVFKLE  321 (1202)
T ss_pred             ecCccceeEecCCCccEEEEecccccceeeeeccCC---eEEEEEecCCcceeeee---cCCceEEEEEc
Confidence                         23455666655555544433222   45555555555555543   44444444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.9e-18  Score=191.52  Aligned_cols=180  Identities=16%  Similarity=0.296  Sum_probs=160.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V~s  154 (730)
                      -+..+++|++|..|++|+..+.    .+..|++.|.|++.+|...+++++|+|.+|++||-+.+ .+.++|.||...|..
T Consensus        66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq  145 (794)
T KOG0276|consen   66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ  145 (794)
T ss_pred             ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence            5678999999999999999886    58899999999999999999999999999999999774 678999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCC--CEEEEEECCe-EEEEEcCCCccccCCeE
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG--ELLAVASGHK-LYIWRYNMREETSSPRI  230 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG--~~LAsgSdd~-I~VWDl~t~~~~~~~~~  230 (730)
                      |+|+|.|.+.++|++.|++|++|.+....+..++. |...|+++.|-+-|  .+|++|+|+. |+|||+++...+.   .
T Consensus       146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---T  222 (794)
T KOG0276|consen  146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---T  222 (794)
T ss_pred             EEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---H
Confidence            99999999999999999999999999888877764 99999999998866  4999999877 9999999998766   7


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS  262 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~  262 (730)
                      +.+|...|..+.|+|.-..+++++++..++.|
T Consensus       223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW  254 (794)
T KOG0276|consen  223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIW  254 (794)
T ss_pred             hhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence            88999999999999999966666654444433

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=1.5e-18  Score=195.61  Aligned_cols=173  Identities=21%  Similarity=0.299  Sum_probs=157.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~-------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (730)
                      ..-..+++++.|.++++|++...             ....|...|+|++.+|+.++|||||.|++.+||+++.+....+|
T Consensus       422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL  501 (775)
T KOG0319|consen  422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL  501 (775)
T ss_pred             cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence            34568899999999999998651             13479999999999999999999999999999999999999999


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~  223 (730)
                      .||+..|++|.|+| ..++++|+|.|++|+||.+.+..|++++. |...|..+.|-.+|+.|++++.++ |+||++++.+
T Consensus       502 sGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             eCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            99999999999999 89999999999999999999999999987 999999999999999999988555 9999999998


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...   .+..|.+.|++++-++.+..+++++.
T Consensus       581 C~~---tlD~H~DrvWaL~~~~~~~~~~tgg~  609 (775)
T KOG0319|consen  581 CEM---TLDAHNDRVWALSVSPLLDMFVTGGG  609 (775)
T ss_pred             hhh---hhhhccceeEEEeecCccceeEecCC
Confidence            755   78899999999999999996665544

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.7e-17  Score=169.72  Aligned_cols=174  Identities=21%  Similarity=0.312  Sum_probs=149.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-----C---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEEecCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYC-----P---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLHGHRR  150 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~-----~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~gH~~  150 (730)
                      |..|++++.|+.|++|+...+     +   =.+|+..|..++|+|.|++|+++|.|.++.||.-..+  +++..+.||..
T Consensus        27 g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn  106 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN  106 (312)
T ss_pred             ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc
Confidence            558999999999999998732     1   2379999999999999999999999999999986544  67899999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe---EEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE---CIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREET  225 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~---~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~  225 (730)
                      .|.+++|++ ++++||+++.|+.|-||.+..+.   +...+ +|...|..+.|||...+|++++ |++|++|+-.....-
T Consensus       107 EVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW  185 (312)
T KOG0645|consen  107 EVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDW  185 (312)
T ss_pred             ceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCe
Confidence            999999999 99999999999999999998553   44555 4899999999999999999999 666999987744332


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .....+.+|...|.+++|++.|..|+++..
T Consensus       186 ~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd  215 (312)
T KOG0645|consen  186 ECVQTLDGHENTVWSLAFDNIGSRLVSCSD  215 (312)
T ss_pred             eEEEEecCccceEEEEEecCCCceEEEecC
Confidence            234578889999999999999988888765

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.79  E-value=5.3e-19  Score=185.01  Aligned_cols=205  Identities=15%  Similarity=0.233  Sum_probs=166.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ..-+...+++|..|.+|++||..+-    +|.||++.|.|+.|.  .+.|++|+.|.+|+|||.++|++++++-+|...|
T Consensus       203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaV  280 (499)
T KOG0281|consen  203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAV  280 (499)
T ss_pred             EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhccee
Confidence            3346678999999999999998764    689999999999995  6799999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE----ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~----l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~  227 (730)
                      ..+.|+.   .++++++.|.+|.+||+.....+..    .+|...|+.+.|+  .++++++++++ |++|++.+.+.++ 
T Consensus       281 Lhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR-  354 (499)
T KOG0281|consen  281 LHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR-  354 (499)
T ss_pred             EEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh-
Confidence            9999964   8999999999999999987653322    4689999999996  45999998666 9999999998765 


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccC------------CCCeEEEecCCCC
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY------------PPPVICMAGAHSS  290 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~------------p~~~V~l~d~~s~  290 (730)
                        .+.+|...|.++.+  .|++++++++     +|++..+.+...+.++...++.            -...+.+|+....
T Consensus       355 --tl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  355 --TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             --hhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccc
Confidence              78899999998887  4775555444     7888877776666654333220            1256788887766


Q ss_pred             CCC
Q 004785          291 SHP  293 (730)
Q Consensus       291 d~~  293 (730)
                      ...
T Consensus       431 ldp  433 (499)
T KOG0281|consen  431 LDP  433 (499)
T ss_pred             cCC
Confidence            554

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.79  E-value=6.2e-19  Score=191.21  Aligned_cols=215  Identities=16%  Similarity=0.220  Sum_probs=167.0

Q ss_pred             CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC-CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      .+.+|+..|+++.|.| .+.+|++++.|+.|+||++-. ++++++|.+|..+|..++|+. .+..|+|++.|+.|++||+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence            5789999999999999 899999999999999999977 899999999999999999999 9999999999999999999


Q ss_pred             CCCeEEEEecCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785          180 STAECIGSRDFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (730)
Q Consensus       180 ~tg~~i~~l~h~~~V~sVafSPdG-~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs--  255 (730)
                      .+|+++..+.....++++.|+||+ +.+++|+ +++|+.||+++++.++   ....|-..|..+.|-++|+++++++.  
T Consensus       288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk  364 (503)
T KOG0282|consen  288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK  364 (503)
T ss_pred             ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence            999999999999999999999999 5666665 6669999999999766   67778899999999999999999887  


Q ss_pred             ---eCCccCCCcceeEeccCCccc-----CC----------CCeEEEecCCCCCCCCcccccCCCCCCce--eeeEecCC
Q 004785          256 ---VNDLDSSESSLTLATSPGYWR-----YP----------PPVICMAGAHSSSHPGLAEEVPLITPPFL--RPSFVRDD  315 (730)
Q Consensus       256 ---vwdl~s~~~~~~l~t~sG~~~-----~p----------~~~V~l~d~~s~d~~~L~~~~~~~slpil--~p~FSpDg  315 (730)
                         +|+.+..-....+....-|..     +|          ...+.+-.+.............+...+-.  .+.|||||
T Consensus       365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG  444 (503)
T KOG0282|consen  365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG  444 (503)
T ss_pred             cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence               666553333222222111110     11          12222222233333333333333444444  68999999


Q ss_pred             CEEEE
Q 004785          316 ERISL  320 (730)
Q Consensus       316 ~rI~~  320 (730)
                      +.|+-
T Consensus       445 ~~l~S  449 (503)
T KOG0282|consen  445 RTLCS  449 (503)
T ss_pred             CeEEe
Confidence            99995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.79  E-value=2.5e-17  Score=165.03  Aligned_cols=172  Identities=27%  Similarity=0.421  Sum_probs=150.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      .+..++++..++.|.+||..+.    .+..|...|.++.|+|++.+|++++.|+.|++||+.+++.+..+..|...|.++
T Consensus       104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  183 (289)
T cd00200         104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV  183 (289)
T ss_pred             CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE
Confidence            3567777777999999999854    366799999999999999999998889999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      .|+| +++.+++++.|+.|++||+++++.+..+ .+...+.++.|+|++.++++++ ++.|++||+.+++...   .+..
T Consensus       184 ~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~~  259 (289)
T cd00200         184 AFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQ---TLSG  259 (289)
T ss_pred             EECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEE---Eccc
Confidence            9999 8888888888999999999998888887 6888999999999999999888 6779999998776543   4557


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |...|.++.|+++++++++++.
T Consensus       260 ~~~~i~~~~~~~~~~~l~~~~~  281 (289)
T cd00200         260 HTNSVTSLAWSPDGKRLASGSA  281 (289)
T ss_pred             cCCcEEEEEECCCCCEEEEecC
Confidence            8889999999999997777654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.79  E-value=8e-18  Score=177.00  Aligned_cols=183  Identities=19%  Similarity=0.257  Sum_probs=160.7

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      +.+.-.-+++++++|+.|+.||+++.+    +.||-..|.|++..|.-..|++|+.|.+++|||+++...+..+.||+.+
T Consensus       200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~  279 (460)
T KOG0285|consen  200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP  279 (460)
T ss_pred             eecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence            344566799999999999999999874    6799999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~  230 (730)
                      |..+.+.| ..-.+++||.|++|++||++.|+.... +.|+..+.+++.+|....+|+++.+.|+-|++..+....   -
T Consensus       280 V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~---n  355 (460)
T KOG0285|consen  280 VASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQ---N  355 (460)
T ss_pred             ceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhh---c
Confidence            99999999 677899999999999999999987766 458889999999999999999999999999999988655   4


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~  263 (730)
                      +.+|...|..+....||- +++++.     .||.+++.
T Consensus       356 lsgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  356 LSGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             cccccceeeeeeeccCce-EEEcCCceEEEEEecCcCc
Confidence            788999999999999885 444443     55555433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.78  E-value=7.3e-17  Score=194.25  Aligned_cols=174  Identities=16%  Similarity=0.189  Sum_probs=145.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      .+..|++++.|++|++||..++    .+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus       544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~  622 (793)
T PLN00181        544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC  622 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence            4678999999999999999876    4679999999999997 8899999999999999999999998888765 57999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc---ccCC
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE---TSSP  228 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~---~~~~  228 (730)
                      +.|++.++.++++|+.|++|++||+++++ .+.. ..|...|.++.|. ++.+|++++. +.|+|||++....   ....
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            99976589999999999999999998765 3333 4688999999997 6788888885 5599999975421   1123


Q ss_pred             eEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          229 RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       229 ~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+.+|...+..+.|++++.++++++.
T Consensus       702 ~~~~gh~~~i~~v~~s~~~~~lasgs~  728 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVSDGYIATGSE  728 (793)
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence            456788999999999999997777664

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.78  E-value=8.2e-19  Score=190.28  Aligned_cols=144  Identities=23%  Similarity=0.324  Sum_probs=130.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ..+..|.+++.|+.|++|++...     ++.+|..+|.++.|+.+|..|++++.|+.|++||+++|+++..|.. ...++
T Consensus       225 ~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~  303 (503)
T KOG0282|consen  225 KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPT  303 (503)
T ss_pred             ceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCce
Confidence            36788899999999999998752     6889999999999999999999999999999999999999998863 35688


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~  223 (730)
                      ++.|+|++.+.|++|+.|+.|+.||+++++.++.+. |-+.|..+.|-++|+.+++.+|++ ++||+.+..-
T Consensus       304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v  375 (503)
T KOG0282|consen  304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV  375 (503)
T ss_pred             eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc
Confidence            999999777999999999999999999999888876 778999999999999999999777 9999988764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.78  E-value=8.8e-18  Score=183.08  Aligned_cols=181  Identities=16%  Similarity=0.179  Sum_probs=141.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC--------CC-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC--------PL-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--  143 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~--------~L-~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--  143 (730)
                      .+....|.++++|+-|-+|++||+..-        .| ......|.++.|++.|..|++.+..-..+|+|-.....+.  
T Consensus       173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~  252 (641)
T KOG0772|consen  173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFS  252 (641)
T ss_pred             eeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeee
Confidence            345568899999999999999998642        12 2344579999999999999888888899999954332222  


Q ss_pred             ----------EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEEec------CCCCeEEEEEcCCCCEE
Q 004785          144 ----------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSRD------FYRPIASIAFHASGELL  206 (730)
Q Consensus       144 ----------~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~l~------h~~~V~sVafSPdG~~L  206 (730)
                                .-+||...+++..|+|.+...|++++.|++++|||+...+. ...+.      ..-.+.+++|++||+++
T Consensus       253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i  332 (641)
T KOG0772|consen  253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI  332 (641)
T ss_pred             ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh
Confidence                      22689999999999999999999999999999999986543 22332      23478999999999999


Q ss_pred             EEEEC-CeEEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEe
Q 004785          207 AVASG-HKLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       207 AsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~--~V~sVaFSPdG~~Llatgs  255 (730)
                      |.|+. +.|.+||...............|..  .|++|.||+||++|++-+.
T Consensus       333 Aagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~  384 (641)
T KOG0772|consen  333 AAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF  384 (641)
T ss_pred             hhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC
Confidence            99995 5599999866654333344556766  8999999999999887654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=4.1e-17  Score=166.87  Aligned_cols=206  Identities=23%  Similarity=0.394  Sum_probs=153.8

Q ss_pred             CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCC---eEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          102 PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG---SCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg---~~l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      ++.+|++.+..++|+|- |..||+|+.|+.|+||+...+   .+...+ .+|+..|.+++|+| .+++|+++|.|.++.|
T Consensus         9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I   87 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI   87 (312)
T ss_pred             eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence            57899999999999996 889999999999999998853   344444 47999999999999 9999999999999999


Q ss_pred             EECCCC--eEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          177 WNASTA--ECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       177 WDl~tg--~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      |.-..+  +++..+ +|...|.+++|+++|++||+++.++ |.||.+....+......+.+|...|..+.|+|... |++
T Consensus        88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~  166 (312)
T KOG0645|consen   88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLF  166 (312)
T ss_pred             eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeE
Confidence            987654  566665 4999999999999999999999666 99999987776666678899999999999999888 444


Q ss_pred             EEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccc
Q 004785          253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT  332 (730)
Q Consensus       253 tgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~  332 (730)
                      +++.++                      .|+++....++.-.+.....+....+|...|.+.|.+++-  .+++.-...+
T Consensus       167 S~SYDn----------------------TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s--~sdD~tv~Iw  222 (312)
T KOG0645|consen  167 SCSYDN----------------------TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS--CSDDGTVSIW  222 (312)
T ss_pred             EeccCC----------------------eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE--ecCCcceEee
Confidence            444221                      2222221112222222222223345667888888888775  3334333344


Q ss_pred             e
Q 004785          333 Q  333 (730)
Q Consensus       333 ~  333 (730)
                      .
T Consensus       223 ~  223 (312)
T KOG0645|consen  223 R  223 (312)
T ss_pred             e
Confidence            3

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.77  E-value=9.5e-17  Score=175.60  Aligned_cols=174  Identities=22%  Similarity=0.289  Sum_probs=142.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---------
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP----LS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL---------  142 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~----L~---gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l---------  142 (730)
                      .++.++++.+.|++|.+||-+++.    |.   +|++.|.+++|+||+++|++++.|.++||||+.+.+++         
T Consensus       200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v  279 (603)
T KOG0318|consen  200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV  279 (603)
T ss_pred             CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence            468999999999999999999873    44   89999999999999999999999999999999665333         


Q ss_pred             ----------------------------------EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE--
Q 004785          143 ----------------------------------KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--  186 (730)
Q Consensus       143 ----------------------------------~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~--  186 (730)
                                                        +.+.||...|+++..+| ++.+|++|+.||.|.-||+.+|..-+  
T Consensus       280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~  358 (603)
T KOG0318|consen  280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWDSGSGTSDRLA  358 (603)
T ss_pred             hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEecCCccccccc
Confidence                                              33458999999999999 88999999999999999987654300  


Q ss_pred             -----------------------------Ee------------------------------------------c------
Q 004785          187 -----------------------------SR------------------------------------------D------  189 (730)
Q Consensus       187 -----------------------------~l------------------------------------------~------  189 (730)
                                                   .+                                          .      
T Consensus       359 g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~  438 (603)
T KOG0318|consen  359 GKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVS  438 (603)
T ss_pred             cccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcce
Confidence                                         00                                          0      


Q ss_pred             ---CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          190 ---FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       190 ---h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                         ..-...+++++|++..+++|+. ++|+||.+...+... ......|...|+.++||||+.+|+++.
T Consensus       439 ~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h~a~iT~vaySpd~~yla~~D  506 (603)
T KOG0318|consen  439 SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEHRAAITDVAYSPDGAYLAAGD  506 (603)
T ss_pred             eeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccc-eeeeecccCCceEEEECCCCcEEEEec
Confidence               0011347899999999999994 559999998766432 456788999999999999999877654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.77  E-value=2.5e-17  Score=174.53  Aligned_cols=181  Identities=19%  Similarity=0.266  Sum_probs=159.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---------------
Q 004785           81 RRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------------  137 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~--------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~---------------  137 (730)
                      ...+++++.|.++++|..+.+.        -.||.+.|-++...++|..+++|+.|.+|+||+..               
T Consensus       159 ~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rr  238 (423)
T KOG0313|consen  159 SCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRR  238 (423)
T ss_pred             cceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhh
Confidence            3468999999999999987652        24999999999999999999999999999999931               


Q ss_pred             ----------CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEE
Q 004785          138 ----------TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (730)
Q Consensus       138 ----------tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LA  207 (730)
                                ++.++..+.||+.+|.+|.|++  ...+++++.|.+|+.||+.++..+..+..+..++++..+|..++|+
T Consensus       239 k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~  316 (423)
T KOG0313|consen  239 KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLA  316 (423)
T ss_pred             hhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceee
Confidence                      1235667889999999999986  7889999999999999999999999998899999999999999999


Q ss_pred             EEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCC
Q 004785          208 VASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE  263 (730)
Q Consensus       208 sgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~  263 (730)
                      +|+.+. |++||.+++........+.+|...|.++.|+|...+++++++      +||+++..
T Consensus       317 ~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k  379 (423)
T KOG0313|consen  317 SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK  379 (423)
T ss_pred             ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence            999766 999999988665556788999999999999999999988776      88888655

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=1e-17  Score=188.97  Aligned_cols=193  Identities=21%  Similarity=0.249  Sum_probs=164.2

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE-----EE
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-----LK  143 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~-----l~  143 (730)
                      .+.+..|+++++|+++++|.++..        ...+|...|.+++++..+ .+|+++|.|+++++|++...+.     +.
T Consensus       374 ~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~  453 (775)
T KOG0319|consen  374 WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL  453 (775)
T ss_pred             cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence            356689999999999999977322        467999999999998744 6899999999999999976221     11


Q ss_pred             ----EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEE
Q 004785          144 ----VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIW  217 (730)
Q Consensus       144 ----~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VW  217 (730)
                          ....|...|++++++| +..+++|||.|++.+||++...+....+ +|...|.++.|+|..+.|+++|.|+ |+||
T Consensus       454 ~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  454 TCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW  532 (775)
T ss_pred             hhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence                2257999999999999 9999999999999999999988888776 5999999999999999999999655 9999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY  274 (730)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~  274 (730)
                      .+.+.....   .+.+|...|..+.|-.+|+.|++++.     +|++.+.++..++-.+...
T Consensus       533 ~is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr  591 (775)
T KOG0319|consen  533 SISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR  591 (775)
T ss_pred             Eeccceeee---eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence            999998755   78899999999999999999998876     8888887777766655444

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.3e-16  Score=164.35  Aligned_cols=179  Identities=19%  Similarity=0.294  Sum_probs=148.7

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEEEEec
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~g  147 (730)
                      .+.-.+.|..+++.++|.++++||...++    +..++..|..+.|......++.++.  |.+|+..++.+.+.++.|.|
T Consensus        19 sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~G   98 (311)
T KOG1446|consen   19 SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPG   98 (311)
T ss_pred             EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCC
Confidence            34456789999999999999999998873    5567778999999987777777766  89999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcccc
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETS  226 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~  226 (730)
                      |...|..++.+| .++.++|++.|++|++||++..++...+..... ..++|+|.|-++|++.+. .|++||++.-..-.
T Consensus        99 H~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP  176 (311)
T KOG1446|consen   99 HKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELIKLYDLRSFDKGP  176 (311)
T ss_pred             CCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence            999999999999 779999999999999999998888777664443 357899999999999976 59999998764321


Q ss_pred             CCeEEe---cCCCCeEEEEEccCCCeEEEEEe
Q 004785          227 SPRIVL---RTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       227 ~~~~l~---~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       ...+.   ........+.|||||++|+.+.+
T Consensus       177 -F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~  207 (311)
T KOG1446|consen  177 -FTTFSITDNDEAEWTDLEFSPDGKSILLSTN  207 (311)
T ss_pred             -ceeEccCCCCccceeeeEEcCCCCEEEEEeC
Confidence             11111   23567889999999999988765

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.76  E-value=4e-17  Score=190.84  Aligned_cols=179  Identities=21%  Similarity=0.271  Sum_probs=149.1

Q ss_pred             EEEecCCCEEEEEe--CCCeEEEEeCCC----------------CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC
Q 004785           75 EAGRDARRGLASWV--EAESLHHLRPKY----------------CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC  136 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs--~DgsIrlWd~~t----------------~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl  136 (730)
                      +....++..+++|+  .|+.+++|+.+.                +++..|.+.|+|+.|++||++||+||+|+.|.||+.
T Consensus        19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~   98 (942)
T KOG0973|consen   19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWER   98 (942)
T ss_pred             EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeee
Confidence            34456778889998  888999998752                235689999999999999999999999999999987


Q ss_pred             CC------------------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEE
Q 004785          137 QT------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASI  197 (730)
Q Consensus       137 ~t------------------g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sV  197 (730)
                      ..                  .+.+..+.+|...|..+.|+| ++.++++++.|++|.|||.++.+.+..+ +|.+.|..+
T Consensus        99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGv  177 (942)
T KOG0973|consen   99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGV  177 (942)
T ss_pred             cccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccce
Confidence            62                  146778899999999999999 9999999999999999999999888876 499999999


Q ss_pred             EEcCCCCEEEEEECCe-EEEEEcCCCcccc---CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          198 AFHASGELLAVASGHK-LYIWRYNMREETS---SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       198 afSPdG~~LAsgSdd~-I~VWDl~t~~~~~---~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .|+|-|+|||+-+||+ |+||++.+.....   .+.........++.+.|||||.+|++.-
T Consensus       178 s~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  178 SWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             EECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            9999999999999877 9999976643322   1222223355788999999999888744

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=4.3e-17  Score=163.93  Aligned_cols=169  Identities=22%  Similarity=0.269  Sum_probs=147.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      .+|+...+++.|++|++|+...+    ++.+|...|..++.+.|...|++|+.|+.|.+||+++|+.++.|.+|.+.|+.
T Consensus        27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNt  106 (307)
T KOG0316|consen   27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNT  106 (307)
T ss_pred             cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeE
Confidence            47788889999999999999877    57799999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCC--eEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg--~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~  230 (730)
                      ++|+. +...+++|+.|.++++||-++.  ++++.+. ..+.|.++...  +..++.|+ |++++.||++.+....    
T Consensus       107 V~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s----  179 (307)
T KOG0316|consen  107 VRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS----  179 (307)
T ss_pred             EEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh----
Confidence            99998 9999999999999999999874  5677765 66788888875  56677777 7779999999997633    


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       .-...+|+++.|++||+..++++-
T Consensus       180 -Dy~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  180 -DYFGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             -hhcCCcceeEEecCCCCEEEEeec
Confidence             223568999999999998777653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.75  E-value=1.4e-17  Score=172.97  Aligned_cols=176  Identities=19%  Similarity=0.245  Sum_probs=152.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC------------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCP------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~------------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~  144 (730)
                      .+.++..|++++.||-|.+|+..+++            +.-+...|.|+.||.|...||+|+.||.|+||.+++|.+++.
T Consensus       221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr  300 (508)
T KOG0275|consen  221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR  300 (508)
T ss_pred             eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH
Confidence            35688999999999999999998874            335788999999999999999999999999999999999999


Q ss_pred             Ee-cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004785          145 LH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (730)
Q Consensus       145 l~-gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t  221 (730)
                      |. .|+..|+++.|+. ++..+++++.|.+++|.-+++|++++.+ +|...|+.+.|.+||..+++++ |++|+||+..+
T Consensus       301 FdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  301 FDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             hhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence            96 8999999999999 8899999999999999999999999886 5899999999999999999988 55699999999


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .+... .....+....|.++..-|...--+..+
T Consensus       380 teC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC  411 (508)
T KOG0275|consen  380 TECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC  411 (508)
T ss_pred             hhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence            88765 233344667889988888665433333

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.75  E-value=1.8e-17  Score=179.07  Aligned_cols=182  Identities=18%  Similarity=0.228  Sum_probs=151.0

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC--CC
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ--TG  139 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~--tg  139 (730)
                      +.+.......|++++.|++|.+||+...           .+.+|...|..++|++ +..+|+++++|+.+.|||++  +.
T Consensus       183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~  262 (422)
T KOG0264|consen  183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS  262 (422)
T ss_pred             cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence            3444556778999999999999998643           2679999999999999 77889999999999999999  55


Q ss_pred             eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEE
Q 004785          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLY  215 (730)
Q Consensus       140 ~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~h~~~V~sVafSPdG~-~LAsgS-dd~I~  215 (730)
                      ++....++|.+.|+|++|+|.++.+||+||.|++|+|||+++-. ++..+ .|...|..|.|+|... .||+++ |+++.
T Consensus       263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~  342 (422)
T KOG0264|consen  263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN  342 (422)
T ss_pred             CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence            66778899999999999999999999999999999999999743 44444 5999999999999876 677666 55599


Q ss_pred             EEEcCCCcccc-----------CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          216 IWRYNMREETS-----------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       216 VWDl~t~~~~~-----------~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |||+..-...+           ..+...+|...|..+.|+|+..+++++..
T Consensus       343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva  393 (422)
T KOG0264|consen  343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA  393 (422)
T ss_pred             EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence            99997644321           12445578899999999999999888776

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=7.4e-18  Score=192.85  Aligned_cols=147  Identities=21%  Similarity=0.344  Sum_probs=128.7

Q ss_pred             CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--------------------------------C---------
Q 004785          102 PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--------------------------------G---------  139 (730)
Q Consensus       102 ~L~-gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t--------------------------------g---------  139 (730)
                      .+. .|.+.|.++.||+||++||+|+.|+.|+||.+..                                .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            355 8999999999999999999999999999998744                                0         


Q ss_pred             -------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEc
Q 004785          140 -------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH  200 (730)
Q Consensus       140 -------------------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafS  200 (730)
                                         +++..|+||.+.|..+.|+.  .++|++++.|.||+||++...+|++.|.|.+.|+||+|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                               23445679999999999995  789999999999999999999999999999999999999


Q ss_pred             C-CCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          201 A-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       201 P-dG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      | |.+|+++|+ |++|+||++...+...    ......-|++++|.|||++.+++.
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCCceEEEEE
Confidence            9 677999999 8889999998876533    445568899999999999777654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.74  E-value=4.7e-16  Score=178.39  Aligned_cols=210  Identities=20%  Similarity=0.274  Sum_probs=178.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      +..+++++.+.+|++||...+     .+.||.+.|.+++|..-+.+|++|+.|.++++||+.+|+++..+.+|...|.++
T Consensus       218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~  297 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL  297 (537)
T ss_pred             cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence            678999999999999998876     388999999999998878899999999999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      ...+   .++++|+.|.+|++||+.++.++..+. |...|+++..+  +.++++|+. +.|+|||+.+++.+.   .+.+
T Consensus       298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g  369 (537)
T KOG0274|consen  298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG  369 (537)
T ss_pred             EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence            8854   888999999999999999999999988 99999999998  889999985 459999999888655   7888


Q ss_pred             CCCCeEEEEEccCCCeEEEEE-----eeCCccCC-CcceeEeccCCccc------------CCCCeEEEecCCCCCCCCc
Q 004785          234 TRRSLRAVHFHPHAAPLLLTA-----EVNDLDSS-ESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPGL  295 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatg-----svwdl~s~-~~~~~l~t~sG~~~------------~p~~~V~l~d~~s~d~~~L  295 (730)
                      |...|+++.+... ..++.++     .+||++.. ++..++..+.+.+.            .....+.+||....+....
T Consensus       370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~  448 (537)
T KOG0274|consen  370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT  448 (537)
T ss_pred             CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence            9999999988765 4444433     28999988 77777666655542            1235688898888877776


Q ss_pred             cccc
Q 004785          296 AEEV  299 (730)
Q Consensus       296 ~~~~  299 (730)
                      ....
T Consensus       449 ~~~~  452 (537)
T KOG0274|consen  449 LEGR  452 (537)
T ss_pred             eccC
Confidence            6653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.4e-16  Score=178.10  Aligned_cols=217  Identities=19%  Similarity=0.203  Sum_probs=175.4

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCC
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRT  151 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~~~  151 (730)
                      ...|..|+.|..+|.|.+||....    .+.+ |...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...
T Consensus       226 s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qe  303 (484)
T KOG0305|consen  226 SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQE  303 (484)
T ss_pred             CCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccce
Confidence            457899999999999999998765    4666 99999999998  77899999999999999998776554 8899999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCC-CCEEEEEE---CCeEEEEEcCCCcccc
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHAS-GELLAVAS---GHKLYIWRYNMREETS  226 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPd-G~~LAsgS---dd~I~VWDl~t~~~~~  226 (730)
                      |..++|++ +++++++|+.|+.+.|||....+++.. .+|...|.+++|+|- ..+||+|+   |..|++||..++..+.
T Consensus       304 VCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~  382 (484)
T KOG0305|consen  304 VCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID  382 (484)
T ss_pred             eeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec
Confidence            99999999 999999999999999999976655554 579999999999995 45899987   3349999999887655


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF  306 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpi  306 (730)
                          .......|.+|.|++..+-|+++-+                  |   +...+.+|...+.   .......+...++
T Consensus       383 ----~vdtgsQVcsL~Wsk~~kEi~sthG------------------~---s~n~i~lw~~ps~---~~~~~l~gH~~RV  434 (484)
T KOG0305|consen  383 ----SVDTGSQVCSLIWSKKYKELLSTHG------------------Y---SENQITLWKYPSM---KLVAELLGHTSRV  434 (484)
T ss_pred             ----ccccCCceeeEEEcCCCCEEEEecC------------------C---CCCcEEEEecccc---ceeeeecCCccee
Confidence                4556789999999999988877643                  2   2234555554442   2333444567778


Q ss_pred             eeeeEecCCCEEEEEecCC
Q 004785          307 LRPSFVRDDERISLQHTEH  325 (730)
Q Consensus       307 l~p~FSpDg~rI~~~~~~~  325 (730)
                      +..+.||||..|+..-.+.
T Consensus       435 l~la~SPdg~~i~t~a~DE  453 (484)
T KOG0305|consen  435 LYLALSPDGETIVTGAADE  453 (484)
T ss_pred             EEEEECCCCCEEEEecccC
Confidence            8889999999999854444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.74  E-value=8.5e-18  Score=176.07  Aligned_cols=221  Identities=19%  Similarity=0.273  Sum_probs=170.1

Q ss_pred             CCCCCcceecccccccccCCCC-ccceeeeccCcceeec-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--
Q 004785           30 HRNSRLRNVFGLLAQREVAPRT-KHSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC--  101 (730)
Q Consensus        30 ~rsSk~r~If~~~~krEis~~~-~~~~k~~wd~~~~~~s-----~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~--  101 (730)
                      .++.+.+.+|...-..+.-..+ +..+.+.||.+...+.     +..+.+..-  -..+.|++|+.|.+|++||.+++  
T Consensus       192 c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLq--yd~rviisGSSDsTvrvWDv~tge~  269 (499)
T KOG0281|consen  192 CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQ--YDERVIVSGSSDSTVRVWDVNTGEP  269 (499)
T ss_pred             CCcccCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeee--ccceEEEecCCCceEEEEeccCCch
Confidence            3455566676665444433333 3345667776554332     222222222  35568999999999999999998  


Q ss_pred             --CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          102 --PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       102 --~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                        ++-+|...|..+.|+  ..++++++.|.++.+||+....   +.+.+.||...|+.+.|+   .+++++++.|.+|++
T Consensus       270 l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikv  344 (499)
T KOG0281|consen  270 LNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKV  344 (499)
T ss_pred             hhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEE
Confidence              477999999999998  5699999999999999997754   336678999999999995   479999999999999


Q ss_pred             EECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          177 WNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       177 WDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      |++.+++.+.++. |+..|.++.+  .|+++++|+. .+|++||+..+..++   .+.+|..-|+++.|.  .+.+++++
T Consensus       345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd--~krIVSGa  417 (499)
T KOG0281|consen  345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFD--NKRIVSGA  417 (499)
T ss_pred             Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeec--Cceeeecc
Confidence            9999999999874 8889988776  5899999985 559999999998765   789999999999995  55577755


Q ss_pred             e-----eCCccCCCc
Q 004785          255 E-----VNDLDSSES  264 (730)
Q Consensus       255 s-----vwdl~s~~~  264 (730)
                      -     +|++..+..
T Consensus       418 YDGkikvWdl~aald  432 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALD  432 (499)
T ss_pred             ccceEEEEecccccC
Confidence            3     777764443

>PTZ00420 coronin; Provisional

Probab=99.73  E-value=3.8e-16  Score=179.85  Aligned_cols=174  Identities=9%  Similarity=0.046  Sum_probs=130.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCCeEEEEEe
Q 004785           80 ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~------------~L~gH~~~Vt~lafSPDG~~-LaSgS~DgtVrVWDl~tg~~l~~l~  146 (730)
                      .+..|++++.|++|++||+.+.            .+.+|...|.+++|+|++.. |++++.|++|+|||+.+++.+..+.
T Consensus        86 ~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~  165 (568)
T PTZ00420         86 FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN  165 (568)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence            4678999999999999998643            25789999999999998875 5789999999999999998877776


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEE-----EEEcCCCCEEEEEE-CC----eEE
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIAS-----IAFHASGELLAVAS-GH----KLY  215 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~s-----VafSPdG~~LAsgS-dd----~I~  215 (730)
                       |...|.+++|+| ++.+|++++.|+.|+|||+++++.+..+. |.+.+..     ..|++++.+|++++ ++    .|+
T Consensus       166 -~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk  243 (568)
T PTZ00420        166 -MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK  243 (568)
T ss_pred             -cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence             567899999999 89999999999999999999998887764 6654432     34568989888876 33    499


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |||++..........+..+...+......++|.+++++.+
T Consensus       244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG  283 (568)
T PTZ00420        244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG  283 (568)
T ss_pred             EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence            9999864321101111122233333334445665555443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=1.2e-16  Score=178.55  Aligned_cols=178  Identities=19%  Similarity=0.265  Sum_probs=158.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      ....+.+|+.|+.|..+|+...     .+.+|...|..++|++|+++||+|++|+.|.|||......+..+..|.+.|..
T Consensus       269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA  348 (484)
T KOG0305|consen  269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA  348 (484)
T ss_pred             cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence            4667889999999999998764     37889999999999999999999999999999999888889999999999999


Q ss_pred             EEEccCCCCEEEEE--eCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCe
Q 004785          155 VRFHPLNPTIIASG--SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPR  229 (730)
Q Consensus       155 VafSP~dg~lLaSg--S~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~~~~  229 (730)
                      ++|+|....+||+|  +.|+.|++||..+++.+..+.....|.++.|++..+-|+++-   ++.|.||++.+.+..   .
T Consensus       349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---~  425 (484)
T KOG0305|consen  349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---A  425 (484)
T ss_pred             eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---e
Confidence            99999889999995  569999999999999999999999999999999998777665   344999999986654   4


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~  260 (730)
                      .+.+|...|..++++|||..+++++.+..++
T Consensus       426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  426 ELLGHTSRVLYLALSPDGETIVTGAADETLR  456 (484)
T ss_pred             eecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence            7889999999999999999988887644333

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.72  E-value=1e-15  Score=167.68  Aligned_cols=169  Identities=15%  Similarity=0.284  Sum_probs=143.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---cCCCCcEE
Q 004785           82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---GHRRTPWV  154 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~---gH~~~V~s  154 (730)
                      -+++++++|++|.+|+-.--    .+..|..-|+|+.|+|||.++++++.|++|.+||-.+|+.+..|.   +|++.|++
T Consensus       161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa  240 (603)
T KOG0318|consen  161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA  240 (603)
T ss_pred             eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence            47899999999999985422    467899999999999999999999999999999999999999997   89999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------------------------------------ecC
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--------------------------------------------RDF  190 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--------------------------------------------l~h  190 (730)
                      ++|+| |+..+++++.|.+++|||+.+++++.+                                            .+|
T Consensus       241 lsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH  319 (603)
T KOG0318|consen  241 LSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH  319 (603)
T ss_pred             EEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc
Confidence            99999 999999999999999999987655222                                            136


Q ss_pred             CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          191 YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       191 ~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ...|++++.+||+++|++|+ |+.|.-||..++...+  ..-..|...|.+++-+..+. +++.+
T Consensus       320 nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~--~~g~~h~nqI~~~~~~~~~~-~~t~g  381 (603)
T KOG0318|consen  320 NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR--LAGKGHTNQIKGMAASESGE-LFTIG  381 (603)
T ss_pred             ccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc--cccccccceEEEEeecCCCc-EEEEe
Confidence            67899999999999999999 5559999998887533  22367899999999887676 44444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.72  E-value=8.3e-17  Score=174.85  Aligned_cols=213  Identities=20%  Similarity=0.223  Sum_probs=173.8

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ...++..|+.|++..++.+||+...+      |..-.-..++++.|||.+..+++..||.|.|||+.+...++.|+||.+
T Consensus       473 L~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD  552 (705)
T KOG0639|consen  473 LLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  552 (705)
T ss_pred             ecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence            34578889999999999999987652      333334578899999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR  229 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~  229 (730)
                      .+.||.+++ ++..|-+|+.|++||-||+++++.+...++...|.++..+|.+.+|++|-.+. +.|-.....+.    .
T Consensus       553 GascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----y  627 (705)
T KOG0639|consen  553 GASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----Y  627 (705)
T ss_pred             CceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc----e
Confidence            999999999 99999999999999999999999988888999999999999999999998654 88777666543    3


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceee
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRP  309 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p  309 (730)
                      .+..|...|.++.|.+-|+++++++.++-+..|...      -|-      .|+-           .    ....+++.+
T Consensus       628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtP------yGa------siFq-----------s----kE~SsVlsC  680 (705)
T KOG0639|consen  628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP------YGA------SIFQ-----------S----KESSSVLSC  680 (705)
T ss_pred             eecccccEEEEEEecccCceeeecCchhhhhhccCc------ccc------ceee-----------c----cccCcceee
Confidence            477789999999999999999999985544433321      111      1110           0    123456778


Q ss_pred             eEecCCCEEEEE
Q 004785          310 SFVRDDERISLQ  321 (730)
Q Consensus       310 ~FSpDg~rI~~~  321 (730)
                      ..|.|+++|+-+
T Consensus       681 DIS~ddkyIVTG  692 (705)
T KOG0639|consen  681 DISFDDKYIVTG  692 (705)
T ss_pred             eeccCceEEEec
Confidence            889999999863

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.71  E-value=1.1e-16  Score=165.82  Aligned_cols=155  Identities=28%  Similarity=0.411  Sum_probs=132.1

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC------------C------eEEEEEecCCCCcEEEEEccCCC
Q 004785          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------------G------SCLKVLHGHRRTPWVVRFHPLNP  162 (730)
Q Consensus       101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------------g------~~l~~l~gH~~~V~sVafSP~dg  162 (730)
                      +.+..|+..+.+.+||+||.++|+|+.|..|+|.|++.            |      -.+++|..|...|+++.|+| ..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence            34778999999999999999999999999999999851            1      25678889999999999999 99


Q ss_pred             CEEEEEeCCCcEEEEECCCCeE---EEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCe
Q 004785          163 TIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~tg~~---i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      .+|++++.|++|+++|+.+...   .+.+....+|.++.|+|.|.+|++|.++- +++||+++.+.......-..|...|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999999999999999986433   33456778999999999999999999876 9999999987644333455789999


Q ss_pred             EEEEEccCCCeEEEEEee
Q 004785          239 RAVHFHPHAAPLLLTAEV  256 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsv  256 (730)
                      ++|.+++.|+..++++..
T Consensus       265 ~~V~Ys~t~~lYvTaSkD  282 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKD  282 (430)
T ss_pred             eEEEecCCccEEEEeccC
Confidence            999999999977666553

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.71  E-value=3.6e-16  Score=162.18  Aligned_cols=224  Identities=18%  Similarity=0.237  Sum_probs=174.4

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC----------------------CCCCCCCCCeEEEEECCCCCEEEEEe
Q 004785           69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKY----------------------CPLSPPPRSTIAAAFSPDGKTLASTH  126 (730)
Q Consensus        69 s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t----------------------~~L~gH~~~Vt~lafSPDG~~LaSgS  126 (730)
                      .......+.+.+|..+++|+.|.+|++.|.+.                      .+|-.|...|+++.|+|....|++|+
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s  191 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS  191 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence            33445556677899999999999999999862                      03557899999999999999999999


Q ss_pred             CCCeEEEEECCCCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCCCeEEEEE
Q 004785          127 GDHTVKIIDCQTGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAF  199 (730)
Q Consensus       127 ~DgtVrVWDl~tg~~l---~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~~V~sVaf  199 (730)
                      .|++|++||+..-...   +.|+ ...+|.++.|+| .+.+++.|....++++||+.+-++....    +|.+.|+++.+
T Consensus       192 rD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y  269 (430)
T KOG0640|consen  192 RDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY  269 (430)
T ss_pred             CCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence            9999999999764322   2333 446799999999 9999999999999999999999987663    48889999999


Q ss_pred             cCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEecc-
Q 004785          200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS-  271 (730)
Q Consensus       200 SPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~-  271 (730)
                      ++.|++.++++.++ |+|||--..+.+..  ....| ...|.+..|..+|+|+++++.     +|.+.++.....+.+. 
T Consensus       270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t--~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg  347 (430)
T KOG0640|consen  270 SSTGSLYVTASKDGAIKLWDGVSNRCVRT--IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG  347 (430)
T ss_pred             cCCccEEEEeccCCcEEeeccccHHHHHH--HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence            99999999999555 99999888876551  22234 567999999999999998775     8888887776555432 


Q ss_pred             -CCccc---------------CC---CCeEEEecCCCCCCCCcc
Q 004785          272 -PGYWR---------------YP---PPVICMAGAHSSSHPGLA  296 (730)
Q Consensus       272 -sG~~~---------------~p---~~~V~l~d~~s~d~~~L~  296 (730)
                       +|...               +|   ...++.|+..+.+...+.
T Consensus       348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~  391 (430)
T KOG0640|consen  348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL  391 (430)
T ss_pred             cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc
Confidence             23222               22   244666776666665544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.71  E-value=6.1e-16  Score=166.25  Aligned_cols=180  Identities=15%  Similarity=0.162  Sum_probs=159.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ....+.+|+.|+.+.++|....    .++||...|+.+.|+++...+++++.|..|+||.............|..+|+.+
T Consensus       230 s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~l  309 (506)
T KOG0289|consen  230 SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGL  309 (506)
T ss_pred             CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceee
Confidence            3578889999999999998876    588999999999999999999999999999999998888788889999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l  231 (730)
                      ..+| .+++|++++.|++..+.|++++..+....+.   -.+++.+|||||.+|.+|.-++ |+|||+.......   .+
T Consensus       310 s~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a---~F  385 (506)
T KOG0289|consen  310 SLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA---KF  385 (506)
T ss_pred             eecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc---cC
Confidence            9999 9999999999999999999999988776654   3589999999999999999554 9999999887544   67


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~  263 (730)
                      .+|...|..++|+.+|-||+++++     .||++...
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence            889999999999999999988775     55655433

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.71  E-value=2.5e-15  Score=158.87  Aligned_cols=242  Identities=14%  Similarity=0.122  Sum_probs=177.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ....+++|+.|..-.+|+..++    .+.+|+..|+++.||.||.+||||.-+|.|+||+..++.....+..--..+.-+
T Consensus        75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl  154 (399)
T KOG0296|consen   75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL  154 (399)
T ss_pred             CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence            6678889999999999999987    578999999999999999999999999999999999999888886556667789


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe----
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR----  229 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~----  229 (730)
                      .||| ...+|+.|+.||.|..|.+.++...+. .+|..++++=.|.|||+.++++.+++ |++|+..++.......    
T Consensus       155 ~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~  233 (399)
T KOG0296|consen  155 KWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG  233 (399)
T ss_pred             Eecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence            9999 999999999999999999998554444 56999999999999999999999655 9999999876422000    


Q ss_pred             --------------------------------------------EEecCCCCeEEEEEccCCCe--EEEEEe------eC
Q 004785          230 --------------------------------------------IVLRTRRSLRAVHFHPHAAP--LLLTAE------VN  257 (730)
Q Consensus       230 --------------------------------------------~l~~h~~~V~sVaFSPdG~~--Llatgs------vw  257 (730)
                                                                  ....+...+.+|.|.|....  |++++.      +|
T Consensus       234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy  313 (399)
T KOG0296|consen  234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY  313 (399)
T ss_pred             CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence                                                        00011112223333332211  222222      66


Q ss_pred             CccCCCcceeEeccC----------Cccc--CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCC
Q 004785          258 DLDSSESSLTLATSP----------GYWR--YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEH  325 (730)
Q Consensus       258 dl~s~~~~~~l~t~s----------G~~~--~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~  325 (730)
                      |+..+..+....--.          .|.-  -....+..|+..++.......+   ...+++-.+++||.++|+-...++
T Consensus       314 D~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G---H~~~Il~f~ls~~~~~vvT~s~D~  390 (399)
T KOG0296|consen  314 DLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG---HQMGILDFALSPQKRLVVTVSDDN  390 (399)
T ss_pred             ecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec---CchheeEEEEcCCCcEEEEecCCC
Confidence            665444332221111          1111  1246788899888877766665   666888899999999998744444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.1e-16  Score=175.52  Aligned_cols=176  Identities=16%  Similarity=0.200  Sum_probs=150.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      .+.-...-.+.+.++|-+|++||-+..     ++.||...|.+++|+| |.+.+|+++-|++|+||.+.+..+..++++|
T Consensus       103 iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH  182 (794)
T KOG0276|consen  103 IAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH  182 (794)
T ss_pred             eeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc
Confidence            333345668889999999999997753     6899999999999999 7889999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCC--CEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcc
Q 004785          149 RRTPWVVRFHPLNP--TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREE  224 (730)
Q Consensus       149 ~~~V~sVafSP~dg--~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~  224 (730)
                      ...|++|.+-+ ++  -+++||+.|.+|+|||.++.+|++++. |...|..+.|+|.=.++++|+. ++++||+..+-+.
T Consensus       183 ekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l  261 (794)
T KOG0276|consen  183 EKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL  261 (794)
T ss_pred             ccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence            99999999987 43  399999999999999999999999986 9999999999999999999994 5599999887765


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ..   .+.-.-..|++++-.+.++.++.+.
T Consensus       262 E~---tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  262 EK---TLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             hh---hhhcCCceEEEEeecCCCCeEEEec
Confidence            43   3344456788888888777655543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=6.7e-17  Score=183.07  Aligned_cols=185  Identities=19%  Similarity=0.229  Sum_probs=158.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC---C----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           79 DARRGLASWVEAESLHHLRPKY---C----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t---~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      -....|++++..|.|.+||+..   .    .+..|.+.+++++|++ ...+|++||.||+||+||++..+...++.+...
T Consensus        98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE  177 (839)
T KOG0269|consen   98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE  177 (839)
T ss_pred             chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence            3567899999999999999876   2    3679999999999999 678999999999999999999998889988889


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~  227 (730)
                      .|..|+|+|..++.|+++...|.+++||++... +... ..|.++|.++.|+|++.+||+|+.|+ |+|||+.+...  .
T Consensus       178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~  255 (839)
T KOG0269|consen  178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--K  255 (839)
T ss_pred             hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--c
Confidence            999999999888999999999999999999754 3333 46999999999999999999999555 99999987654  2


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe--------eCCccCCCcc
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESS  265 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs--------vwdl~s~~~~  265 (730)
                      +........+|..|.|-|+.++.++++.        +||++..-.+
T Consensus       256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            3445566789999999999998888765        8888855443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.70  E-value=1.1e-15  Score=159.20  Aligned_cols=173  Identities=18%  Similarity=0.188  Sum_probs=147.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ....+..+++|+.|.+|++||....    .+..|.+.|+++.|.++-.  .|++|++||.|.+|+....+++..+++|.+
T Consensus        49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~  128 (362)
T KOG0294|consen   49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG  128 (362)
T ss_pred             EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc
Confidence            3348899999999999999998764    5888999999999999765  899999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeE
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~  230 (730)
                      .|+.++.|| .+++.++.+.|+.+++||+-.|+.-..+........+.|+|.|.+++++..++|-||.+.+.....    
T Consensus       129 ~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~----  203 (362)
T KOG0294|consen  129 QVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR----  203 (362)
T ss_pred             ccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh----
Confidence            999999999 999999999999999999999988777776666677999999999999999999999998876533    


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .......+.++-|...+ +++++++
T Consensus       204 ~i~~~~r~l~~~~l~~~-~L~vG~d  227 (362)
T KOG0294|consen  204 EIENPKRILCATFLDGS-ELLVGGD  227 (362)
T ss_pred             hhhccccceeeeecCCc-eEEEecC
Confidence            22223456677776444 4555554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.70  E-value=2.4e-16  Score=174.63  Aligned_cols=259  Identities=16%  Similarity=0.158  Sum_probs=180.4

Q ss_pred             CCCCCcceecccccccccCCCCccceeeeccC--cceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CCCC--
Q 004785           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGE--TARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY-CPLS--  104 (730)
Q Consensus        30 ~rsSk~r~If~~~~krEis~~~~~~~k~~wd~--~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t-~~L~--  104 (730)
                      -..||||++-+....+.--+.+++........  +..+++    ...+       .+--.+..|.|-+|++.. ++|.  
T Consensus       551 G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan----~~rv-------AVPL~g~gG~iai~el~~PGrLPDg  619 (1012)
T KOG1445|consen  551 GQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCAN----NKRV-------AVPLAGSGGVIAIYELNEPGRLPDG  619 (1012)
T ss_pred             ccchheeeccCccccchhhhhhhhcccccCCCccCceeec----cceE-------EEEecCCCceEEEEEcCCCCCCCcc
Confidence            34578888888877776555555544433322  222222    1111       111234467888888764 2221  


Q ss_pred             -----CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCC
Q 004785          105 -----PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD  171 (730)
Q Consensus       105 -----gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D  171 (730)
                           -....|+++.|+| |...||.+++|+.|+||.+..+       ..-..+++|...|+++.|||.-.+.|++++.|
T Consensus       620 v~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd  699 (1012)
T KOG1445|consen  620 VMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD  699 (1012)
T ss_pred             cccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence                 2345699999999 8999999999999999998654       34567889999999999999889999999999


Q ss_pred             CcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec-CCCCeEEEEEccCCC
Q 004785          172 HEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR-TRRSLRAVHFHPHAA  248 (730)
Q Consensus       172 gtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~-h~~~V~sVaFSPdG~  248 (730)
                      .+|+|||+++++.... .+|.+.|.+++|||||+.+|+.+ |++|+||..+.++...  ..-.+ -...-..+.|.-||+
T Consensus       700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--~Eg~gpvgtRgARi~wacdgr  777 (1012)
T KOG1445|consen  700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--YEGKGPVGTRGARILWACDGR  777 (1012)
T ss_pred             ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc--ccCCCCccCcceeEEEEecCc
Confidence            9999999999877655 46999999999999999999999 5669999998876421  11111 112234677888999


Q ss_pred             eEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          249 PLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       249 ~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      ++++++-...                   ....+.+.+...-+..++.+...+..-..+.|.|.+|.+.+.+
T Consensus       778 ~viv~Gfdk~-------------------SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfl  830 (1012)
T KOG1445|consen  778 IVIVVGFDKS-------------------SERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFL  830 (1012)
T ss_pred             EEEEeccccc-------------------chhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEE
Confidence            8777652111                   1123444444444445566666666666778889999888876

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.70  E-value=9e-16  Score=165.94  Aligned_cols=183  Identities=18%  Similarity=0.251  Sum_probs=151.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe----
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS----  140 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--------------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~----  140 (730)
                      +...|++....+.|.+||....              +|.+|.+.-+++.|++ ....|++++.|++|.+||+....    
T Consensus       136 np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~  215 (422)
T KOG0264|consen  136 NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK  215 (422)
T ss_pred             CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc
Confidence            5567778889999999997531              4779999888999999 45589999999999999996532    


Q ss_pred             ---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC--CeEEEE-ecCCCCeEEEEEcCCC-CEEEEEE-CC
Q 004785          141 ---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST--AECIGS-RDFYRPIASIAFHASG-ELLAVAS-GH  212 (730)
Q Consensus       141 ---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t--g~~i~~-l~h~~~V~sVafSPdG-~~LAsgS-dd  212 (730)
                         ....+.+|...|..++|++.+.++|++++.|+.+.|||+++  .++... ..|...|++++|+|-+ .+||+|+ |+
T Consensus       216 ~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~  295 (422)
T KOG0264|consen  216 VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK  295 (422)
T ss_pred             cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence               34678999999999999999999999999999999999995  333333 3589999999999955 5888888 56


Q ss_pred             eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCc
Q 004785          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES  264 (730)
Q Consensus       213 ~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~  264 (730)
                      +|.+||+|+-..  .+..+.+|...|..|.|||+...++++++      +||+.....
T Consensus       296 tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~  351 (422)
T KOG0264|consen  296 TVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE  351 (422)
T ss_pred             cEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence            699999998776  56788999999999999999998888776      777764443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.69  E-value=8.5e-17  Score=179.40  Aligned_cols=191  Identities=19%  Similarity=0.262  Sum_probs=163.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEEe
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH  146 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~  146 (730)
                      ..++.|++++.|+.|++|+...-          .+..|..-|+++....+|+.|+++|.|.+|++|+...+  -++..+.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            35568999999999999997642          46789999999999999999999999999999999887  5778899


Q ss_pred             cCCCCcEEEEE-ccCCCCEEEEEeCCCcEEEEECCCCeE--EEEe----------cCCCCeEEEEEcCCCCEEEEEECCe
Q 004785          147 GHRRTPWVVRF-HPLNPTIIASGSLDHEVRLWNASTAEC--IGSR----------DFYRPIASIAFHASGELLAVASGHK  213 (730)
Q Consensus       147 gH~~~V~sVaf-SP~dg~lLaSgS~DgtVrLWDl~tg~~--i~~l----------~h~~~V~sVafSPdG~~LAsgSdd~  213 (730)
                      .|...|.|++. .+ +..+++||+.|+.|.+||+.++..  +..+          ++...|++++..+.|..++.|+-.+
T Consensus       115 ~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek  193 (735)
T KOG0308|consen  115 THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK  193 (735)
T ss_pred             cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence            99999999999 66 889999999999999999998733  2221          4667899999999998888888555


Q ss_pred             -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785          214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (730)
Q Consensus       214 -I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG  273 (730)
                       |++||.++.+.+.   .+.+|...|+.+..++||+.++++++     +|++....+..++..+..
T Consensus       194 ~lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  194 DLRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             ceEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC
Confidence             9999999998755   67799999999999999999998775     888887777766655433

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.69  E-value=1.7e-15  Score=156.90  Aligned_cols=165  Identities=22%  Similarity=0.281  Sum_probs=135.6

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      .+.+|++.|+.+.|+|+|..||+|+.|..|.+|++. .-+....+++|.+.|..+.|.+ +++.+++++.|.+|+.||.+
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence            578999999999999999999999999999999953 3345677899999999999999 99999999999999999999


Q ss_pred             CCeEEEEec-CCCCeEEEEEcCCCCE-EEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785          181 TAECIGSRD-FYRPIASIAFHASGEL-LAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (730)
Q Consensus       181 tg~~i~~l~-h~~~V~sVafSPdG~~-LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs--  255 (730)
                      +|++++.+. |.+-|+++.-+.-|.. +.++++++ ++|||+++.+...    .......++++.|..++..+++++=  
T Consensus       121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence            999998865 7788888885555654 45556555 9999999887644    4455678999999999987777653  


Q ss_pred             ---eCCccCCCcceeEecc
Q 004785          256 ---VNDLDSSESSLTLATS  271 (730)
Q Consensus       256 ---vwdl~s~~~~~~l~t~  271 (730)
                         +|+++..+....+.++
T Consensus       197 ~ikvWd~r~~d~~~~lsGh  215 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGH  215 (338)
T ss_pred             ceeeeccccCcceEEeecc
Confidence               6777766665555543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.69  E-value=4.6e-16  Score=164.87  Aligned_cols=182  Identities=18%  Similarity=0.306  Sum_probs=150.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC--------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ  137 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~--------------------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~  137 (730)
                      ......++|++.|.|++|++...                    ++.+|.+.=++++||| .-..|++|.--+.|++|...
T Consensus       163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~  242 (440)
T KOG0302|consen  163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS  242 (440)
T ss_pred             CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence            35677889999999999998521                    3568998899999999 33357788777899999998


Q ss_pred             CCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004785          138 TGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       138 tg~~l---~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~i~~l~h~~~V~sVafSPdG~~LAsgSd  211 (730)
                      +|.=.   ..|.+|+..|-.++|+|.....|+|||.|++|+|||++.+   .++....|.+.|+.|.|+-+-.+||+|+|
T Consensus       243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D  322 (440)
T KOG0302|consen  243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD  322 (440)
T ss_pred             cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence            86422   4567899999999999988899999999999999999988   45666679999999999998889999997


Q ss_pred             Ce-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcc
Q 004785          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (730)
Q Consensus       212 d~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~  260 (730)
                      ++ ++|||+++-+.......+..|..+|++|.|+|.....+++++      +||+.
T Consensus       323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            66 999999987766556678889999999999997765555443      66654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.68  E-value=2.3e-15  Score=161.91  Aligned_cols=173  Identities=19%  Similarity=0.313  Sum_probs=149.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC--CCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--RRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~~~V~  153 (730)
                      ....+++++.|..|++|.....    ....|..+|+.+..+|.|.+|+++++|++..+.|+++|..+......  .-.++
T Consensus       272 ~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t  351 (506)
T KOG0289|consen  272 DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT  351 (506)
T ss_pred             chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence            4567789999999999997654    36789999999999999999999999999999999999988766532  23478


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l  231 (730)
                      +.+||| |+.+|.+|..|+.|+|||+..+..+..|+ |.++|..++|+-+|.+|++++++. |++||+++.+...  ...
T Consensus       352 s~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~  428 (506)
T KOG0289|consen  352 SAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQ  428 (506)
T ss_pred             EeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--eee
Confidence            999999 99999999999999999999998887775 899999999999999999999877 9999999887533  233


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ......|.++.|.+.|.+|++.++
T Consensus       429 l~~~~~v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  429 LDEKKEVNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             ccccccceeEEEcCCCCeEEeecc
Confidence            334457999999999999988865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.2e-15  Score=154.31  Aligned_cols=232  Identities=14%  Similarity=0.154  Sum_probs=165.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCe--EEEEEecC
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVLHGH  148 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH  148 (730)
                      -+++|++++.|++|+++.....       +|.||.++|..++|..  -|.+||+++.||.|.||.-.+|+  ....+..|
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h  101 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH  101 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence            4789999999999999998753       4889999999999987  79999999999999999988874  23456789


Q ss_pred             CCCcEEEEEccCCC-CEEEEEeCCCcEEEEECCCC-eE-EE--EecCCCCeEEEEEcCC---C-----------CEEEEE
Q 004785          149 RRTPWVVRFHPLNP-TIIASGSLDHEVRLWNASTA-EC-IG--SRDFYRPIASIAFHAS---G-----------ELLAVA  209 (730)
Q Consensus       149 ~~~V~sVafSP~dg-~lLaSgS~DgtVrLWDl~tg-~~-i~--~l~h~~~V~sVafSPd---G-----------~~LAsg  209 (730)
                      ...|++|+|.|.+. -.|++++.||.|.|.++++. .- ..  ...|.-.|++++|.|.   |           +.|++|
T Consensus       102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg  181 (299)
T KOG1332|consen  102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG  181 (299)
T ss_pred             cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence            99999999999443 36788999999999998864 21 11  2358889999999996   5           568888


Q ss_pred             E-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCC---CeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEe
Q 004785          210 S-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA---APLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMA  285 (730)
Q Consensus       210 S-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG---~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~  285 (730)
                      + |+.|+||+...+.-.. ...+.+|.+.|+.++|.|.-   +..+++++.+                      ..+.+|
T Consensus       182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD----------------------g~viIw  238 (299)
T KOG1332|consen  182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD----------------------GTVIIW  238 (299)
T ss_pred             CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhccccCCCceeeEEecCC----------------------CcEEEE
Confidence            7 5559999998874332 33578999999999999965   2233343311                      112222


Q ss_pred             cCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeec
Q 004785          286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL  336 (730)
Q Consensus       286 d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~  336 (730)
                      ......+.--.+.....+-++|..+||.-|..+++.  ..+...+++...+
T Consensus       239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs--~GdNkvtlwke~~  287 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVS--GGDNKVTLWKENV  287 (299)
T ss_pred             EecCccCcccccccccCCcceEEEEEeccccEEEEe--cCCcEEEEEEeCC
Confidence            211111111111111234467789999999999983  3344445554433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.68  E-value=7.9e-16  Score=163.13  Aligned_cols=175  Identities=20%  Similarity=0.427  Sum_probs=135.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC---eEEEEEecCC
Q 004785           81 RRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHR  149 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~  149 (730)
                      ...|.+|.--+.|++|...++       .+.+|+..|-.+.||| ....|++||-|++|+|||++.+   .++. .+.|.
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~  302 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHN  302 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccC
Confidence            345677777778999988765       5789999999999999 5678999999999999999998   3333 38999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCC---CeEEEEec-CCCCeEEEEEcCCCC--EEEEEECCeEEEEEcCCCc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---AECIGSRD-FYRPIASIAFHASGE--LLAVASGHKLYIWRYNMRE  223 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t---g~~i~~l~-h~~~V~sVafSPdG~--~LAsgSdd~I~VWDl~t~~  223 (730)
                      +.|+.|.|+. ...+|++|+.||+++|||++.   ++++..+. |+.+|++|.|+|...  ++++|.|+.|.|||+....
T Consensus       303 sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  303 SDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             CceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            9999999998 666999999999999999986   45666665 899999999999544  4444556779999986432


Q ss_pred             c-------------ccCCeEEecC--CCCeEEEEEccCCCeEEEEEeeC
Q 004785          224 E-------------TSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAEVN  257 (730)
Q Consensus       224 ~-------------~~~~~~l~~h--~~~V~sVaFSPdG~~Llatgsvw  257 (730)
                      .             ...+..+.-|  ...+..|.|+++-.-++++....
T Consensus       382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d  430 (440)
T KOG0302|consen  382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID  430 (440)
T ss_pred             ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence            1             0112334444  45688899999877666665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.68  E-value=1.3e-14  Score=150.61  Aligned_cols=176  Identities=17%  Similarity=0.223  Sum_probs=134.0

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      ..+++...|+.|++||..+++    +..+ ..+.+++|+|||+.+ ++++.|+.|++||+.+++.+..+..+.. +..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            456788899999999988763    3333 347789999999876 5667789999999999988877766544 56789


Q ss_pred             EccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEEec
Q 004785          157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       157 fSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~~~~~l~~  233 (730)
                      |+| +++.+ +++..|+.|++||+.+++.+..+.....+.+++|+|+|+++++++.+.  +++||.++.+...   . ..
T Consensus        80 ~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~---~-~~  154 (300)
T TIGR03866        80 LHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD---N-VL  154 (300)
T ss_pred             ECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE---E-EE
Confidence            999 66655 555678999999999988887777666678999999999999888543  7888987765432   1 12


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe------eCCccCCCc
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES  264 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~  264 (730)
                      ....+..+.|+|+|+++++++.      +|++..++.
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV  191 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence            2345678999999998866542      777766544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.68  E-value=4e-15  Score=151.76  Aligned_cols=178  Identities=17%  Similarity=0.257  Sum_probs=152.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      -.|..|++++.|+++.+|+++..      ...+|.+.|-.++|+| ...+|++++.|.+|++||++.++++..+....+.
T Consensus        30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en  109 (313)
T KOG1407|consen   30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN  109 (313)
T ss_pred             ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc
Confidence            36789999999999999998754      3568999999999999 6779999999999999999999999888766555


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~  230 (730)
                      + .+.|+| ++.+++.++.|..|.+.|.++.+.....+....++.++|+-++.+++...+ +.|.|..+..-+.+.   .
T Consensus       110 i-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~---s  184 (313)
T KOG1407|consen  110 I-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQ---S  184 (313)
T ss_pred             e-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccc---c
Confidence            5 489999 999999999999999999999999888888889999999977776555554 679999888666544   7


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s  261 (730)
                      +..|.....++.|+|+|+++++++.     +||++.
T Consensus       185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             cccCCcceEEEEECCCCceEeeccccceeeccChhH
Confidence            8889999999999999999887654     666663

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=7.6e-16  Score=173.97  Aligned_cols=181  Identities=19%  Similarity=0.279  Sum_probs=158.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC--------C-C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC--------P-L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS  140 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~--------~-L-------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~  140 (730)
                      ...++..+++++.|++|++||.+.-        + +       ..-...|.|+.+||||++|+.+--|.+|+||-+.+-+
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK  541 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK  541 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee
Confidence            3457788999999999999997531        1 1       1335679999999999999999999999999999999


Q ss_pred             EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEE
Q 004785          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWR  218 (730)
Q Consensus       141 ~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWD  218 (730)
                      ....+.||.-+|.|+..+| ++++++|||.|.+|++|-+.-|.|-+. +.|.+.|.++.|-|+...+++++ |+.|+-||
T Consensus       542 FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  542 FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD  620 (888)
T ss_pred             eeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence            9999999999999999999 999999999999999999999999877 57999999999999888888888 55599999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccC
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS  261 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s  261 (730)
                      ...-+.+.   .+.+|...|++++.+|+|.++++++.+..++.
T Consensus       621 g~kFe~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRl  660 (888)
T KOG0306|consen  621 GEKFEEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRL  660 (888)
T ss_pred             hhhhhhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEe
Confidence            88877654   88999999999999999999888877555553

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.67  E-value=3.7e-15  Score=152.37  Aligned_cols=153  Identities=16%  Similarity=0.302  Sum_probs=136.9

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t  181 (730)
                      .+.||.++++.+.++.+|.+|++++.|.++.||-..+|+.+-.+.||++.|+++..+- +.+.+++|+.|.+++|||+.+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCC
Confidence            3679999999999999999999999999999999999999999999999999999998 899999999999999999999


Q ss_pred             CeEEEEecCCCCeEEEEEcCCCCEEEEEECCe------EEEEEcCCCc----cccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          182 AECIGSRDFYRPIASIAFHASGELLAVASGHK------LYIWRYNMRE----ETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       182 g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~------I~VWDl~t~~----~~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      |+++..+..+..|..+.|+++|++++...|+.      |.++|++...    ...+...+..+...++.+-|+|-+++|+
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            99999999999999999999999888887542      9999998543    1122345666788999999999999888


Q ss_pred             EEEe
Q 004785          252 LTAE  255 (730)
Q Consensus       252 atgs  255 (730)
                      ++.+
T Consensus       164 ~Ghe  167 (327)
T KOG0643|consen  164 AGHE  167 (327)
T ss_pred             EecC
Confidence            7665

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=9.1e-17  Score=180.80  Aligned_cols=173  Identities=21%  Similarity=0.347  Sum_probs=153.7

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ....+.+++|+.|.++.+|....-    .|.+|...|.++.|+++..+|+.|+.||+|++||++.++.+++|.+|...+.
T Consensus        37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~  116 (825)
T KOG0267|consen   37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT  116 (825)
T ss_pred             eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc
Confidence            456688999999999999987532    4789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l  231 (730)
                      .+.|+| -+.++++|+.|..+++||++...|...++ |...+..+.|+|+|++++.++++ .++|||+..++...   .+
T Consensus       117 sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~---ef  192 (825)
T KOG0267|consen  117 SVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK---EF  192 (825)
T ss_pred             eeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc---cc
Confidence            999999 88999999999999999999888888876 77889999999999999999975 49999999888654   56


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..|...+.++.|+|..- ++++++
T Consensus       193 ~~~e~~v~sle~hp~e~-Lla~Gs  215 (825)
T KOG0267|consen  193 KSHEGKVQSLEFHPLEV-LLAPGS  215 (825)
T ss_pred             ccccccccccccCchhh-hhccCC
Confidence            77999999999999865 555444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=2.8e-15  Score=160.24  Aligned_cols=236  Identities=13%  Similarity=0.122  Sum_probs=174.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GH  148 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH  148 (730)
                      .+.+|+.|+++++|.+..+|+....       ++.+|..+|.-+.||||.++|++|+.|..+++||+.+|.....+. +|
T Consensus       232 FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~  311 (519)
T KOG0293|consen  232 FSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL  311 (519)
T ss_pred             EcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc
Confidence            4568999999999999999987542       578999999999999999999999999999999999999887774 45


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      ...+.+.+|.| |+..+++|+.|++|..||+.....-.--+ ....|.+++.++||+++++.+ |.+|++++..+.....
T Consensus       312 ~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~  390 (519)
T KOG0293|consen  312 GFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG  390 (519)
T ss_pred             CCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc
Confidence            68899999999 99999999999999999997543222212 235699999999999887776 5559999988775532


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEecc-----------CCcc-cC-----CCCeEEE
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS-----------PGYW-RY-----PPPVICM  284 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~-----------sG~~-~~-----p~~~V~l  284 (730)
                          +......|+++..|.||+++++.-.     .||+....-...+.++           .|+- .+     -...|++
T Consensus       391 ----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI  466 (519)
T KOG0293|consen  391 ----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI  466 (519)
T ss_pred             ----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE
Confidence                4455678999999999998877543     8888744433332221           1111 01     1356777


Q ss_pred             ecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          285 AGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       285 ~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      |...++......   ++.+--+-.++|+|.+.++.+
T Consensus       467 Whr~sgkll~~L---sGHs~~vNcVswNP~~p~m~A  499 (519)
T KOG0293|consen  467 WHRISGKLLAVL---SGHSKTVNCVSWNPADPEMFA  499 (519)
T ss_pred             EEccCCceeEee---cCCcceeeEEecCCCCHHHhh
Confidence            775555443333   334434446677776666554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.66  E-value=4.2e-16  Score=157.93  Aligned_cols=211  Identities=18%  Similarity=0.192  Sum_probs=167.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~-L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~~~V~sV  155 (730)
                      +-.+.++++.|-+-++||+-++. |  -.|+.-|.+++|+.|.++|++|+.+..++|||++..+ +.+.+.+|.+.|..+
T Consensus        70 na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v  149 (334)
T KOG0278|consen   70 NATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTV  149 (334)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence            33456688889999999998873 3  3688899999999999999999999999999997753 567889999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCC
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                      -|.- ..+.|++...|++||+||.++++.++.+..+..|+++..++||++|.++....|.+||..+-+.+.    .....
T Consensus       150 ~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~k~P  224 (334)
T KOG0278|consen  150 LWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SYKMP  224 (334)
T ss_pred             EEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----eccCc
Confidence            9998 778888889999999999999999999999999999999999999999888889999998876543    34456


Q ss_pred             CCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCC
Q 004785          236 RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDD  315 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg  315 (730)
                      ..|.+...+|+...+++.++..-+                       +-.|-.+++++...  ..+...|+..+.|+|||
T Consensus       225 ~nV~SASL~P~k~~fVaGged~~~-----------------------~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdG  279 (334)
T KOG0278|consen  225 CNVESASLHPKKEFFVAGGEDFKV-----------------------YKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDG  279 (334)
T ss_pred             cccccccccCCCceEEecCcceEE-----------------------EEEeccCCceeeec--ccCCCCceEEEEECCCC
Confidence            788999999999877776652111                       11111222222221  22345577788999999


Q ss_pred             CEEEE
Q 004785          316 ERISL  320 (730)
Q Consensus       316 ~rI~~  320 (730)
                      ..-+.
T Consensus       280 E~yAs  284 (334)
T KOG0278|consen  280 ELYAS  284 (334)
T ss_pred             ceeec
Confidence            87765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.66  E-value=4e-15  Score=152.18  Aligned_cols=187  Identities=14%  Similarity=0.095  Sum_probs=153.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      ..|..|+++++|.+..+|=...+    ++.||.+.|+|++.+-+.++|++|+.|.++++||+++|+++..++- ...|..
T Consensus        20 ~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~   98 (327)
T KOG0643|consen   20 REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKR   98 (327)
T ss_pred             CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEE
Confidence            57889999999999999987554    6889999999999999999999999999999999999999999974 467999


Q ss_pred             EEEccCCCCEEEEEeC-----CCcEEEEECCC-------CeEEEE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcC
Q 004785          155 VRFHPLNPTIIASGSL-----DHEVRLWNAST-------AECIGS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYN  220 (730)
Q Consensus       155 VafSP~dg~lLaSgS~-----DgtVrLWDl~t-------g~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~  220 (730)
                      +.|++ ++++++....     .+.|.++|++.       .++... ..+...++.+-|.|.+++|++|.++ .|.+||++
T Consensus        99 ~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~  177 (327)
T KOG0643|consen   99 VDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR  177 (327)
T ss_pred             Eeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcc
Confidence            99999 8887776543     46799999983       343444 3467899999999999999999854 59999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~  269 (730)
                      ++.+..  .....|...|+.+.|++|..++++++.     +||+.+.....++.
T Consensus       178 ~g~~~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  178 TGKELV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             cCceee--echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            986533  234568889999999999998888665     66766555444443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=2.1e-15  Score=163.50  Aligned_cols=201  Identities=17%  Similarity=0.145  Sum_probs=165.4

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---------CCe
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------TGS  140 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~---------tg~  140 (730)
                      ..+....|..|+.+...+.|++|.+.++.    +.+|-..|+|+.|+-||.+|++||+||.|.+|++.         +-+
T Consensus        86 al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   86 ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             eeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            34445677788888799999999999994    57999999999999999999999999999999872         346


Q ss_pred             EEEEEecCCCCcEEEEEccC-CCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEE
Q 004785          141 CLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWR  218 (730)
Q Consensus       141 ~l~~l~gH~~~V~sVafSP~-dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWD  218 (730)
                      ++..|..|+-+|+.+...+. -...++|+|.|.++++||+..|..+..+.....+.+++.+|-++.+++|+. +.|.+.+
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence            78899999999999998872 245899999999999999999999999999999999999999999999985 5588877


Q ss_pred             cCCCcc-------------ccCCeEEecCCC--CeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc
Q 004785          219 YNMREE-------------TSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY  274 (730)
Q Consensus       219 l~t~~~-------------~~~~~~l~~h~~--~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~  274 (730)
                      +.+...             ......+.+|..  .|++++.+-||..|+++..     +||+.+.++.+++.+..|-
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp  321 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP  321 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc
Confidence            754331             112345667877  9999999999996666554     8888877777777654444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.66  E-value=2.8e-15  Score=152.94  Aligned_cols=215  Identities=17%  Similarity=0.255  Sum_probs=164.8

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (730)
Q Consensus       101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (730)
                      ..+.+|...|.+++|+-+|..|++|+.|+++++|+++..+.++  .+++|.+.|-.+.|+|...+++++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            3567899999999999999999999999999999998876554  45789999999999998999999999999999999


Q ss_pred             CCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785          179 ASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (730)
Q Consensus       179 l~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvw  257 (730)
                      ++.++++..+...+.-.-++|+|+|+++++++ ++.|.+.|.++.+...    .......+..+.|+-++..++.+.+..
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence            99999999998888888899999999999999 5569999998876533    333445678889998887766665433


Q ss_pred             CccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecC
Q 004785          258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLR  337 (730)
Q Consensus       258 dl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~  337 (730)
                      .+..             ..||  .+        +  . .......+..++...|+|||++++++                
T Consensus       170 ~v~I-------------Lsyp--sL--------k--p-v~si~AH~snCicI~f~p~GryfA~G----------------  207 (313)
T KOG1407|consen  170 CVEI-------------LSYP--SL--------K--P-VQSIKAHPSNCICIEFDPDGRYFATG----------------  207 (313)
T ss_pred             eEEE-------------Eecc--cc--------c--c-ccccccCCcceEEEEECCCCceEeec----------------
Confidence            2220             0111  00        0  0 11112234567788999999999972                


Q ss_pred             CCcceeeecccCCCCCccceeccCC
Q 004785          338 SSSSVRLLTYSTPSGQYELVLSPIA  362 (730)
Q Consensus       338 ss~~~~l~~~~~~~~q~~~~v~p~~  362 (730)
                       ++-.....|+....=+..+++-+|
T Consensus       208 -sADAlvSLWD~~ELiC~R~isRld  231 (313)
T KOG1407|consen  208 -SADALVSLWDVDELICERCISRLD  231 (313)
T ss_pred             -cccceeeccChhHhhhheeecccc
Confidence             222344567777777888887776

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=3e-15  Score=163.06  Aligned_cols=170  Identities=14%  Similarity=0.180  Sum_probs=144.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCc
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTP  152 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V  152 (730)
                      .++..+++|++|+.+++||+.+.    .+.+|++.|.|.+|+| ++.+++|||.||+|++||+++. ..+..+ .|..+|
T Consensus       121 ~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pV  199 (487)
T KOG0310|consen  121 QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPV  199 (487)
T ss_pred             cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCce
Confidence            56788999999999999999876    5789999999999999 6779999999999999999887 555666 599999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR  229 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~  229 (730)
                      ..+.+-| .+.++++++.. .|++||+.+|. .+... .|...|+|+.+..++..|++++ |+.|++||+.+.+.+.   
T Consensus       200 e~vl~lp-sgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~---  274 (487)
T KOG0310|consen  200 ESVLALP-SGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH---  274 (487)
T ss_pred             eeEEEcC-CCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE---
Confidence            9999999 88999998765 69999999654 44444 4999999999999999999999 7779999977666433   


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       ...-.++|.+++.+|++..++++.+
T Consensus       275 -s~~~~~pvLsiavs~dd~t~viGms  299 (487)
T KOG0310|consen  275 -SWKYPGPVLSIAVSPDDQTVVIGMS  299 (487)
T ss_pred             -eeecccceeeEEecCCCceEEEecc
Confidence             3445789999999999998887654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.66  E-value=4.6e-15  Score=170.23  Aligned_cols=182  Identities=20%  Similarity=0.285  Sum_probs=155.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      ..+..|++|+.|+++++||..++    .+.+|...|.++...  +..+++|+.|.+|++|++.++.++..+.+|.+.|.+
T Consensus       259 ~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~  336 (537)
T KOG0274|consen  259 SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC  336 (537)
T ss_pred             cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence            36889999999999999998886    588999999999885  567888999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC-ccccCCeEE
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR-EETSSPRIV  231 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~-~~~~~~~~l  231 (730)
                      +..+   +.++++|+.|++|++||+.++++++.+ +|...|.++.+... ..+++|+ |..|++||+++. +...   .+
T Consensus       337 v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl  409 (537)
T KOG0274|consen  337 VQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TL  409 (537)
T ss_pred             EEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hh
Confidence            9995   799999999999999999999999986 49999999988766 8889998 555999999998 5544   67


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEE-----eeCCccCCCcceeEecc
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSESSLTLATS  271 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatg-----svwdl~s~~~~~~l~t~  271 (730)
                      .+|..-|..+.+  .+++|+...     .+||....+....+.+.
T Consensus       410 ~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  410 QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR  452 (537)
T ss_pred             cCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC
Confidence            778887766655  456555543     38888888887777764

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.65  E-value=3.6e-16  Score=167.22  Aligned_cols=176  Identities=15%  Similarity=0.189  Sum_probs=147.4

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      ..+...|++++.|..|++|+....      .|.|-.+.|+.++|.++++.++++++|+.+++|++.+.+...+|.||++.
T Consensus       184 l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk  263 (459)
T KOG0288|consen  184 LRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK  263 (459)
T ss_pred             ccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc
Confidence            346678999999999999998654      46788889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~  230 (730)
                      |+++.|.- +...+++|+.|.+|++||+.+..|.+..-....+..|..+  +..+++|- |.+|++||.+......    
T Consensus       264 Vt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~----  336 (459)
T KOG0288|consen  264 VTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR----  336 (459)
T ss_pred             eeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee----
Confidence            99999988 5556999999999999999999998887777777777765  33444444 5569999999987644    


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~  260 (730)
                      .....+.|+++..+++|..+++++..+.+.
T Consensus       337 sv~~gg~vtSl~ls~~g~~lLsssRDdtl~  366 (459)
T KOG0288|consen  337 SVPLGGRVTSLDLSMDGLELLSSSRDDTLK  366 (459)
T ss_pred             EeecCcceeeEeeccCCeEEeeecCCCcee
Confidence            334445999999999999998887655444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.65  E-value=1.3e-16  Score=165.88  Aligned_cols=163  Identities=19%  Similarity=0.273  Sum_probs=143.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--------cCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--------GHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--------gH~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      +.+..+.|..|||||++|++|+.||.|.+||..+|+..+.++        -+...|.|+.|+. +...+++|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence            455668899999999999999999999999999998665443        4678899999999 9999999999999999


Q ss_pred             EECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          177 WNASTAECIGSRD--FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       177 WDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      |.+.+|.|+..++  |...|+++.|+.|+..+.+++ |..++|--+..++.+.   .+.+|...|+...|++||.+++++
T Consensus       290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCCCCeEEEe
Confidence            9999999999876  889999999999999988888 5559999999998765   688999999999999999999886


Q ss_pred             Ee-----eCCccCCCcceeEecc
Q 004785          254 AE-----VNDLDSSESSLTLATS  271 (730)
Q Consensus       254 gs-----vwdl~s~~~~~~l~t~  271 (730)
                      ++     +|+..+.++..++...
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~  389 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPL  389 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCC
Confidence            65     8888888887666543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=8.1e-16  Score=156.29  Aligned_cols=174  Identities=18%  Similarity=0.232  Sum_probs=143.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      .+..+++.+-|++|++|+....    ++.+|...|....|+| .+++++++|.|+++++||++.......+..|...|.+
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~  195 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC  195 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence            4566677799999999998754    6899999999999999 7899999999999999999874444458999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEE-ecCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeE
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGS-RDFYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRI  230 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~-l~h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~t~~~~~~~~~  230 (730)
                      +.|+..+.++++||+.|+.|+.||+++- .++.. .+|.-.|..++|||... +|++++.+. ++|||.......  ...
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~--~e~  273 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA--IET  273 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh--hhh
Confidence            9999889999999999999999999974 34444 35888999999999764 888888665 999999866542  235


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...|..-|..+.||+.....+++++
T Consensus       274 ~~~HtEFv~g~Dws~~~~~~vAs~g  298 (311)
T KOG0277|consen  274 VDHHTEFVCGLDWSLFDPGQVASTG  298 (311)
T ss_pred             hhccceEEeccccccccCceeeecc
Confidence            6678899999999997655555543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.65  E-value=5e-14  Score=146.21  Aligned_cols=213  Identities=15%  Similarity=0.201  Sum_probs=152.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-CC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           79 DARRGLASWVEAESLHHLRPKY-CP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t-~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      .....++.++-|++||+|+++. +.     ...|.++|.+++|+.||..+++|+-|+.+++||+.+++ +..+..|.++|
T Consensus        38 ~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pv  116 (347)
T KOG0647|consen   38 QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPV  116 (347)
T ss_pred             ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccce
Confidence            3556777899999999999876 33     45799999999999999999999999999999999995 67778899999


Q ss_pred             EEEEEccCCCC--EEEEEeCCCcEEEEECCCCeEEEEecCC---------------------------------------
Q 004785          153 WVVRFHPLNPT--IIASGSLDHEVRLWNASTAECIGSRDFY---------------------------------------  191 (730)
Q Consensus       153 ~sVafSP~dg~--lLaSgS~DgtVrLWDl~tg~~i~~l~h~---------------------------------------  191 (730)
                      ..+.|-+ ...  .|++||.|++|+.||.+...++..+...                                       
T Consensus       117 kt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~S  195 (347)
T KOG0647|consen  117 KTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIES  195 (347)
T ss_pred             eEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcC
Confidence            9999987 555  8999999999999999976654443222                                       


Q ss_pred             ---CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCC---------CeEEEEEccCCCeEEEEEeeCC
Q 004785          192 ---RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR---------SLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       192 ---~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~---------~V~sVaFSPdG~~Llatgsvwd  258 (730)
                         -.+.+|+...|.+..+.|+ .+++.|..++.+.. ...+.+.-|+.         .|.+|+|+|.-..|++.|++. 
T Consensus       196 pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG-  273 (347)
T KOG0647|consen  196 PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG-  273 (347)
T ss_pred             cccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc-
Confidence               2356777777777667777 56676666665433 12334444432         467889999877777777532 


Q ss_pred             ccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       259 l~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                                            ...|||-.....  |. .....+.|+-..+|..+|+..+.
T Consensus       274 ----------------------tf~FWDkdar~k--Lk-~s~~~~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  274 ----------------------TFSFWDKDARTK--LK-TSETHPQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             ----------------------eEEEecchhhhh--hh-ccCcCCCccceeEecCCCCEEEE
Confidence                                  344555222211  11 11223446667889999887654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.65  E-value=1.5e-15  Score=154.02  Aligned_cols=179  Identities=17%  Similarity=0.205  Sum_probs=153.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (730)
                      ....+...+...|.+|+.++.+|++|++..     .+.+|++.|..+.|....+.|++.++|++||+||.++|+.++.+.
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence            344555667889999999999999998764     478999999999999988899999999999999999999999886


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~  225 (730)
                       -...|+++.+++ +++++.. ...+.|++||..+-..++.+.....|.+.+++|+..++++|+.+. ++.||+.+++++
T Consensus       183 -~~s~VtSlEvs~-dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi  259 (334)
T KOG0278|consen  183 -FNSPVTSLEVSQ-DGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI  259 (334)
T ss_pred             -cCCCCcceeecc-CCCEEEE-ecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCcee
Confidence             446799999999 7776654 556789999999999999999999999999999998888888665 999999999876


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..  ...+|.++|.+|.|+|||...++.++
T Consensus       260 ~~--~nkgh~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  260 GS--YNKGHFGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             ee--cccCCCCceEEEEECCCCceeeccCC
Confidence            51  24789999999999999996655554

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.64  E-value=1.3e-14  Score=157.09  Aligned_cols=243  Identities=17%  Similarity=0.177  Sum_probs=182.6

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-----------C-----------CCCCCCeEEEEECCCCCEEEEEeCCC
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP-----------L-----------SPPPRSTIAAAFSPDGKTLASTHGDH  129 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-----------L-----------~gH~~~Vt~lafSPDG~~LaSgS~Dg  129 (730)
                      .+.++..+...++++++.+++|.-|+..+++           +           ++|...+.+++.|+||++|++|+.|.
T Consensus       145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~  224 (479)
T KOG0299|consen  145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR  224 (479)
T ss_pred             ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence            4456667788999999999999999987642           1           26888899999999999999999999


Q ss_pred             eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEE
Q 004785          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAV  208 (730)
Q Consensus       130 tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAs  208 (730)
                      .|.|||+++.+.++.+++|.+.|.+++|-. +.+.+++++.|++|++|++.....+.+ ++|.+.|.+|.-..-++.+-+
T Consensus       225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV  303 (479)
T KOG0299|consen  225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV  303 (479)
T ss_pred             eEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEe
Confidence            999999999999999999999999999988 889999999999999999998776665 689999999998888888888


Q ss_pred             EE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccC-----
Q 004785          209 AS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY-----  277 (730)
Q Consensus       209 gS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~-----  277 (730)
                      |+ |.++++|++.....    ..+.++...+-+++|-.+.. +++++.     +|++..-....+.....|....     
T Consensus       304 GgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~  378 (479)
T KOG0299|consen  304 GGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN  378 (479)
T ss_pred             ccccceeEEEeccccce----eeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence            86 55699999944432    45778888999999987765 555443     6665544433333222222111     


Q ss_pred             ---------------------CCCeEEEecCCCCCC-CCcccccCCCCCCce--eeeEecCCCEEEEEec
Q 004785          278 ---------------------PPPVICMAGAHSSSH-PGLAEEVPLITPPFL--RPSFVRDDERISLQHT  323 (730)
Q Consensus       278 ---------------------p~~~V~l~d~~s~d~-~~L~~~~~~~slpil--~p~FSpDg~rI~~~~~  323 (730)
                                           -...+.+|.+..+-. ..+...   .++.-+  ..+|+.+|++|++..+
T Consensus       379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~---ls~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS---LSLVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             cccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee---cccccEEEEEEEccCCCEEEEecc
Confidence                                 013455665444321 222222   233333  6899999999998544

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=1.5e-15  Score=172.28  Aligned_cols=173  Identities=18%  Similarity=0.276  Sum_probs=146.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V~  153 (730)
                      .-..|++|+.|++|++||++..    ++.+....|.++.|+| .+..|+++.+.|.+++||++.. ++...+..|.++|.
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVL  224 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceE
Confidence            4568999999999999999754    5678889999999999 7889999999999999999875 45678899999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCe--EEEEecCCCCeEEEEEcCCCC-EEEEEE--CC-eEEEEEcCCCccccC
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAE--CIGSRDFYRPIASIAFHASGE-LLAVAS--GH-KLYIWRYNMREETSS  227 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~i~~l~h~~~V~sVafSPdG~-~LAsgS--dd-~I~VWDl~t~~~~~~  227 (730)
                      ++.|+| +..+||||+.|+.|+|||..+++  .+..+....++..+.|-|+.. .||+++  ++ .|+|||++..-.  +
T Consensus       225 c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P  301 (839)
T KOG0269|consen  225 CLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--P  301 (839)
T ss_pred             EEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--c
Confidence            999999 99999999999999999998754  345566778999999999876 677776  34 499999987765  3


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...+..|...++.++|......++.+++
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~s  329 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCS  329 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeec
Confidence            4678889999999999875555555554

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.64  E-value=5.9e-15  Score=156.72  Aligned_cols=181  Identities=17%  Similarity=0.240  Sum_probs=147.9

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCC-----------------------C------CCCCCCCCeEEEEECCCCCEEEE
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKY-----------------------C------PLSPPPRSTIAAAFSPDGKTLAS  124 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t-----------------------~------~L~gH~~~Vt~lafSPDG~~LaS  124 (730)
                      .+.....+..+++++-|.+|++|+...                       +      .+.||...|.++.|++ ...+++
T Consensus       198 sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS  276 (423)
T KOG0313|consen  198 SVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYS  276 (423)
T ss_pred             EEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEe
Confidence            344456888999999999999999321                       0      2679999999999997 778999


Q ss_pred             EeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe--EE--EEecCCCCeEEEEEc
Q 004785          125 THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE--CI--GSRDFYRPIASIAFH  200 (730)
Q Consensus       125 gS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~i--~~l~h~~~V~sVafS  200 (730)
                      ++.|++|++||+.++..+..+.+. ..++++..+| ..+++++|+.|..|++||-+++.  .+  ...+|...|.++.|+
T Consensus       277 ~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws  354 (423)
T KOG0313|consen  277 VSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS  354 (423)
T ss_pred             ecccceEEEEEeecccceeeeecC-cceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence            999999999999999988888754 5699999999 99999999999999999999863  22  235799999999999


Q ss_pred             CCCC-EEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785          201 ASGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (730)
Q Consensus       201 PdG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~  260 (730)
                      |... +|++++ |+.+++||++..+.  ....+.+|.+.|.++.|+..+ .+++++.+..++
T Consensus       355 p~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~  413 (423)
T KOG0313|consen  355 PTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLR  413 (423)
T ss_pred             CCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCCc-eEEeccCcceEE
Confidence            9876 566666 66699999998874  345788999999999998544 466655444444

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.3e-14  Score=151.34  Aligned_cols=187  Identities=17%  Similarity=0.181  Sum_probs=137.3

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCCC--------CCCeEEEEECCCCCEEE-EEeCCCeEEEEECCC---C
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPP--------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQT---G  139 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~gH--------~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~t---g  139 (730)
                      ..-++.+.+|+.|++.+.|++|++|+.+.-..+.|        -+.-+.+.|+||.+-++ +.....++++|.+..   |
T Consensus        89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG  168 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG  168 (420)
T ss_pred             eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence            44555667899999999999999999875433333        22457889999877544 445566888887632   2


Q ss_pred             eEEE---------EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 004785          140 SCLK---------VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA  209 (730)
Q Consensus       140 ~~l~---------~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsg  209 (730)
                      ....         .-+.|.-.|..+-... ++.++++++.|.+|.|||++ |+.+..++ .....+..+.||+|++|+++
T Consensus       169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~  246 (420)
T KOG2096|consen  169 SGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVS  246 (420)
T ss_pred             CCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEe
Confidence            2111         1134555666777776 88999999999999999998 88888776 44566788999999999988


Q ss_pred             E-CCeEEEEEcCC---C--ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCcc
Q 004785          210 S-GHKLYIWRYNM---R--EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLD  260 (730)
Q Consensus       210 S-dd~I~VWDl~t---~--~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~  260 (730)
                      + .-.|+||..--   +  ++......+.+|...|..++|+++.+.+++.+.     +||.+
T Consensus       247 gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  247 GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            7 55599998732   2  223345678899999999999999999888776     56544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.64  E-value=5e-15  Score=149.17  Aligned_cols=142  Identities=16%  Similarity=0.276  Sum_probs=127.7

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t  181 (730)
                      .+..|.++|.++.|+-||++.++++.|++|++|+...|.+++++.+|...|..++.+. +...|++|+.|..|.+||+.+
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence            3567999999999999999999999999999999999999999999999999999998 888999999999999999999


Q ss_pred             CeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785          182 AECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       182 g~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP  245 (730)
                      |+.++.+. |...|+.+.|+.+...+++|+ |.++++||-+...... .+.+......|.++..+.
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~~  155 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVAE  155 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEecc
Confidence            99998875 999999999999999999999 6669999998876532 345566678899998864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=2.4e-16  Score=177.45  Aligned_cols=170  Identities=23%  Similarity=0.334  Sum_probs=151.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ....|+.|..+|+|++||++..    +|.+|...+..+.|+|-+.+.++|+.|+.+++||++...+...+++|...|..+
T Consensus        81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l  160 (825)
T KOG0267|consen   81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL  160 (825)
T ss_pred             chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEE
Confidence            5567889999999999999876    588999999999999999999999999999999999888999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~  233 (730)
                      +|+| ++.++++++.|.+++|||+..|+....|. |...+.++.|+|..-+|+.|+.++ |++||+++-+.+.   ....
T Consensus       161 ~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~---s~~~  236 (825)
T KOG0267|consen  161 RLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS---SGKP  236 (825)
T ss_pred             eecC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee---ccCC
Confidence            9999 99999999999999999999999999987 899999999999999999999555 9999999776543   2233


Q ss_pred             CCCCeEEEEEccCCCeEEEE
Q 004785          234 TRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llat  253 (730)
                      ....|.++.|+|+++.++++
T Consensus       237 ~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  237 ETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             ccCCceeeeecCCceeeecC
Confidence            36789999999999955543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=5.8e-15  Score=157.92  Aligned_cols=187  Identities=18%  Similarity=0.190  Sum_probs=147.0

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (730)
                      .+..|+..|.-+.||++|++||+++.|.+..+|++....   ..+++.+|..+|..+.|+| |.+++++|+.|..+++||
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence            578999999999999999999999999999999886543   4678899999999999999 999999999999999999


Q ss_pred             CCCCeEEEEecCC--CCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeEEEEE
Q 004785          179 ASTAECIGSRDFY--RPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       179 l~tg~~i~~l~h~--~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPdG~~Llatg  254 (730)
                      +.+|.+...+.+.  ..+.+++|.|||..+++|+.+ .|..||++......    ..+. ...|.+++.++||+++++.+
T Consensus       298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----WEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc----ccccccceeEEEEEcCCCcEEEEEe
Confidence            9999998887755  789999999999999999954 59999997654322    2222 24689999999999998877


Q ss_pred             eeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          255 EVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       255 svwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      ..-                       .+.+.+.....+..+..+    .-++.+.+.|.|++.+++
T Consensus       374 ~d~-----------------------~i~l~~~e~~~dr~lise----~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  374 VDK-----------------------KIRLYNREARVDRGLISE----EQPITSFSISKDGKLALV  412 (519)
T ss_pred             ccc-----------------------ceeeechhhhhhhccccc----cCceeEEEEcCCCcEEEE
Confidence            322                       222222222222222222    335667788889998887

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.62  E-value=5.1e-14  Score=159.44  Aligned_cols=182  Identities=19%  Similarity=0.253  Sum_probs=152.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEe-
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKVLH-  146 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~l~-  146 (730)
                      ...++..++.|.+.|.+.++|+...    +...|.+.|..++.+||++.+++||.|.+|++||+.-     |...+.++ 
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl  499 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL  499 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence            4467889999999999999998865    5679999999999999999999999999999999732     22222121 


Q ss_pred             ------cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEE
Q 004785          147 ------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWR  218 (730)
Q Consensus       147 ------gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWD  218 (730)
                            .-...|.|+++|| ++++++.+-.|++|+||-+.+-+.... ++|.=+|.++..+||++.+++||.|+ |+||-
T Consensus       500 ~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG  578 (888)
T KOG0306|consen  500 KHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG  578 (888)
T ss_pred             ccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence                  2346799999999 999999999999999999998876554 67999999999999999999999655 99999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS  262 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~  262 (730)
                      ++-+....   .+..|.+.|.+|.|-|....+++++.+..++.|
T Consensus       579 LdFGDCHK---S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqW  619 (888)
T KOG0306|consen  579 LDFGDCHK---SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQW  619 (888)
T ss_pred             cccchhhh---hhhcccCceeEEEEcccceeEEEecCcceEEee
Confidence            99998644   788999999999999987766666665444444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.60  E-value=2.9e-14  Score=150.92  Aligned_cols=159  Identities=18%  Similarity=0.295  Sum_probs=140.7

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      -.|..|+..|.+++.+|+.++++||+.|....||++.+|.....+.+|+..|+++.|+- ++.+|+||..+|.|+||+..
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc
Confidence            35778999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004785          181 TAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE---  255 (730)
Q Consensus       181 tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs---  255 (730)
                      ++.....+. .-..+.-+.|||.+.+|+.|++++ +.+|.+.....   ...+.+|..++++=.|.|||+++++...   
T Consensus       137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~---~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL---CKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce---eeEecCCCCCcccccccCCCceEEEEecCce
Confidence            998887765 556788899999999999999555 99999988654   3478899999999999999998887554   


Q ss_pred             --eCCccCCC
Q 004785          256 --VNDLDSSE  263 (730)
Q Consensus       256 --vwdl~s~~  263 (730)
                        +|+..++.
T Consensus       214 i~~Wn~ktg~  223 (399)
T KOG0296|consen  214 IIVWNPKTGQ  223 (399)
T ss_pred             EEEEecCCCc
Confidence              55555443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2.3e-14  Score=149.36  Aligned_cols=217  Identities=15%  Similarity=0.151  Sum_probs=156.4

Q ss_pred             CCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCC----CC
Q 004785           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSP----PP  107 (730)
Q Consensus        32 sSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~g----H~  107 (730)
                      +..--.+|.+..+.+=.   .......||+.-..--.....+-....++++.|++++.|.+|.+|+++ +++.+    ..
T Consensus       153 ~g~~l~vyk~~K~~dG~---~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq  228 (420)
T KOG2096|consen  153 RGNKLCVYKLVKKTDGS---GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ  228 (420)
T ss_pred             cCCEEEEEEeeecccCC---CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence            34445667776655522   222223344222111111112234456788999999999999999998 44333    34


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECC---CC-----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---TG-----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~---tg-----~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      ..-+..+.||+|++|++++.--.|++|.+-   .|     +.+..++||...|...+|++ +...+++.|.||+++|||+
T Consensus       229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeec
Confidence            456788999999999999998899999862   33     24567899999999999999 9999999999999999998


Q ss_pred             CCC-------eEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCC
Q 004785          180 STA-------ECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA  247 (730)
Q Consensus       180 ~tg-------~~i~~l-----~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG  247 (730)
                      .-.       +.++..     ...+....++++|+|+.||.+.+..++++..++++...  .....|...|.+++|+++|
T Consensus       308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~--~~e~~h~~~Is~is~~~~g  385 (420)
T KOG2096|consen  308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP--ELEDIHSTTISSISYSSDG  385 (420)
T ss_pred             cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccch--hHHHhhcCceeeEEecCCC
Confidence            632       112211     12234457999999999999998889999998877533  3345689999999999999


Q ss_pred             CeEEEEEe
Q 004785          248 APLLLTAE  255 (730)
Q Consensus       248 ~~Llatgs  255 (730)
                      +++++++.
T Consensus       386 ~~~atcGd  393 (420)
T KOG2096|consen  386 KYIATCGD  393 (420)
T ss_pred             cEEeeecc
Confidence            98887765

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=1.4e-14  Score=150.74  Aligned_cols=182  Identities=17%  Similarity=0.242  Sum_probs=154.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC------CC----------
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC------QT----------  138 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl------~t----------  138 (730)
                      .....+.+.+.|.+-++|.++++    ++.||.+.|++++|++.+.++++++.|++..||..      ..          
T Consensus       158 ~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE  237 (481)
T KOG0300|consen  158 STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE  237 (481)
T ss_pred             cCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence            34456678899999999999987    58899999999999999999999999999999973      00          


Q ss_pred             --------------------C----eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCC
Q 004785          139 --------------------G----SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRP  193 (730)
Q Consensus       139 --------------------g----~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~  193 (730)
                                          +    -++..|++|.+.|.+..|-. +++.+++++.|.+..+||+.+|+.+..+ +|...
T Consensus       238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E  316 (481)
T KOG0300|consen  238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSE  316 (481)
T ss_pred             hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchh
Confidence                                0    14567889999999999998 9999999999999999999999999886 58899


Q ss_pred             eEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE-----eeCCccCCCc
Q 004785          194 IASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA-----EVNDLDSSES  264 (730)
Q Consensus       194 V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg-----svwdl~s~~~  264 (730)
                      .+.++-+|..+++++++.+. .++||++..  +.....+.+|...|+++.|.-|.+ +++++     ++|+++.-..
T Consensus       317 LtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             ccccccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccC
Confidence            99999999999999999655 999999833  334568899999999999999887 56543     3888875444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.60  E-value=5.1e-14  Score=165.17  Aligned_cols=165  Identities=22%  Similarity=0.217  Sum_probs=142.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCC------C----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q 004785           77 GRDARRGLASWVEAESLHHLRPKY------C----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKII  134 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t------~----------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVW  134 (730)
                      ...+|.+|++|++|+.|.+|....      +                .|.+|...|.+++|+||+.+|++++.|++|.||
T Consensus        77 ~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   77 FSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             ECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEE
Confidence            345899999999999999999772      0                367999999999999999999999999999999


Q ss_pred             ECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------CCCCeEEEEEcCCCCEEE
Q 004785          135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGELLA  207 (730)
Q Consensus       135 Dl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-------h~~~V~sVafSPdG~~LA  207 (730)
                      |..+.+.++.+++|.+.|..+.|.| -+++|++-+.|++|++|++.+....+.+.       ....+..+.|||||++|+
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             ccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence            9999999999999999999999999 99999999999999999987766655542       234678899999999999


Q ss_pred             EEE--CC-e--EEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785          208 VAS--GH-K--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       208 sgS--dd-~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP  245 (730)
                      +.-  .+ .  +.|.+-.+.+..   ..+.+|..++..+.|+|
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             chhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeCh
Confidence            986  22 2  888876665532   36889999999999998

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.59  E-value=3.3e-14  Score=147.02  Aligned_cols=176  Identities=16%  Similarity=0.176  Sum_probs=144.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT  138 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~-------------------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t  138 (730)
                      ..++.+.+|+.|+.|.+||++..                   .-.+|+-.|..+.|-| |..++.+++.|.++||||+.+
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence            46789999999999999998742                   1236888999999999 777899999999999999999


Q ss_pred             CeEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCe
Q 004785          139 GSCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGE-LLAVAS-GHK  213 (730)
Q Consensus       139 g~~l~~l~gH~~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~-~LAsgS-dd~  213 (730)
                      .+....|+ -.+.|+.-+|+|..  ..++++|..|-.|++.|+.+|.....+ +|.+.|.++.|+|..+ .|++|+ |+.
T Consensus       134 lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~  212 (397)
T KOG4283|consen  134 LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGA  212 (397)
T ss_pred             ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCce
Confidence            98888886 45679999999843  458888999999999999999999887 5999999999999988 567777 556


Q ss_pred             EEEEEcCCCcc------------ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          214 LYIWRYNMREE------------TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       214 I~VWDl~t~~~------------~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |++||++....            ......-..|.+.|..++|+.||.++++.+-
T Consensus       213 irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  213 IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            99999986521            1101123457889999999999999887765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.59  E-value=1.8e-14  Score=154.34  Aligned_cols=175  Identities=18%  Similarity=0.185  Sum_probs=144.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      .....++.+++.+.|+.+++|+....    +|.+|++.|+++.|......+++|+.|.+||+||+....+.+.+- ....
T Consensus       226 d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~  304 (459)
T KOG0288|consen  226 DFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQ  304 (459)
T ss_pred             eecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccc
Confidence            34457788999999999999999875    688999999999999877779999999999999999988887764 2345


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~  230 (730)
                      +..|..+   ...++||-.|++|++||+++..+....+..+.|+++..+++|..|.+++ |+.+.+.|+++.+... +..
T Consensus       305 cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-~~s  380 (459)
T KOG0288|consen  305 CNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-TFS  380 (459)
T ss_pred             ccceEec---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-Eee
Confidence            6667775   4778999999999999999999999999888999999999999888777 7779999999876533 111


Q ss_pred             Ee--cCCCCeEEEEEccCCCeEEEEEe
Q 004785          231 VL--RTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       231 l~--~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..  ......+.+.|||++.|+++++.
T Consensus       381 A~g~k~asDwtrvvfSpd~~YvaAGS~  407 (459)
T KOG0288|consen  381 AEGFKCASDWTRVVFSPDGSYVAAGSA  407 (459)
T ss_pred             ccccccccccceeEECCCCceeeeccC
Confidence            11  12345889999999998777653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.59  E-value=1.9e-14  Score=160.82  Aligned_cols=172  Identities=17%  Similarity=0.262  Sum_probs=149.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEECCCCe--EE--------
Q 004785           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAF-SPDGKTLASTHGDHTVKIIDCQTGS--CL--------  142 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~laf-SPDG~~LaSgS~DgtVrVWDl~tg~--~l--------  142 (730)
                      .++.|++++.|.+|++|+....      ++..|...|.|+++ -++..++|+|+-|+.|.|||+.++.  .+        
T Consensus        84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            6679999999999999998754      58899999999999 7788899999999999999999872  22        


Q ss_pred             EEEe-cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004785          143 KVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRY  219 (730)
Q Consensus       143 ~~l~-gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl  219 (730)
                      ..+. |+...|++++.++ .+.++++|+..+.+++||-++++.+.. .+|...|..+-.++||+.+++++ |+.|++||+
T Consensus       164 ~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             ccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence            2233 8899999999999 889999999999999999999876554 57999999999999999998888 555999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .....+.   .+..|...|+++..+|+=.++.+++.
T Consensus       243 gqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~r  275 (735)
T KOG0308|consen  243 GQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGR  275 (735)
T ss_pred             cccceee---eEEeccCceEEEeeCCCcceEEecCC
Confidence            8887644   68889999999999998888777766

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=4.2e-14  Score=163.17  Aligned_cols=188  Identities=16%  Similarity=0.208  Sum_probs=153.9

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      ....+.......+++++.+++|.+|....+.    |..-.-++.+++|+-+|+++|.||+|..|++.+..+....+.+++
T Consensus        57 ~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg  136 (933)
T KOG1274|consen   57 ELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG  136 (933)
T ss_pred             ceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence            4445555566799999999999999987653    445667899999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------CCCCeEEEEEcCCC-CEEEEEECCeEEEE
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASG-ELLAVASGHKLYIW  217 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---------h~~~V~sVafSPdG-~~LAsgSdd~I~VW  217 (730)
                      |.++|.++.|+| .+++|++.+.||.|++||+.++.+...+.         ....+.-++|+|+| ++++.+.++.|++|
T Consensus       137 h~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy  215 (933)
T KOG1274|consen  137 HDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVY  215 (933)
T ss_pred             cCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEE
Confidence            999999999999 99999999999999999999988766542         13456778999995 56666668889999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s  261 (730)
                      +....+.... .....+...+..+.|+|.|+||+++.-     +|++++
T Consensus       216 ~r~~we~~f~-Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  216 SRKGWELQFK-LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             ccCCceehee-ecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            9888876431 122233445999999999999988764     777664

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.58  E-value=2.7e-14  Score=154.22  Aligned_cols=174  Identities=19%  Similarity=0.235  Sum_probs=146.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------C------------------CCCCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-------P------------------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI  133 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-------~------------------L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrV  133 (730)
                      .+..++.|..|-.|.+||+.-.       +                  -.+|+..|.+++|+.+ .+.||+||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            5678999999999999998631       1                  1269999999999984 468999999999999


Q ss_pred             EECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEEecCCCCeEEEEEcCCCCEE-EEEEC
Q 004785          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRDFYRPIASIAFHASGELL-AVASG  211 (730)
Q Consensus       134 WDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~l~h~~~V~sVafSPdG~~L-AsgSd  211 (730)
                      ||+.+|++...+..|.+.|.++.|+|....++++|+.|++|.+.|.+.. ..-......+.|..++|+|..... +++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            9999999999999999999999999999999999999999999999953 223345677899999999987744 44444


Q ss_pred             -CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          212 -HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       212 -d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       +.|+-+|+|....  ....+..|...|.+|+++..-..++++++
T Consensus       351 dG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t~s  393 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLSTAS  393 (463)
T ss_pred             CceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceeecc
Confidence             5599999998863  44578889999999999999888888765

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.9e-13  Score=137.02  Aligned_cols=177  Identities=24%  Similarity=0.355  Sum_probs=146.6

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeC--CCCC-------CCCCCCCeEEEEECC----CCCEEEEEeC-CCeEEEEECC
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRP--KYCP-------LSPPPRSTIAAAFSP----DGKTLASTHG-DHTVKIIDCQ  137 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~--~t~~-------L~gH~~~Vt~lafSP----DG~~LaSgS~-DgtVrVWDl~  137 (730)
                      ....+-+..+..|++|++|++|++...  +++.       +.-|.+.|..++|-.    .|.+|++++. |..|++-|..
T Consensus        92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~  171 (350)
T KOG0641|consen   92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG  171 (350)
T ss_pred             EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC
Confidence            334455568899999999999988754  4553       456889999999965    3557777754 8889999999


Q ss_pred             CCeEEEEEecCCCCcEEE-EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---C-----CCCeEEEEEcCCCCEEEE
Q 004785          138 TGSCLKVLHGHRRTPWVV-RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---F-----YRPIASIAFHASGELLAV  208 (730)
Q Consensus       138 tg~~l~~l~gH~~~V~sV-afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h-----~~~V~sVafSPdG~~LAs  208 (730)
                      +|+....+.+|++-|.++ .|   ++..+++|+.|.+|++||++-..++..++   |     ...|.+++.+|.|++|++
T Consensus       172 ~g~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s  248 (350)
T KOG0641|consen  172 RGQGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS  248 (350)
T ss_pred             CCCcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence            999999999999998765 45   67999999999999999999999888864   2     247899999999999999


Q ss_pred             EECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          209 ASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       209 gSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      |-.+. ..+||++.+..++   .+..|...|+++.|+|...|+++.+
T Consensus       249 g~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~s  292 (350)
T KOG0641|consen  249 GHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCS  292 (350)
T ss_pred             ccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEec
Confidence            98555 9999999998755   7889999999999999888777654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.56  E-value=3e-14  Score=155.84  Aligned_cols=175  Identities=18%  Similarity=0.255  Sum_probs=129.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCe-E
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS-C  141 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----------------~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~-~  141 (730)
                      .+..|...+.....+++|-...                ..+||...++|.+|+|+ ...+++++.|++++|||+.+-+ .
T Consensus       225 Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q  304 (641)
T KOG0772|consen  225 TGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ  304 (641)
T ss_pred             CCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence            5555555666666777775421                35799999999999995 4578999999999999997753 3


Q ss_pred             EEEEe-----cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--EEE--ecCCC--CeEEEEEcCCCCEEEEEE
Q 004785          142 LKVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--IGS--RDFYR--PIASIAFHASGELLAVAS  210 (730)
Q Consensus       142 l~~l~-----gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--i~~--l~h~~--~V~sVafSPdG~~LAsgS  210 (730)
                      +.+|+     +.+-.++.++|++ ++.+|+.|+.||.|.+||......  ...  -.|..  .|++|+||+||++|++-+
T Consensus       305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            44443     2334688999999 999999999999999999864322  111  23555  899999999999999987


Q ss_pred             -CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          211 -GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       211 -dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       |+.+++||++..++......-......-+.++|||+.+.|+++.+
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS  429 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS  429 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence             666999999987652211122223445678899999997666554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.55  E-value=3.2e-13  Score=141.54  Aligned_cols=140  Identities=27%  Similarity=0.447  Sum_probs=117.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCC----CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPD----G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      ...+...-.|+-+++......  ..|......++|+-|    .-+||.|+.-|.|+|.|+.++++...+.+|.+.|+.|.
T Consensus        65 rvtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik  142 (385)
T KOG1034|consen   65 RVTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIK  142 (385)
T ss_pred             EEEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhh
Confidence            334445555554554443211  257888889999874    33788999999999999999999999999999999999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR  222 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~----h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~  222 (730)
                      |+|++.++++++|.|.+|++||+++..++..++    |.+.|.++.|+++|.+|++++ |..|++|+++..
T Consensus       143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             cCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            999888999999999999999999999999975    899999999999999999998 667999999843

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.2e-12  Score=145.27  Aligned_cols=223  Identities=13%  Similarity=0.140  Sum_probs=152.2

Q ss_pred             CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004785           91 ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (730)
Q Consensus        91 gsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~l  164 (730)
                      ..|.++|.+..   .+..|...+.+..|+|||+.|+..+.   +..|++||+.+++. ..+..+.+.+...+|+| +++.
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP-DG~~  259 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP-DGRK  259 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC-CCCE
Confidence            36788887654   36678889999999999999988864   46899999998875 44555667778899999 6654


Q ss_pred             -EEEEeCCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCC
Q 004785          165 -IASGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRS  237 (730)
Q Consensus       165 -LaSgS~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~  237 (730)
                       +++.+.++.  |++||+.+++......+........|+|||+.|+..++.    .|++||+..++..    .+..+...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGR  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCc
Confidence             456666655  888899988776665566667789999999999888742    3888998765432    23334455


Q ss_pred             eEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCE
Q 004785          238 LRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (730)
Q Consensus       238 V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~r  317 (730)
                      +....|+|||++++.+.....    .                ..+.+++..... ..+....    .....|.|+|||+.
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~----~----------------~~i~~~d~~~~~-~~~lt~~----~~~~~p~~spDG~~  390 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGG----Q----------------FSIGVMKPDGSG-ERILTSG----FLVEGPTWAPNGRV  390 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCC----c----------------eEEEEEECCCCc-eEeccCC----CCCCCCeECCCCCE
Confidence            677899999998887653111    0                123334432221 1111111    12336899999999


Q ss_pred             EEEEecCCCCC--cccceeecCCCcceee
Q 004785          318 ISLQHTEHDSG--ATRTQQSLRSSSSVRL  344 (730)
Q Consensus       318 I~~~~~~~dsg--s~~~~~~~~ss~~~~l  344 (730)
                      |++........  ..++..++++...+++
T Consensus       391 i~~~~~~~~~~~~~~L~~~dl~g~~~~~l  419 (435)
T PRK05137        391 IMFFRQTPGSGGAPKLYTVDLTGRNEREV  419 (435)
T ss_pred             EEEEEccCCCCCcceEEEEECCCCceEEc
Confidence            99977654432  4677777776655544

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.54  E-value=1.9e-13  Score=146.47  Aligned_cols=172  Identities=23%  Similarity=0.325  Sum_probs=138.3

Q ss_pred             EEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC--------C---
Q 004785           83 GLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--------T---  138 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~-------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~--------t---  138 (730)
                      .+++++.|..|++|.....             .|..|...|+++.|+|+|.+||+|++++.|.+|...        +   
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~  107 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD  107 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence            8999999999999987642             377899999999999999999999999999999765        2   


Q ss_pred             -----CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC
Q 004785          139 -----GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH  212 (730)
Q Consensus       139 -----g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd  212 (730)
                           ....+.+.+|...|+.++|+| ++.++++++.|+++++||+..|+....+. |...+..++|+|-++++++-+.+
T Consensus       108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~d  186 (434)
T KOG1009|consen  108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSD  186 (434)
T ss_pred             hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccC
Confidence                 234567789999999999999 99999999999999999999999988864 88999999999999999988755


Q ss_pred             e-EEEEEcCCCccccCCe----------------EEecCC----CCeEEEEEccCCCeEEEEEe
Q 004785          213 K-LYIWRYNMREETSSPR----------------IVLRTR----RSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       213 ~-I~VWDl~t~~~~~~~~----------------~l~~h~----~~V~sVaFSPdG~~Llatgs  255 (730)
                      . .+++++..........                ...-|+    .-.+.++|+|||..+++-++
T Consensus       187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            4 6666554433211000                111122    23467899999998877554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=4.5e-13  Score=139.77  Aligned_cols=177  Identities=17%  Similarity=0.198  Sum_probs=139.9

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ..-|..|+.|..+|.|.+||+.|.    .+.+|..+|++++||+||++|+++|.|..|++||+..|.+++.++ -..+|+
T Consensus        32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~  110 (405)
T KOG1273|consen   32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVW  110 (405)
T ss_pred             ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccc
Confidence            457899999999999999999885    588999999999999999999999999999999999999998887 557899


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCC----CCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccC
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFY----RPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS  227 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~----~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~  227 (730)
                      ...|+|.+.+.++..-.+..-.+-++..++.... ....    ....+..|++.|+++++|... .+.++|..+.+.+..
T Consensus       111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas  190 (405)
T KOG1273|consen  111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS  190 (405)
T ss_pred             eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence            9999997778887777777777777765432221 1111    122334599999999999864 599999998876542


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgsvw  257 (730)
                      .+..  ....|.++.|+..|+++++.+..-
T Consensus       191 ~rit--s~~~IK~I~~s~~g~~liiNtsDR  218 (405)
T KOG1273|consen  191 FRIT--SVQAIKQIIVSRKGRFLIINTSDR  218 (405)
T ss_pred             eeec--hheeeeEEEEeccCcEEEEecCCc
Confidence            2111  136789999999999888766533

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.4e-12  Score=136.37  Aligned_cols=185  Identities=15%  Similarity=0.189  Sum_probs=140.0

Q ss_pred             CCCEEEEEeC--CCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVE--AESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~--DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ....++.++.  |.+||..++.+.+    +.||...|+.++.+|-+..+++++.|++|++||++..++...+.....+  
T Consensus        67 ~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--  144 (311)
T KOG1446|consen   67 HSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--  144 (311)
T ss_pred             CCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--
Confidence            3344444444  8889999988763    7899999999999998899999999999999999988887666544333  


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCC--eEEEEe----cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSR----DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~i~~l----~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~  226 (730)
                      .++|.| .|-++|.+.....|+|+|++.-  .+...+    +.....+.+.|+|||++|..++++. +++.|.-.+....
T Consensus       145 i~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~  223 (311)
T KOG1446|consen  145 IAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS  223 (311)
T ss_pred             ceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence            489999 8999999888889999999863  233333    2356789999999999988888665 9999998887544


Q ss_pred             CCeEEecC---CCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEec
Q 004785          227 SPRIVLRT---RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (730)
Q Consensus       227 ~~~~l~~h---~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t  270 (730)
                         .+..+   ...--+..|+||+++++.+..     +|++.++.....+.+
T Consensus       224 ---tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  224 ---TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             ---eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence               23332   222357789999998887765     677765554444443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.53  E-value=5.3e-14  Score=148.78  Aligned_cols=210  Identities=13%  Similarity=0.120  Sum_probs=156.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------
Q 004785           82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------------------  138 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-------------------  138 (730)
                      ..+++|+.||.|++||+...    .+..|.+.|..|++..  ..++++++|.+|+.|.+.-                   
T Consensus        80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence            46889999999999999863    6889999999999986  6788999999999997421                   


Q ss_pred             --------Ce-----------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEE
Q 004785          139 --------GS-----------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAF  199 (730)
Q Consensus       139 --------g~-----------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVaf  199 (730)
                              |+           ++..+.--...|.++.|+|....+|++|..|+.|.|+|++++++++.+-....-+.|+|
T Consensus       158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Isw  237 (433)
T KOG0268|consen  158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICW  237 (433)
T ss_pred             ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceec
Confidence                    11           22222223456788999997778999999999999999999999998877778889999


Q ss_pred             cCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCC
Q 004785          200 HASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYP  278 (730)
Q Consensus       200 SPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p  278 (730)
                      +|.+-.+++++.| .++.||++.-..  ......+|.+.|.+|.|||.|+-+++++-+-.++      .+....++.+  
T Consensus       238 nPeafnF~~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR------If~~~~~~SR--  307 (433)
T KOG0268|consen  238 NPEAFNFVAANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR------IFPVNHGHSR--  307 (433)
T ss_pred             Cccccceeeccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEE------EeecCCCcch--
Confidence            9976667777744 499999987654  3457788999999999999999877665332222      2333333321  


Q ss_pred             CCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          279 PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       279 ~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                                  +-.+...     -..++.+.||-|.++|+-
T Consensus       308 ------------diYhtkR-----Mq~V~~Vk~S~Dskyi~S  332 (433)
T KOG0268|consen  308 ------------DIYHTKR-----MQHVFCVKYSMDSKYIIS  332 (433)
T ss_pred             ------------hhhhHhh-----hheeeEEEEeccccEEEe
Confidence                        1111110     113457899999999985

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.53  E-value=8.1e-14  Score=156.87  Aligned_cols=172  Identities=16%  Similarity=0.235  Sum_probs=145.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      ..+.+|+.|+.|+.|.+|.....    .|++|+..|.|+....++. |++||.|.++++|-.  +++...+++|...|++
T Consensus        69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA  145 (745)
T ss_pred             ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence            45667999999999999998765    6899999999999888887 999999999999975  6667779999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      ++.-| .. .++|||.|.+|++|.-  ++.++++ +|.+.|+.+++-+++.+|-++.|+.|++|++ +++.   .....+
T Consensus       146 v~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~---l~~~~g  217 (745)
T KOG0301|consen  146 VASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV---LLEMHG  217 (745)
T ss_pred             eeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce---eeeeec
Confidence            99988 44 8999999999999986  6666665 5999999999999988877777788999999 4554   347889


Q ss_pred             CCCCeEEEEEccCCCeEEEEEeeCCccC
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAEVNDLDS  261 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgsvwdl~s  261 (730)
                      |...|+++....++..++++++...++.
T Consensus       218 htn~vYsis~~~~~~~Ivs~gEDrtlri  245 (745)
T KOG0301|consen  218 HTNFVYSISMALSDGLIVSTGEDRTLRI  245 (745)
T ss_pred             cceEEEEEEecCCCCeEEEecCCceEEE
Confidence            9999999997777777888887444433

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.53  E-value=6.5e-13  Score=144.16  Aligned_cols=183  Identities=16%  Similarity=0.117  Sum_probs=145.6

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe------
Q 004785           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS------  140 (730)
Q Consensus        71 s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~------  140 (730)
                      ..+..+.+.+++.|++|..|..|.+|+.++.    .+++|.+.|.+++|-..-..|++++.|++|++|+++...      
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence            3566777888999999999999999999886    478999999999998777789999999999999884221      


Q ss_pred             -----------------------------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785          141 -----------------------------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (730)
Q Consensus       141 -----------------------------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i  185 (730)
                                                         ....|.+|.+.+-|++|-  +...|++|+.||.|.+|++.+.+++
T Consensus       284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             CCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCce
Confidence                                               112345777788888885  5788999999999999999998887


Q ss_pred             EEec--C-----------CCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          186 GSRD--F-----------YRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       186 ~~l~--h-----------~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      .+..  |           +..|++++..|..+++++|+.+ .|++|-+..+-....+.....-.+.|++|+|+++|++++
T Consensus       362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~iv  441 (479)
T KOG0299|consen  362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIV  441 (479)
T ss_pred             eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEE
Confidence            7642  2           2279999999999999999955 499999987733222333444678899999999999887


Q ss_pred             EEEe
Q 004785          252 LTAE  255 (730)
Q Consensus       252 atgs  255 (730)
                      ++.+
T Consensus       442 agiG  445 (479)
T KOG0299|consen  442 AGIG  445 (479)
T ss_pred             Eecc
Confidence            7654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.52  E-value=2e-13  Score=141.35  Aligned_cols=199  Identities=16%  Similarity=0.213  Sum_probs=154.6

Q ss_pred             CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE------E----EE-----EecCCCCcEEEEEccCCCCEEE
Q 004785          103 LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC------L----KV-----LHGHRRTPWVVRFHPLNPTIIA  166 (730)
Q Consensus       103 L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~------l----~~-----l~gH~~~V~sVafSP~dg~lLa  166 (730)
                      ...|.+.|+++...+ .|+++++|+.||.|.+||+++...      +    ..     -.+|+-.|..+.|-|.|...|.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            346889999999998 899999999999999999976430      1    10     1367888999999998999999


Q ss_pred             EEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC---EEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004785          167 SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE---LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (730)
Q Consensus       167 SgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~---~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (730)
                      +++.|.++++||..+-+....+..++.|++-+|+|-..   ++|+|.++. |++.|+..+....   .+.+|...|.+|.
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH---~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH---TLSGHRDGVLAVE  195 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee---eeccccCceEEEE
Confidence            99999999999999999988999999999999999543   677777665 9999999998644   7899999999999


Q ss_pred             EccCCCeEEEEEe------eCCccCC-CcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCC
Q 004785          243 FHPHAAPLLLTAE------VNDLDSS-ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDD  315 (730)
Q Consensus       243 FSPdG~~Llatgs------vwdl~s~-~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg  315 (730)
                      |+|...+++++++      .||++.. .+...+..+.+.  ++ +.+.              .-......+...+|+.|+
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k--~~-p~~~--------------~n~ah~gkvngla~tSd~  258 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK--RP-PILK--------------TNTAHYGKVNGLAWTSDA  258 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCc--cC-cccc--------------ccccccceeeeeeecccc
Confidence            9999999999876      8888855 333344433331  11 1111              112223355578899999


Q ss_pred             CEEEEE
Q 004785          316 ERISLQ  321 (730)
Q Consensus       316 ~rI~~~  321 (730)
                      ..+..-
T Consensus       259 ~~l~~~  264 (397)
T KOG4283|consen  259 RYLASC  264 (397)
T ss_pred             hhhhhc
Confidence            887763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=2.8e-14  Score=168.01  Aligned_cols=187  Identities=19%  Similarity=0.222  Sum_probs=145.2

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEE--ecC
Q 004785           82 RGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVL--HGH  148 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l--~gH  148 (730)
                      +.|+.|.+||.|.+||...-          ++..|++.|..+.|++.+ ++||+|++||.|.|||+.+-+.-..+  ..-
T Consensus        81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~  160 (1049)
T KOG0307|consen   81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP  160 (1049)
T ss_pred             ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence            46888999999999997651          467899999999999954 59999999999999999875433333  124


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCC-EEEEEEC-Ce---EEEEEcC
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGE-LLAVASG-HK---LYIWRYN  220 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~-~LAsgSd-d~---I~VWDl~  220 (730)
                      ...|.+++|+.....+|++++.+|.+.|||++..+.+..+...   ..+..++|||++. .|+++++ ++   |.+||+|
T Consensus       161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR  240 (1049)
T ss_pred             cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence            5679999999878889999999999999999998777665432   3488999999875 6666663 33   9999998


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEE-EEe-----eCCccCCCcceeEec
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLL-TAE-----VNDLDSSESSLTLAT  270 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla-tgs-----vwdl~s~~~~~~l~t  270 (730)
                      ....  ....+..|...|.++.|++.+..++. ++.     .|+..+++....+-+
T Consensus       241 ~ass--P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  241 FASS--PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA  294 (1049)
T ss_pred             ccCC--chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence            8765  23456789999999999998854554 444     666666555544443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.51  E-value=6.3e-13  Score=138.78  Aligned_cols=146  Identities=23%  Similarity=0.344  Sum_probs=123.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC--EEEEEeCCCcEEEEECC
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT--IIASGSLDHEVRLWNAS  180 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~--lLaSgS~DgtVrLWDl~  180 (730)
                      +..|.++|++++.+  |.++|+||.|.+|+|||+.+...+..+-.|.+.|+++.|.+ .-.  .|++|+.||.|.+|+..
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence            56899999999996  89999999999999999999999999999999999999987 443  89999999999999999


Q ss_pred             CCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          181 TAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       181 tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+++..+. |.+.|+.++.||.|++..+.+ |+.+++|++-.++...    ...-...-+.|.|+|.|.+++..+.
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEec
Confidence            998888865 888999999999999766555 5569999998876522    2222333345999999998777664

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=4.5e-12  Score=132.25  Aligned_cols=241  Identities=10%  Similarity=0.100  Sum_probs=165.7

Q ss_pred             CCccceeeeccCcceeecCCCC----------eEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEEC
Q 004785           50 RTKHSSKRLLGETARKCSGSFS----------QIFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFS  116 (730)
Q Consensus        50 ~~~~~~k~~wd~~~~~~s~s~s----------~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafS  116 (730)
                      .+..+....||..+..+.....          +++-..-.+...+++|.-|+.|+++|+.++   ++..|...|.|+.++
T Consensus        24 ~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~  103 (323)
T KOG1036|consen   24 SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYS  103 (323)
T ss_pred             cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEee
Confidence            3344445557777766553322          222222234678999999999999999987   578899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE---EecCCCC
Q 004785          117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG---SRDFYRP  193 (730)
Q Consensus       117 PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~---~l~h~~~  193 (730)
                      +....+++||+|++|++||.+.......+. ....|.++..   .++.|+.|+.|..|.+||+++.....   .-..+..
T Consensus       104 ~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyq  179 (323)
T KOG1036|consen  104 YEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQ  179 (323)
T ss_pred             ccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeE
Confidence            988899999999999999998755555554 3347888888   56889999999999999999865433   2235678


Q ss_pred             eEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc-CCeEEecCC---------CCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785          194 IASIAFHASGELLAVAS-GHKLYIWRYNMREETS-SPRIVLRTR---------RSLRAVHFHPHAAPLLLTAEVNDLDSS  262 (730)
Q Consensus       194 V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~-~~~~l~~h~---------~~V~sVaFSPdG~~Llatgsvwdl~s~  262 (730)
                      +.++++-|++.-.++++ +++|.+=.++..++.. ....+.-|.         -+|++++|+|--..+++++++.     
T Consensus       180 tR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-----  254 (323)
T KOG1036|consen  180 TRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-----  254 (323)
T ss_pred             EEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc-----
Confidence            99999999888666666 7886665555543221 122333342         2689999999887777776521     


Q ss_pred             CcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          263 ESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       263 ~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                                        .|.+|+....+.+...   ...+..+-..+|+.||..+++
T Consensus       255 ------------------~V~~Wd~~~rKrl~q~---~~~~~SI~slsfs~dG~~LAi  291 (323)
T KOG1036|consen  255 ------------------IVNIWDLFNRKRLKQL---AKYETSISSLSFSMDGSLLAI  291 (323)
T ss_pred             ------------------eEEEccCcchhhhhhc---cCCCCceEEEEeccCCCeEEE
Confidence                              2333333322222111   111223446789999999998

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=2.2e-13  Score=138.17  Aligned_cols=183  Identities=16%  Similarity=0.187  Sum_probs=144.5

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCC---eEEEEEe
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTG---SCLKVLH  146 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg---~~l~~l~  146 (730)
                      ..-|..|++++.|++|.+|....++      ...|...|++++|.|.  |-.|+.++.||+|.|.++++.   ...+...
T Consensus        67 Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~  146 (299)
T KOG1332|consen   67 PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF  146 (299)
T ss_pred             cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence            3468899999999999999988773      5589999999999994  668999999999999988664   2234557


Q ss_pred             cCCCCcEEEEEccCC--C-----------CEEEEEeCCCcEEEEECCCCeEEE---EecCCCCeEEEEEcCCC----CEE
Q 004785          147 GHRRTPWVVRFHPLN--P-----------TIIASGSLDHEVRLWNASTAECIG---SRDFYRPIASIAFHASG----ELL  206 (730)
Q Consensus       147 gH~~~V~sVafSP~d--g-----------~lLaSgS~DgtVrLWDl~tg~~i~---~l~h~~~V~sVafSPdG----~~L  206 (730)
                      .|.-.|+++.|.|..  +           +.|++|+.|+.|+||+...++-+.   .-+|.+.|+.++|.|.-    .+|
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i  226 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI  226 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence            899999999999931  2           569999999999999998874322   23589999999999964    378


Q ss_pred             EEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785          207 AVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD  260 (730)
Q Consensus       207 AsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~  260 (730)
                      |+++ |++|.||-.+...+......+......++.+.||..|..|+.+++.+.+.
T Consensus       227 AS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt  281 (299)
T KOG1332|consen  227 ASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT  281 (299)
T ss_pred             EEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence            9998 55599998874433333444555678899999999999888777655443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.50  E-value=2.9e-13  Score=152.23  Aligned_cols=192  Identities=18%  Similarity=0.233  Sum_probs=160.1

Q ss_pred             ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC----CCCCCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEECCC
Q 004785           66 CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY----CPLSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQT  138 (730)
Q Consensus        66 ~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t----~~L~gH~~~Vt~lafSP---DG~~LaSgS~DgtVrVWDl~t  138 (730)
                      +...++....+.+.++++|++|...|.+++|++..    +.+..|...|.|+.||.   ..++||+++.|+.|.|||+..
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            45667788888889999999999999999999864    46789999999999996   457899999999999999854


Q ss_pred             -CeEEEEEecCCCCcEEEEEccC------------------------------------------------CCCEEEEEe
Q 004785          139 -GSCLKVLHGHRRTPWVVRFHPL------------------------------------------------NPTIIASGS  169 (730)
Q Consensus       139 -g~~l~~l~gH~~~V~sVafSP~------------------------------------------------dg~lLaSgS  169 (730)
                       ...+.++.+|...|++|.|.-.                                                ..+++++++
T Consensus       536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence             3444556666666666555431                                                447899999


Q ss_pred             CCCcEEEEECCCCeEEEEec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEc
Q 004785          170 LDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFH  244 (730)
Q Consensus       170 ~DgtVrLWDl~tg~~i~~l~----h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS  244 (730)
                      .|..|+|||+.+|+.++.|.    |.+....+..+|.|.|||+.+.++ +.++|+.+++.+.   ...+|...|+.+.|.
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKFL  692 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeeeec
Confidence            99999999999999999875    567778899999999999998655 9999999999765   788999999999999


Q ss_pred             cCCCeEEEEEe-----eCCcc
Q 004785          245 PHAAPLLLTAE-----VNDLD  260 (730)
Q Consensus       245 PdG~~Llatgs-----vwdl~  260 (730)
                      +|-++|+..++     +|.+.
T Consensus       693 nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ccchhheeecCCceEEEEECc
Confidence            99999998766     66544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.50  E-value=5.4e-13  Score=150.36  Aligned_cols=164  Identities=20%  Similarity=0.236  Sum_probs=135.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVaf  157 (730)
                      ....+++|+-|.++++|....+  .+.+|+..|.++++-|++ .++|||.|.+||+|.-  ++.+++|++|++.|..+++
T Consensus       111 ~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~v  187 (745)
T KOG0301|consen  111 EDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAV  187 (745)
T ss_pred             CcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEE
Confidence            3344899999999999998755  589999999999999988 8899999999999985  8889999999999999999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEECCCCeEEE-EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCC
Q 004785          158 HPLNPTIIASGSLDHEVRLWNASTAECIG-SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~-~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                      -+  +..|+|++.||.|++||+ +|+++. ..+|..-|++++...++..+++++ |++++||+..  +..   ..+.-..
T Consensus       188 l~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~---q~I~lPt  259 (745)
T KOG0301|consen  188 LD--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV---QVITLPT  259 (745)
T ss_pred             ec--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE---EEEecCc
Confidence            86  557899999999999999 555554 567999999999777777777777 5559999876  222   2333344


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004785          236 RSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..|+++.+-++|. ++++++
T Consensus       260 tsiWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  260 TSIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             cceEEEEEeeCCC-EEEecc
Confidence            5899999999999 566555

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.1e-12  Score=151.62  Aligned_cols=173  Identities=18%  Similarity=0.267  Sum_probs=140.9

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ...+...+|..++.|++|-.|++.+....    .+.+|.++|.++.|+|++.+||+.+-||.|++||+.++.+...+.+-
T Consensus       100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v  179 (933)
T KOG1274|consen  100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGV  179 (933)
T ss_pred             eEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccC
Confidence            33445568889999999999999998765    58899999999999999999999999999999999999877666432


Q ss_pred             --------CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEE-CCeEEE
Q 004785          149 --------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLYI  216 (730)
Q Consensus       149 --------~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgS-dd~I~V  216 (730)
                              ...+.-++|+| ++..++....|++|++++..+.+....+.   +...+..+.|+|+|+|||+++ ++.|.|
T Consensus       180 ~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~v  258 (933)
T KOG1274|consen  180 DKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILV  258 (933)
T ss_pred             CccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEE
Confidence                    34466799999 66666667789999999999988877653   334599999999999999999 666999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ||+++-+.       ..-...|.+++|.|+...+-..
T Consensus       259 Wnv~t~~~-------~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  259 WNVDTHER-------HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             Eecccchh-------ccccceeEEEecCCCCCeeEEE
Confidence            99988321       2335689999999998855443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.49  E-value=5.6e-12  Score=130.94  Aligned_cols=184  Identities=17%  Similarity=0.181  Sum_probs=129.9

Q ss_pred             cCCCEEE-EEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCcE
Q 004785           79 DARRGLA-SWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        79 d~g~~L~-Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      .+++.++ +...++.|++||+.+.+..   .+...+.+++|+|||+++++++.++ .+.+||..+++.+..+.. ...+.
T Consensus        82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~  160 (300)
T TIGR03866        82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPR  160 (300)
T ss_pred             CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCcc
Confidence            3445554 4556899999999875321   2233578899999999999988765 577889998887665543 23467


Q ss_pred             EEEEccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCC------C--CeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004785          154 VVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFY------R--PIASIAFHASGELLAVAS--GHKLYIWRYNMR  222 (730)
Q Consensus       154 sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h~------~--~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~  222 (730)
                      .++|+| +++++ +++..|+.|++||+.+++.+..+...      .  ....++|+|+|++++++.  ++.|.+||+++.
T Consensus       161 ~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~  239 (300)
T TIGR03866       161 FAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY  239 (300)
T ss_pred             EEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence            899999 66666 55567999999999998876654311      1  235688999999866553  456999999876


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCcceeE
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTL  268 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~~~~l  268 (730)
                      +...    ...+...+.+++|+|+|++|+++..      +|++..++....+
T Consensus       240 ~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       240 EVLD----YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             cEEE----EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            6432    2234457899999999998877642      6666654444444

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=9.9e-12  Score=139.98  Aligned_cols=222  Identities=14%  Similarity=0.107  Sum_probs=146.2

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL  165 (730)
                      .|.+||.+..   .+..+...+...+|||||+.|+..+.   +..|++||+.+|+... +....+.+..++|+| +++.|
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKL  257 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEE
Confidence            5888887643   35567778999999999999987653   4579999998886432 222333455789999 66655


Q ss_pred             E-EEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEEecCCCCe
Q 004785          166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       166 a-SgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd--~--I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      + +.+.++  .|++||+.+++..........+....|+|||+.|+..++.  .  |+++|+.+++..    .+.......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~  333 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN  333 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence            5 445555  5999999998877666666677889999999999888753  2  666676665432    233344456


Q ss_pred             EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI  318 (730)
                      ....|+|||++++.+......                    ..+.+++..++....+. ..    .....|.|+|||+.|
T Consensus       334 ~~~~~SpDG~~Ia~~~~~~g~--------------------~~I~~~dl~~g~~~~Lt-~~----~~~~~p~~SpDG~~i  388 (429)
T PRK03629        334 QDADVSSDGKFMVMVSSNGGQ--------------------QHIAKQDLATGGVQVLT-DT----FLDETPSIAPNGTMV  388 (429)
T ss_pred             cCEEECCCCCEEEEEEccCCC--------------------ceEEEEECCCCCeEEeC-CC----CCCCCceECCCCCEE
Confidence            678999999988876642210                    12344443333222111 10    112368999999999


Q ss_pred             EEEecCCCCCcccceeecCCCcceeee
Q 004785          319 SLQHTEHDSGATRTQQSLRSSSSVRLL  345 (730)
Q Consensus       319 ~~~~~~~dsgs~~~~~~~~ss~~~~l~  345 (730)
                      ++...+.. ...++..++++....+|+
T Consensus       389 ~~~s~~~~-~~~l~~~~~~G~~~~~l~  414 (429)
T PRK03629        389 IYSSSQGM-GSVLNLVSTDGRFKARLP  414 (429)
T ss_pred             EEEEcCCC-ceEEEEEECCCCCeEECc
Confidence            99666433 334666677666666554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.47  E-value=1.5e-12  Score=149.24  Aligned_cols=178  Identities=13%  Similarity=0.098  Sum_probs=152.8

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV  144 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L---~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~  144 (730)
                      ...+....-|...+.|...|.|.+|+++.+    .+   ..|.+.|++++...-++.+++++.+|.+++||+.+...+..
T Consensus       451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~  530 (910)
T KOG1539|consen  451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS  530 (910)
T ss_pred             eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence            455555667888999999999999999987    23   48999999999998899999999999999999998887777


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004785          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR  222 (730)
Q Consensus       145 l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~  222 (730)
                      ++ -...+.++..+. ...+++.+..|-.|+++|..+.+.++.+. |...|++++|||||++|++++ |..|++||+.++
T Consensus       531 l~-l~~~~~~iv~hr-~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  531 LR-LGSSITGIVYHR-VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             ec-cCCCcceeeeee-hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence            75 345678888888 88899999999999999999998888875 999999999999999999999 566999999999


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+.    ...-+....++.|+|+|.+|+++-.
T Consensus       609 ~lID----~~~vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  609 TLID----GLLVDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             ceee----eEecCCcceeeEECCCCCEEEEEEe
Confidence            8755    3445778899999999997766543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=9.9e-12  Score=139.96  Aligned_cols=221  Identities=14%  Similarity=0.142  Sum_probs=146.6

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-E
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-I  164 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-l  164 (730)
                      .|.+||....   .+..+...+.+..|+|||+.|+..+.   +..|++||+.+++.. .+....+....++|+| +++ +
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp-DG~~l  262 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP-DGRRL  262 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC-CCCEE
Confidence            5888987644   36677788999999999999998875   347999999888753 3444455566789999 565 5


Q ss_pred             EEEEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC--e--EEEEEcCCCccccCCeEEecCCCCe
Q 004785          165 IASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH--K--LYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       165 LaSgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd--~--I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      +++.+.++  .|++||+.+++......+.......+|+|||+.|+..++.  .  |+++|+.+++...    +..+....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~  338 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN  338 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence            55666665  5999999998876655555556788999999999888742  2  7777776654322    22233445


Q ss_pred             EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI  318 (730)
                      ..++|+|||++++.+....    .          .      ..+.+++..++....+...    . ....|.|++||+.|
T Consensus       339 ~~~~~SpDG~~Ia~~~~~~----~----------~------~~I~v~d~~~g~~~~Lt~~----~-~~~~p~~spdG~~i  393 (433)
T PRK04922        339 ARASVSPDGKKIAMVHGSG----G----------Q------YRIAVMDLSTGSVRTLTPG----S-LDESPSFAPNGSMV  393 (433)
T ss_pred             cCEEECCCCCEEEEEECCC----C----------c------eeEEEEECCCCCeEECCCC----C-CCCCceECCCCCEE
Confidence            5789999999888765311    0          0      1344444433332222111    0 12257999999999


Q ss_pred             EEEecCCCCCcccceeecCCCcceee
Q 004785          319 SLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       319 ~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                      ++..... ....++..++++....++
T Consensus       394 ~~~s~~~-g~~~L~~~~~~g~~~~~l  418 (433)
T PRK04922        394 LYATREG-GRGVLAAVSTDGRVRQRL  418 (433)
T ss_pred             EEEEecC-CceEEEEEECCCCceEEc
Confidence            9876652 234566666665444444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.46  E-value=7.1e-13  Score=139.00  Aligned_cols=174  Identities=23%  Similarity=0.325  Sum_probs=134.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCc
Q 004785           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRTP  152 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~~~V  152 (730)
                      .-.++.++.-|.|++.|...+    .+.+|...|+.+.|.|+ .++++++|.|.+|++||+++..++..|   .+|.+.|
T Consensus       105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV  184 (385)
T KOG1034|consen  105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV  184 (385)
T ss_pred             CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence            457778888999999998865    47899999999999995 578999999999999999999999887   5799999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeE------E----------------E---Ee----cCC------------
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC------I----------------G---SR----DFY------------  191 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~------i----------------~---~l----~h~------------  191 (730)
                      .++.|++ ++++++|++.|.++++|++...+.      .                .   .+    -|.            
T Consensus       185 LSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~  263 (385)
T KOG1034|consen  185 LSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF  263 (385)
T ss_pred             EEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence            9999999 889999999999999999973210      0                0   00    000            


Q ss_pred             ------------------------------------------CCeEE--EEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004785          192 ------------------------------------------RPIAS--IAFHASGELLAVASG-HKLYIWRYNMREETS  226 (730)
Q Consensus       192 ------------------------------------------~~V~s--VafSPdG~~LAsgSd-d~I~VWDl~t~~~~~  226 (730)
                                                                ..|.-  .+|+|.++.||.|.. ++|++||++..+...
T Consensus       264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~  343 (385)
T KOG1034|consen  264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK  343 (385)
T ss_pred             eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence                                                      01122  345677788888884 559999998877633


Q ss_pred             CCeEE-ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          227 SPRIV-LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       227 ~~~~l-~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..... ......|+..+|+.||..|++.++
T Consensus       344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd  373 (385)
T KOG1034|consen  344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCD  373 (385)
T ss_pred             CceEEeccccceeeeeeecccCcEEEEEeC
Confidence            22222 223568999999999998888776

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.45  E-value=1.6e-12  Score=145.48  Aligned_cols=188  Identities=18%  Similarity=0.227  Sum_probs=142.5

Q ss_pred             CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004785           70 FSQIFEAGRDARRGLASWVEAESLHHLRPKYC----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (730)
Q Consensus        70 ~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg  139 (730)
                      |...+.+.......|+.+.+||.|.++|.+..          ....|...|.++.|-|-...|++++.|.++++||++++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            44455556667788999999999999997653          23479999999999996678999999999999999999


Q ss_pred             eEEEE--EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--------------------EEE--------ec
Q 004785          140 SCLKV--LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--------------------IGS--------RD  189 (730)
Q Consensus       140 ~~l~~--l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--------------------i~~--------l~  189 (730)
                      +++..  +.||.+.|.+++|.|.+...|++|+.||.|.|||++-...                    .+.        ..
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            88765  8999999999999999999999999999999999874321                    000        11


Q ss_pred             CCCCeEE---EEEcCCCCEEEEEE--CCeEEEEEcCCCccccC-----CeEEecC---CCCeEEEEEccCCCeEEEEEee
Q 004785          190 FYRPIAS---IAFHASGELLAVAS--GHKLYIWRYNMREETSS-----PRIVLRT---RRSLRAVHFHPHAAPLLLTAEV  256 (730)
Q Consensus       190 h~~~V~s---VafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~-----~~~l~~h---~~~V~sVaFSPdG~~Llatgsv  256 (730)
                      +...|.+   +.+.-|...||+++  |+.|+|||+++......     ...+..|   ...+.++.....|.++++++.+
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            2234444   55667888899888  44599999987643211     0111222   3357788888889999998874


Q ss_pred             C
Q 004785          257 N  257 (730)
Q Consensus       257 w  257 (730)
                      +
T Consensus       293 ~  293 (720)
T KOG0321|consen  293 N  293 (720)
T ss_pred             C
Confidence            3

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.45  E-value=2.6e-12  Score=139.39  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=143.6

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE--EEEE
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC--LKVL  145 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~--l~~l  145 (730)
                      -......+++|.+.|.|.+||+.+.        .+..|..+|.++.|+| +-..+++.|.||+|++-|++++..  +..+
T Consensus       196 Pt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~  275 (498)
T KOG4328|consen  196 PTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL  275 (498)
T ss_pred             ccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc
Confidence            3456688999999999999999532        3678999999999999 667899999999999999988643  3333


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEE-ecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNM  221 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~-l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t  221 (730)
                      +.....+..+.|+. +...++.+..=|...+||++++.. ... .-|...|++++++|... +|++++ |++++|||++.
T Consensus       276 ~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  276 DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             CccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh
Confidence            33555677888888 555666666666999999998754 222 34778999999999775 778888 66699999987


Q ss_pred             CccccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCC
Q 004785          222 REETSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSS  262 (730)
Q Consensus       222 ~~~~~~-~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~  262 (730)
                      -..... ......|...|.+..|||+|-.|++++-.+.++..
T Consensus       355 l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~  396 (498)
T KOG4328|consen  355 LRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF  396 (498)
T ss_pred             hcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence            654332 34567799999999999999889988876655533

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.45  E-value=1.7e-12  Score=144.47  Aligned_cols=257  Identities=17%  Similarity=0.106  Sum_probs=168.7

Q ss_pred             CCCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC--------C
Q 004785           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKY--------C  101 (730)
Q Consensus        30 ~rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t--------~  101 (730)
                      ++.|||+|.-....++|.+..++......-..+.+..+.+|  +.+.....|         +++.+.-+..        +
T Consensus         5 F~aSKfknt~p~vPk~E~~i~di~vG~~~~~~n~I~aS~~f--lAFn~e~~G---------~~lgvlPl~~~Gr~~r~i~   73 (1012)
T KOG1445|consen    5 FAASKFKNTTPKVPKKEETIFDIPVGNLSCTNNGIHASADF--LAFNIEGEG---------GKLGVLPLTAKGRRTRDIG   73 (1012)
T ss_pred             cchhhcccCCCCCCchhhheeecccccccccCCCcccccce--EEEeecCCC---------ceEEEEeccccCccccccc
Confidence            77899999999999999888877766543333332222222  222221222         2333333322        2


Q ss_pred             CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE-----EEEecC-CCCcEEEEEccCCCCEEEEEeCCCcE
Q 004785          102 PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-----KVLHGH-RRTPWVVRFHPLNPTIIASGSLDHEV  174 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l-----~~l~gH-~~~V~sVafSP~dg~lLaSgS~DgtV  174 (730)
                      .|.+|...|+++.|+| +..+||+||.|..|+||.+..|-.-     ...-+| .-.|.++.|||....++++ +..|++
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s-~a~g~v  152 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILAS-GAHGSV  152 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEe-ccCceE
Confidence            4778999999999999 7779999999999999999754211     112234 3457899999955555555 557899


Q ss_pred             EEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCC-CeEEEEEccCCCeEE
Q 004785          175 RLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRR-SLRAVHFHPHAAPLL  251 (730)
Q Consensus       175 rLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~-~V~sVaFSPdG~~Ll  251 (730)
                      +|||+.+++.+..+ +|.+.|.+..|+.||.+|++++.++ |+|||.+.....  .....+|.+ .-..+.|-.+-.+|+
T Consensus       153 ~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~p--iQ~te~H~~~rdsRv~w~Gn~~rli  230 (1012)
T KOG1445|consen  153 YITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEP--IQTTEGHGGMRDSRVLWAGNWERLI  230 (1012)
T ss_pred             EEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCc--cccccccccchhheeeeccchhhhh
Confidence            99999999887775 5899999999999999999999666 999999876542  234456643 234566765555566


Q ss_pred             EEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       252 atgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      +++- .                  ......+.++|...- ...+.+..-+.+..++.|-|.||.+.+.+
T Consensus       231 sTGF-~------------------~~R~reV~~~Dtr~f-~~p~~tleld~stGvLiPl~DpDt~llfL  279 (1012)
T KOG1445|consen  231 STGF-T------------------TKRIREVRAYDTRKF-GAPVHTLELDSSTGVLIPLYDPDTRLLFL  279 (1012)
T ss_pred             hccc-c------------------hhhheeeeeeecccc-CCcceeEEeecccceEeeeecCCCceEEE
Confidence            5542 0                  001113333332211 11122223344667889999999988887

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.45  E-value=2.1e-12  Score=137.97  Aligned_cols=185  Identities=21%  Similarity=0.291  Sum_probs=146.4

Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-------E-EEecCCCCeEEEEEcCCCC-EEEEEE-CCe
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-------I-GSRDFYRPIASIAFHASGE-LLAVAS-GHK  213 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-------i-~~l~h~~~V~sVafSPdG~-~LAsgS-dd~  213 (730)
                      .+.||+++|..++|+|.+.+.++|||.|.+|.||++..+..       + ...+|...|.-+.|||.-. .|++++ |..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            45799999999999999999999999999999999976532       2 2346999999999999654 555555 667


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCC
Q 004785          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (730)
Q Consensus       214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~  288 (730)
                      |.+|++.+++...    ...|..-|+++.|+.||.++++++.     +||.+.+.....-..+.|..  +..++++.+  
T Consensus       156 v~iWnv~tgeali----~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k--~~Raifl~~--  227 (472)
T KOG0303|consen  156 VSIWNVGTGEALI----TLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK--PARAIFLAS--  227 (472)
T ss_pred             EEEEeccCCceee----ecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC--cceeEEecc--
Confidence            9999999998643    3459999999999999999999987     45555444433333444442  334555544  


Q ss_pred             CCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccCCC
Q 004785          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPS  351 (730)
Q Consensus       289 s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~~~  351 (730)
                                     ..++..+||.-+.|.+..++.........-+++++|.++.|+||+..+
T Consensus       228 ---------------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt  275 (472)
T KOG0303|consen  228 ---------------GKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT  275 (472)
T ss_pred             ---------------CceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence                           135578999999999999999999888999999999999999999866

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=1.8e-12  Score=140.36  Aligned_cols=176  Identities=18%  Similarity=0.208  Sum_probs=138.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE-EEEecC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL-KVLHGH  148 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH  148 (730)
                      .+....+..|+||+.|++|++||+.++    .+..|.+.|.++.|+| ....|++|+.|++|.+.|++..... ..++ -
T Consensus       250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~  328 (463)
T KOG0270|consen  250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-F  328 (463)
T ss_pred             HhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-e
Confidence            344567789999999999999999987    3667999999999999 6789999999999999999853222 2233 3


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEEec-CCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCcc
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREE  224 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~l~-h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~t~~~  224 (730)
                      .+.|-.++|+|.....++++..||+|+-+|++.. +++..+. |.+.|.++++++.-. +|++++.++ |++|++.....
T Consensus       329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            4668999999988889999999999999999975 7777764 999999999998665 677777555 99999976543


Q ss_pred             ccCCeEEecC---CCCeEEEEEccCCCeEEEEEe
Q 004785          225 TSSPRIVLRT---RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       225 ~~~~~~l~~h---~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..    ...|   -+...+.++.|+-.++++.++
T Consensus       409 ~~----v~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  409 KS----VKEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             cc----cccccccccceeecccCCCcceEEEecC
Confidence            11    2222   123677788888887777665

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.44  E-value=6e-12  Score=144.33  Aligned_cols=213  Identities=14%  Similarity=0.134  Sum_probs=172.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE---ecC
Q 004785           82 RGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL---HGH  148 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~----------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH  148 (730)
                      ..+.....+...+.|+....+          ++.-...+++++.++.|++.+.|...|+|-+|++++|-....|   ..|
T Consensus       413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah  492 (910)
T KOG1539|consen  413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH  492 (910)
T ss_pred             ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence            344445556668888876542          3334578999999999999999999999999999999988888   589


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~  227 (730)
                      .++|..++... -++.+++++.||-+++||..+...+..+.....+..+..+.....++.+.++. |+++|+.+.+.++ 
T Consensus       493 ~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR-  570 (910)
T KOG1539|consen  493 KGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR-  570 (910)
T ss_pred             cCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH-
Confidence            99999999987 78899999999999999999999888888889999999999999999998776 9999999988755 


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil  307 (730)
                        .+.+|.+.|++++|||||+++++++.+.                       .+.+||..++..+...    ....++.
T Consensus       571 --~f~gh~nritd~~FS~DgrWlisasmD~-----------------------tIr~wDlpt~~lID~~----~vd~~~~  621 (910)
T KOG1539|consen  571 --EFWGHGNRITDMTFSPDGRWLISASMDS-----------------------TIRTWDLPTGTLIDGL----LVDSPCT  621 (910)
T ss_pred             --HhhccccceeeeEeCCCCcEEEEeecCC-----------------------cEEEEeccCcceeeeE----ecCCcce
Confidence              7889999999999999999998877422                       2333443333222211    1345778


Q ss_pred             eeeEecCCCEEEEEecCC
Q 004785          308 RPSFVRDDERISLQHTEH  325 (730)
Q Consensus       308 ~p~FSpDg~rI~~~~~~~  325 (730)
                      ...|||.|..++..|-+.
T Consensus       622 sls~SPngD~LAT~Hvd~  639 (910)
T KOG1539|consen  622 SLSFSPNGDFLATVHVDQ  639 (910)
T ss_pred             eeEECCCCCEEEEEEecC
Confidence            899999999999866553

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.1e-11  Score=139.55  Aligned_cols=157  Identities=14%  Similarity=0.172  Sum_probs=111.9

Q ss_pred             CCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeE--EEEEecCCCCcEEEEEccCC
Q 004785           90 AESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLN  161 (730)
Q Consensus        90 DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~--l~~l~gH~~~V~sVafSP~d  161 (730)
                      +..|.+||.+..   .+..|...+....|||||++|+..+.+   ..|++||+.+++.  +..+.+|   ...++|+| +
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-D  258 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-D  258 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-C
Confidence            468999997654   366788889999999999999988754   4799999988864  3334443   44689999 7


Q ss_pred             CCEEEEE-eCCCcEE--EEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEEecCCC
Q 004785          162 PTIIASG-SLDHEVR--LWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRR  236 (730)
Q Consensus       162 g~lLaSg-S~DgtVr--LWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l~~h~~  236 (730)
                      ++.|+.+ +.++.+.  +||+.+++......+...+....|+|||+.|+..++  +...||+++......   ....+..
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC
Confidence            7766654 5677655  557777776666666667889999999998887774  447777765433211   1223333


Q ss_pred             CeEEEEEccCCCeEEEEEe
Q 004785          237 SLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       237 ~V~sVaFSPdG~~Llatgs  255 (730)
                        ....|+|||+++++++.
T Consensus       336 --~~~~~SpDG~~ia~~~~  352 (429)
T PRK01742        336 --YSAQISADGKTLVMING  352 (429)
T ss_pred             --CCccCCCCCCEEEEEcC
Confidence              45789999998877653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.43  E-value=1.7e-12  Score=135.33  Aligned_cols=190  Identities=17%  Similarity=0.264  Sum_probs=150.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~  160 (730)
                      ...|++..+++++..--  ...+.||...|..++-......+.+++.|.+.+||.+++|+|+..|.||.+.|++|+|++ 
T Consensus       124 tsrivssFk~~t~~~~l--vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-  200 (481)
T KOG0300|consen  124 TSRIVSSFKDGTVKFRL--VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-  200 (481)
T ss_pred             cchheeeecCCceeEee--hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-
Confidence            34566666666643221  125789999999999988777999999999999999999999999999999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEC------CC------------------------------CeEE-----EEecCCCCeEEEEE
Q 004785          161 NPTIIASGSLDHEVRLWNA------ST------------------------------AECI-----GSRDFYRPIASIAF  199 (730)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl------~t------------------------------g~~i-----~~l~h~~~V~sVaf  199 (730)
                      .+.++++++.|++..||..      ..                              +..+     ...+|...|.+..|
T Consensus       201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW  280 (481)
T KOG0300|consen  201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW  280 (481)
T ss_pred             ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence            9999999999999999962      11                              0001     11246777888889


Q ss_pred             cCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785          200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (730)
Q Consensus       200 SPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG  273 (730)
                      -..|+.+++++.++ ..+||+.+++.+.   .+.+|....+.++-+|..+.+++++.     +||++  +.......+.|
T Consensus       281 L~gg~Q~vTaSWDRTAnlwDVEtge~v~---~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQG  355 (481)
T KOG0300|consen  281 LAGGQQMVTASWDRTANLWDVETGEVVN---ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQG  355 (481)
T ss_pred             hcCcceeeeeeccccceeeeeccCceec---cccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecc
Confidence            99999999999555 9999999999766   78899999999999999996666554     77777  45556666777


Q ss_pred             cccCC
Q 004785          274 YWRYP  278 (730)
Q Consensus       274 ~~~~p  278 (730)
                      |....
T Consensus       356 HtdtV  360 (481)
T KOG0300|consen  356 HTDTV  360 (481)
T ss_pred             cccce
Confidence            76533

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.43  E-value=2.3e-12  Score=140.58  Aligned_cols=172  Identities=16%  Similarity=0.153  Sum_probs=142.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~~~V~s  154 (730)
                      ...++++|+..+.|++||++..    .+++|+..|+++.++-...+||+++..|.|.|..+.++.....|+.. ...|.-
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl  169 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL  169 (673)
T ss_pred             cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence            3478999999999999999854    58899999999999999999999999999999999999888888655 345668


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~  230 (730)
                      +.|+|....+|.+++.+|.|.+||+....++..+  .|..+...|+|+|... +|++.+ |.+|++||.+......    
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----  245 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----  245 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----
Confidence            9999966667788999999999999887777664  4888999999999877 555555 6679999998665433    


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...-..+...|+|+++|.+|+++..
T Consensus       246 ~l~y~~Plstvaf~~~G~~L~aG~s  270 (673)
T KOG4378|consen  246 RLTYSHPLSTVAFSECGTYLCAGNS  270 (673)
T ss_pred             eeeecCCcceeeecCCceEEEeecC
Confidence            2233457899999999998877654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.42  E-value=1.1e-11  Score=139.75  Aligned_cols=191  Identities=16%  Similarity=0.209  Sum_probs=148.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC---------C--------------------------------CCCCCCeEEEEECC
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP---------L--------------------------------SPPPRSTIAAAFSP  117 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~---------L--------------------------------~gH~~~Vt~lafSP  117 (730)
                      -....+++++.|++|++|++..|+         +                                -...-.+.+++.||
T Consensus       390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp  469 (1080)
T KOG1408|consen  390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP  469 (1080)
T ss_pred             CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence            356789999999999999987531         0                                12334689999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEcc--CCCCEEEEEeCCCcEEEEECCCCe-EEEEe-c----
Q 004785          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP--LNPTIIASGSLDHEVRLWNASTAE-CIGSR-D----  189 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP--~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~----  189 (730)
                      ||++||+|..-|+++|||+...+.+..+..|...|.|+.|+-  ...++|++++.|.-|.++|+...- +++++ +    
T Consensus       470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss  549 (1080)
T KOG1408|consen  470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS  549 (1080)
T ss_pred             CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence            999999999999999999999998999999999999999984  135789999999999999985321 00000 0    


Q ss_pred             ---------------------------------------------CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785          190 ---------------------------------------------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMRE  223 (730)
Q Consensus       190 ---------------------------------------------h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~  223 (730)
                                                                   .+..++.++..|..+++++++.++ |+|||+..++
T Consensus       550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence                                                         012467888899999999999655 9999999998


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~  269 (730)
                      ..+...-..+|.+....|...|.|-|+++++.     +.|+.++++.....
T Consensus       630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~  680 (1080)
T KOG1408|consen  630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT  680 (1080)
T ss_pred             eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence            76633333456778889999999999999887     45666666655444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=4.7e-11  Score=134.75  Aligned_cols=189  Identities=14%  Similarity=0.089  Sum_probs=146.8

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (730)
                      ...+|.......|+.+-.++.|.+|++...     .+.+ ..+.|.+++|+ ++..|++.+-+|.|.-||+.+++.+..+
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~  106 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI  106 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe
Confidence            344455556677999999999999999865     2334 45679999999 5667888889999999999999999999


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t  221 (730)
                      ..-.+.|++++.+| .+..++.|+.||.++++++..++....  +. .+++|.+++|+|++..|+.|+.|+ |++||+..
T Consensus       107 d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~  185 (691)
T KOG2048|consen  107 DSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS  185 (691)
T ss_pred             cCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence            99999999999999 889999999999888899888877655  33 458999999999999999999666 99999998


Q ss_pred             CccccCCe----EEec-CCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785          222 REETSSPR----IVLR-TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (730)
Q Consensus       222 ~~~~~~~~----~l~~-h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~  263 (730)
                      +.......    .+.. -..-|++|.|-.++. |+++.+     .||...+.
T Consensus       186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             CceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcc
Confidence            87643100    1111 233578888887776 555332     55554333

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.40  E-value=1.4e-11  Score=128.21  Aligned_cols=183  Identities=13%  Similarity=0.092  Sum_probs=137.7

Q ss_pred             CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCCeEEEEE
Q 004785           71 SQIFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSCLKVL  145 (730)
Q Consensus        71 s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg~~l~~l  145 (730)
                      ..+-..-.+++..+++++.|+.+++||+.+++   +..|.++|.++.|-+...  .|++||.|.+||.||.+...++.++
T Consensus        74 PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~  153 (347)
T KOG0647|consen   74 PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL  153 (347)
T ss_pred             CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence            34555567888999999999999999999884   668999999999988554  8999999999999999876544433


Q ss_pred             ec-------------------------------------C----CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785          146 HG-------------------------------------H----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (730)
Q Consensus       146 ~g-------------------------------------H----~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~  184 (730)
                      .-                                     +    +-.+.+|+..+ +.+..+.|+-.|.+-|..+..+..
T Consensus       154 ~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  154 QLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             eccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCc
Confidence            21                                     1    12356677777 666667788888888887776533


Q ss_pred             EEE--ec-CC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          185 IGS--RD-FY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       185 i~~--l~-h~---------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      ...  +. |.         ..|++|+|+|.-..|++++ |+.+.+||-+....+.   ....|..+|++..|+.+|.+++
T Consensus       233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk---~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK---TSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh---ccCcCCCccceeEecCCCCEEE
Confidence            222  21 22         2578899999877777766 6669999988776544   5567899999999999999776


Q ss_pred             EEEe-eC
Q 004785          252 LTAE-VN  257 (730)
Q Consensus       252 atgs-vw  257 (730)
                      -+.+ +|
T Consensus       310 YA~gYDW  316 (347)
T KOG0647|consen  310 YALGYDW  316 (347)
T ss_pred             EEeeccc
Confidence            5544 55

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.40  E-value=2.6e-11  Score=132.86  Aligned_cols=168  Identities=17%  Similarity=0.250  Sum_probs=137.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-------------
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-------------  141 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~-------------  141 (730)
                      ..+..+++|..+|.|.+|+..+++    ...|.+.|.+++.-.+|.+|- |+.|+.|..||- +.+.             
T Consensus       255 ~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~-~y~k~r~~elPe~~G~i  332 (626)
T KOG2106|consen  255 LENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD-NYRKLRETELPEQFGPI  332 (626)
T ss_pred             cCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccc-cccccccccCchhcCCe
Confidence            455678899999999999998763    348999999999999997665 999999999984 1110             


Q ss_pred             ----------------------------EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCC
Q 004785          142 ----------------------------LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP  193 (730)
Q Consensus       142 ----------------------------l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~  193 (730)
                                                  .....+|....+.++.+| ..+++++++.|+.++||+  ..+.+.......+
T Consensus       333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~  409 (626)
T KOG2106|consen  333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP  409 (626)
T ss_pred             eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCc
Confidence                                        112247888899999999 999999999999999999  6677777778889


Q ss_pred             eEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 004785          194 IASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (730)
Q Consensus       194 V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsv  256 (730)
                      +.++.|+|.| .||.|+ .+...|.|..+...+.    +.....+++.+.|+|+|.+++.++..
T Consensus       410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~----~~~d~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVT----IHTDNEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             eeEeeccCcc-eEEEeeccceEEEEecccceeEE----EEecCCceEEEEEcCCCCEEEEecCC
Confidence            9999999999 899998 5669999998865433    33338899999999999988777653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=6.8e-11  Score=133.06  Aligned_cols=218  Identities=16%  Similarity=0.123  Sum_probs=136.6

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL  165 (730)
                      .|.++|.+..   .+..+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+...+|+| +++.+
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~l  254 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTL  254 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence            4666666432   356778889999999999999988753   469999999887543 433445567899999 66555


Q ss_pred             -EEEeCCCcEEEE--ECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEc--CCCccccCCeEEecCCCCe
Q 004785          166 -ASGSLDHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRY--NMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       166 -aSgS~DgtVrLW--Dl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl--~t~~~~~~~~~l~~h~~~V  238 (730)
                       ++.+.++...||  |+.++.......+........|+|||+.|+..++  +...||.+  ..+...    .+.......
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~~  330 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSYN  330 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCCc
Confidence             567778775555  5555554444444555667899999998887774  33555544  443321    222223334


Q ss_pred             EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI  318 (730)
                      ....|+|||++++.+.....               .     ..+.+++...+....+... .    ....|.|+|||+.|
T Consensus       331 ~~~~~SpDG~~Ia~~s~~~g---------------~-----~~I~v~d~~~g~~~~lt~~-~----~~~~p~~spdg~~l  385 (427)
T PRK02889        331 TSPRISPDGKLLAYISRVGG---------------A-----FKLYVQDLATGQVTALTDT-T----RDESPSFAPNGRYI  385 (427)
T ss_pred             CceEECCCCCEEEEEEccCC---------------c-----EEEEEEECCCCCeEEccCC-C----CccCceECCCCCEE
Confidence            56789999999887654211               0     1345555444332222111 0    12368999999999


Q ss_pred             EEEecCCCCCcccceeecCCCcc
Q 004785          319 SLQHTEHDSGATRTQQSLRSSSS  341 (730)
Q Consensus       319 ~~~~~~~dsgs~~~~~~~~ss~~  341 (730)
                      ++..+... ...++..+.++...
T Consensus       386 ~~~~~~~g-~~~l~~~~~~g~~~  407 (427)
T PRK02889        386 LYATQQGG-RSVLAAVSSDGRIK  407 (427)
T ss_pred             EEEEecCC-CEEEEEEECCCCce
Confidence            99776543 23455555554333

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.39  E-value=3.3e-12  Score=137.06  Aligned_cols=145  Identities=22%  Similarity=0.357  Sum_probs=120.3

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCC---------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTG---------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       107 ~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg---------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      ..+|..+.|.++.. +|+||+.|..|+||-+..+         +.+..+..|...|+++.|+| ++++++||+.+|.|.+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL   91 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence            35799999999665 9999999999999988543         23456678999999999999 9999999999999999


Q ss_pred             EECC--------C-----C---eEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCe
Q 004785          177 WNAS--------T-----A---ECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       177 WDl~--------t-----g---~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      |-..        +     .   ...+. ..|...|..++|+||++++++++ ++.+++||+..+....   ....|...|
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv  168 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV  168 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence            9765        2     1   11112 34888999999999999999999 5669999999998655   678899999


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004785          239 RAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgs  255 (730)
                      ..++|.|-++++++-+.
T Consensus       169 qgvawDpl~qyv~s~s~  185 (434)
T KOG1009|consen  169 QGVAWDPLNQYVASKSS  185 (434)
T ss_pred             ceeecchhhhhhhhhcc
Confidence            99999999998776443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.39  E-value=1.4e-12  Score=142.30  Aligned_cols=173  Identities=14%  Similarity=0.118  Sum_probs=146.6

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ..-+.+..+++..||.|.+||+...    +|.||++.+.||.+++||..|-+|+-|.+|+-||+++++.+.... ....|
T Consensus       517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQI  595 (705)
T KOG0639|consen  517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQI  595 (705)
T ss_pred             cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhh
Confidence            3446677889999999999999875    689999999999999999999999999999999999988765543 34569


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEE
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIV  231 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l  231 (730)
                      .++..+| .+++++.|-.++.|.|......+......|..-|.++.|.+.|+++++.+.+. +..|...-+..+-    .
T Consensus       596 fSLg~cP-~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF----q  670 (705)
T KOG0639|consen  596 FSLGYCP-TGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF----Q  670 (705)
T ss_pred             eecccCC-CccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee----e
Confidence            9999999 99999999999999998887777666677999999999999999999888555 9999887775422    3


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ......|.++.+|-|.++|+++++
T Consensus       671 skE~SsVlsCDIS~ddkyIVTGSG  694 (705)
T KOG0639|consen  671 SKESSSVLSCDISFDDKYIVTGSG  694 (705)
T ss_pred             ccccCcceeeeeccCceEEEecCC
Confidence            345678999999999998877654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.36  E-value=3e-11  Score=135.42  Aligned_cols=182  Identities=14%  Similarity=0.190  Sum_probs=127.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe------------
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS------------  140 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~------------  140 (730)
                      +...|++.+.|.+++.||++..+      +.||.+.|.+++|.| |...|++|+.||.|.|||++-..            
T Consensus       111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~  190 (720)
T KOG0321|consen  111 GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY  190 (720)
T ss_pred             CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence            77799999999999999998752      679999999999999 56689999999999999984321            


Q ss_pred             ---------------EEEEEecCCCCcEE---EEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEEec---------C--
Q 004785          141 ---------------CLKVLHGHRRTPWV---VRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD---------F--  190 (730)
Q Consensus       141 ---------------~l~~l~gH~~~V~s---VafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~l~---------h--  190 (730)
                                     .+...+.|...|.+   +-+.. |...|++++. |+.|++||+++.......+         +  
T Consensus       191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk  269 (720)
T KOG0321|consen  191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK  269 (720)
T ss_pred             ccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence                           11122334444444   44445 7888998887 9999999999865433211         2  


Q ss_pred             -CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCC--eEEEEEccCCCeEEEEEe-----eCCccC
Q 004785          191 -YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRS--LRAVHFHPHAAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       191 -~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~--V~sVaFSPdG~~Llatgs-----vwdl~s  261 (730)
                       ...+.++..+..|.+|++.+ |+.|++|++....... ...+.++...  -..-..+||+.+++.+..     +|.+..
T Consensus       270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence             23567788888888766555 7779999998765422 2223333221  122347899998887665     666664


Q ss_pred             CC
Q 004785          262 SE  263 (730)
Q Consensus       262 ~~  263 (730)
                      ..
T Consensus       349 ~e  350 (720)
T KOG0321|consen  349 PE  350 (720)
T ss_pred             cc
Confidence            33

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=2e-11  Score=132.71  Aligned_cols=175  Identities=14%  Similarity=0.152  Sum_probs=141.0

Q ss_pred             cCCC-EEEEEeCCCeEEEEeCCCCC------CCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           79 DARR-GLASWVEAESLHHLRPKYCP------LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        79 d~g~-~L~Sgs~DgsIrlWd~~t~~------L~gH~-~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ..|. .+++++..+-...||+.+.+      +.++. ..+.....|+++++|+..+..|.|.|....+++.+..++ -.+
T Consensus       267 p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG  345 (514)
T KOG2055|consen  267 PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEG  345 (514)
T ss_pred             CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-ecc
Confidence            3455 88888888899999998763      33443 457788999999999999999999999999999998887 457


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCe--EEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V--~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~  227 (730)
                      .|..+.|+. +++.|+.++.+|.|.+||++...++..+...+.|  ++++.+++|.+||+|++.+ |.|||.++......
T Consensus       346 ~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  346 VVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence            799999998 8888888899999999999999999998777766  4566779999999999877 99999765432221


Q ss_pred             C---eEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          228 P---RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       228 ~---~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +   ..+..-...|+++.|++|+..|+.++.
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~  455 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASR  455 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence            2   223334668999999999997766654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=5e-11  Score=124.49  Aligned_cols=169  Identities=18%  Similarity=0.225  Sum_probs=133.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      .+..|...+-||++++||.....   .-.|..++.+++|.+ ...+++|+-||.|+++|+.++.. ..+..|...|.+|.
T Consensus        24 ~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~  101 (323)
T KOG1036|consen   24 SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIE  101 (323)
T ss_pred             cCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEE
Confidence            44556666689999999988764   336899999999986 56889999999999999998874 45567999999999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCC
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                      .++ ....+++|+.|++|++||.+.......+.....|.++..  .|+.|++|+.+ .|.+||+++..... ......-.
T Consensus       102 ~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~lk  177 (323)
T KOG1036|consen  102 YSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESSLK  177 (323)
T ss_pred             eec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-hhccccce
Confidence            999 889999999999999999998666666777778887765  47788887755 59999999876532 11222345


Q ss_pred             CCeEEEEEccCCCeEEEEE
Q 004785          236 RSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Llatg  254 (730)
                      -.+++|++-|++.-+++++
T Consensus       178 yqtR~v~~~pn~eGy~~sS  196 (323)
T KOG1036|consen  178 YQTRCVALVPNGEGYVVSS  196 (323)
T ss_pred             eEEEEEEEecCCCceEEEe
Confidence            6789999999776555544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.35  E-value=2.4e-10  Score=126.91  Aligned_cols=203  Identities=15%  Similarity=0.135  Sum_probs=135.7

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-E
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-I  164 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-l  164 (730)
                      .|.++|....   .+..+...+...+|+|||++|+.++.+   ..|++||+.+++... +..+.+.+..++|+| +++ +
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l  248 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKL  248 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence            5777776543   355677779999999999999988654   489999999886543 344556677899999 665 4


Q ss_pred             EEEEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCCe
Q 004785          165 IASGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       165 LaSgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      +++.+.++  .|++||+.+++......+........|+|||+.|+..++.    .|++||+.+++..    .+..+...+
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~  324 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN  324 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence            45555544  5999999988766555555555678999999988877642    3888888765432    234445667


Q ss_pred             EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI  318 (730)
                      ..+.|+|+|++++.+.....    .                ..+.+.+........+...     .....|.|+||++.|
T Consensus       325 ~~~~~spdg~~i~~~~~~~~----~----------------~~i~~~d~~~~~~~~l~~~-----~~~~~p~~spdg~~l  379 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGG----G----------------FNIAVMDLDGGGERVLTDT-----GLDESPSFAPNGRMI  379 (417)
T ss_pred             cCeEECCCCCEEEEEEccCC----c----------------eEEEEEeCCCCCeEEccCC-----CCCCCceECCCCCEE
Confidence            78899999998887764220    0                1233344333221111111     012357899999999


Q ss_pred             EEEecCC
Q 004785          319 SLQHTEH  325 (730)
Q Consensus       319 ~~~~~~~  325 (730)
                      ++....+
T Consensus       380 ~~~~~~~  386 (417)
T TIGR02800       380 LYATTRG  386 (417)
T ss_pred             EEEEeCC
Confidence            9866644

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.35  E-value=3.7e-11  Score=131.32  Aligned_cols=172  Identities=16%  Similarity=0.244  Sum_probs=144.0

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCC-CCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEE-ecCCC
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPP-PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVL-HGHRR  150 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH-~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~  150 (730)
                      .....+|++++..|.|.+....++    +|... ...|.-+.|++..+ +|.+++++|.|.+||+....++..+ +.|..
T Consensus       130 N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA  209 (673)
T KOG4378|consen  130 NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA  209 (673)
T ss_pred             cCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence            346778999999999999998876    34333 34567999999655 6778899999999999887776554 67999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCe
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPR  229 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~  229 (730)
                      +...|+|+|.+..+|++.+.|..|.+||++..+....+....+...++|.++|.+|+.|+. ++|..||++..+.  ...
T Consensus       210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~  287 (673)
T KOG4378|consen  210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PVA  287 (673)
T ss_pred             CcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCC--Cce
Confidence            9999999998889999999999999999998888888888889999999999999999985 5599999998765  445


Q ss_pred             EEecCCCCeEEEEEccCCCeEEE
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      .+..|...|++|+|-+.- .++.
T Consensus       288 v~sah~~sVt~vafq~s~-tvlt  309 (673)
T KOG4378|consen  288 VRSAHDASVTRVAFQPSP-TVLT  309 (673)
T ss_pred             EeeecccceeEEEeeecc-eeee
Confidence            778899999999998875 3444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4e-10  Score=126.46  Aligned_cols=221  Identities=13%  Similarity=0.105  Sum_probs=140.5

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL  165 (730)
                      .|.++|.+..   .+..+...+....|||||+.|+..+.+   ..|++||+.+++... +....+.+...+|+| +++.+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKL  257 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEE
Confidence            3666776544   355677789999999999999887654   469999999886533 333344556789999 66655


Q ss_pred             E-EEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCCe
Q 004785          166 A-SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       166 a-SgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      + +.+.++  .|++||+.+++......+........|+|||+.|+..++.    .|+++|+.+++...    +.......
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~  333 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYN  333 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCc
Confidence            4 555555  6888999988776655555566778999999988877742    28888887765322    22122233


Q ss_pred             EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI  318 (730)
                      ....|+|||++++.+.....    .                ..+.+.+..++....+. ...    ....|.|+|||+.|
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~----~----------------~~l~~~dl~tg~~~~lt-~~~----~~~~p~~spdg~~i  388 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDG----N----------------FHVAAQDLQRGSVRILT-DTS----LDESPSVAPNGTML  388 (430)
T ss_pred             cceEECCCCCEEEEEEccCC----c----------------eEEEEEECCCCCEEEcc-CCC----CCCCceECCCCCEE
Confidence            45789999998887753211    0                02344443333222221 110    11257899999999


Q ss_pred             EEEecCCCCCcccceeecCCCcceee
Q 004785          319 SLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       319 ~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                      ++...... ...++..+.++....+|
T Consensus       389 ~~~~~~~g-~~~l~~~~~~g~~~~~l  413 (430)
T PRK00178        389 IYATRQQG-RGVLMLVSINGRVRLPL  413 (430)
T ss_pred             EEEEecCC-ceEEEEEECCCCceEEC
Confidence            98665432 23456666654444344

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=1.4e-10  Score=123.51  Aligned_cols=160  Identities=18%  Similarity=0.216  Sum_probs=135.6

Q ss_pred             cceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeC--CCeEE
Q 004785           62 TARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHG--DHTVK  132 (730)
Q Consensus        62 ~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPDG~~LaSgS~--DgtVr  132 (730)
                      ....|...|...+.+++-++++|+..-++. |.+||+++-+       ...+...+.++.++.++.+||.=+.  .|.|.
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             CceEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            334567778888888888999999888776 9999998753       2256777888888888889987543  68999


Q ss_pred             EEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-EEEEECCCCeEEEEecC---CCCeEEEEEcCCCCEEEE
Q 004785          133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRDF---YRPIASIAFHASGELLAV  208 (730)
Q Consensus       133 VWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~i~~l~h---~~~V~sVafSPdG~~LAs  208 (730)
                      |||+.+-+.+..+..|++.+-+++|++ +|.++||+|..|+ ||++.+.+|+.+..+.-   ...|.+++|+||+++|++
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence            999999999999999999999999999 9999999999998 78999999999888753   347899999999999998


Q ss_pred             EEC-CeEEEEEcCCCc
Q 004785          209 ASG-HKLYIWRYNMRE  223 (730)
Q Consensus       209 gSd-d~I~VWDl~t~~  223 (730)
                      .++ ++|+||.+.+..
T Consensus       236 sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVS  251 (391)
T ss_pred             ecCCCeEEEEEecccc
Confidence            885 559999987765

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=1.3e-11  Score=136.98  Aligned_cols=176  Identities=14%  Similarity=0.202  Sum_probs=140.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------  138 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-------  138 (730)
                      -.....|++++.|++|++|+++..            ++.+|.++|.|++.++++..+++|+.||+|+.|++..       
T Consensus       303 ~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds  382 (577)
T KOG0642|consen  303 HPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS  382 (577)
T ss_pred             CCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc
Confidence            345678999999999999998321            4779999999999999999999999999999996531       


Q ss_pred             C---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-------------------------------
Q 004785          139 G---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-------------------------------  184 (730)
Q Consensus       139 g---~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-------------------------------  184 (730)
                      .   .....|.||++.|+.+++|+ ..+.|++++.||+|++|+......                               
T Consensus       383 ~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  383 YDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF  461 (577)
T ss_pred             cCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccc
Confidence            1   22356789999999999999 888899999999999998765432                               


Q ss_pred             -------------EEEec--------CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004785          185 -------------IGSRD--------FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (730)
Q Consensus       185 -------------i~~l~--------h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (730)
                                   +..+.        ....++-+.++|.+.+.+++-.+. |+++|..++..+.   ....|...+++++
T Consensus       462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~---s~~a~~~svtsla  538 (577)
T KOG0642|consen  462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH---SMVAHKDSVTSLA  538 (577)
T ss_pred             ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch---heeeccceeccee
Confidence                         00000        012456788899998888888555 9999999988644   5677889999999


Q ss_pred             EccCCCeEEEEEeeC
Q 004785          243 FHPHAAPLLLTAEVN  257 (730)
Q Consensus       243 FSPdG~~Llatgsvw  257 (730)
                      +.|+|.++++.....
T Consensus       539 i~~ng~~l~s~s~d~  553 (577)
T KOG0642|consen  539 IDPNGPYLMSGSHDG  553 (577)
T ss_pred             ecCCCceEEeecCCc
Confidence            999999888776533

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=2e-11  Score=131.83  Aligned_cols=183  Identities=21%  Similarity=0.193  Sum_probs=136.6

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEe-CCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLR-PKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-  146 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd-~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-  146 (730)
                      ...++..-++..+++|..||++|+|+ ....   ....|.+.|.++.|||||++|++-+.| ..+||++++|..+.... 
T Consensus       147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            35556666789999999999999999 4333   356899999999999999999999999 99999999997665553 


Q ss_pred             -cCCCCcEEEEEccCCC-----CEEEEEeCCCcEEEEECCCCeE------EEEecCCCCeEEEEEcCCCCEEEEEE-CCe
Q 004785          147 -GHRRTPWVVRFHPLNP-----TIIASGSLDHEVRLWNASTAEC------IGSRDFYRPIASIAFHASGELLAVAS-GHK  213 (730)
Q Consensus       147 -gH~~~V~sVafSP~dg-----~lLaSgS~DgtVrLWDl~tg~~------i~~l~h~~~V~sVafSPdG~~LAsgS-dd~  213 (730)
                       .-......+.|+- ++     .+++....-+.|+.||+...+.      .+.......|.+++.++||+++|.|+ ++.
T Consensus       226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs  304 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS  304 (398)
T ss_pred             cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence             1223355678877 44     2333344556677777654322      11123445799999999999999999 555


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004785          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwd  258 (730)
                      |-|++..+-+...  .....|...|+.|.|+||.++++..+..|.
T Consensus       305 Vai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~  347 (398)
T KOG0771|consen  305 VAIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNE  347 (398)
T ss_pred             EEEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCc
Confidence            9999988776543  344568889999999999998887665543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=4.8e-10  Score=127.10  Aligned_cols=221  Identities=16%  Similarity=0.119  Sum_probs=137.5

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL  165 (730)
                      .|.++|....   .+..+...+....|||||++|+..+.+   ..|++||+.+++... +....+.....+|+| +++.|
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKL  276 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEE
Confidence            4566665433   355667788999999999999887653   368999998887532 322233345789999 66644


Q ss_pred             -EEEeCCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEEecCCCCe
Q 004785          166 -ASGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       166 -aSgS~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                       ++.+.++.  |++||+.+++......+.......+|+|||++|+..++  +.  |+++|+.+++...    +.......
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~  352 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN  352 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence             55666664  88889988876665555556678899999998888774  22  7888887665322    22222233


Q ss_pred             EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785          239 RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI  318 (730)
                      ....|+|||++++.+......                    ..+...+..++....+...     .....|.|+|||+.|
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~--------------------~~I~~~dl~~g~~~~lt~~-----~~d~~ps~spdG~~I  407 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGK--------------------FNIARQDLETGAMQVLTST-----RLDESPSVAPNGTMV  407 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCc--------------------eEEEEEECCCCCeEEccCC-----CCCCCceECCCCCEE
Confidence            457899999988876542110                    0222233222221111111     012257899999999


Q ss_pred             EEEecCCCCCcccceeecCCCcceee
Q 004785          319 SLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       319 ~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                      ++....+. ...++..+.++....++
T Consensus       408 ~~~~~~~g-~~~l~~~~~~G~~~~~l  432 (448)
T PRK04792        408 IYSTTYQG-KQVLAAVSIDGRFKARL  432 (448)
T ss_pred             EEEEecCC-ceEEEEEECCCCceEEC
Confidence            98665432 23456666554444443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.5e-10  Score=120.83  Aligned_cols=169  Identities=19%  Similarity=0.196  Sum_probs=130.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC---------C
Q 004785           79 DARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT---------G  139 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~t---------g  139 (730)
                      --|+++++++.|++|++||.+..        ..+.|.+.|..+.|.+  =|+.+|+++.|++|.||.-..         .
T Consensus        23 ~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~W  102 (361)
T KOG2445|consen   23 FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRW  102 (361)
T ss_pred             ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccccee
Confidence            37899999999999999996532        3678999999999987  599999999999999997521         1


Q ss_pred             eEEEEEecCCCCcEEEEEccCC-CCEEEEEeCCCcEEEEECCCCe------EEEEec--------CCCCeEEEEEcCC--
Q 004785          140 SCLKVLHGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAE------CIGSRD--------FYRPIASIAFHAS--  202 (730)
Q Consensus       140 ~~l~~l~gH~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~tg~------~i~~l~--------h~~~V~sVafSPd--  202 (730)
                      .....+...+..|+.|.|.|.. +-.+++++.||.||||+.-.--      .+..+.        +.....|+.|+|.  
T Consensus       103 v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~  182 (361)
T KOG2445|consen  103 VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM  182 (361)
T ss_pred             EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence            2445677788899999999943 4468889999999999876432      222222        5567789999974  


Q ss_pred             -CCEEEEEECC------eEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCC
Q 004785          203 -GELLAVASGH------KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHA  247 (730)
Q Consensus       203 -G~~LAsgSdd------~I~VWDl~t~~-~~~~~~~l~~h~~~V~sVaFSPdG  247 (730)
                       ..+||+|++.      +++||...... .......+.+|..+|++++|.|+-
T Consensus       183 ~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~  235 (361)
T KOG2445|consen  183 HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI  235 (361)
T ss_pred             cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc
Confidence             3589999976      59999886654 323344566899999999999963

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=4.1e-11  Score=126.53  Aligned_cols=182  Identities=17%  Similarity=0.238  Sum_probs=139.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEE--EecCC-CCc
Q 004785           82 RGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKV--LHGHR-RTP  152 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~--l~gH~-~~V  152 (730)
                      ..++.+...++|++||..++    .+++|+..++.+.|..  ....+.+|+.||+|++||+++......  +..|. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            56778888999999999885    5789999999999987  467899999999999999998665543  45555 355


Q ss_pred             EEEEEccCCCCEEEEEe----CCCcEEEEECCCCeE-EEEe--cCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCc
Q 004785          153 WVVRFHPLNPTIIASGS----LDHEVRLWNASTAEC-IGSR--DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMRE  223 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS----~DgtVrLWDl~tg~~-i~~l--~h~~~V~sVafSPdG-~~LAsgSdd~-I~VWDl~t~~  223 (730)
                      .+++.+- .++++++|.    .|-.|.+||++..+. +..+  .|.+.|+++.|+|.. ++|++||-++ |.|||+....
T Consensus       121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            6666665 677888775    366799999998766 5444  389999999999965 5999999555 9999998876


Q ss_pred             cccCCeEEecCCCCeEEEEEccCC--CeEEEEE----eeCCccCCCc
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHA--APLLLTA----EVNDLDSSES  264 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG--~~Llatg----svwdl~s~~~  264 (730)
                      +...+.....+...|..+.|..++  +.+..+-    .+|++..++.
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            655455567788899999999988  5332221    1666665443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=2.9e-11  Score=126.46  Aligned_cols=145  Identities=17%  Similarity=0.175  Sum_probs=113.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec
Q 004785          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD  189 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~  189 (730)
                      ..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|.+++|++ +++.|+|+|.|..|.+||+..|.+++.+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            78999999999999999999999999999988889999999999999999 99999999999999999999999999999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEEec-CCCCeEEEEEccCCCeEEEEEe
Q 004785          190 FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       190 h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l~~-h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +..+|..+.|+|..+-.++++  +..-.+-++..+.....+..-.+ -+..-.+..|.+.|++++++.+
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts  173 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS  173 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence            999999999999665444443  55555555544322110000000 0112233469999998887654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.28  E-value=2.6e-09  Score=115.37  Aligned_cols=173  Identities=14%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             EEeCCCeEEEEeCCC-CCC-----CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECC-CCeE--EEEEecCCCCcEEE
Q 004785           86 SWVEAESLHHLRPKY-CPL-----SPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQ-TGSC--LKVLHGHRRTPWVV  155 (730)
Q Consensus        86 Sgs~DgsIrlWd~~t-~~L-----~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~-tg~~--l~~l~gH~~~V~sV  155 (730)
                      +...++.|.+|++.+ +++     ..+.+....++++||+++|++++. ++.|.+|++. +++.  +.... ..+....+
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i   85 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHI   85 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEE
Confidence            335678899999853 321     134456788999999999877754 7889999986 3432  22222 33457789


Q ss_pred             EEccCCCCEEEEEe-CCCcEEEEECCC-C---eEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccC-
Q 004785          156 RFHPLNPTIIASGS-LDHEVRLWNAST-A---ECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSS-  227 (730)
Q Consensus       156 afSP~dg~lLaSgS-~DgtVrLWDl~t-g---~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~-  227 (730)
                      +|+| +++++++++ .++.|.+||+.+ +   +.+..+........++|+|+|++|++++  ++.|.+||+++...+.. 
T Consensus        86 ~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         86 STDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            9999 777776665 488999999974 3   2233333444567889999999998777  35599999976432210 


Q ss_pred             --CeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcc
Q 004785          228 --PRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (730)
Q Consensus       228 --~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~  260 (730)
                        ...........+.+.|+|||++++++..      +|+++
T Consensus       165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence              0111122445788999999998877654      55655

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=9.8e-11  Score=127.65  Aligned_cols=168  Identities=13%  Similarity=0.128  Sum_probs=136.5

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCC-------------CCCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCe
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKY-------------CPLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS  140 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t-------------~~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~  140 (730)
                      ...+++..|+++++|+.|.+|++..             ..+..|.-+|+++...+-  ..+|+|+|.|.++++||+..|.
T Consensus       130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~  209 (476)
T KOG0646|consen  130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV  209 (476)
T ss_pred             EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence            3567999999999999999998742             146789999999998874  3589999999999999999999


Q ss_pred             EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----------------EEEE-ecCCC--CeEEEEEcC
Q 004785          141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----------------CIGS-RDFYR--PIASIAFHA  201 (730)
Q Consensus       141 ~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----------------~i~~-l~h~~--~V~sVafSP  201 (730)
                      .+.++.- ...+.+++.+| .+..++.|+.+|.|.+.++.+-.                .+.. .+|.+  .|++++.+-
T Consensus       210 LLlti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~  287 (476)
T KOG0646|consen  210 LLLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST  287 (476)
T ss_pred             eeEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence            8888763 45699999999 99999999999999998875422                1111 24655  999999999


Q ss_pred             CCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004785          202 SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       202 dG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~  248 (730)
                      ||.+|++|+ |++|.|||+...+.++   .+....++|+.+.+.|--+
T Consensus       288 DgtlLlSGd~dg~VcvWdi~S~Q~iR---tl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  288 DGTLLLSGDEDGKVCVWDIYSKQCIR---TLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             CccEEEeeCCCCCEEEEecchHHHHH---HHhhhccccceeEeecccc
Confidence            999999999 5569999999888765   3333567888888866543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=5.5e-11  Score=129.36  Aligned_cols=210  Identities=18%  Similarity=0.166  Sum_probs=152.9

Q ss_pred             CCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC---CCCC
Q 004785           32 NSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPR  108 (730)
Q Consensus        32 sSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~---gH~~  108 (730)
                      ..+|-++|.+...+..........+..            +...+.++..+..|+..+..|-|.+...+++.+.   .-.+
T Consensus       278 rrky~ysyDle~ak~~k~~~~~g~e~~------------~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG  345 (514)
T KOG2055|consen  278 RRKYLYSYDLETAKVTKLKPPYGVEEK------------SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG  345 (514)
T ss_pred             cceEEEEeeccccccccccCCCCcccc------------hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc
Confidence            456777777765554443322222210            1223444456668888889999999998887543   2467


Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE--EEEEccCCCCEEEEEeCCCcEEEEECCC-----
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSLDHEVRLWNAST-----  181 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~--sVafSP~dg~lLaSgS~DgtVrLWDl~t-----  181 (730)
                      .|..++|+.|++.|+..+.+|.|++||++...++..+.... .|.  +++.++ ++.+||+|+..|.|.|||..+     
T Consensus       346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-ccceeeeeecC-CCceEEeccCcceEEEeccchhhccC
Confidence            89999999999999999999999999999999999987443 343  566678 889999999999999999764     


Q ss_pred             -CeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          182 -AECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       182 -g~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       .++++.+. ....|+++.|++|+++||.+|.   +.+++-.+.....-.........-..|++++|||.|-+++.+..
T Consensus       424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe  502 (514)
T KOG2055|consen  424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE  502 (514)
T ss_pred             CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence             24444443 5678999999999999999984   34999888776543322222333457999999999998776644

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.27  E-value=2.5e-11  Score=137.11  Aligned_cols=191  Identities=19%  Similarity=0.322  Sum_probs=143.9

Q ss_pred             eeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCe-----EEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEE
Q 004785           55 SKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAES-----LHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLAST  125 (730)
Q Consensus        55 ~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~Dgs-----IrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSg  125 (730)
                      ...+|...-..+.+.+.....+....+..+++..+...     |++|+..+-    .|.+|.-.|+-++|||||++|++.
T Consensus       511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsv  590 (764)
T KOG1063|consen  511 QNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSV  590 (764)
T ss_pred             HhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEe
Confidence            34556665555666666666777778888888877654     899997653    589999999999999999999999


Q ss_pred             eCCCeEEEEECCCCe----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC--eEEEE---ecCCCCeEE
Q 004785          126 HGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGS---RDFYRPIAS  196 (730)
Q Consensus       126 S~DgtVrVWDl~tg~----~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~i~~---l~h~~~V~s  196 (730)
                      +.|+++.+|......    .....+.|+.-|+...|+| ++.+|+|+|.|++|++|.....  +.+..   +.+...|+.
T Consensus       591 sRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA  669 (764)
T KOG1063|consen  591 SRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA  669 (764)
T ss_pred             ecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence            999999999875432    2234688999999999999 8899999999999999999887  44433   468889999


Q ss_pred             EEEcCC-----CCEEEEEEC-CeEEEEEcCCCcccc---------CCeEEecCCCCeEEEEEccC
Q 004785          197 IAFHAS-----GELLAVASG-HKLYIWRYNMREETS---------SPRIVLRTRRSLRAVHFHPH  246 (730)
Q Consensus       197 VafSPd-----G~~LAsgSd-d~I~VWDl~t~~~~~---------~~~~l~~h~~~V~sVaFSPd  246 (730)
                      ++|.|-     +..+++|-. +.|.||.........         .......|...|+.+.|.|.
T Consensus       670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            999872     236677764 559999865221110         11123345677888999875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=2.7e-10  Score=114.55  Aligned_cols=140  Identities=19%  Similarity=0.273  Sum_probs=117.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--------CCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--------PLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--------~L~g---H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ++-.+++|+.|++|+.||+...        .+.+   ....|.+++..|.|++|++|..|....+||++.++.++.|..|
T Consensus       193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph  272 (350)
T KOG0641|consen  193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH  272 (350)
T ss_pred             cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence            5678889999999999998743        1221   2357999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-----EEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-----CIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYN  220 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-----~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~  220 (730)
                      ...|.++.|+| +..++++++.|..|++-|+...-     .+..-+|++.+..+.|+|..--+++.+ |.++.+|-++
T Consensus       273 sadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  273 SADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999 99999999999999999997421     122346889999999999877666666 5559999764

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.27  E-value=3e-10  Score=119.26  Aligned_cols=218  Identities=16%  Similarity=0.195  Sum_probs=157.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-C--eEEEEEe
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-G--SCLKVLH  146 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g--~~l~~l~  146 (730)
                      -..++..++.+.+...|.+|.....       ++..|...|++++|+|..+.|++++.|..-+||.... +  ++...+.
T Consensus        18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl   97 (361)
T KOG1523|consen   18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL   97 (361)
T ss_pred             ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE
Confidence            3456777888888888999886543       4788999999999999999999999999999999833 3  4556677


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYN  220 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-----l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~  220 (730)
                      .+.+..++|.|+| .++.|++|+....|.||-+....--..     ..+...|.++.|+|++-+|+.|+ |.+.+||..-
T Consensus        98 RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay  176 (361)
T KOG1523|consen   98 RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY  176 (361)
T ss_pred             EeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe
Confidence            7899999999999 999999999999999998876543322     34677899999999999999998 5567777542


Q ss_pred             CCccccCC---------------eEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEe
Q 004785          221 MREETSSP---------------RIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMA  285 (730)
Q Consensus       221 t~~~~~~~---------------~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~  285 (730)
                      -......+               .......+.|..+.|+|+|..|+..+..                       ..+.+.
T Consensus       177 IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd-----------------------s~v~~~  233 (361)
T KOG1523|consen  177 IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD-----------------------STVSFV  233 (361)
T ss_pred             eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC-----------------------CceEEe
Confidence            21110000               0111346789999999999988765431                       234444


Q ss_pred             cCCCCCC--CCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          286 GAHSSSH--PGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       286 d~~s~d~--~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      +...+..  ..+..    ..+|.+...|-.+...+.++.
T Consensus       234 da~~p~~~v~~~~~----~~lP~ls~~~ise~~vv~ag~  268 (361)
T KOG1523|consen  234 DAAGPSERVQSVAT----AQLPLLSVSWISENSVVAAGY  268 (361)
T ss_pred             ecCCCchhccchhh----ccCCceeeEeecCCceeecCC
Confidence            4333331  11111    236777777777777776533

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=8.8e-11  Score=129.71  Aligned_cols=154  Identities=18%  Similarity=0.197  Sum_probs=120.1

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCC-CCEEEEEeCCCcEEEEEC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl  179 (730)
                      .|.||++.|+|++|+.||.+|++||+|..+.|||.-..+.+..+ .||.+.|.++.|-|.. ..++++|..|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            58999999999999999999999999999999999888888777 6899999999999843 457889999999999999


Q ss_pred             CCCeE----------EEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCCccccCC-------eEEecCCCCeE
Q 004785          180 STAEC----------IGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMREETSSP-------RIVLRTRRSLR  239 (730)
Q Consensus       180 ~tg~~----------i~~l-~h~~~V~sVafSPdG-~~LAsgS-dd~I~VWDl~t~~~~~~~-------~~l~~h~~~V~  239 (730)
                      ...+.          ...+ .|...|..++-.|++ ..+.+++ |+.|+-+|++........       .......-...
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             ccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheee
Confidence            85221          1112 377888999999999 5677777 555999999875432100       01111123567


Q ss_pred             EEEEccCCCeEEEEEe
Q 004785          240 AVHFHPHAAPLLLTAE  255 (730)
Q Consensus       240 sVaFSPdG~~Llatgs  255 (730)
                      ++..+|...++++.+.
T Consensus       205 ~ltisp~rp~~laVGg  220 (758)
T KOG1310|consen  205 CLTISPSRPYYLAVGG  220 (758)
T ss_pred             eeeecCCCCceEEecC
Confidence            8999999988887776

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.27  E-value=4.2e-10  Score=117.36  Aligned_cols=166  Identities=30%  Similarity=0.399  Sum_probs=134.3

Q ss_pred             EEEEEeC-CCeEEEEeCCC--C---CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           83 GLASWVE-AESLHHLRPKY--C---PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        83 ~L~Sgs~-DgsIrlWd~~t--~---~L~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      .+..... |+.+.+|+...  .   .+..|...|.+++|+|+++.+++++. |+.+++|++..++.+..+.+|...|.++
T Consensus       125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  204 (466)
T COG2319         125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL  204 (466)
T ss_pred             EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence            3444344 88999999886  2   57799999999999999999999886 9999999999989999999999999999


Q ss_pred             EEccCCCC-EEEEEeCCCcEEEEECCCCeEEE-Ee-cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEE
Q 004785          156 RFHPLNPT-IIASGSLDHEVRLWNASTAECIG-SR-DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       156 afSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~-~l-~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l  231 (730)
                      +|+| ++. ++++++.|+.|++||...+..+. .+ .|.... ...|+|++.++++++. +.+++||.......  ....
T Consensus       205 ~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~  280 (466)
T COG2319         205 AFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTL  280 (466)
T ss_pred             EEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEE
Confidence            9998 665 66666999999999999887776 33 355554 3389999988887774 45999999877641  1223


Q ss_pred             ecCCCCeEEEEEccCCCeEEE
Q 004785          232 LRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      ..|...|..+.|+|++..+++
T Consensus       281 ~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         281 SGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             ecCCccEEEEEECCCCCEEEE
Confidence            577899999999998887776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.26  E-value=4.8e-10  Score=113.29  Aligned_cols=142  Identities=18%  Similarity=0.270  Sum_probs=98.8

Q ss_pred             EEEEECCCCCEEEEEeC----------CCeEEEEECCC-CeEEEEEec-CCCCcEEEEEccCCCCEEEE--EeCCCcEEE
Q 004785          111 IAAAFSPDGKTLASTHG----------DHTVKIIDCQT-GSCLKVLHG-HRRTPWVVRFHPLNPTIIAS--GSLDHEVRL  176 (730)
Q Consensus       111 t~lafSPDG~~LaSgS~----------DgtVrVWDl~t-g~~l~~l~g-H~~~V~sVafSP~dg~lLaS--gS~DgtVrL  176 (730)
                      ..+.|+++|..|+.-..          -+...||.++. +.....+.- ..++|..++|+| +++.|+.  |..+..|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            46788898887654433          12344444422 233444432 345799999999 6665543  446789999


Q ss_pred             EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-C---CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-d---d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      ||++ ++.+..+. ...++.+.|+|+|++|++++ +   +.|.+||+++.+.+.    ...| ..+..++|+|||+++++
T Consensus        88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEEE
Confidence            9996 66666665 46778999999999999987 2   349999999766533    2233 35789999999999998


Q ss_pred             EEeeCCcc
Q 004785          253 TAEVNDLD  260 (730)
Q Consensus       253 tgsvwdl~  260 (730)
                      +...+..+
T Consensus       161 a~t~~r~~  168 (194)
T PF08662_consen  161 ATTSPRLR  168 (194)
T ss_pred             EEecccee
Confidence            87765444

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=8.2e-11  Score=125.54  Aligned_cols=161  Identities=18%  Similarity=0.200  Sum_probs=132.8

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC------CeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCcE
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEV  174 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~~l~-gH~~~V~sVafSP~dg~lLaSgS~DgtV  174 (730)
                      .+.+|.+.|+++.||.++++|++|++|..+++|++..      .+++.... .|...|.+++|.- +..++++|..+++|
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence            4779999999999999999999999999999999853      35555443 3568899999998 88999999999999


Q ss_pred             EEEECCCCeEEEEecCCC---CeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          175 RLWNASTAECIGSRDFYR---PIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       175 rLWDl~tg~~i~~l~h~~---~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      .+.|+.+.+.+..+.|..   .|+.+..+|-.+.|++.++++ |.+||.+.......+.....-....+.+.|+|-...|
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999998887654   899999999989999888666 9999998876433344444456678899999998888


Q ss_pred             EEEEe------eCCccCCC
Q 004785          251 LLTAE------VNDLDSSE  263 (730)
Q Consensus       251 latgs------vwdl~s~~  263 (730)
                      +++.+      +||++...
T Consensus       210 i~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             EEeccccCCCCceeecccc
Confidence            77654      77776433

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.25  E-value=7.2e-10  Score=112.02  Aligned_cols=112  Identities=16%  Similarity=0.359  Sum_probs=91.3

Q ss_pred             CCCCeEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---CcEEEEECC
Q 004785          106 PPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNAS  180 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~  180 (730)
                      ..+.|.+++|+|+|+.|++..  .+..|.+||++ ++.+..+.  ...+..|.|+| ++++++.++.+   |.|.+||++
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence            345699999999999876653  46799999996 66666664  46788999999 89999887754   679999999


Q ss_pred             CCeEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCC
Q 004785          181 TAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMR  222 (730)
Q Consensus       181 tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-------dd~I~VWDl~t~  222 (730)
                      +.+.+....+.. +..++|+|||++|++++       |++++||++...
T Consensus       134 ~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  134 KKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             CCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            999888877665 68999999999999886       345999998643

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.24  E-value=9.1e-11  Score=129.58  Aligned_cols=172  Identities=14%  Similarity=0.218  Sum_probs=131.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC----------
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT----------  138 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~--------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t----------  138 (730)
                      ...+..+..+..-|.|++.|....+        ..-.+..|+|+.|-| +..+++.+..+|.+++||...          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            3466778888889999999876431        112346899999999 555677778899999997621          


Q ss_pred             ----Ce--------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEE
Q 004785          139 ----GS--------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAF  199 (730)
Q Consensus       139 ----g~--------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVaf  199 (730)
                          +.              ++..+.--.+.|+..+|+| |+++||+.+.||.+||+|..+.+.+.... .-+...+++|
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence                11              1122222345788899999 99999999999999999999887766544 4567899999


Q ss_pred             cCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785          200 HASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (730)
Q Consensus       200 SPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvw  257 (730)
                      ||||++|++|+.|. |.||.+..++.+.   .-.+|..+|..|+|.|    +.++.+.|
T Consensus       341 SPDGKyIvtGGEDDLVtVwSf~erRVVA---RGqGHkSWVs~VaFDp----ytt~~ee~  392 (636)
T KOG2394|consen  341 SPDGKYIVTGGEDDLVTVWSFEERRVVA---RGQGHKSWVSVVAFDP----YTTSTEEW  392 (636)
T ss_pred             cCCccEEEecCCcceEEEEEeccceEEE---eccccccceeeEeecc----cccccccc
Confidence            99999999999555 9999998887654   5678999999999998    34445555

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.24  E-value=2.4e-11  Score=128.97  Aligned_cols=154  Identities=14%  Similarity=0.208  Sum_probs=120.8

Q ss_pred             CCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-
Q 004785          106 PPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-  183 (730)
Q Consensus       106 H~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-  183 (730)
                      -...|.++.|+| .-..|++|+.|+.|.|||++++.+++.+.- +-.-+.|+|+| ....|++++.|..++.+|++.-+ 
T Consensus       186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~  263 (433)
T KOG0268|consen  186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR  263 (433)
T ss_pred             CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCc-cccceeeccccccceehhhhhhcc
Confidence            345688999999 456788888999999999999998876642 23467899999 99999999999999999998743 


Q ss_pred             EEEE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccC
Q 004785          184 CIGS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDS  261 (730)
Q Consensus       184 ~i~~-l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s  261 (730)
                      ++.. .+|...|.++.|+|.|+-+++||-| .|+||.++.+..-.  .....--..|.+|.||-|.+++++++..-+++.
T Consensus       264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl  341 (433)
T KOG0268|consen  264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL  341 (433)
T ss_pred             cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--hhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence            3333 4688999999999999999999955 59999998876422  112222457999999999998888776555554


Q ss_pred             CC
Q 004785          262 SE  263 (730)
Q Consensus       262 ~~  263 (730)
                      |+
T Consensus       342 Wk  343 (433)
T KOG0268|consen  342 WK  343 (433)
T ss_pred             ee
Confidence            43

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.22  E-value=1.3e-11  Score=141.22  Aligned_cols=180  Identities=16%  Similarity=0.248  Sum_probs=133.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ....+..|++|++|..+++|..++.    .+.||.+.|+.++.+.+..+++++|.|..|++|.+.++.++..+.+|++.|
T Consensus       198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgav  277 (1113)
T KOG0644|consen  198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAV  277 (1113)
T ss_pred             eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccce
Confidence            3457899999999999999998876    578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeE--------------EEEe--c---------------CCCCeEEEEEcC
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC--------------IGSR--D---------------FYRPIASIAFHA  201 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--------------i~~l--~---------------h~~~V~sVafSP  201 (730)
                      ++|+|+|     ..+.+.||++++||.+-...              +..+  .               ....+..++|..
T Consensus       278 taiafsP-----~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~  352 (1113)
T KOG0644|consen  278 TAIAFSP-----RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS  352 (1113)
T ss_pred             eeeccCc-----cccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc
Confidence            9999999     44889999999999871110              0000  0               001122233333


Q ss_pred             CCCEEEEEE------------CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCC
Q 004785          202 SGELLAVAS------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSE  263 (730)
Q Consensus       202 dG~~LAsgS------------dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~  263 (730)
                      .+-.+++.+            +..+.+|++-++....   .+.+|...++.+.|+|-...++-+.+      +|++..+.
T Consensus       353 ~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  353 NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             cceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence            332333332            2237888888886544   56788889999999997776665443      66666443


Q ss_pred             c
Q 004785          264 S  264 (730)
Q Consensus       264 ~  264 (730)
                      .
T Consensus       430 p  430 (1113)
T KOG0644|consen  430 P  430 (1113)
T ss_pred             c
Confidence            3

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=2.8e-11  Score=143.05  Aligned_cols=174  Identities=18%  Similarity=0.182  Sum_probs=139.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC--C----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP--L----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-  150 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~--L----~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~-  150 (730)
                      ..+..|++|.+||.|.+||+..-.  +    ......|.+++|+. ....|++++.+|.+.|||++..+.+..+..|.+ 
T Consensus       127 ~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~  206 (1049)
T KOG0307|consen  127 FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR  206 (1049)
T ss_pred             cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc
Confidence            355689999999999999987542  1    12456799999998 566889999999999999999988887776655 


Q ss_pred             -CcEEEEEccCCCCEEEEEeCCC---cEEEEECCCC-eEEEEe-cCCCCeEEEEEcCCC-CEEEEEE-CCeEEEEEcCCC
Q 004785          151 -TPWVVRFHPLNPTIIASGSLDH---EVRLWNASTA-ECIGSR-DFYRPIASIAFHASG-ELLAVAS-GHKLYIWRYNMR  222 (730)
Q Consensus       151 -~V~sVafSP~dg~lLaSgS~Dg---tVrLWDl~tg-~~i~~l-~h~~~V~sVafSPdG-~~LAsgS-dd~I~VWDl~t~  222 (730)
                       .+..++|||++...+++++.|.   .|.+||++.- ..++++ .|...|.++.|++.+ ++|++++ |++|.+|+.+++
T Consensus       207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence             4678999998888888888764   5999999853 455665 699999999999977 5666666 566999999999


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +.+.   .+.....++..+.|+|...-+++.+.
T Consensus       287 Evl~---~~p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  287 EVLG---ELPAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             eEee---ecCCCCcceeeeeecCCCcchhhhhe
Confidence            8755   45556789999999998886666554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.21  E-value=2.4e-10  Score=124.33  Aligned_cols=175  Identities=14%  Similarity=0.190  Sum_probs=132.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-EEEEecCCCCc
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVLHGHRRTP  152 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH~~~V  152 (730)
                      +...+.+.+.||+|++-|++...      +..-...+..+.|+.+...++.+.+=|...+||.+++.. ...+.-|...|
T Consensus       246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI  325 (498)
T KOG4328|consen  246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI  325 (498)
T ss_pred             ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence            44578889999999999998763      222445678899999877777887777999999988654 67778899999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCe-----EEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAE-----CIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-----~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      ..|+++|....+++|++.|++++|||++.-.     .+..+.|...|.++.|||+|-.|++.+ |+.|+|||..--....
T Consensus       326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~  405 (498)
T KOG4328|consen  326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD  405 (498)
T ss_pred             ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence            9999999889999999999999999998632     255678999999999999877677777 6679999984111111


Q ss_pred             CCeEEecCCC----C--eEEEEEccCCCeEEEEE
Q 004785          227 SPRIVLRTRR----S--LRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       227 ~~~~l~~h~~----~--V~sVaFSPdG~~Llatg  254 (730)
                      .+...+.|..    +  .....|.|+..++++..
T Consensus       406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~  439 (498)
T KOG4328|consen  406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR  439 (498)
T ss_pred             CccceeeccCcccccccchhheeCCCccEEEEec
Confidence            2333444432    2  23557999888555443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=8.1e-10  Score=117.54  Aligned_cols=169  Identities=14%  Similarity=0.215  Sum_probs=125.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC---CCC-CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC----CeE---------
Q 004785           80 ARRGLASWVEAESLHHLRPKYC---PLS-PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT----GSC---------  141 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~---~L~-gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t----g~~---------  141 (730)
                      .-..++.+..|.+|++|+..+.   .|+ .-...|+|++|-| .++-|+.|+.. -|.||....    +..         
T Consensus       109 H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~  187 (445)
T KOG2139|consen  109 HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHL  187 (445)
T ss_pred             hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccch
Confidence            3456678889999999998753   233 2356799999999 45678888775 488997632    111         


Q ss_pred             -EEEEecCCCCcEEEEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004785          142 -LKVLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIW  217 (730)
Q Consensus       142 -l~~l~gH~~~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VW  217 (730)
                       +....+| ..|++++|++ ++..+++++. |..|.|||..++..+... ...+.+.-+.|||||.+|+.++ |...++|
T Consensus       188 qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw  265 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW  265 (445)
T ss_pred             hheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence             2223456 5799999999 8888888775 678999999999887765 3456788999999999888887 6669999


Q ss_pred             EcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          218 RYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       218 Dl~-t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ... +....+   .. -....|..-+|+|+|++|+.+..
T Consensus       266 ~e~q~wt~er---w~-lgsgrvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  266 QENQSWTKER---WI-LGSGRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             hhcccceecc---ee-ccCCceeeeeecCCCCEEEEEEc
Confidence            553 333222   22 23448999999999999988765

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.20  E-value=9.1e-10  Score=124.53  Aligned_cols=171  Identities=13%  Similarity=0.141  Sum_probs=139.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~~~V~  153 (730)
                      .+.+|++.+-+|+|.-||+.+.+    +....+.|.+++.+|.+..++.|++||.++.++...++..  ..|.-.++.|.
T Consensus        79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            67899999999999999998763    4456778999999999999999999998888888877654  34455678899


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCc
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMRE  223 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---------h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~  223 (730)
                      +++|+| ++..+++|+.||.|++||+.++..+....         ...-|.++.|-.|+. |++|. .|.|.+||...++
T Consensus       159 slsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  159 SLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             EEEecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcc
Confidence            999999 88999999999999999999998776321         122467777776665 45554 5679999999998


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+   ...-|...|.+++..+++.++++++-
T Consensus       237 Liq---S~~~h~adVl~Lav~~~~d~vfsaGv  265 (691)
T KOG2048|consen  237 LIQ---SHSCHDADVLALAVADNEDRVFSAGV  265 (691)
T ss_pred             hhh---hhhhhhcceeEEEEcCCCCeEEEccC
Confidence            765   56678899999999999887777663

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.20  E-value=2.2e-10  Score=120.26  Aligned_cols=147  Identities=18%  Similarity=0.265  Sum_probs=120.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC-CCC
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA-STA  182 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl-~tg  182 (730)
                      ..+|+|.+|++|+..+|.+.+...|.||.....   +...+++.|...|+.|.|+| ..+.|++|+.|..-++|.. ..+
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence            467999999999999999999999999987654   46788999999999999999 9999999999999999999 444


Q ss_pred             eEE---EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          183 ECI---GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       183 ~~i---~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +-.   ..+.+++..++|.|+|.++.+|+|++.+ |.||-+...+.-- ...+...++..|.++.|+|++-.+++++
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            432   3356899999999999999999999776 8898887654321 1123445678899999999998555544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.20  E-value=2.3e-10  Score=120.15  Aligned_cols=178  Identities=17%  Similarity=0.241  Sum_probs=132.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCC------CCC---CeEEEEECCCCCEEEEEeCCCeEEEEEC-CCCeEEEEE-----
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLSP------PPR---STIAAAFSPDGKTLASTHGDHTVKIIDC-QTGSCLKVL-----  145 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~g------H~~---~Vt~lafSPDG~~LaSgS~DgtVrVWDl-~tg~~l~~l-----  145 (730)
                      ...+++.+.+..|++||+.+++++.      |..   .-.++.|+|||.+|+.| ....|+++|+ +.|+.-..+     
T Consensus       123 t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  123 TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc
Confidence            3455567789999999999987653      333   34699999999999866 6679999999 556432221     


Q ss_pred             --ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC
Q 004785          146 --HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS--GHKLYIWRYN  220 (730)
Q Consensus       146 --~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~  220 (730)
                        .+..+-|.+++|+|.+...++.++....+-|+.-..+.++..+ +|.+.|+.+.|+++|+.|++|.  +++|..||++
T Consensus       202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence              2346778999999988889999999999989888887777765 5999999999999999999998  6679999998


Q ss_pred             CCccccCCeEEecCCC---CeEEEEEccCCCeEEEEE-----eeCCccC
Q 004785          221 MREETSSPRIVLRTRR---SLRAVHFHPHAAPLLLTA-----EVNDLDS  261 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~---~V~sVaFSPdG~~Llatg-----svwdl~s  261 (730)
                      .....  ...+..|..   .-.-....|+|++|+++.     .+|+++.
T Consensus       282 ~~~~p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  282 YSRDP--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hccch--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            76542  223344433   223445578888665542     2676664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.19  E-value=1.2e-10  Score=130.58  Aligned_cols=176  Identities=20%  Similarity=0.283  Sum_probs=135.1

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l  188 (730)
                      .|+.++|-|||..|+.+..| .+.+||...|..+..+++|++.|++++|+. +++.++||+.|..|.+|.-+ -+-+..+
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~k-lEG~LkY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSK-LEGILKY   90 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEeccc-ccceeee
Confidence            79999999999998887554 799999999999999999999999999999 99999999999999999864 3444557


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeE
Q 004785          189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTL  268 (730)
Q Consensus       189 ~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l  268 (730)
                      .|.+.|.++.|.|-...|++++=...-+|.........     ......+.+.+|..||.+++.+-....          
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-----~kss~R~~~CsWtnDGqylalG~~nGT----------  155 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-----HKSSSRIICCSWTNDGQYLALGMFNGT----------  155 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-----hhhheeEEEeeecCCCcEEEEeccCce----------
Confidence            79999999999999999999987677889776554322     223456889999999998876542211          


Q ss_pred             eccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCC
Q 004785          269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE  316 (730)
Q Consensus       269 ~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~  316 (730)
                                   +.+.+ ..+++.....-+-+...|+|..+|+|...
T Consensus       156 -------------IsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  156 -------------ISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             -------------EEeec-CCCCcceEEeCCCCCCCCceEEEecCCCC
Confidence                         22221 22333333334444566888888888754

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=4e-09  Score=118.96  Aligned_cols=170  Identities=15%  Similarity=0.089  Sum_probs=114.8

Q ss_pred             cCCCEEEEEe---CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEECCCCeEEEEEecCC
Q 004785           79 DARRGLASWV---EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs---~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+++.|+..+   .+..|.+|++.+++   +....+.+..+.|||||+.|+.. +.++  .|++||+.+++... +..+.
T Consensus       208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~  286 (429)
T PRK03629        208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGR  286 (429)
T ss_pred             CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCC
Confidence            3445555332   23468899987762   33444556678999999988865 3344  59999999887544 44444


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004785          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR  222 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d--~I~VWDl~t~  222 (730)
                      ..+....|+| +++.|+..+. ++  .|+++|+.+++..........+....|+|||++|+..+.  +  .|++||+.++
T Consensus       287 ~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g  365 (429)
T PRK03629        287 SNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG  365 (429)
T ss_pred             CCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence            5678899999 7776666554 34  455567877765554444455667899999999888762  2  2899999877


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +...    +.. ........|+|||++++.++.
T Consensus       366 ~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        366 GVQV----LTD-TFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             CeEE----eCC-CCCCCCceECCCCCEEEEEEc
Confidence            5322    222 223456789999998888765

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=9.7e-10  Score=123.82  Aligned_cols=168  Identities=15%  Similarity=0.113  Sum_probs=113.6

Q ss_pred             cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeEE--EEECCCCeEEEEEecCC
Q 004785           79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVK--IIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~D---gsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVr--VWDl~tg~~l~~l~gH~  149 (730)
                      .+++.|+..+.+   ..|.+||+.++.   +....+....++|+|||++|+.++ .++.+.  +||+.+++ +..+..+.
T Consensus       213 PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~  291 (429)
T PRK01742        213 PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGA  291 (429)
T ss_pred             CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCC
Confidence            355566655432   369999998763   332333455789999999988875 577654  55776665 45566677


Q ss_pred             CCcEEEEEccCCCCEEE-EEeCCCcEEEEECCC-CeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC
Q 004785          150 RTPWVVRFHPLNPTIIA-SGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS  227 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLa-SgS~DgtVrLWDl~t-g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~  227 (730)
                      ..+....|+| +++.++ +...++...||++.. +.....+.+..  ....|+|||++|++.+.+.+.+||+.+++... 
T Consensus       292 ~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~-  367 (429)
T PRK01742        292 GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEV-  367 (429)
T ss_pred             CCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEE-
Confidence            7788999999 666554 555678888887643 22223334333  45789999999998887778889998876422 


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                         +... .....+.|+|||++++.++.
T Consensus       368 ---lt~~-~~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        368 ---LSST-FLDESPSISPNGIMIIYSST  391 (429)
T ss_pred             ---ecCC-CCCCCceECCCCCEEEEEEc
Confidence               2111 23356789999998887764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.18  E-value=1.7e-10  Score=119.67  Aligned_cols=147  Identities=16%  Similarity=0.264  Sum_probs=118.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-EEEE-----ecCCCCcEEEEEcc-CCCCEEEEEeCCCcEEEE
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVL-----HGHRRTPWVVRFHP-LNPTIIASGSLDHEVRLW  177 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l-----~gH~~~V~sVafSP-~dg~lLaSgS~DgtVrLW  177 (730)
                      .+-+.|.|+.|.|++..|++-. |..|.+|+++.+.. +..+     .+|+...++-+|+| .+++.+++ ..|+++..|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence            4567899999999999998875 88999999988765 3333     24667788999999 45566655 568899999


Q ss_pred             ECCCCeEEEEec--CCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          178 NASTAECIGSRD--FYRPIASIAFHASGE-LLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       178 Dl~tg~~i~~l~--h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      |+++.++...+.  |...|..+.|.|+-+ +|++++|++ |+|||.++.+.  ....+.+|.-+|++|.|+|.-..|+.+
T Consensus       199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccceEEEe
Confidence            999988777664  788999999999887 667777665 99999998775  446788899999999999987777776


Q ss_pred             Ee
Q 004785          254 AE  255 (730)
Q Consensus       254 gs  255 (730)
                      ++
T Consensus       277 ~~  278 (370)
T KOG1007|consen  277 GG  278 (370)
T ss_pred             cC
Confidence            65

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.18  E-value=2.6e-10  Score=125.83  Aligned_cols=163  Identities=15%  Similarity=0.208  Sum_probs=127.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      ....++..++||++.+.+-...   .+..|.+.|.+-.|+|||.-|+++++||.|++|. ++|....++......|+|++
T Consensus        74 ~~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR  152 (737)
T ss_pred             CcceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence            3456777889999998875433   4678999999999999999999999999999999 56765555555667899999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCC-CeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecC
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNAST-AECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRT  234 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h  234 (730)
                      |.|+..+.+++.+.  .+.|=-+.. .+.++...|.+-|.++.|++..+++++|+.| +.+|||.....    ......|
T Consensus       153 W~p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~  226 (737)
T KOG1524|consen  153 WAPNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAE  226 (737)
T ss_pred             ECCCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChh
Confidence            99955555555443  455555554 3556667799999999999999999999965 59999976553    2345668


Q ss_pred             CCCeEEEEEccCCCe
Q 004785          235 RRSLRAVHFHPHAAP  249 (730)
Q Consensus       235 ~~~V~sVaFSPdG~~  249 (730)
                      ..+|++++|.|+..+
T Consensus       227 ey~ITSva~npd~~~  241 (737)
T KOG1524|consen  227 EYAITSVAFNPEKDY  241 (737)
T ss_pred             ccceeeeeeccccce
Confidence            889999999999443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.18  E-value=4.7e-10  Score=116.42  Aligned_cols=174  Identities=16%  Similarity=0.181  Sum_probs=133.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEE-e
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVL-H  146 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----------L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l-~  146 (730)
                      ++..+++.. |..|.+|+++...          -.+|....++-+|||  ||+.+++. .|+++..||+++.++...+ .
T Consensus       134 ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  134 NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh
Confidence            556666654 8889999987542          124667789999999  88888876 5789999999998777666 5


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEEe-cCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCC
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSR-DFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMR  222 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l-~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~  222 (730)
                      .|...|..+.|+|+...+|++|+.||.|+|||.++-+ +++.+ +|...|.++.|+|.-. +|.+|+ |..|.+|....-
T Consensus       212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence            7888999999999777899999999999999998644 45554 5889999999999665 555555 445888876432


Q ss_pred             cc---------------------c-----cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EE---------------------T-----SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~---------------------~-----~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..                     .     .....+..|.+.|++++||.-..+++++-+
T Consensus       292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS  350 (370)
T KOG1007|consen  292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS  350 (370)
T ss_pred             ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence            10                     0     012245678999999999999998888765

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.18  E-value=2.8e-10  Score=118.17  Aligned_cols=170  Identities=18%  Similarity=0.212  Sum_probs=133.0

Q ss_pred             CCCeEEEEeCCC-------------CCCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe---EEEEEecCCCC
Q 004785           89 EAESLHHLRPKY-------------CPLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHRRT  151 (730)
Q Consensus        89 ~DgsIrlWd~~t-------------~~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~~~  151 (730)
                      .+..+|+|.+..             .+-..+..++++..|+. |-++|.+.|-|.+..|||++++.   ....+-.|...
T Consensus       119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE  198 (364)
T KOG0290|consen  119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE  198 (364)
T ss_pred             ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence            355688888763             13345677899999998 88899999999999999999873   35667889999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ec--C-CCCeEEEEEcCCC-CEEEEEE-C-CeEEEEEcCCCcc
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD--F-YRPIASIAFHASG-ELLAVAS-G-HKLYIWRYNMREE  224 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~--h-~~~V~sVafSPdG-~~LAsgS-d-d~I~VWDl~t~~~  224 (730)
                      |+.|+|...+-+.|++.+.||.||+||++.-+.-.. ++  . ..+...++|++.. +++|+-. + .+|.|.|++....
T Consensus       199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t  278 (364)
T KOG0290|consen  199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT  278 (364)
T ss_pred             eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc
Confidence            999999986678999999999999999997654333 22  2 4567788998744 5777765 3 3499999998764


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCcc
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~  260 (730)
                        ....+..|...|+.++|.|..+.-+++++      +||+.
T Consensus       279 --pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  279 --PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             --ceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence              34567889999999999998876666655      66665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=3.1e-09  Score=119.86  Aligned_cols=169  Identities=15%  Similarity=0.089  Sum_probs=116.6

Q ss_pred             CCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCC--eEEEEECCCCeEEEEEecCCC
Q 004785           80 ARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        80 ~g~~L~Sgs~---DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaS-gS~Dg--tVrVWDl~tg~~l~~l~gH~~  150 (730)
                      +++.|+..+.   +..|.+||+.+++   +....+...+..|+|||+.|+. .+.++  .|++||+.+++. ..+..+..
T Consensus       214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~  292 (433)
T PRK04922        214 DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFG  292 (433)
T ss_pred             CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCC
Confidence            4556665543   3469999987763   4445555668999999998764 45554  699999988874 45555666


Q ss_pred             CcEEEEEccCCCCEEEEEe-CCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCCc
Q 004785          151 TPWVVRFHPLNPTIIASGS-LDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMRE  223 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS-~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d---~I~VWDl~t~~  223 (730)
                      .....+|+| +++.++..+ .++.  |+++|+.+++.............++|+|||++|+..+. +   .|++||+.+++
T Consensus       293 ~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        293 IDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence            567899999 777666555 4444  77778877765544433444557899999999988762 2   39999997765


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..    .+. +........|+|||++++.+..
T Consensus       372 ~~----~Lt-~~~~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        372 VR----TLT-PGSLDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             eE----ECC-CCCCCCCceECCCCCEEEEEEe
Confidence            42    122 2234557799999998887765

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.17  E-value=7e-09  Score=108.20  Aligned_cols=176  Identities=27%  Similarity=0.403  Sum_probs=134.9

Q ss_pred             EEEecCCCEEEEEeC-CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEE-EEec
Q 004785           75 EAGRDARRGLASWVE-AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLK-VLHG  147 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~-DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~-~l~g  147 (730)
                      ......+..++.+.. |+.+++|+....    .+.+|...|.+++|+|++. .+++++.|+.|++||...+..+. .+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~  240 (466)
T COG2319         161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG  240 (466)
T ss_pred             EEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence            334445557777775 999999999863    4667999999999999998 55555899999999999888887 6888


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~  224 (730)
                      |...+ ...|+| ++.++++++.|+.+++||+..... ...+ .|...+.++.|+|++..+++++.+. +.+||..+...
T Consensus       241 ~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         241 HSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             CCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence            98876 448999 668888999999999999987664 4443 6788999999999988888876445 99998887765


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..... ...|...+..+.|.+++..++.+
T Consensus       319 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  346 (466)
T COG2319         319 LSSLT-LKGHEGPVSSLSFSPDGSLLVSG  346 (466)
T ss_pred             EEEee-ecccCCceEEEEECCCCCEEEEe
Confidence            43111 23666679999994332444444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.17  E-value=1.3e-09  Score=110.83  Aligned_cols=138  Identities=22%  Similarity=0.341  Sum_probs=111.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l  188 (730)
                      .|+++-..|..+-|+.++.|+.++-||+++|+..+.|+||++.|.++.--. ....+++|+.||++|+||.++++++..+
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEe
Confidence            589999999777777777999999999999999999999999999998854 5667899999999999999999998886


Q ss_pred             cCC-----------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          189 DFY-----------RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       189 ~h~-----------~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +..           ..|-++  .-+..+|++|++.++.+|.++..+...    ...-...|..+.|..|  .+++.+.
T Consensus       195 e~yk~~~~lRp~~g~wigal--a~~edWlvCGgGp~lslwhLrsse~t~----vfpipa~v~~v~F~~d--~vl~~G~  264 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGGPKLSLWHLRSSESTC----VFPIPARVHLVDFVDD--CVLIGGE  264 (325)
T ss_pred             ccccChhhcCcccCceeEEE--eccCceEEecCCCceeEEeccCCCceE----EEecccceeEeeeecc--eEEEecc
Confidence            522           234444  345679999988889999999887543    5556678888899655  3555553

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.17  E-value=4.9e-10  Score=123.69  Aligned_cols=160  Identities=16%  Similarity=0.168  Sum_probs=128.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      .+|..|.+.++||.|++|.-..-   ++.....+|.|++|.|+...++.+-. +.+.|=-+.-...+-.++.|.+-|.++
T Consensus       114 ~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~  192 (737)
T KOG1524|consen  114 PDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSL  192 (737)
T ss_pred             CCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEe
Confidence            46788999999999999996432   45667788999999998877666643 456666666666677889999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCC
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                      .|++ ..+++++|+.|-..++||.........-.|..+|++++|.|+ +.+++++-+.+++              .....
T Consensus       193 ~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~--------------~~p~~  256 (737)
T KOG1524|consen  193 SWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARF--------------SSPRV  256 (737)
T ss_pred             ecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeeeeeee--------------cCCCc
Confidence            9999 999999999999999999875555555668999999999999 7777887766662              12234


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004785          236 RSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Llatgs  255 (730)
                      +.|..++||+||..+..+++
T Consensus       257 GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  257 GSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             cceEEEEEcCCCceeecccc
Confidence            67899999999998776554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=6.7e-09  Score=117.14  Aligned_cols=170  Identities=14%  Similarity=0.152  Sum_probs=120.5

Q ss_pred             cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCC--eEEEEECCCCeEEEEEecCC
Q 004785           79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDH--TVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~---DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaS-gS~Dg--tVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+++.|+..+.   +..|.+||+.++.   +..+.+.+...+|+|||+.|+. .+.++  .|++||+.+++. ..+..+.
T Consensus       211 pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~  289 (435)
T PRK05137        211 PNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSP  289 (435)
T ss_pred             CCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCC
Confidence            34555655442   4579999998763   5567778889999999998764 45454  488889988764 4566666


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCC
Q 004785          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMR  222 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d--~I~VWDl~t~  222 (730)
                      +......|+| +++.++..+. ++  .|++||+.+++..........+....|+|||++|+..+.  +  .|.+||+..+
T Consensus       290 ~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        290 AIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             CccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence            6677899999 7776666553 33  688899887766555545566777899999999988763  2  3888897654


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .. .   .+ .....+..+.|+|||+.++.+..
T Consensus       369 ~~-~---~l-t~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        369 GE-R---IL-TSGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             ce-E---ec-cCCCCCCCCeECCCCCEEEEEEc
Confidence            32 1   12 22335678899999998887664

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.15  E-value=9.9e-10  Score=115.47  Aligned_cols=173  Identities=17%  Similarity=0.190  Sum_probs=131.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCC-CCC------C-----CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEE
Q 004785           77 GRDARRGLASWVEAESLHHLRPK-YCP------L-----SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLK  143 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~-t~~------L-----~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~  143 (730)
                      ...+|..|+.| ....|+++|.. .++      .     .+..+-|.|++|+| +.+.++.|+....+-||.-..+.++.
T Consensus       166 Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~  244 (406)
T KOG2919|consen  166 FSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ  244 (406)
T ss_pred             ecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee
Confidence            34577777765 56789999983 331      1     23467799999999 66799999999999999988899999


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeC-CCcEEEEECCCCe-EEEEec-CCC-CeEEE--EEcCCCCEEEEEE-CCeEEE
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAE-CIGSRD-FYR-PIASI--AFHASGELLAVAS-GHKLYI  216 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~-~i~~l~-h~~-~V~sV--afSPdG~~LAsgS-dd~I~V  216 (730)
                      .+-+|.+.|+.+.|++ +++.|++|.. |-.|..||++.-+ .+..+. |.+ ....|  ...|+|++|++|+ ++.|++
T Consensus       245 llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v  323 (406)
T KOG2919|consen  245 LLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV  323 (406)
T ss_pred             eecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE
Confidence            9999999999999999 8888888765 7789999998643 333332 322 22333  4568999999997 555999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ||+++...  ....+..++..|+.|+++|--. |++++
T Consensus       324 wdlk~~gn--~~sv~~~~sd~vNgvslnP~mp-ilats  358 (406)
T KOG2919|consen  324 WDLKDLGN--EVSVTGNYSDTVNGVSLNPIMP-ILATS  358 (406)
T ss_pred             EecCCCCC--cccccccccccccceecCcccc-eeeec
Confidence            99988433  2346677889999999999855 44444

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.14  E-value=6.2e-10  Score=117.76  Aligned_cols=153  Identities=17%  Similarity=0.232  Sum_probs=123.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCC-CCeEEEEECCCCCEEEEEeC----CCeEEEEECCCCe
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPP-RSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTGS  140 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~-~~Vt~lafSPDG~~LaSgS~----DgtVrVWDl~tg~  140 (730)
                      ...+...+....+.+++.||+|++||++..      ...+|+ .+..|++.+-+++.|+.|..    |-.|.+||++..+
T Consensus        75 ~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q  154 (376)
T KOG1188|consen   75 GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ  154 (376)
T ss_pred             ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence            455555568889999999999999999865      245666 46778888778888988865    6789999999876


Q ss_pred             E-EEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----EEEEecCCCCeEEEEEcCCC-CEEEEEE-CC
Q 004785          141 C-LKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----CIGSRDFYRPIASIAFHASG-ELLAVAS-GH  212 (730)
Q Consensus       141 ~-l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----~i~~l~h~~~V~sVafSPdG-~~LAsgS-dd  212 (730)
                      . +..+ ..|...|+++.|+|.+.++|+|||.||-|.|+|++...    ....+.+...|..+.|..++ +.|.+-+ ..
T Consensus       155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E  234 (376)
T KOG1188|consen  155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME  234 (376)
T ss_pred             chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC
Confidence            6 5544 67999999999999999999999999999999998643    24456788899999999888 3455555 66


Q ss_pred             eEEEEEcCCCcc
Q 004785          213 KLYIWRYNMREE  224 (730)
Q Consensus       213 ~I~VWDl~t~~~  224 (730)
                      +..+|+++.+..
T Consensus       235 tf~~~ele~~~~  246 (376)
T KOG1188|consen  235 TFAIYELEDGSE  246 (376)
T ss_pred             ceeEEEccCCCh
Confidence            799999988764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.3e-08  Score=114.81  Aligned_cols=226  Identities=13%  Similarity=0.137  Sum_probs=136.2

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCE--EEEEeC-C--CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKT--LASTHG-D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT  163 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~--LaSgS~-D--gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~  163 (730)
                      .|.+.|.+..   ++......+..-.|||||+.  ++..+. +  ..|++.++.+|+.. .+....+.....+|+| |++
T Consensus       166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSP-DG~  243 (428)
T PRK01029        166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSP-RKK  243 (428)
T ss_pred             eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECC-CCC
Confidence            4556665543   35555666788899999985  322333 3  46888899887643 3333444556789999 666


Q ss_pred             EEEEEe-CCC----cEEEEECCCC---eEEEEecCC-CCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeE
Q 004785          164 IIASGS-LDH----EVRLWNASTA---ECIGSRDFY-RPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRI  230 (730)
Q Consensus       164 lLaSgS-~Dg----tVrLWDl~tg---~~i~~l~h~-~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~~~~~~~~  230 (730)
                      .|+..+ .++    .+.+||+..+   +........ ......+|+|||+.|+..++  +.  |+++++.....  ....
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~  321 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRL  321 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEE
Confidence            555443 323    3445777653   334444332 34467899999998888773  33  55555543221  1223


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeee
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~  310 (730)
                      +..+...+....|||||++|+.+.....               .     ..+.+++..+++...+...    ......+.
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g---------------~-----~~I~v~dl~~g~~~~Lt~~----~~~~~~p~  377 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKG---------------V-----RQICVYDLATGRDYQLTTS----PENKESPS  377 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCC---------------C-----cEEEEEECCCCCeEEccCC----CCCccceE
Confidence            4444456778899999998887753211               0     1455555544443333221    11223689


Q ss_pred             EecCCCEEEEEecCCCCCcccceeecCCCcceeeec
Q 004785          311 FVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT  346 (730)
Q Consensus       311 FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~  346 (730)
                      |+|||+.|++..... ....++..++++....+|+.
T Consensus       378 wSpDG~~L~f~~~~~-g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        378 WAIDSLHLVYSAGNS-NESELYLISLITKKTRKIVI  412 (428)
T ss_pred             ECCCCCEEEEEECCC-CCceEEEEECCCCCEEEeec
Confidence            999999999865543 34578888888777766653

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.13  E-value=3.3e-10  Score=128.18  Aligned_cols=142  Identities=22%  Similarity=0.227  Sum_probs=119.3

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      +|-||...|++++.+|+|++||+++..     -.|++|+..+......+.+|.-.|+.++|+| ++++|++.+.|+++.+
T Consensus       520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEe
Confidence            466999999999999999999999773     4589999999988889999999999999999 9999999999999999


Q ss_pred             EECCCCeEE-----EEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEcc
Q 004785          177 WNASTAECI-----GSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       177 WDl~tg~~i-----~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~--~~~~~~~~l~~h~~~V~sVaFSP  245 (730)
                      |........     ....|..-|.+..|+|++.+++++|.|+ |+||.....  +.+. ......+...|+.++|.|
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~-~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS-RFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh-hhchhccCCceeeEEeec
Confidence            988643221     1234888899999999999999999555 999998777  3322 124566788999999887

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.12  E-value=2.5e-09  Score=117.55  Aligned_cols=214  Identities=14%  Similarity=0.170  Sum_probs=151.7

Q ss_pred             cceecccccccccCC--CCccceeeeccCcceeec-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCC
Q 004785           35 LRNVFGLLAQREVAP--RTKHSSKRLLGETARKCS-----GSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC---PLS  104 (730)
Q Consensus        35 ~r~If~~~~krEis~--~~~~~~k~~wd~~~~~~s-----~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~  104 (730)
                      -..||.+...|+=..  -++......|+++.....     -.++...... .++..|..|...+.|..=.++.+   ...
T Consensus       287 ~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~-e~~~di~vGTtrN~iL~Gt~~~~f~~~v~  365 (626)
T KOG2106|consen  287 DGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA-EGKGDILVGTTRNFILQGTLENGFTLTVQ  365 (626)
T ss_pred             CCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEe-cCCCcEEEeeccceEEEeeecCCceEEEE
Confidence            355565554443111  233333445765554322     1223333333 33344777777777766666654   456


Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~  184 (730)
                      +|.+....++..|+..+|++++.|+.|++|+  ..+.+.... -..++.++.|+| .+ .++.|...|...+.|..+...
T Consensus       366 gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~l  440 (626)
T KOG2106|consen  366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDL  440 (626)
T ss_pred             ecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEeccccee
Confidence            8999999999999999999999999999999  344433322 346788999999 66 999999999999999999877


Q ss_pred             EEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          185 IGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       185 i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +.....+.+++.++|+|+|.+||+|+.+ .|+||.+....... ...-.-+...|+.+.||+|++++.+.+.
T Consensus       441 v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y-~r~~k~~gs~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  441 VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKY-SRVGKCSGSPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEE-EEeeeecCceeEEeeecCCCceEEeccC
Confidence            7776668899999999999999999954 59999997655422 1122223489999999999998876554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.11  E-value=5.8e-08  Score=109.39  Aligned_cols=211  Identities=10%  Similarity=0.066  Sum_probs=136.2

Q ss_pred             CeEEEEECCCCCE-EEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC--CcEEEEECCCC
Q 004785          109 STIAAAFSPDGKT-LASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD--HEVRLWNASTA  182 (730)
Q Consensus       109 ~Vt~lafSPDG~~-LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D--gtVrLWDl~tg  182 (730)
                      .+....|||||+. ++..+.+   ..|+++|+.+++...... ..+......|+|++..++++.+.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6789999999985 6655443   579999999887554433 455566789999444455555444  56888899888


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004785          183 ECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       183 ~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwd  258 (730)
                      +......+........|+|||+.|+..++.    .|+++|+.+++...   ..... .  ....|+|||++++.+....+
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g-~--~~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHG-K--NNSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccCC-C--cCceECCCCCEEEEEEcCCC
Confidence            766555544434567899999988888853    38999998776422   11111 1  12489999999988775322


Q ss_pred             ccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCC
Q 004785          259 LDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS  338 (730)
Q Consensus       259 l~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~s  338 (730)
                      -...         .+     ...+.+.+..+++...+....     ....|.|+|||+.|++.... ...+.++..++++
T Consensus       342 ~~~~---------~~-----~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g  401 (419)
T PRK04043        342 NEFG---------KN-----TFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNY  401 (419)
T ss_pred             cccC---------CC-----CcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-CCcEEEEEEecCC
Confidence            1100         00     124555555444433322211     12259999999999997665 3334588888888


Q ss_pred             Ccceeeec
Q 004785          339 SSSVRLLT  346 (730)
Q Consensus       339 s~~~~l~~  346 (730)
                      ....+|+.
T Consensus       402 ~~~~~l~~  409 (419)
T PRK04043        402 NKSFLFPL  409 (419)
T ss_pred             CeeEEeec
Confidence            77777763

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=6.3e-09  Score=108.99  Aligned_cols=143  Identities=23%  Similarity=0.293  Sum_probs=107.5

Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC----CeEEEEEecCCCCcEEEEEc-cCCCCEEEEEeCCCcEEEEE
Q 004785          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFH-PLNPTIIASGSLDHEVRLWN  178 (730)
Q Consensus       104 ~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t----g~~l~~l~gH~~~V~sVafS-P~dg~lLaSgS~DgtVrLWD  178 (730)
                      .+|.+-|+++.|.+.|+.+|+|+.|++|+|||..+    ..+....+.|.+.|..|.|. |.=|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            46888899999999999999999999999999644    35677889999999999995 55688999999999999997


Q ss_pred             CCC------C-eE--EE-EecCCCCeEEEEEcCC--CCEEEEEE-CCeEEEEEcCCCccccCC------e----EEecCC
Q 004785          179 AST------A-EC--IG-SRDFYRPIASIAFHAS--GELLAVAS-GHKLYIWRYNMREETSSP------R----IVLRTR  235 (730)
Q Consensus       179 l~t------g-~~--i~-~l~h~~~V~sVafSPd--G~~LAsgS-dd~I~VWDl~t~~~~~~~------~----~l~~h~  235 (730)
                      -..      + +-  .. .......|+.|.|.|.  |-.||+++ |+.||||+......+...      .    ....+.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            621      1 11  11 2346789999999995  55788887 455999997654332110      0    111245


Q ss_pred             CCeEEEEEccC
Q 004785          236 RSLRAVHFHPH  246 (730)
Q Consensus       236 ~~V~sVaFSPd  246 (730)
                      ....+|.|+|.
T Consensus       170 ~~~~CvsWn~s  180 (361)
T KOG2445|consen  170 QPCFCVSWNPS  180 (361)
T ss_pred             CcceEEeeccc
Confidence            56778888864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=2.9e-09  Score=113.98  Aligned_cols=248  Identities=13%  Similarity=0.077  Sum_probs=163.7

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC---------CCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC---------PLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~---------~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (730)
                      +.+++.|++|+.|..+++|.++.-         .++  .|...|.|++|....++|++|..+++|.+.|+++.+.+.++.
T Consensus        65 S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~  144 (609)
T KOG4227|consen   65 SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN  144 (609)
T ss_pred             ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec
Confidence            346899999999999999997631         133  355789999999999999999999999999999999887774


Q ss_pred             --cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----EEEEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEE
Q 004785          147 --GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----CIGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWR  218 (730)
Q Consensus       147 --gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----~i~~l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWD  218 (730)
                        ...+.|+.+..+| ..++|++.+.++.|.+||++...    ++...........+.|+|-.. +|++.+ .+++.|||
T Consensus       145 ~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D  223 (609)
T KOG4227|consen  145 ENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFD  223 (609)
T ss_pred             ccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence              2345899999999 78999999999999999998754    333334667889999999775 556665 45599999


Q ss_pred             cCCCcccc-CCeEEecC---CCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe--ccCCcccCC-CCeEEEec
Q 004785          219 YNMREETS-SPRIVLRT---RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA--TSPGYWRYP-PPVICMAG  286 (730)
Q Consensus       219 l~t~~~~~-~~~~l~~h---~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~--t~sG~~~~p-~~~V~l~d  286 (730)
                      .+...... ......+-   ...-.++.|+|.|..+++--.     ..|+.+..+.....  ...||.+.. ....+|.+
T Consensus       224 ~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~  303 (609)
T KOG4227|consen  224 RRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID  303 (609)
T ss_pred             eccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec
Confidence            98764311 00011111   122357889999998776432     33444333322221  223554421 12233332


Q ss_pred             CCCCCCCCcccccCCCCCCce-eeeEecCCCEEEEEecCCCCCccc
Q 004785          287 AHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHDSGATR  331 (730)
Q Consensus       287 ~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~~~~~~dsgs~~  331 (730)
                           ...++++.....+-+| .|+-..-+....++|+....++..
T Consensus       304 -----D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~  344 (609)
T KOG4227|consen  304 -----DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI  344 (609)
T ss_pred             -----ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence                 2235555555555566 444433455555556555554443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.09  E-value=3.1e-09  Score=113.45  Aligned_cols=158  Identities=19%  Similarity=0.241  Sum_probs=116.9

Q ss_pred             CeEEEEeCCCCC-CC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---CCCCcEEEEEccCCCCE
Q 004785           91 ESLHHLRPKYCP-LS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG---HRRTPWVVRFHPLNPTI  164 (730)
Q Consensus        91 gsIrlWd~~t~~-L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g---H~~~V~sVafSP~dg~l  164 (730)
                      ..+++++.+... +-  --+..|.++.++  .++|+++=.+ .|+|||+++.+.+.++..   +...+.+++++. ++.+
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~y  143 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCY  143 (391)
T ss_pred             ceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CCce
Confidence            457777766432 11  134568888886  4567776555 499999999999888754   333455555555 4456


Q ss_pred             EEE-Ee-CCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEEecC--CCC
Q 004785          165 IAS-GS-LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRT--RRS  237 (730)
Q Consensus       165 LaS-gS-~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~~~~~l~~h--~~~  237 (730)
                      ++. ++ ..|.|.|||+.+-+.+..+. |++.+.+++|+++|.+||++++.+  |||+.+..++.+.   .+...  ...
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~~~  220 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYPVS  220 (391)
T ss_pred             EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCceeeE
Confidence            665 33 36889999999988887765 999999999999999999999755  9999999988654   22222  346


Q ss_pred             eEEEEEccCCCeEEEEEe
Q 004785          238 LRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       238 V~sVaFSPdG~~Llatgs  255 (730)
                      |++++|+||+.+|.++++
T Consensus       221 IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             EEEEEECCCCCeEEEecC
Confidence            899999999998888776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=1.1e-08  Score=115.41  Aligned_cols=170  Identities=21%  Similarity=0.139  Sum_probs=112.5

Q ss_pred             cCCCEEEEEeC---CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEE--ECCCCeEEEEEecCC
Q 004785           79 DARRGLASWVE---AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAS-THGDHTVKII--DCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~---DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaS-gS~DgtVrVW--Dl~tg~~l~~l~gH~  149 (730)
                      .+++.|+..+.   ...|.+||+.+++   +....+.+....|+|||+.|+. .+.++...||  |+.++. +..+..+.
T Consensus       205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~  283 (427)
T PRK02889        205 PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS  283 (427)
T ss_pred             CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC
Confidence            34555654443   2359999998763   4445566778999999998874 5667765555  555554 55566566


Q ss_pred             CCcEEEEEccCCCCEEEEEe-CCCcEEEE--ECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCCC
Q 004785          150 RTPWVVRFHPLNPTIIASGS-LDHEVRLW--NASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNMR  222 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS-~DgtVrLW--Dl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d---~I~VWDl~t~  222 (730)
                      +.+....|+| +++.++..+ .++...||  |+.+++...............|+|||++|+..+. +   .|++||+.++
T Consensus       284 ~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        284 GIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             CCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence            6667789999 777666544 45565666  4455554433333334556889999999987763 2   3999999877


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +...    +.. ........|+|||+.|+.+..
T Consensus       363 ~~~~----lt~-~~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        363 QVTA----LTD-TTRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             CeEE----ccC-CCCccCceECCCCCEEEEEEe
Confidence            5422    222 223467899999999888775

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.09  E-value=1.7e-08  Score=109.16  Aligned_cols=180  Identities=16%  Similarity=0.146  Sum_probs=116.2

Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEeCCC-CCC------CCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEE-
Q 004785           75 EAGRDARRGLASWV-EAESLHHLRPKY-CPL------SPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKV-  144 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs-~DgsIrlWd~~t-~~L------~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~-  144 (730)
                      ++...+++.|++.. .++.|.+|+.+. +.+      ..+.....+++|+|||++|++++ .++.|.+||+.+...+.. 
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            33444566666554 488999999863 211      12234567889999999886655 468999999976432211 


Q ss_pred             ----Ee-cCCCCcEEEEEccCCCCEEEEEeC-CCcEEEEECCC--Ce--EEEEec-------CCCCeEEEEEcCCCCEEE
Q 004785          145 ----LH-GHRRTPWVVRFHPLNPTIIASGSL-DHEVRLWNAST--AE--CIGSRD-------FYRPIASIAFHASGELLA  207 (730)
Q Consensus       145 ----l~-gH~~~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~t--g~--~i~~l~-------h~~~V~sVafSPdG~~LA  207 (730)
                          .. ........++|+| ++++++++.. +++|.+||+..  ++  .+..+.       .......+.|+|+|++|+
T Consensus       165 ~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly  243 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY  243 (330)
T ss_pred             CCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence                11 1123467899999 8887777665 89999999973  33  233322       112234688999999999


Q ss_pred             EEE--CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          208 VAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       208 sgS--dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ++.  ++.|.+|++...................+.+.|+|||++++++..
T Consensus       244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        244 ACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            986  345999999654321101111111235668899999999888764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.09  E-value=1.7e-09  Score=112.50  Aligned_cols=176  Identities=10%  Similarity=0.159  Sum_probs=133.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEE-ec
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVL-HG  147 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l-~g  147 (730)
                      ...+-..|.+.+-|.+-.+||++++       +|..|...|.+++|...+ +.||+.+.||.||+||++..+.-..+ ..
T Consensus       159 ne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~  238 (364)
T KOG0290|consen  159 NEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED  238 (364)
T ss_pred             ccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence            3345678889999999999999885       467999999999999855 47899999999999999886544333 22


Q ss_pred             --CCCCcEEEEEccCCCCEEEEEeCC-CcEEEEECCCC-eEEEEe-cCCCCeEEEEEcCCCC-EEEEEECCe-EEEEEcC
Q 004785          148 --HRRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTA-ECIGSR-DFYRPIASIAFHASGE-LLAVASGHK-LYIWRYN  220 (730)
Q Consensus       148 --H~~~V~sVafSP~dg~lLaSgS~D-gtVrLWDl~tg-~~i~~l-~h~~~V~sVafSPdG~-~LAsgSdd~-I~VWDl~  220 (730)
                        ...+...++|++.+.+++++-..| ..|.|.|++.. ..+..+ +|...|+.++|.|... .|.+++|+. +-|||+.
T Consensus       239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence              134677899999889999985544 56999999974 444444 5999999999999664 888888776 9999997


Q ss_pred             CCcc--ccCCeEEecCCCCeEEEEEccCC-CeEEE
Q 004785          221 MREE--TSSPRIVLRTRRSLRAVHFHPHA-APLLL  252 (730)
Q Consensus       221 t~~~--~~~~~~l~~h~~~V~sVaFSPdG-~~Lla  252 (730)
                      ..-.  ...+.........|..+.|++.. .++..
T Consensus       319 q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai  353 (364)
T KOG0290|consen  319 QMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAI  353 (364)
T ss_pred             cccccCCCCchhhhhccceeeeeeecccCCCEEEE
Confidence            6432  22233333456789999999754 44433

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.04  E-value=1.8e-08  Score=113.54  Aligned_cols=204  Identities=17%  Similarity=0.181  Sum_probs=133.3

Q ss_pred             CCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE----------
Q 004785           89 EAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV----------  154 (730)
Q Consensus        89 ~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s----------  154 (730)
                      .+..+.+||...+    +|++|++.|+|++|+.||+.+|+|+.|..|.+|+-.-.- +..+ .|++.|.|          
T Consensus        31 Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~L  108 (1081)
T KOG1538|consen   31 AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQL  108 (1081)
T ss_pred             cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHh
Confidence            3567889998876    689999999999999999999999999999999854221 1122 24444444          


Q ss_pred             -----------------------------EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCCCCeEEEEEcCC
Q 004785          155 -----------------------------VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHAS  202 (730)
Q Consensus       155 -----------------------------VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l---~h~~~V~sVafSPd  202 (730)
                                                   .+|.. |+.+++-|-.||+|.|-+-...+.+..-   +.+.+|.+++|+|.
T Consensus       109 asCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  109 ASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPS  187 (1081)
T ss_pred             hhcchhhccccChhhhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCC
Confidence                                         44544 7888999999999988865433333332   25679999999996


Q ss_pred             C-----CEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCccc
Q 004785          203 G-----ELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR  276 (730)
Q Consensus       203 G-----~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~  276 (730)
                      .     ..+++...+. +.++.+..... .   ....-.-...++.+.++|.+++.++....+.       +.+..|.  
T Consensus       188 sg~G~~di~aV~DW~qTLSFy~LsG~~I-g---k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~-------~fTR~Gv--  254 (1081)
T KOG1538|consen  188 SGEGRNDILAVADWGQTLSFYQLSGKQI-G---KDRALNFDPCCISYFTNGEYILLGGSDKQLS-------LFTRDGV--  254 (1081)
T ss_pred             CCCCccceEEEEeccceeEEEEecceee-c---ccccCCCCchhheeccCCcEEEEccCCCceE-------EEeecCe--
Confidence            4     3566666433 66666643321 1   0111123456889999999999887643322       2222222  


Q ss_pred             CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCC
Q 004785          277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHD  326 (730)
Q Consensus       277 ~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~d  326 (730)
                                       .+.+. .....-+|.+..-|++..+.++.-+.+
T Consensus       255 -----------------rLGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  255 -----------------RLGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             -----------------EEeec-cccceeEEEEEEccCCceEEEEEccCe
Confidence                             11111 112335667888999999998666554

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.3e-09  Score=118.03  Aligned_cols=145  Identities=18%  Similarity=0.222  Sum_probs=111.2

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-
Q 004785          111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-  189 (730)
Q Consensus       111 t~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-  189 (730)
                      .+++|+.||..|++++.||++|||+..+...+.....|.+.|.++.|+| +++++++-+.| ..+|||.++|..+.... 
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            6899999999999999999999999888888888889999999999999 99999999999 89999999997766644 


Q ss_pred             --CCCCeEEEEEcCCC---CEEEEEE--C-CeEEEEEcCCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 004785          190 --FYRPIASIAFHASG---ELLAVAS--G-HKLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVN  257 (730)
Q Consensus       190 --h~~~V~sVafSPdG---~~LAsgS--d-d~I~VWDl~t~~~~~--~~~~l~~h~~~V~sVaFSPdG~~Llatgsvw  257 (730)
                        .+..+..+.|+-|+   .+++.+.  . +.|+.||+.......  ...........|.+++.++||++++.++...
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence              33456778898877   3333332  2 337777765443211  1122233356899999999999887776533

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=2.8e-08  Score=106.02  Aligned_cols=149  Identities=13%  Similarity=0.186  Sum_probs=110.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CC
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TA  182 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg  182 (730)
                      +| ..|++|.|++||..|++++. |..|.|||..++..+.....-.+.+.-+.|+| ++++++.+.-|+..++|+.. +.
T Consensus       194 gh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~w  271 (445)
T KOG2139|consen  194 GH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSW  271 (445)
T ss_pred             CC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccc
Confidence            44 57999999999999999987 67899999999987765544556688999999 99999999999999999543 44


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc---------CCeE--------Eec----CCCCeEEE
Q 004785          183 ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS---------SPRI--------VLR----TRRSLRAV  241 (730)
Q Consensus       183 ~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~---------~~~~--------l~~----h~~~V~sV  241 (730)
                      ...+-.-..+.|...+|+|+|++|.....+.-++|.+.-.++..         ....        ...    ..+...++
T Consensus       272 t~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l  351 (445)
T KOG2139|consen  272 TKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL  351 (445)
T ss_pred             eecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence            44443444569999999999998888876665555543222100         0000        000    13467899


Q ss_pred             EEccCCCeEEEEEe
Q 004785          242 HFHPHAAPLLLTAE  255 (730)
Q Consensus       242 aFSPdG~~Llatgs  255 (730)
                      +|+|.|.++++.-+
T Consensus       352 awDpsGeyLav~fK  365 (445)
T KOG2139|consen  352 AWDPSGEYLAVIFK  365 (445)
T ss_pred             eECCCCCEEEEEEc
Confidence            99999999998765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=2.6e-08  Score=112.47  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=102.6

Q ss_pred             eEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEECCCC---eEEEEEecCCCCcEEEEEccC
Q 004785           92 SLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPL  160 (730)
Q Consensus        92 sIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~-----DgtVrVWDl~tg---~~l~~l~gH~~~V~sVafSP~  160 (730)
                      .|.+.++..+   ++....+.....+|||||+.|+..++     |..+.+|++.++   +......++.+.....+|+| 
T Consensus       212 ~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-  290 (428)
T PRK01029        212 KIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-  290 (428)
T ss_pred             eEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-
Confidence            4666677655   34445556678899999999887664     223445777653   33333333334456789999 


Q ss_pred             CCCEEEEE-eCCCcEEEE--ECCC--CeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEE
Q 004785          161 NPTIIASG-SLDHEVRLW--NAST--AECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       161 dg~lLaSg-S~DgtVrLW--Dl~t--g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l  231 (730)
                      +++.|+.. ..++...||  ++..  ++..........+....|+|||+.|+..+..    .|++||+.+++...    +
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----L  366 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----L  366 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----c
Confidence            77755554 456655555  5532  2233333344567789999999998877632    39999998876422    3


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ......+....|+|||+.|+.+..
T Consensus       367 t~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        367 TTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             cCCCCCccceEECCCCCEEEEEEC
Confidence            333446678999999998887654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1e-08  Score=114.78  Aligned_cols=149  Identities=20%  Similarity=0.302  Sum_probs=111.6

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                      +.+|++.|.++...|.|.+|++|++||+|+||.+.+|.+++.+.-. +.|.+|+|+|....-++.+..+..+.|-+-.-|
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G  474 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG  474 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence            6799999999999999999999999999999999999999988643 479999999943333333333333444332111


Q ss_pred             --------------------------------------eEEEEecCCCCeEEEEEcCCCCEEEEEEC----CeEEEEEcC
Q 004785          183 --------------------------------------ECIGSRDFYRPIASIAFHASGELLAVASG----HKLYIWRYN  220 (730)
Q Consensus       183 --------------------------------------~~i~~l~h~~~V~sVafSPdG~~LAsgSd----d~I~VWDl~  220 (730)
                                                            .....+.|...|..+.||..|.||++...    ..|.|.++.
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence                                                  01123457788999999999999999873    239999998


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ......   .+..-.+.|..+.|+|...+++++..
T Consensus       555 K~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq  586 (733)
T KOG0650|consen  555 KRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ  586 (733)
T ss_pred             cccccC---chhhcCCceeEEEecCCCceEEEEec
Confidence            776543   23344678999999999998877654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.99  E-value=7.3e-08  Score=107.09  Aligned_cols=170  Identities=18%  Similarity=0.136  Sum_probs=117.3

Q ss_pred             cCCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCC--CeEEEEECCCCeEEEEEecCC
Q 004785           79 DARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGD--HTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~D---gsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~D--gtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+++.|+....+   ..|.+||+.++.   +..+.+.+.+++|+|||+.|+.. +.+  ..|++||+.+++. ..+..+.
T Consensus       199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~  277 (417)
T TIGR02800       199 PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGP  277 (417)
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCC
Confidence            345555544432   479999998763   44566677889999999987654 333  4699999988764 4444555


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-CC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCC
Q 004785          150 RTPWVVRFHPLNPTIIASGSL-DH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMR  222 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~  222 (730)
                      .......|+| +++.++..+. ++  .|++||+.+++..........+..+.|+|+|++|+.++.+    .|++||+.++
T Consensus       278 ~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       278 GIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence            5556789999 7776655443 33  5888899887765555556677788999999998888743    4899998775


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...    .+.. ........|+|||++++.+..
T Consensus       357 ~~~----~l~~-~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       357 GER----VLTD-TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             CeE----EccC-CCCCCCceECCCCCEEEEEEe
Confidence            431    2222 223456689999998887765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.1e-07  Score=106.74  Aligned_cols=169  Identities=12%  Similarity=0.025  Sum_probs=112.3

Q ss_pred             CCCEEEEEeCC---CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEECCCCeEEEEEecCCC
Q 004785           80 ARRGLASWVEA---ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        80 ~g~~L~Sgs~D---gsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~~  150 (730)
                      +++.|+..+.+   ..|.+|++.++.   +....+.+....|+|||++|+.. +.++  .|++||+.+++. ..+..+..
T Consensus       209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~  287 (430)
T PRK00178        209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPA  287 (430)
T ss_pred             CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCC
Confidence            45555544322   358888988763   44444556689999999988754 4444  688999988864 44555666


Q ss_pred             CcEEEEEccCCCCEEEEEe-CCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--C--eEEEEEcCCCc
Q 004785          151 TPWVVRFHPLNPTIIASGS-LDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--H--KLYIWRYNMRE  223 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS-~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d--~I~VWDl~t~~  223 (730)
                      ......|+| +++.++..+ .++  .|+++|+.+++...............|+|||++|+..+.  +  .|++||+.+++
T Consensus       288 ~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        288 IDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             CcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            667789999 666554444 333  588889888875544332334456789999999988763  2  28899998775


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...    +.. ........|+|||+.++.+..
T Consensus       367 ~~~----lt~-~~~~~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        367 VRI----LTD-TSLDESPSVAPNGTMLIYATR  393 (430)
T ss_pred             EEE----ccC-CCCCCCceECCCCCEEEEEEe
Confidence            422    222 222335689999998888765

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.97  E-value=3.6e-09  Score=117.26  Aligned_cols=142  Identities=16%  Similarity=0.177  Sum_probs=114.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC----------CeE
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT----------GSC  141 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~t----------g~~  141 (730)
                      .+|..|++|++|..+.+||.-..+     -.+|...|.++.|-|  +.+++++|..|..|+++|+..          .+.
T Consensus        60 ~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~  139 (758)
T KOG1310|consen   60 ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEET  139 (758)
T ss_pred             CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccch
Confidence            578899999999999999976543     358999999999999  567899999999999999974          234


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE-------EEe----cCCCCeEEEEEcCCCC-EEEEE
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-------GSR----DFYRPIASIAFHASGE-LLAVA  209 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i-------~~l----~h~~~V~sVafSPdG~-~LAsg  209 (730)
                      +..+..|...|..|+..|.+.+.+.+++.||+|+-+|++.....       ..+    ..--...++..+|... +|++|
T Consensus       140 ~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVG  219 (758)
T KOG1310|consen  140 TRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVG  219 (758)
T ss_pred             hhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEec
Confidence            56678899999999999966699999999999999999873211       111    1123567899999665 88888


Q ss_pred             ECCe-EEEEEcC
Q 004785          210 SGHK-LYIWRYN  220 (730)
Q Consensus       210 Sdd~-I~VWDl~  220 (730)
                      +.+- .++||.+
T Consensus       220 gsdpfarLYD~R  231 (758)
T KOG1310|consen  220 GSDPFARLYDRR  231 (758)
T ss_pred             CCCchhhhhhhh
Confidence            8666 9999953

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.96  E-value=3.8e-10  Score=129.51  Aligned_cols=115  Identities=23%  Similarity=0.347  Sum_probs=105.6

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t  181 (730)
                      +|.+|...|+|+.|...|.++++|++|..|+||..+++.++....||.+.|+.++.+. +..++++++.|..|++|-+.+
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence            4779999999999999999999999999999999999999999999999999999998 888999999999999999999


Q ss_pred             CeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785          182 AECIGSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (730)
Q Consensus       182 g~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~  220 (730)
                      +.++..+ +|.+.|++++|+|--   .++.++.+++||.+
T Consensus       264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR  300 (1113)
T ss_pred             CchHHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence            9998874 699999999999965   33336669999998

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.91  E-value=3e-09  Score=117.82  Aligned_cols=94  Identities=27%  Similarity=0.373  Sum_probs=86.6

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~  186 (730)
                      .+.|+..+|+|||++||+.+.||.+||+|+.+.+.+..++..-+...|++|+| |+++|++|+.|.-|.||.+..++.+.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA  368 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence            45788999999999999999999999999999888877777778899999999 99999999999999999999988887


Q ss_pred             E-ecCCCCeEEEEEcC
Q 004785          187 S-RDFYRPIASIAFHA  201 (730)
Q Consensus       187 ~-l~h~~~V~sVafSP  201 (730)
                      . .+|+.+|..|+|+|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            7 56999999999997

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=1.8e-07  Score=106.30  Aligned_cols=169  Identities=16%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             CCCEEEEEe-CCC--eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCC--eEEEEECCCCeEEEEEecCCC
Q 004785           80 ARRGLASWV-EAE--SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDH--TVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        80 ~g~~L~Sgs-~Dg--sIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~Dg--tVrVWDl~tg~~l~~l~gH~~  150 (730)
                      +++.|+..+ .++  .|.+||+.+++   +....+......|+|||+.|+.. +.++  .|++||+.+++. ..+..+..
T Consensus       228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~  306 (448)
T PRK04792        228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRA  306 (448)
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCC
Confidence            444454333 232  58888887663   33333445678999999988754 4555  488889988764 44555656


Q ss_pred             CcEEEEEccCCCCEEEE-EeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCc
Q 004785          151 TPWVVRFHPLNPTIIAS-GSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HK--LYIWRYNMRE  223 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaS-gS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~  223 (730)
                      .....+|+| +++.++. ...++  .|+++|+.+++..............+|+|||++|+..+.  +.  |.++|+.+++
T Consensus       307 ~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~  385 (448)
T PRK04792        307 IDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA  385 (448)
T ss_pred             CccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence            677899999 6665554 43343  477778888776554333333456799999999888763  22  6777877765


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...    +... .......|+|||+.++.+..
T Consensus       386 ~~~----lt~~-~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        386 MQV----LTST-RLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             eEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence            321    2222 12234589999998887664

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.85  E-value=1.8e-07  Score=107.96  Aligned_cols=216  Identities=10%  Similarity=0.062  Sum_probs=147.5

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC----------CCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCCeE-E--
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCP----------LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTGSC-L--  142 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~----------L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg~~-l--  142 (730)
                      ......++.|..+|.|.+||.....          ...|..+++.+.|-.+-.  -|++++.||.|..|+++.-.. .  
T Consensus       252 p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~  331 (555)
T KOG1587|consen  252 PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG  331 (555)
T ss_pred             cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence            3467889999999999999987542          347999999999987544  499999999999998865322 1  


Q ss_pred             ---EEEe------cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC---CCe-----EE-EEecCCCCeEEEEEcCCCC
Q 004785          143 ---KVLH------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS---TAE-----CI-GSRDFYRPIASIAFHASGE  204 (730)
Q Consensus       143 ---~~l~------gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~---tg~-----~i-~~l~h~~~V~sVafSPdG~  204 (730)
                         ....      .-...+++++|.+.+.+.|+.|+.+|.|.--+-.   ...     .. ....|.+.|+++.++|=+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~  411 (555)
T KOG1587|consen  332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP  411 (555)
T ss_pred             cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence               1111      1123578999999889999999999998874333   222     01 1124788999999999776


Q ss_pred             -EEEEEECCeEEEEEcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeE
Q 004785          205 -LLAVASGHKLYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVI  282 (730)
Q Consensus       205 -~LAsgSdd~I~VWDl~-t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V  282 (730)
                       .+.+++|.+|+||... ....   ...+..+...|++++|||....+++++...                      ..+
T Consensus       412 k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaWSptrpavF~~~d~~----------------------G~l  466 (555)
T KOG1587|consen  412 KNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAWSPTRPAVFATVDGD----------------------GNL  466 (555)
T ss_pred             ceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEEcCcCceEEEEEcCC----------------------Cce
Confidence             4555557789999876 3332   334555667799999999988777776411                      133


Q ss_pred             EEecCCCCCCCCcccccCCCCCCce-eeeEecCCCEEEE
Q 004785          283 CMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISL  320 (730)
Q Consensus       283 ~l~d~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~  320 (730)
                      .+||+...+.....+....  .+.+ ...++++|+.|++
T Consensus       467 ~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lav  503 (555)
T KOG1587|consen  467 DIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAV  503 (555)
T ss_pred             ehhhhhccccCCccccccc--ccccceeecCCCCcEEEE
Confidence            4444443333333333222  2334 5677778888887

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=9.5e-08  Score=97.60  Aligned_cols=180  Identities=13%  Similarity=0.014  Sum_probs=122.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC---------C-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---
Q 004785           79 DARRGLASWVEAESLHHLRPKY---------C-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---  141 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t---------~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~---  141 (730)
                      ..++.++.+..+|.|-+..++.         +     ...+|.++|+.++|.  ..+|++|++ |.|+=|.-+....   
T Consensus        20 p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~   96 (325)
T KOG0649|consen   20 PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLA   96 (325)
T ss_pred             CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhcc
Confidence            3566788888888888887653         1     246899999999998  457777754 9999987643211   


Q ss_pred             ---EEEE--ecCC-----CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE
Q 004785          142 ---LKVL--HGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       142 ---l~~l--~gH~-----~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS  210 (730)
                         +...  .-|.     ..|+++-..| ..+-++.++.|+.++-||+.+|+....+ +|.+.|.++.--.....+.+|+
T Consensus        97 ~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~  175 (325)
T KOG0649|consen   97 TKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGA  175 (325)
T ss_pred             chhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecC
Confidence               1111  1122     3588999999 6666666679999999999999998886 5999999999844444455666


Q ss_pred             -CCeEEEEEcCCCccccCCeE------EecC-CCCeEEEEEccCCCeEEEEEe----eCCccCCCc
Q 004785          211 -GHKLYIWRYNMREETSSPRI------VLRT-RRSLRAVHFHPHAAPLLLTAE----VNDLDSSES  264 (730)
Q Consensus       211 -dd~I~VWDl~t~~~~~~~~~------l~~h-~~~V~sVaFSPdG~~Llatgs----vwdl~s~~~  264 (730)
                       |+.++|||.++.+.+.....      +..| ..+|-+++-  +..+++++++    +|.+++.++
T Consensus       176 EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrsse~  239 (325)
T KOG0649|consen  176 EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSES  239 (325)
T ss_pred             CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCCCc
Confidence             66699999999986541111      1111 234455544  4556666554    777765554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.85  E-value=1.3e-08  Score=104.85  Aligned_cols=138  Identities=17%  Similarity=0.223  Sum_probs=112.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEE--
Q 004785           81 RRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCL--  142 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~--------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l--  142 (730)
                      .-.++.|-++|.+.+||+.++              ....|...|.++.|.+.-..=++|+.+..+..|+++..  .+.  
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence            345668889999999999875              24579999999999986555677888888989987543  221  


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEc
Q 004785          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRY  219 (730)
Q Consensus       143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl  219 (730)
                      ..++-..-.|..+.+-| |+++++|++.|+.||+|..++..++..+. |...|++++|+|+..++|.++.| +|.+|++
T Consensus       245 ~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            12222234588899999 99999999999999999999999998876 88999999999999999999954 5999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.84  E-value=1.6e-07  Score=99.05  Aligned_cols=166  Identities=17%  Similarity=0.196  Sum_probs=118.7

Q ss_pred             eeccCcceee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeC
Q 004785           57 RLLGETARKC--SGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHG  127 (730)
Q Consensus        57 ~~wd~~~~~~--s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPDG~~LaSgS~  127 (730)
                      ..||+....+  ...|..-+-+..-.+.+|+.. .+++|.+|......       ....+..+.+++-..+..+||.-+.
T Consensus        78 iIWDD~k~~~i~el~f~~~I~~V~l~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~  156 (346)
T KOG2111|consen   78 IIWDDLKERCIIELSFNSEIKAVKLRRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF  156 (346)
T ss_pred             EEEecccCcEEEEEEeccceeeEEEcCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence            3466433322  223333333444455555544 46788999876431       1122334555554445555655443


Q ss_pred             -CCeEEEEECCCCeE--EEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-EEEEECCCCeEEEEec---CCCCeEEEEEc
Q 004785          128 -DHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGSRD---FYRPIASIAFH  200 (730)
Q Consensus       128 -DgtVrVWDl~tg~~--l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~i~~l~---h~~~V~sVafS  200 (730)
                       -|.|+|-|+...+.  ...+..|...|.|++.+- +|.++||+|..|| |||||..+|+.+..+.   ....|++++||
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS  235 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS  235 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence             68999999977665  477899999999999998 9999999999998 7999999999998875   45689999999


Q ss_pred             CCCCEEEEEECCe-EEEEEcCCCcc
Q 004785          201 ASGELLAVASGHK-LYIWRYNMREE  224 (730)
Q Consensus       201 PdG~~LAsgSdd~-I~VWDl~t~~~  224 (730)
                      ||+.+||++||.+ |+||.++....
T Consensus       236 p~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  236 PNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             CCccEEEEEcCCCeEEEEEeecCCC
Confidence            9999999999865 99999977543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1e-07  Score=107.02  Aligned_cols=178  Identities=17%  Similarity=0.167  Sum_probs=133.3

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEECCCC--------
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGK--TLASTHGDHTVKIIDCQTG--------  139 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~--~LaSgS~DgtVrVWDl~tg--------  139 (730)
                      ..+.....|..|++|++||+|++|.+.+++   ...-.+.|.|++|+|.+.  .||++-.+. +.|.+..-|        
T Consensus       404 r~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t  482 (733)
T KOG0650|consen  404 RSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPT  482 (733)
T ss_pred             EEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcch
Confidence            334455588999999999999999999873   223355799999999665  455543332 444443111        


Q ss_pred             -----------------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---CcEEEEECCCCeEEEE
Q 004785          140 -----------------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAECIGS  187 (730)
Q Consensus       140 -----------------------------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~tg~~i~~  187 (730)
                                                   .-+...-.|...|..|.||. .|++|++...|   ..|.|.++.......-
T Consensus       483 ~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~P  561 (733)
T KOG0650|consen  483 KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSP  561 (733)
T ss_pred             hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcceEEEEecccccccCc
Confidence                                         00122234788899999999 99999987654   5699999987766554


Q ss_pred             e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          188 R-DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       188 l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      | ...+.|..+.|+|...+|++++...|+|||+.....+.   .+.....+|..++.+|.|..|++++.
T Consensus       562 F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvK---kL~tg~kwiS~msihp~GDnli~gs~  627 (733)
T KOG0650|consen  562 FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVK---KLLTGSKWISSMSIHPNGDNLILGSY  627 (733)
T ss_pred             hhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHH---HHhcCCeeeeeeeecCCCCeEEEecC
Confidence            5 35678999999999999999999999999998876544   45566778999999999998888775

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=5.1e-08  Score=108.82  Aligned_cols=156  Identities=16%  Similarity=0.146  Sum_probs=125.1

Q ss_pred             CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC--------------CCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q 004785           68 GSFSQIFEAGRDARRGLASWVEAESLHHLRPK--------------YCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKI  133 (730)
Q Consensus        68 ~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~--------------t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrV  133 (730)
                      +....+.+.....+..+++|+-|++|+.|++.              .+.+.||.+.|+.+++|.....|++++.||+|++
T Consensus       343 H~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~  422 (577)
T KOG0642|consen  343 HEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL  422 (577)
T ss_pred             ccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEe
Confidence            33445666777899999999999999999542              1358899999999999999899999999999999


Q ss_pred             EECCCCeE--------------------------------------------EEEEe-------cCCCCcEEEEEccCCC
Q 004785          134 IDCQTGSC--------------------------------------------LKVLH-------GHRRTPWVVRFHPLNP  162 (730)
Q Consensus       134 WDl~tg~~--------------------------------------------l~~l~-------gH~~~V~sVafSP~dg  162 (730)
                      |+......                                            +..+.       .-...+.-+.++| +.
T Consensus       423 w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~  501 (577)
T KOG0642|consen  423 WEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TA  501 (577)
T ss_pred             eccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CC
Confidence            98744322                                            00000       0013356688889 88


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004785          163 TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE  224 (730)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~  224 (730)
                      .+.+++..|+.|+++|..+++.+.. ..|...+.++++.|+|-+|.+++ ++.+++|.+.....
T Consensus       502 ~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  502 DITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             CeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence            9999999999999999999998876 45889999999999999999999 55599998866554

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.81  E-value=3.1e-08  Score=116.87  Aligned_cols=141  Identities=21%  Similarity=0.244  Sum_probs=118.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCcE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPW  153 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~~~V~  153 (730)
                      ...-.+++++--+.|.+|+....    .+.+|.+.|..+.|+-||+++++.|+|+++++|++++.+... ..-+|...|+
T Consensus       143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw  222 (967)
T KOG0974|consen  143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW  222 (967)
T ss_pred             CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeE
Confidence            35567888888999999997632    488999999999999999999999999999999999988775 6678999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-CCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMR  222 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~  222 (730)
                      .+.|+| +  .+++++.|.+.++|+....+.....+| .+.|..++.+++...++++++++ +++||+...
T Consensus       223 ~~~~~~-n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  223 ACCFLP-N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEecc-c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            999999 4  999999999999997764444333344 45799999999888888888555 999998654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=98.77  E-value=3.2e-08  Score=101.98  Aligned_cols=147  Identities=14%  Similarity=0.205  Sum_probs=110.5

Q ss_pred             CCCCCeEEEEECC-CCC--EEEEEeCCCeEEEEECCCCeEE----------EEEecCCCCcEEEEEccCCCCEEEEEeCC
Q 004785          105 PPPRSTIAAAFSP-DGK--TLASTHGDHTVKIIDCQTGSCL----------KVLHGHRRTPWVVRFHPLNPTIIASGSLD  171 (730)
Q Consensus       105 gH~~~Vt~lafSP-DG~--~LaSgS~DgtVrVWDl~tg~~l----------~~l~gH~~~V~sVafSP~dg~lLaSgS~D  171 (730)
                      +..+.+.|..+.. +++  +|+.|-++|.|.+||+.++..+          ..+..|..+|.++.+.+ .-+.=++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcc
Confidence            3456677777655 343  4566777999999999998433          34457999999999987 55555677888


Q ss_pred             CcEEEEECCCC--eEEEE--ec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785          172 HEVRLWNASTA--ECIGS--RD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       172 gtVrLWDl~tg--~~i~~--l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP  245 (730)
                      ..+..|++...  .+...  +. .+-.|..+..-||+++||+++ |++||||..++...+.   .+.-|+..|++++|+|
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfsp  303 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSP  303 (323)
T ss_pred             ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCC
Confidence            88888988643  32211  11 234688899999999999999 6679999999988654   7888999999999999


Q ss_pred             CCCeEEEEEe
Q 004785          246 HAAPLLLTAE  255 (730)
Q Consensus       246 dG~~Llatgs  255 (730)
                      |...+++++.
T Consensus       304 d~~lmAaask  313 (323)
T KOG0322|consen  304 DCELMAAASK  313 (323)
T ss_pred             CCchhhhccC
Confidence            9886666654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.77  E-value=3.8e-07  Score=102.58  Aligned_cols=171  Identities=15%  Similarity=0.061  Sum_probs=139.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEEC--------------------CCCCEEEEEeCCCeEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFS--------------------PDGKTLASTHGDHTVK  132 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~-------gH~~~Vt~lafS--------------------PDG~~LaSgS~DgtVr  132 (730)
                      ....++....||.+++|+....++.       .-.+.-++..|.                    -|-..|+-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            3456777788999999998766322       223344455552                    2333678888899999


Q ss_pred             EEECCCCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 004785          133 IIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVA  209 (730)
Q Consensus       133 VWDl~tg~~l~~l~--gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsg  209 (730)
                      +|++..|+....+.  +|.+.|.++.|+. +-..|.|++.|+.+..|+....+.+.... .+..+.+++.+|||+.|+++
T Consensus        84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   84 LYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            99999999887775  6999999999998 88999999999999999999998888765 56678999999999999988


Q ss_pred             ECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccC-----CCeEEEEEe
Q 004785          210 SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH-----AAPLLLTAE  255 (730)
Q Consensus       210 Sdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPd-----G~~Llatgs  255 (730)
                      + +.|++||+++.+.+.   .+.+|.+.|+.+.|.-+     |.+++++..
T Consensus       163 s-~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~  209 (541)
T KOG4547|consen  163 S-RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA  209 (541)
T ss_pred             c-ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccc
Confidence            5 469999999998765   88999999999999887     888887654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.77  E-value=2.3e-07  Score=110.98  Aligned_cols=194  Identities=12%  Similarity=0.147  Sum_probs=138.1

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--e----
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--S----  140 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~----  140 (730)
                      ++.+..+++|+.||+|++|+...-           ++..-...+.++.+.+.+..+|.++.||.|++.++...  +    
T Consensus      1058 ~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1058 SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence            345589999999999999997531           12224567889999999999999999999999998762  1    


Q ss_pred             -EEEEE--ecCCCCcEEEEEccCCCC-EEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEECCe
Q 004785          141 -CLKVL--HGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHK  213 (730)
Q Consensus       141 -~l~~l--~gH~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSdd~  213 (730)
                       ..+..  +....-|..-+|...... .++.+..-+.|..||+++......++   ..+.|++++.+|.+.+++.|+..+
T Consensus      1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred             eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence             11111  222222333444443444 77788888999999999877666554   357899999999999999999655


Q ss_pred             -EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC---eEEEEEe-------eCCccCCCcceeEeccCC
Q 004785          214 -LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA---PLLLTAE-------VNDLDSSESSLTLATSPG  273 (730)
Q Consensus       214 -I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~---~Llatgs-------vwdl~s~~~~~~l~t~sG  273 (730)
                       +-+||++-+..+.  ....++..+++.+..+|-.+   ..++++.       .|++..+.+...+...++
T Consensus      1218 ~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~ 1286 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPIL--SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDG 1286 (1431)
T ss_pred             eEEEEEeecCceee--cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCC
Confidence             9999999887644  23445567888887777443   4444443       788887777777766533

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=9.9e-08  Score=112.46  Aligned_cols=173  Identities=16%  Similarity=0.162  Sum_probs=126.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC---eEEEEEecCCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRT  151 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~~~  151 (730)
                      .+.|.+.++-..|++||+...+     -.+-...|+++.-+- .|+.|+.|-.||.|++||.+..   ..+..++.|...
T Consensus      1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred             CCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence            3445555557889999998653     223455577776655 5799999999999999998764   356778889887


Q ss_pred             --cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785          152 --PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DF---YRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (730)
Q Consensus       152 --V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l---~h---~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~  223 (730)
                        |..+.+.+.+-..+++|+.||.|++||++.......+   .|   .+..+++..|++...+|+|+...|+||++....
T Consensus      1257 ~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1257 EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred             ccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence              9999999855557999999999999999985322221   12   335899999999999999999779999986554


Q ss_pred             ccc---CCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          224 ETS---SPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       224 ~~~---~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ...   ...........+.+++|+|..-.++++
T Consensus      1337 l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred             hcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence            311   011222234578999999987755544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=1.6e-06  Score=101.28  Aligned_cols=213  Identities=13%  Similarity=0.136  Sum_probs=140.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC---CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      +.+.++ +..+..|++|...++    .+.+|...++.+.+.|..   .++++++.||+|++||...+..++.+..+.. +
T Consensus        27 D~k~l~-~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~-v  104 (792)
T KOG1963|consen   27 DAKFLF-LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP-V  104 (792)
T ss_pred             CCcEEE-EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc-e
Confidence            334443 456788999999887    488999999999999843   4677999999999999998887777653321 1


Q ss_pred             EEE-----------------------------------------------------------EEccCCCCEEEEEeCCCc
Q 004785          153 WVV-----------------------------------------------------------RFHPLNPTIIASGSLDHE  173 (730)
Q Consensus       153 ~sV-----------------------------------------------------------afSP~dg~lLaSgS~Dgt  173 (730)
                      ..+                                                           .+++ .+.+ ...-.+..
T Consensus       105 ~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ge~-~~i~~~~~  182 (792)
T KOG1963|consen  105 HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-SGEF-KGIVHMCK  182 (792)
T ss_pred             eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-CceE-EEEEEeee
Confidence            111                                                           1111 1111 11223344


Q ss_pred             EEEEECCCCeEEEE-----ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC-CccccCCeEEecCCCCeEEEEEccC
Q 004785          174 VRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM-REETSSPRIVLRTRRSLRAVHFHPH  246 (730)
Q Consensus       174 VrLWDl~tg~~i~~-----l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t-~~~~~~~~~l~~h~~~V~sVaFSPd  246 (730)
                      +.+|+..++.....     ..|.-.+++.++||+++++|++. +|+|.+|.--. .........+.-|...|.++.|++|
T Consensus       183 ~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~  262 (792)
T KOG1963|consen  183 IHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD  262 (792)
T ss_pred             EEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence            66777766441111     23555689999999999999998 56699996543 2222345678889999999999999


Q ss_pred             CCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEec
Q 004785          247 AAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       247 G~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                      |.+|+++|..                       .++.+|...++....|+.    ...+++...+|||+....+...
T Consensus       263 G~~LlSGG~E-----------------------~VLv~Wq~~T~~kqfLPR----Lgs~I~~i~vS~ds~~~sl~~~  312 (792)
T KOG1963|consen  263 GAYLLSGGRE-----------------------GVLVLWQLETGKKQFLPR----LGSPILHIVVSPDSDLYSLVLE  312 (792)
T ss_pred             CceEeecccc-----------------------eEEEEEeecCCCcccccc----cCCeeEEEEEcCCCCeEEEEec
Confidence            9999887742                       134444444444333222    3446667777788777666443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.74  E-value=2.7e-08  Score=108.88  Aligned_cols=167  Identities=18%  Similarity=0.237  Sum_probs=133.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      -.-.|+++++.|-++.-|+.++++    ..-.+.+..+.-+|-...+-+|...|+|.+|.-...+++..+..|.++|.+|
T Consensus       220 yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si  299 (545)
T KOG1272|consen  220 YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI  299 (545)
T ss_pred             hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence            345677888889999999998854    3457788999999988899999999999999999999998999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-c-cccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-E-ETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~-~-~~~~~~~l~~  233 (730)
                      ++.+ ++++++|.+.|..|+|||+++-..+.++........++||..| +||.+-++.|.||.-... . ....+.....
T Consensus       300 Av~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~  377 (545)
T KOG1272|consen  300 AVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHR  377 (545)
T ss_pred             EECC-CCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhc
Confidence            9999 9999999999999999999988776666556677888888655 566666777999953222 1 1111222223


Q ss_pred             CCCCeEEEEEccCCC
Q 004785          234 TRRSLRAVHFHPHAA  248 (730)
Q Consensus       234 h~~~V~sVaFSPdG~  248 (730)
                      ....|..+.|.|-..
T Consensus       378 ~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  378 CGGPVEDLRFCPYED  392 (545)
T ss_pred             cCcccccceeccHHH
Confidence            356899999999776

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.74  E-value=4e-07  Score=107.53  Aligned_cols=182  Identities=14%  Similarity=0.158  Sum_probs=126.6

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC----------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD  135 (730)
                      .+.....++...+.+++.||.|++|+-...                .+.+-.+.=.-++|.....+|+++++-..|+|||
T Consensus      1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred             eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence            344444566778889999999999984311                1122222224567877666677777788999999


Q ss_pred             CCCCeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE---EEE-ecCCCC--eEEEEEcCCCC-EEE
Q 004785          136 CQTGSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS-RDFYRP--IASIAFHASGE-LLA  207 (730)
Q Consensus       136 l~tg~~l~~l~-gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~-l~h~~~--V~sVafSPdG~-~LA  207 (730)
                      +....++..+. +-...|+++.-+-..+++++.|..||.|++||.+....   +.. ..|...  |..+.+.+.|- .|+
T Consensus      1194 a~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1194 AHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred             cccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCccee
Confidence            98887776663 34445777776655789999999999999999987543   222 346655  99999999776 488


Q ss_pred             EEE-CCeEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCCeEEEEE
Q 004785          208 VAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       208 sgS-dd~I~VWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPdG~~Llatg  254 (730)
                      +|+ +|.|++||++...... ......|.   +.++++..+++...+++++
T Consensus      1274 Sgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred             eeccCCeEEEEecccCcccc-cceeeeccccCccceeeeeccCCCeeeecC
Confidence            888 5569999999853322 22333332   2589999999998555444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.73  E-value=2e-08  Score=109.79  Aligned_cols=195  Identities=15%  Similarity=0.103  Sum_probs=161.0

Q ss_pred             CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785           69 SFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (730)
Q Consensus        69 s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~g---H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (730)
                      .|+...+.-..+|..+..++..|-|-.+|-.+..|..   -...|.++.|-.+.++||++ ....++||| ..|..+..+
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHCl  206 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCL  206 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeeh
Confidence            4566666677889999999999999999988775542   24568999999998899887 456899999 678889999


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~  223 (730)
                      +.|.. |..+.|-| ..-+|++++..|.++.-|+.+|+.+..+. ..+.+..++-.|-+-.+-+|.. +.|.+|.....+
T Consensus       207 k~~~~-v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  207 KRHIR-VARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             hhcCc-hhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            87754 89999999 88899999999999999999999988875 4567788888898888888874 559999988877


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEec
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t  270 (730)
                      .+.   .+..|.+.|.+|++.++|+|+++++-     +||++....+.++.+
T Consensus       285 PLv---KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  285 PLV---KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             hHH---HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            544   67889999999999999999999875     898887666555554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=7.6e-06  Score=88.00  Aligned_cols=165  Identities=13%  Similarity=0.188  Sum_probs=119.1

Q ss_pred             CCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCC--CeEE--EEEecCCCCcEEE
Q 004785           90 AESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQT--GSCL--KVLHGHRRTPWVV  155 (730)
Q Consensus        90 DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~t--g~~l--~~l~gH~~~V~sV  155 (730)
                      ++-|..|++.+.       ++..+.+..+-|+|+|++++|+++-.   ++.|-.|.++.  |+..  ........+...+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            566888887743       35578889999999999999999865   46676666654  5532  2222233344789


Q ss_pred             EEccCCCCEEEEEeC-CCcEEEEECCC-CeE---EEEecCCCC----------eEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004785          156 RFHPLNPTIIASGSL-DHEVRLWNAST-AEC---IGSRDFYRP----------IASIAFHASGELLAVAS--GHKLYIWR  218 (730)
Q Consensus       156 afSP~dg~lLaSgS~-DgtVrLWDl~t-g~~---i~~l~h~~~----------V~sVafSPdG~~LAsgS--dd~I~VWD  218 (730)
                      ++++ ++++++++.. -+.|.++-+++ |..   +....|.+.          +....|.|++++|++..  .|+|.+|+
T Consensus        95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~  173 (346)
T COG2706          95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD  173 (346)
T ss_pred             EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence            9999 8888888775 57899999876 433   333445544          88999999999999987  57799999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +..+................+.|.|+|++++..+..+
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEec
Confidence            9976543322223355667899999999998777665

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.71  E-value=2.4e-07  Score=98.05  Aligned_cols=138  Identities=17%  Similarity=0.266  Sum_probs=104.6

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-C
Q 004785          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F  190 (730)
Q Consensus       112 ~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h  190 (730)
                      -+.|||+|+++|+++.- .+.|-|.++-+..+.|.. -+.|..+.|..+.-.++.....|+.|.+|++...+-...++ .
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            47899999999999766 777778877665544433 35577899998444455557789999999999888776665 5


Q ss_pred             CCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          191 YRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       191 ~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...+.+++|||||+.|...+  +-+|.||.+.+.+...    +......+..++|+|||++.+....
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence            67899999999998776666  4559999998876522    3333556789999999998776654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.68  E-value=1.9e-06  Score=95.69  Aligned_cols=167  Identities=17%  Similarity=0.195  Sum_probs=114.2

Q ss_pred             EEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC
Q 004785           85 ASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (730)
Q Consensus        85 ~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~  160 (730)
                      ++-..++.|.+.|..+.+    +......-..+.|+|||+++++++.|+.|.++|+.+++.+..++... ....+++++ 
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~-   87 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSP-   87 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE---
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcC-
Confidence            455567888888887763    22222223457899999999999999999999999999999997554 467899999 


Q ss_pred             CCCEEEEE-eCCCcEEEEECCCCeEEEEecC--------CCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCe
Q 004785          161 NPTIIASG-SLDHEVRLWNASTAECIGSRDF--------YRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR  229 (730)
Q Consensus       161 dg~lLaSg-S~DgtVrLWDl~tg~~i~~l~h--------~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~  229 (730)
                      ++++++++ ..++++.++|.++.+.++.+..        ...+.++..+|....+++.-.  +.|.+.|+...+...  .
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~  165 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--V  165 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--E
T ss_pred             CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--e
Confidence            77777665 4689999999999998887642        346788888998886665553  448888887764322  2


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .............|+|++++++++..
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred             eeecccccccccccCcccceeeeccc
Confidence            34445667889999999999887643

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=3.4e-07  Score=102.53  Aligned_cols=168  Identities=14%  Similarity=0.168  Sum_probs=131.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe------cCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH------GHRR  150 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~------gH~~  150 (730)
                      .-.|..++....|..++++.+.    +....+.++++..++-..+|++|+.||.|-.||.++...+..+.      .|.+
T Consensus       145 scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg  224 (703)
T KOG2321|consen  145 SCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPG  224 (703)
T ss_pred             CccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcc
Confidence            3456667777778888888774    44566889999999988999999999999999998876655553      2333


Q ss_pred             -----CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC--CCeEEEEEcCC--CCEEEEEECCeEEEEEcCC
Q 004785          151 -----TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--RPIASIAFHAS--GELLAVASGHKLYIWRYNM  221 (730)
Q Consensus       151 -----~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~--~~V~sVafSPd--G~~LAsgSdd~I~VWDl~t  221 (730)
                           .|+++.|+. ++-.++.|..+|.|.|||+++.+++....|.  -+|..+.|.+.  ++.|++.....++|||-.+
T Consensus       225 ~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~  303 (703)
T KOG2321|consen  225 GDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT  303 (703)
T ss_pred             ccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhccccc
Confidence                 499999997 7889999999999999999999998887665  47889999775  3456555444599999998


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ++...    .......+..+++-|++-.++++
T Consensus       304 Gk~~a----siEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  304 GKPMA----SIEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             CCcee----eccccCCcCceeeecCCceEEEe
Confidence            87533    44555669999999988855554

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=1.2e-06  Score=94.48  Aligned_cols=172  Identities=18%  Similarity=0.161  Sum_probs=130.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEECC-CCCEEEEEeCC--CeEEEEECCCCeEEEEEecCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFSP-DGKTLASTHGD--HTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~-------gH~~~Vt~lafSP-DG~~LaSgS~D--gtVrVWDl~tg~~l~~l~gH~  149 (730)
                      ....|+++..+|.+++|..+.+.+.       .-...+..+.-++ +..++++|+..  ..++|||++..+.+..-+.-.
T Consensus       114 ~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp  193 (412)
T KOG3881|consen  114 ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP  193 (412)
T ss_pred             cCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence            4567889999999999998854211       1123466666666 34466778888  889999999886665444322


Q ss_pred             ---------CCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCC-eEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EE
Q 004785          150 ---------RTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGHK-LY  215 (730)
Q Consensus       150 ---------~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg-~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~  215 (730)
                               -.++.+.|-+ +  ...|+++..-+.|++||.+.+ +++..+. ...++.++...|+|+++++|...+ +.
T Consensus       194 nD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~  272 (412)
T KOG3881|consen  194 NDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA  272 (412)
T ss_pred             CccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence                     1355788988 6  789999999999999999975 4566666 457899999999999999998655 99


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .||++.+....  ..+.+..+.|+++..+|.+++++.++
T Consensus       273 ~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~G  309 (412)
T KOG3881|consen  273 KFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCG  309 (412)
T ss_pred             eecccCceeec--cccCCccCCcceEEEcCCCceEEeec
Confidence            99999988644  23667788999999999999655554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=98.63  E-value=6.6e-06  Score=87.35  Aligned_cols=141  Identities=17%  Similarity=0.164  Sum_probs=95.6

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCC----CCCCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKY----CPLSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t----~~L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+..|.-..|.....++.|.+|++..    +++..-..++..+.|||||+.|...+ .|-.|.||.+.+.+... ++-.+
T Consensus        55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK  133 (447)
T KOG4497|consen   55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPK  133 (447)
T ss_pred             eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccc
Confidence            34445556666777899999999864    46778888999999999997666555 48899999998876432 33334


Q ss_pred             CCcEEEEEccCCCCEEEEEeC-C-----------------------------------CcEEEEECCCCeEEEEecCCCC
Q 004785          150 RTPWVVRFHPLNPTIIASGSL-D-----------------------------------HEVRLWNASTAECIGSRDFYRP  193 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~-D-----------------------------------gtVrLWDl~tg~~i~~l~h~~~  193 (730)
                      ..+..++|+| ++++.+.++. |                                   +.+-+||---.-.+..+.-.-.
T Consensus       134 ~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG  212 (447)
T KOG4497|consen  134 TNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLG  212 (447)
T ss_pred             cCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccc
Confidence            4568899999 8887776543 2                                   1122333211111112223346


Q ss_pred             eEEEEEcCCCCEEEEEECCe-EEEE
Q 004785          194 IASIAFHASGELLAVASGHK-LYIW  217 (730)
Q Consensus       194 V~sVafSPdG~~LAsgSdd~-I~VW  217 (730)
                      +..++|+|.+++|++|+.|. +||-
T Consensus       213 ~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  213 LKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             eeEEEeccccceEEeeccchhhhhh
Confidence            88999999999999999553 5553

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.63  E-value=2.1e-05  Score=86.25  Aligned_cols=164  Identities=14%  Similarity=0.188  Sum_probs=108.9

Q ss_pred             CeEEEEeC--CCCCCC-----CCCCCeEEEEECCCCCEEEEEeC----CCeEEEEECCC--Ce--EEEEEecCCCCcEEE
Q 004785           91 ESLHHLRP--KYCPLS-----PPPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQT--GS--CLKVLHGHRRTPWVV  155 (730)
Q Consensus        91 gsIrlWd~--~t~~L~-----gH~~~Vt~lafSPDG~~LaSgS~----DgtVrVWDl~t--g~--~l~~l~gH~~~V~sV  155 (730)
                      +.|..|++  ++++|.     .-......++++|++++|++...    ++.|..|++..  ++  .+............+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            45666655  333221     12334567899999999999977    46898888765  33  233333344456779


Q ss_pred             EEccCCCCEEEEEe-CCCcEEEEECCC-CeEEEE---ec-----------CCCCeEEEEEcCCCCEEEEEE--CCeEEEE
Q 004785          156 RFHPLNPTIIASGS-LDHEVRLWNAST-AECIGS---RD-----------FYRPIASIAFHASGELLAVAS--GHKLYIW  217 (730)
Q Consensus       156 afSP~dg~lLaSgS-~DgtVrLWDl~t-g~~i~~---l~-----------h~~~V~sVafSPdG~~LAsgS--dd~I~VW  217 (730)
                      +++| ++++++++. .+++|.++++.. |.....   +.           ......++.|+|||++|++..  .+.|++|
T Consensus        93 ~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   93 AVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            9999 777777776 589999999987 443322   21           234678999999999999887  4569999


Q ss_pred             EcCCCcc-ccC-CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          218 RYNMREE-TSS-PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       218 Dl~t~~~-~~~-~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ++..... +.. ...........+.+.|+|+|+++.+..+
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e  211 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE  211 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC
Confidence            9977652 211 1123345677899999999998887765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.62  E-value=2.1e-06  Score=96.40  Aligned_cols=157  Identities=13%  Similarity=0.234  Sum_probs=117.2

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC
Q 004785          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY  191 (730)
Q Consensus       112 ~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~  191 (730)
                      +++++.-..-|+.++....|+-++++.|+.+..|+...+.+++|..++ -..+|++|+.||.|..||.++...+..+...
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~  216 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAA  216 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecc
Confidence            344443222344455556788899999999999998889999999999 8899999999999999999988776665422


Q ss_pred             ------------CCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecC--CCCeEEEEEccC--CCeEEEEE
Q 004785          192 ------------RPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPH--AAPLLLTA  254 (730)
Q Consensus       192 ------------~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPd--G~~Llatg  254 (730)
                                  ..|+++.|+-+|-.+++|+. +.|.|||++..+.+    ....|  .-+|..+.|.+.  +..+++..
T Consensus       217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl----~~kdh~~e~pi~~l~~~~~~~q~~v~S~D  292 (703)
T KOG2321|consen  217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL----LVKDHGYELPIKKLDWQDTDQQNKVVSMD  292 (703)
T ss_pred             cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce----eecccCCccceeeecccccCCCceEEecc
Confidence                        24999999999999999985 55999999998753    35555  447888999775  34455443


Q ss_pred             e----eCCccCCCcceeEeccCC
Q 004785          255 E----VNDLDSSESSLTLATSPG  273 (730)
Q Consensus       255 s----vwdl~s~~~~~~l~t~sG  273 (730)
                      +    +|+-..+.....+....+
T Consensus       293 k~~~kiWd~~~Gk~~asiEpt~~  315 (703)
T KOG2321|consen  293 KRILKIWDECTGKPMASIEPTSD  315 (703)
T ss_pred             hHHhhhcccccCCceeeccccCC
Confidence            3    888777776655544433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=98.60  E-value=1e-06  Score=101.84  Aligned_cols=171  Identities=16%  Similarity=0.178  Sum_probs=121.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----------CC------CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCC---Ce-
Q 004785           82 RGLASWVEAESLHHLRPKYCP----------LS------PPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQT---GS-  140 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~----------L~------gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~t---g~-  140 (730)
                      ..+++++.||+|..|+.+.-.          ..      .....+++++|.+ +-..++.|+++|.|..-+-..   .. 
T Consensus       306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence            569999999999999876320          11      2234689999998 677899999999998733222   21 


Q ss_pred             ----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CCeEEEEec-CCCCeEEEEEcCCCC-EEEEEE-CC
Q 004785          141 ----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRD-FYRPIASIAFHASGE-LLAVAS-GH  212 (730)
Q Consensus       141 ----~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~i~~l~-h~~~V~sVafSPdG~-~LAsgS-dd  212 (730)
                          ....+..|.+.|+++.++|....+|++++ |.+|+||.-. ...++..+. +...+.+++|||--. .++++. ++
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G  464 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDG  464 (555)
T ss_pred             ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCC
Confidence                23355678899999999997778888877 9999999987 555555544 556699999999776 444554 45


Q ss_pred             eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       213 ~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .|.|||+....... .....-+......+.|+++|+.++++.
T Consensus       465 ~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd  505 (555)
T KOG1587|consen  465 NLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGD  505 (555)
T ss_pred             ceehhhhhccccCC-cccccccccccceeecCCCCcEEEEec
Confidence            59999997765422 122223355667888898899655543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.59  E-value=2.9e-06  Score=89.70  Aligned_cols=162  Identities=14%  Similarity=0.130  Sum_probs=111.5

Q ss_pred             CCeEEEEeCCCCC-C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecCCCCcEEEEEccC-CCCE
Q 004785           90 AESLHHLRPKYCP-L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGHRRTPWVVRFHPL-NPTI  164 (730)
Q Consensus        90 DgsIrlWd~~t~~-L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH~~~V~sVafSP~-dg~l  164 (730)
                      ..+|-+||-...+ +  ..-...|.++.+++|  +|++. ....|+||.+. +.+.++.+.....+=--.+..|. +..+
T Consensus        74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            4568888833221 1  134567888888754  45554 45799999987 45666666433211112344442 2334


Q ss_pred             EEE-EeCCCcEEEEECCCCeE---EEEecCCCCeEEEEEcCCCCEEEEEEC-Ce-EEEEEcCCCccccCCeEEecCCCCe
Q 004785          165 IAS-GSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHASGELLAVASG-HK-LYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       165 LaS-gS~DgtVrLWDl~tg~~---i~~l~h~~~V~sVafSPdG~~LAsgSd-d~-I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      |+. |-.-|.|+|-|+...+.   .....|...|.+++.+-+|..||++|. |+ |||||..+++.+.+. ........|
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~-RRG~d~A~i  229 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL-RRGVDRADI  229 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee-ecCCchheE
Confidence            443 55678999999987655   555679999999999999999999995 44 999999999876521 112235689


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004785          239 RAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgs  255 (730)
                      ++++|||+..+|+++++
T Consensus       230 y~iaFSp~~s~LavsSd  246 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSD  246 (346)
T ss_pred             EEEEeCCCccEEEEEcC
Confidence            99999999998888765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.58  E-value=2.5e-06  Score=94.70  Aligned_cols=134  Identities=13%  Similarity=0.145  Sum_probs=95.5

Q ss_pred             CEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEE
Q 004785          120 KTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIA  198 (730)
Q Consensus       120 ~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVa  198 (730)
                      +++ ++-..++.|.+.|..+.+.+..+.........+.|+| ++++++.++.|+.|.++|+.+++.+..+.......+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence            444 4455689999999999999999986655444578999 89999999999999999999999999998888889999


Q ss_pred             EcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEE
Q 004785          199 FHASGELLAVAS--GHKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       199 fSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l~----~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +++||++++++.  .+.+.|+|..+.+.+.......    .....+.++..+|....++++.
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence            999999999987  5679999999887654111100    0234677888899888666553

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.57  E-value=6.4e-06  Score=98.99  Aligned_cols=157  Identities=18%  Similarity=0.149  Sum_probs=109.9

Q ss_pred             CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc
Q 004785          102 PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE  173 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt  173 (730)
                      .|..|...|..++.+++ +.+|++||+||+||+||++.-       +...++.-....+.++.+.+ +++.+|.++.||.
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGS 1121 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCe
Confidence            46789999999999884 599999999999999998541       23334444567789999999 8999999999999


Q ss_pred             EEEEECCCC--e-----EEEEec--CCCCeEE-EEEcC-CCC-EEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEE
Q 004785          174 VRLWNASTA--E-----CIGSRD--FYRPIAS-IAFHA-SGE-LLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRA  240 (730)
Q Consensus       174 VrLWDl~tg--~-----~i~~l~--h~~~V~s-VafSP-dG~-~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~s  240 (730)
                      |++.++...  +     +....+  ..+.+.+ -+|.. .+. .|+.+.+ ++|..||+++....... ......+.|++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l-k~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL-KNQLRHGLVTS 1200 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh-hcCccccceeE
Confidence            999998752  1     111111  2233322 23332 233 5666665 55999999987654422 12223468999


Q ss_pred             EEEccCCCeEEEEEe-----eCCcc
Q 004785          241 VHFHPHAAPLLLTAE-----VNDLD  260 (730)
Q Consensus       241 VaFSPdG~~Llatgs-----vwdl~  260 (730)
                      ++.+|.+.+++.+..     .||++
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEee
Confidence            999999998887654     66666

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=1.3e-05  Score=90.61  Aligned_cols=185  Identities=14%  Similarity=0.066  Sum_probs=118.5

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-EEEEEeC---CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSL---DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE  204 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-lLaSgS~---DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~  204 (730)
                      ..|.+-|..... .+.+.... ......|+| +++ +++..+.   +..|+++|+.+++........+.+....|+|||+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCc-eeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence            356665654333 34343333 677899999 665 4554433   3569999999998877776667777889999999


Q ss_pred             EEEEEEC--C--eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCC
Q 004785          205 LLAVASG--H--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP  280 (730)
Q Consensus       205 ~LAsgSd--d--~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~  280 (730)
                      .|+...+  +  .|+++|+..++..    .+..+........|+|||+.|+.+++..               |.     +
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~---------------g~-----~  301 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVSDRL---------------GY-----P  301 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEECCC---------------CC-----c
Confidence            7776552  2  3999998776532    2333333334568999999998877421               11     3


Q ss_pred             eEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCC----C-cccceeecCCCcceeeec
Q 004785          281 VICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDS----G-ATRTQQSLRSSSSVRLLT  346 (730)
Q Consensus       281 ~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~ds----g-s~~~~~~~~ss~~~~l~~  346 (730)
                      .++..+..++....+...  +    ...+.|||||++|++.....+.    + ..++..++++...++|+.
T Consensus       302 ~Iy~~dl~~g~~~rlt~~--g----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~  366 (419)
T PRK04043        302 NIFMKKLNSGSVEQVVFH--G----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA  366 (419)
T ss_pred             eEEEEECCCCCeEeCccC--C----CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence            566666555444333221  1    1135899999999997654432    2 467788887777666654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.52  E-value=1.9e-06  Score=102.04  Aligned_cols=175  Identities=14%  Similarity=0.127  Sum_probs=132.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-C--CCCCCC-----eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP-L--SPPPRS-----TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~-L--~gH~~~-----Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ...+.++.+..++.+-+||..... +  ..+...     ..-+-++++.-++++|+--+.|.+|+....+.-..+.+|.+
T Consensus        97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen   97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCC
Confidence            356778888999999999987552 1  122222     22334566777899999999999999873332235899999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS  227 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~--~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~  227 (730)
                      .|..+.|+- ++.++++.|.|.++++|++.+.+...  -++|..+|..++|+|+  .+++++. -..++|+.+.....  
T Consensus       177 ~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~--  251 (967)
T KOG0974|consen  177 SIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE--  251 (967)
T ss_pred             ceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh--
Confidence            999999998 99999999999999999999987665  3789999999999998  7888884 55999976654432  


Q ss_pred             CeEEecC-CCCeEEEEEccCCCeEEEEEeeCCcc
Q 004785          228 PRIVLRT-RRSLRAVHFHPHAAPLLLTAEVNDLD  260 (730)
Q Consensus       228 ~~~l~~h-~~~V~sVaFSPdG~~Llatgsvwdl~  260 (730)
                        .+.+| ...+..++..++...+++.+.+..++
T Consensus       252 --~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  252 --VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             --hhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence              45555 56789999988877666666533333

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.50  E-value=3.1e-05  Score=84.98  Aligned_cols=181  Identities=16%  Similarity=0.175  Sum_probs=114.8

Q ss_pred             EEEEecCCCEEEEEe-CCCeEEEEeCCC-CCC-----------------CCCCCCeEEEEECCCCCEEEEEeC-CCeEEE
Q 004785           74 FEAGRDARRGLASWV-EAESLHHLRPKY-CPL-----------------SPPPRSTIAAAFSPDGKTLASTHG-DHTVKI  133 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs-~DgsIrlWd~~t-~~L-----------------~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrV  133 (730)
                      -.+...+++.|+... .++.|.++++.. +.+                 .......+++.|+|||++|++... ...|.+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            344445566666555 578888888764 211                 112345789999999999888744 348999


Q ss_pred             EECCCCe--EE--EEEe-cCCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECC--CCeEEE--Eec-----C--CCCeEE
Q 004785          134 IDCQTGS--CL--KVLH-GHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNAS--TAECIG--SRD-----F--YRPIAS  196 (730)
Q Consensus       134 WDl~tg~--~l--~~l~-gH~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~--tg~~i~--~l~-----h--~~~V~s  196 (730)
                      |++....  ..  ..++ ........+.|+| +++++ +....+++|.++++.  +++...  .+.     .  ......
T Consensus       171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             EEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence            9987654  22  2232 2334578899999 66555 556678899999988  453322  221     1  125788


Q ss_pred             EEEcCCCCEEEEEE--CCeEEEEEcCCC-ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          197 IAFHASGELLAVAS--GHKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       197 VafSPdG~~LAsgS--dd~I~VWDl~t~-~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |.++|||++|+++.  .+.|.+|+++.. ..+.............+.+.|+|+|++|+++..
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence            99999999999988  345999999433 222212222223456899999999998888764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.50  E-value=3.1e-06  Score=88.71  Aligned_cols=163  Identities=12%  Similarity=0.160  Sum_probs=118.8

Q ss_pred             EEEEEeCCCeEEEEeCCCC----CCC---CCCC---CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCC
Q 004785           83 GLASWVEAESLHHLRPKYC----PLS---PPPR---STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRR  150 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~----~L~---gH~~---~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~~  150 (730)
                      .+...-..|.|.++.....    .|.   ...-   .-.++.|++.+..++++-.+|.+.+-+.......  +.++.|.-
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            4555566777777765432    121   1111   2457889999999999988999986665555433  47899999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEEEE--ecCCCCeEEEEEcC-CCCEEEEEE-CCeEEEEEcCCCccc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGS--RDFYRPIASIAFHA-SGELLAVAS-GHKLYIWRYNMREET  225 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~--l~h~~~V~sVafSP-dG~~LAsgS-dd~I~VWDl~t~~~~  225 (730)
                      ..+...|+-.+.+++++|+.|+.+..||++. ++.+..  ..|...|.+|.-+| ++.++++|+ |+.|++||.++-.+ 
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k-  245 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK-  245 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC-
Confidence            9999999988889999999999999999993 344433  34788899998876 577999999 55599999985543 


Q ss_pred             cCCeEEecCCCCeEEEEEccCCC
Q 004785          226 SSPRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPdG~  248 (730)
                        +.....-.+.|+.+.++|.-.
T Consensus       246 --Pl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  246 --PLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             --ccccCccccceEEEEecchhh
Confidence              222333457899999998644

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.49  E-value=1.6e-06  Score=90.77  Aligned_cols=148  Identities=15%  Similarity=0.066  Sum_probs=117.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC-CCeEEEE-Eec
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLKV-LHG  147 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~-tg~~l~~-l~g  147 (730)
                      .+..+..+++...+|.+.+-+....      ..++|.-...-+.|+. +.+++++|++|+.+.-||++ .++.+.. .+.
T Consensus       129 ~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv  208 (339)
T KOG0280|consen  129 ISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV  208 (339)
T ss_pred             eeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee
Confidence            4456777888888888875554432      5778999999999997 56789999999999999998 3444433 577


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CCeEEEEecCCCCeEEEEEcCCC--CEEEEEECCeEEEEEcCCCcc
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGSRDFYRPIASIAFHASG--ELLAVASGHKLYIWRYNMREE  224 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~i~~l~h~~~V~sVafSPdG--~~LAsgSdd~I~VWDl~t~~~  224 (730)
                      |...|.+|.-+|..+.++++|+.|..|++||.+ .++++......+.|..+.++|.-  ++|+++-.++.+|-+......
T Consensus       209 H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~  288 (339)
T KOG0280|consen  209 HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVL  288 (339)
T ss_pred             eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccccc
Confidence            889999999998788999999999999999999 57888877788999999999954  345555566677777765543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=2.5e-06  Score=92.14  Aligned_cols=122  Identities=15%  Similarity=0.189  Sum_probs=106.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCcEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWV  154 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~~~V~s  154 (730)
                      ...++++..-+.+++||...++     +.--..+|+++...|+|++|++|..-+.+..+|++.++.+.. +++..+.|.+
T Consensus       216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs  295 (412)
T KOG3881|consen  216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS  295 (412)
T ss_pred             CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence            6789999999999999998762     334466799999999999999999999999999999998876 8999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCC
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG  203 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG  203 (730)
                      |..+| ...++++++.|..|||+|+.+.+.+...-....++++-+.++-
T Consensus       296 ih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  296 IHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             EEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            99999 8899999999999999999998877766666777788776653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.38  E-value=2e-06  Score=93.27  Aligned_cols=133  Identities=19%  Similarity=0.309  Sum_probs=96.2

Q ss_pred             CCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCCCCE
Q 004785           89 EAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTI  164 (730)
Q Consensus        89 ~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~dg~l  164 (730)
                      +...+.+|....+   .+.||-..+++++|+||+++|+++..|..|+|-....-..+..| -||+..|..++.-+  +..
T Consensus       130 D~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~  207 (390)
T KOG3914|consen  130 DVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYL  207 (390)
T ss_pred             CceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Cce
Confidence            3445666665523   47799999999999999999999999999999887665555554 58999999999976  566


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEecCCC---CeE----------EEEEcCCCCEEEEEECCe-EEEEEcCCCc
Q 004785          165 IASGSLDHEVRLWNASTAECIGSRDFYR---PIA----------SIAFHASGELLAVASGHK-LYIWRYNMRE  223 (730)
Q Consensus       165 LaSgS~DgtVrLWDl~tg~~i~~l~h~~---~V~----------sVafSPdG~~LAsgSdd~-I~VWDl~t~~  223 (730)
                      |+|++.|++|++||+.+|+++..+....   .|.          .++|....+.++..+++. |+++......
T Consensus       208 LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~  280 (390)
T KOG3914|consen  208 LLSGSGDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALP  280 (390)
T ss_pred             eeecCCCCcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCC
Confidence            9999999999999999999886654221   111          122322334444455555 6666665544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=9.8e-06  Score=91.02  Aligned_cols=148  Identities=17%  Similarity=0.300  Sum_probs=105.8

Q ss_pred             eCCCeEEEEeCC--CCCCC-CCCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCC
Q 004785           88 VEAESLHHLRPK--YCPLS-PPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (730)
Q Consensus        88 s~DgsIrlWd~~--t~~L~-gH~~~Vt~lafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg  162 (730)
                      -...++++++.+  .+.+. ...++|+++.|+++|+-++++-.  --+|.|+|++ ++.+..|  -.++-+++-|+| .+
T Consensus       248 YGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g  323 (566)
T KOG2315|consen  248 YGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HG  323 (566)
T ss_pred             cccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CC
Confidence            345567777776  22222 34789999999999988776644  5689999975 5555555  456678899999 88


Q ss_pred             CEEEEEeC---CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEEe
Q 004785          163 TIIASGSL---DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVL  232 (730)
Q Consensus       163 ~lLaSgS~---DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-------dd~I~VWDl~t~~~~~~~~~l~  232 (730)
                      ++++.++.   -|.|-|||+.+.+++..+..... +-..|+|||+++++++       |++++||++......      .
T Consensus       324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~------~  396 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH------E  396 (566)
T ss_pred             CEEEEeecCCCCCceEEEeccchhhccccccCCc-eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee------h
Confidence            98888765   47899999999888777664443 4578999999999887       566999998654321      1


Q ss_pred             cC-CCCeEEEEEccC
Q 004785          233 RT-RRSLRAVHFHPH  246 (730)
Q Consensus       233 ~h-~~~V~sVaFSPd  246 (730)
                      .+ ......+.|-|-
T Consensus       397 ~~f~sEL~qv~W~P~  411 (566)
T KOG2315|consen  397 KMFKSELLQVEWRPF  411 (566)
T ss_pred             hhhhHhHhheeeeec
Confidence            11 114666777653

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=98.35  E-value=1.9e-05  Score=92.44  Aligned_cols=141  Identities=15%  Similarity=0.147  Sum_probs=109.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--C--eEEEEEecC
Q 004785           81 RRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--G--SCLKVLHGH  148 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t--g--~~l~~l~gH  148 (730)
                      +..+.....+..+.+|...+.        .-..|.-.++|.++||+++++|++..||.|.+|.--.  +  .....+.=|
T Consensus       171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH  250 (792)
T KOG1963|consen  171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH  250 (792)
T ss_pred             CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence            344444455667778877652        1345777799999999999999999999999996322  2  223556668


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR  222 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~  222 (730)
                      ...|.+++|++ ++.+++||+..+.+-+|.+.+++....-.....|..+.++||+.+.++.. |+.|.+....+.
T Consensus       251 ~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  251 HDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             ccccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            88999999999 99999999999999999999998444445778999999999999776665 666888776443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.34  E-value=4.1e-05  Score=84.57  Aligned_cols=168  Identities=13%  Similarity=0.064  Sum_probs=127.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      .|..++..+ .|+.-+.+...+  .-.+|.+.|.-..+.-++.-++.|..|| .+-|+|..+++ ++.+...-+.|.++.
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~  408 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVK  408 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEE
Confidence            444554444 444444444333  2347888899999999999999999999 89999998887 556666778899999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-----CeEEEEEcCCCccccCCeE
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-----HKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-----d~I~VWDl~t~~~~~~~~~  230 (730)
                      .++ +++.++.+.....|.+.|+.+|.....-. ..+-|....|||+++++|.+--     ..|+++|+..++...    
T Consensus       409 vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~----  483 (668)
T COG4946         409 VSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD----  483 (668)
T ss_pred             EcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----
Confidence            999 99999999988999999999998765533 5567999999999999999862     239999999887533    


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEE
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .......-.+-+|.|||++|..-+
T Consensus       484 vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         484 VTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ecCCcccccCcccCCCCcEEEEEe
Confidence            222333445678999999876544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.33  E-value=0.0013  Score=71.13  Aligned_cols=144  Identities=15%  Similarity=0.200  Sum_probs=104.9

Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEECCC-CeEEE--EEecCCCC----------cEEEEEccCCCCEEEEEeC-CCcEE
Q 004785          111 IAAAFSPDGKTLASTHG-DHTVKIIDCQT-GSCLK--VLHGHRRT----------PWVVRFHPLNPTIIASGSL-DHEVR  175 (730)
Q Consensus       111 t~lafSPDG~~LaSgS~-DgtVrVWDl~t-g~~l~--~l~gH~~~----------V~sVafSP~dg~lLaSgS~-DgtVr  175 (730)
                      +-++++++|++|+++.. -+.|.++-++. |....  .+..|.+.          +....|.| +++++++... --.|.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~  170 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIF  170 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEE
Confidence            78999999999999977 58999999855 54322  22345555          88899999 8888887653 23599


Q ss_pred             EEECCCCeEEEE----ecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC-ccccCCeEE------ecCCCCeEEEE
Q 004785          176 LWNASTAECIGS----RDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR-EETSSPRIV------LRTRRSLRAVH  242 (730)
Q Consensus       176 LWDl~tg~~i~~----l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~-~~~~~~~~l------~~h~~~V~sVa  242 (730)
                      +|++..|+....    +.....-..|.|+|+|++.++.+  +.+|-+|.++.. ........+      .....+...|.
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            999998876443    33456778999999999999888  677999999874 211111111      12355778999


Q ss_pred             EccCCCeEEEEEe
Q 004785          243 FHPHAAPLLLTAE  255 (730)
Q Consensus       243 FSPdG~~Llatgs  255 (730)
                      .++||++|.++-.
T Consensus       251 is~dGrFLYasNR  263 (346)
T COG2706         251 ISPDGRFLYASNR  263 (346)
T ss_pred             ECCCCCEEEEecC
Confidence            9999998887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.31  E-value=3.1e-05  Score=85.56  Aligned_cols=130  Identities=18%  Similarity=0.141  Sum_probs=110.1

Q ss_pred             CCCEEEEEeCCC-eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAE-SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~Dg-sIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ....++.|..|+ .+.++|..++.   +.+.-+.|.++..++||++++.+-+...+.+.|+.+|+....=+...+-|+..
T Consensus       370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf  449 (668)
T COG4946         370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDF  449 (668)
T ss_pred             CCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEE
Confidence            444788888888 89999999874   66778899999999999999999888999999999998665556667889999


Q ss_pred             EEccCCCCEEEEEeCCC----cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785          156 RFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       156 afSP~dg~lLaSgS~Dg----tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS  210 (730)
                      .||| ++++++.+--+|    .|+++|+.+++..........-.+-+|+|||++|..-+
T Consensus       450 ~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         450 DWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            9999 999999876554    58999999998887766666667889999999998876

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=2.4e-05  Score=88.45  Aligned_cols=140  Identities=11%  Similarity=0.098  Sum_probs=120.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPL------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      +...++-|...|.|.+|+...+.+      ..|.+.|.++.++.+-..|.+++.|..+..|+...+..++.+++....+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            456777888899999999877632      47999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCC-----CCEEEEEECC--eEEEEEcCCC
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHAS-----GELLAVASGH--KLYIWRYNMR  222 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPd-----G~~LAsgSdd--~I~VWDl~t~  222 (730)
                      ++..+| ++.++++++.  +|++||+.+++.+..|. |.+.|+++.|--+     |.++.++...  .+.+|-++..
T Consensus       149 sl~is~-D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  149 SLCISP-DGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             eEEEcC-CCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            999999 7999988874  69999999999988875 8899999999877     7777766532  3888877653

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.20  E-value=6.4e-05  Score=78.26  Aligned_cols=175  Identities=9%  Similarity=0.002  Sum_probs=120.5

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCC--eEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEE--EecCCCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC--PLSPPPRS--TIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKV--LHGHRRT  151 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~--Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g~~l~~--l~gH~~~  151 (730)
                      +..-.+..++.|.++++.++..+  +..-|...  +..+.+++|++++++.++...|..|.+.. ++.+..  .+.-++.
T Consensus       126 d~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  126 DLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             ccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence            34556677788888888887755  33345444  88999999999999999999999998865 333332  2334445


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEE-----ecCCCCeEEEEEcCCCC--EEEEEE-CCeEEEEEcCCC
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGS-----RDFYRPIASIAFHASGE--LLAVAS-GHKLYIWRYNMR  222 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~-----l~h~~~V~sVafSPdG~--~LAsgS-dd~I~VWDl~t~  222 (730)
                      -.+..|+. ....+|++..||++.|||++... +...     -.|++.+..+.|++.|.  +|+..- -..++|.|+++.
T Consensus       206 gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  206 GFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             ceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence            57889998 88999999999999999998643 2221     13789999999999775  444433 344999999988


Q ss_pred             ccccCC----eEEecCC-CCeEEEEEccCCCeEEEEE
Q 004785          223 EETSSP----RIVLRTR-RSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       223 ~~~~~~----~~l~~h~-~~V~sVaFSPdG~~Llatg  254 (730)
                      ...+..    .....|. ..|..-.|+.++..+.+..
T Consensus       285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             ceeeEEecCccccccccccccccccccCCCccccccc
Confidence            653311    1111222 2366666776665444433

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.18  E-value=0.0014  Score=72.47  Aligned_cols=210  Identities=12%  Similarity=0.097  Sum_probs=121.2

Q ss_pred             CeEEEEeCCCCCCCC----CCCCeEEEEECCCCCEEEEEeC----------CCeEEEEECCCCeEEEEEecC-------C
Q 004785           91 ESLHHLRPKYCPLSP----PPRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH-------R  149 (730)
Q Consensus        91 gsIrlWd~~t~~L~g----H~~~Vt~lafSPDG~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH-------~  149 (730)
                      ++|.+.|..+.++.+    -.. -..+ +||||+.|+.+..          +..|.+||+.+++.+..+.--       .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFL-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCC-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            567777766653221    111 1224 9999999988765          689999999999999888632       2


Q ss_pred             CCcEEEEEccCCCCEEEEEe-C-CCcEEEEECCCCeEEEEecCCCC--------------------------------eE
Q 004785          150 RTPWVVRFHPLNPTIIASGS-L-DHEVRLWNASTAECIGSRDFYRP--------------------------------IA  195 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS-~-DgtVrLWDl~tg~~i~~l~h~~~--------------------------------V~  195 (730)
                      .....++++| ++++++... . +..|-+.|+.+++.+..+.-.+.                                ..
T Consensus       105 ~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       105 TYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             CccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence            2334789999 887777655 3 78999999998877554321110                                01


Q ss_pred             EE--------------EEcC-CCCEEEEEECCeEEEEEcCCCccccC-CeEEe--------cCCCCeEEEEEccCCCeEE
Q 004785          196 SI--------------AFHA-SGELLAVASGHKLYIWRYNMREETSS-PRIVL--------RTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       196 sV--------------afSP-dG~~LAsgSdd~I~VWDl~t~~~~~~-~~~l~--------~h~~~V~sVaFSPdG~~Ll  251 (730)
                      ..              .|.+ +|+++++...+.|++.|+........ ...+.        -....+.-+++++++++++
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            11              1223 67777777777788887544321110 00000        0122334488888888776


Q ss_pred             EEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCC-EEEE
Q 004785          252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE-RISL  320 (730)
Q Consensus       252 atgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~-rI~~  320 (730)
                      ....-..             .|-.+.+...+.+.|..+.+......    ...+.+...|++|++ ++++
T Consensus       264 V~~~~~~-------------~~thk~~~~~V~ViD~~t~kvi~~i~----vG~~~~~iavS~Dgkp~lyv  316 (352)
T TIGR02658       264 LLADQRA-------------KWTHKTASRFLFVVDAKTGKRLRKIE----LGHEIDSINVSQDAKPLLYA  316 (352)
T ss_pred             EEecCCc-------------cccccCCCCEEEEEECCCCeEEEEEe----CCCceeeEEECCCCCeEEEE
Confidence            6432000             00011133355555554444332221    123567899999999 7665

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=7.1e-06  Score=91.45  Aligned_cols=151  Identities=17%  Similarity=0.113  Sum_probs=112.6

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l  142 (730)
                      ..++.++...+++.++|++|++|.++..           ++..|+.+|.++.|-.|-+.++++  |+-|.+||.--|+.+
T Consensus       740 ai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~L  817 (1034)
T KOG4190|consen  740 AIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLL  817 (1034)
T ss_pred             HHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchh
Confidence            3445678889999999999999998642           467899999999999988888765  889999998777766


Q ss_pred             EEEe--cCCCCcEEEEEccC-CCCEEE-EEeCCCcEEEEECCCCeEEEEec------CCCCeEEEEEcCCCCEEEEEE-C
Q 004785          143 KVLH--GHRRTPWVVRFHPL-NPTIIA-SGSLDHEVRLWNASTAECIGSRD------FYRPIASIAFHASGELLAVAS-G  211 (730)
Q Consensus       143 ~~l~--gH~~~V~sVafSP~-dg~lLa-SgS~DgtVrLWDl~tg~~i~~l~------h~~~V~sVafSPdG~~LAsgS-d  211 (730)
                      ..+.  ...+.+..+..-+. +..++. -++...+|+++|.+.++.+..+.      .+.-+.+++.-+.|++|+.+- +
T Consensus       818 aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn  897 (1034)
T KOG4190|consen  818 AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN  897 (1034)
T ss_pred             HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcC
Confidence            5332  11233444444442 233443 44788999999999887655432      335688999999999999885 5


Q ss_pred             CeEEEEEcCCCcccc
Q 004785          212 HKLYIWRYNMREETS  226 (730)
Q Consensus       212 d~I~VWDl~t~~~~~  226 (730)
                      +.|.+.|.++++.+.
T Consensus       898 Gci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  898 GCIAILDARNGKVIN  912 (1034)
T ss_pred             CcEEEEecCCCceec
Confidence            569999999998654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.13  E-value=6.7e-06  Score=60.53  Aligned_cols=39  Identities=31%  Similarity=0.775  Sum_probs=36.9

Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (730)
Q Consensus       139 g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (730)
                      |+++..+++|.+.|++|+|+| ++++|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            467899999999999999999 899999999999999998

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.10  E-value=1.4e-05  Score=88.44  Aligned_cols=177  Identities=15%  Similarity=0.101  Sum_probs=135.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCC-CeE--EEEEecC
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQT-GSC--LKVLHGH  148 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~t-g~~--l~~l~gH  148 (730)
                      ..+..|++++.|..|.+||-..+.     ..+|...|....|-|  +.+.|++++.||.|++=.+.. +.+  .+.+..|
T Consensus       152 ~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h  231 (559)
T KOG1334|consen  152 QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH  231 (559)
T ss_pred             ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc
Confidence            478899999999999999966552     358999999999998  567899999999999977643 322  3556679


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCC---CeEEEEEcCCCC-EEEEEECCe-EEEEEc
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYR---PIASIAFHASGE-LLAVASGHK-LYIWRY  219 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~---~V~sVafSPdG~-~LAsgSdd~-I~VWDl  219 (730)
                      .+.|..++.-|....-|.+++.|+.+.-+|++.+.....+    .+..   ..+.++.+|... .+++++.+. +++||.
T Consensus       232 ~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~  311 (559)
T KOG1334|consen  232 EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQ  311 (559)
T ss_pred             cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcc
Confidence            9999999999988899999999999999999987654332    2223   567899999776 778887655 999998


Q ss_pred             CCCccccC---------CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          220 NMREETSS---------PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       220 ~t~~~~~~---------~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +.-.....         ........-.|++++|+.++.-++++.+
T Consensus       312 R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  312 RRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             cchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence            76543210         0111122457899999988887887766

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.09  E-value=2.8e-05  Score=86.20  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=117.5

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCC-CCEEEEEeCCCcEEEEEC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl  179 (730)
                      +|.+|.+.|..+.|+..|..|++|++|..|.+||-..++....| .+|...|....|-|.. ..-+++++.||.|++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            58899999999999999999999999999999999998877666 5899889888888743 356888999999998876


Q ss_pred             CCC-eEE---EEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCccccCCeEEecCCC---CeEEEEEccCCCeE
Q 004785          180 STA-ECI---GSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPHAAPL  250 (730)
Q Consensus       180 ~tg-~~i---~~l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~---~V~sVaFSPdG~~L  250 (730)
                      ... .+.   ....|.+.|.-++..|+.. -|.+++ |+.+.-+|++.............+..   ..+.++..|...+.
T Consensus       217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~  296 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE  296 (559)
T ss_pred             ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence            543 332   2235899999999999876 444555 44488899988764332222222333   56789999988877


Q ss_pred             EEEEe
Q 004785          251 LLTAE  255 (730)
Q Consensus       251 latgs  255 (730)
                      ++++.
T Consensus       297 faVgG  301 (559)
T KOG1334|consen  297 FAVGG  301 (559)
T ss_pred             cccCC
Confidence            77665

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.07  E-value=0.00019  Score=76.98  Aligned_cols=147  Identities=12%  Similarity=0.153  Sum_probs=105.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecC-----CCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGH-----RRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH-----~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      .|+.-|+++.++.|+..++++ +|-.|.+|+++--.   .+..++.+     +.-|++..|||..-+.++..+..|+|+|
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            678889999999999998887 67899999986432   22333433     3458889999988889999999999999


Q ss_pred             EECCCCeEE----EEec-------------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecC-----
Q 004785          177 WNASTAECI----GSRD-------------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT-----  234 (730)
Q Consensus       177 WDl~tg~~i----~~l~-------------h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h-----  234 (730)
                      .|++.....    +.+.             --..|..+.|+++|+++++-.--+|+|||++.....  .....-|     
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~p--v~t~~vh~~lr~  318 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKP--VETYPVHEYLRS  318 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCc--ceEEeehHhHHH
Confidence            999853221    1111             113678899999999999888788999999765431  1122222     


Q ss_pred             -------CCC---eEEEEEccCCCeEEEEE
Q 004785          235 -------RRS---LRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       235 -------~~~---V~sVaFSPdG~~Llatg  254 (730)
                             .+.   -..++|+.++.++++++
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGs  348 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGS  348 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEeccc
Confidence                   122   24688999998665544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.02  E-value=5.3e-06  Score=96.60  Aligned_cols=178  Identities=14%  Similarity=0.141  Sum_probs=125.6

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCC-C-eEEEEECCC-CeEEEEE
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGD-H-TVKIIDCQT-GSCLKVL  145 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~D-g-tVrVWDl~t-g~~l~~l  145 (730)
                      ...+.+.+...|+.|.-.|.|+++++.++.    ..+|...|+-+.-+.||..+++.+.- . ...+|++.+ +.....|
T Consensus      1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf 1184 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF 1184 (1516)
T ss_pred             eeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc
Confidence            334445578899999999999999999883    67899999999999999987766543 2 578999854 4555555


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-----~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~  220 (730)
                      .+    -.++.|+. ....-+.|..-....|||+.++..+.++     .....-+.+.|+|+.+++.--+    .+||++
T Consensus      1185 ~e----d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWDvR 1255 (1516)
T KOG1832|consen 1185 DE----DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWDVR 1255 (1516)
T ss_pred             cc----cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc----eeeeec
Confidence            43    34688987 4444444444456899999998776552     2233447889999988765322    579999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCC
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSE  263 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~  263 (730)
                      ..+.+..   +..-...+ .=.|+|+|..++..+++||+++..
T Consensus      1256 ~~~aIh~---FD~ft~~~-~G~FHP~g~eVIINSEIwD~RTF~ 1294 (1516)
T KOG1832|consen 1256 IPEAIHR---FDQFTDYG-GGGFHPSGNEVIINSEIWDMRTFK 1294 (1516)
T ss_pred             cHHHHhh---hhhheecc-cccccCCCceEEeechhhhhHHHH
Confidence            8865442   21111111 225999999999999999998543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.01  E-value=0.0005  Score=86.01  Aligned_cols=167  Identities=13%  Similarity=0.141  Sum_probs=104.6

Q ss_pred             EEEEeCCCeEEEEeCCCCC---CCC--C---------------CCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE
Q 004785           84 LASWVEAESLHHLRPKYCP---LSP--P---------------PRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCL  142 (730)
Q Consensus        84 L~Sgs~DgsIrlWd~~t~~---L~g--H---------------~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l  142 (730)
                      .++-...+.|+.+|..++.   +.+  .               -..-..++|+| ++.++++.+.++.|++||..++...
T Consensus       639 YVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~  718 (1057)
T PLN02919        639 YVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR  718 (1057)
T ss_pred             EEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            3444455778888876542   111  0               11346899999 5666677777899999999877543


Q ss_pred             EEEecC---------------CCCcEEEEEccCCCC-EEEEEeCCCcEEEEECCCCeEEEEe-------------c-C--
Q 004785          143 KVLHGH---------------RRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSR-------------D-F--  190 (730)
Q Consensus       143 ~~l~gH---------------~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~~l-------------~-h--  190 (730)
                       .+.+.               -.....|+|+| +++ ++++-+.++.|++||+.++......             + .  
T Consensus       719 -~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        719 -VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             -EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence             23211               12356799999 555 6777777899999999876532211             0 0  


Q ss_pred             ------CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCe----------EEecCCCCeEEEEEccCCCeEEE
Q 004785          191 ------YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPR----------IVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       191 ------~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~----------~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                            -.....++|+++|+++++-+ +++|++||..++.......          .....-.....++++++|+.+++
T Consensus       797 ~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             chhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence                  01235899999998655555 4569999998765421000          00111235678999999985544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.01  E-value=3.8e-05  Score=83.53  Aligned_cols=100  Identities=16%  Similarity=0.214  Sum_probs=76.7

Q ss_pred             EEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEcC
Q 004785          124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHA  201 (730)
Q Consensus       124 SgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafSP  201 (730)
                      .+++...+.+|....+. ...+-||-..++.|+|+| |+++++++..|..|++-.+..--.+..  ++|+.-|..++.-+
T Consensus       127 kagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~  204 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD  204 (390)
T ss_pred             ecCCceeeeeecccccC-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc
Confidence            33455666677666554 344568999999999999 889999999999999987765554544  57899999999886


Q ss_pred             CCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          202 SGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       202 dG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      +.. |++++ |++|++||+.+++.+.
T Consensus       205 ~~~-LlS~sGD~tlr~Wd~~sgk~L~  229 (390)
T KOG3914|consen  205 NYL-LLSGSGDKTLRLWDITSGKLLD  229 (390)
T ss_pred             Cce-eeecCCCCcEEEEecccCCccc
Confidence            554 56665 5669999999998753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.01  E-value=0.00032  Score=87.70  Aligned_cols=144  Identities=15%  Similarity=0.155  Sum_probs=100.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC------------CCC------CCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCe
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPL------------SPP------PRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGS  140 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L------------~gH------~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~  140 (730)
                      ++...++...++.|++||..++.+            .++      -.....++|+|||+.|+ +-+.++.|++||+.++.
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~  773 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG  773 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence            455666777788899999865421            111      12356799999998555 44567899999998765


Q ss_pred             EEEEEec---------------------CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC--------
Q 004785          141 CLKVLHG---------------------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--------  191 (730)
Q Consensus       141 ~l~~l~g---------------------H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~--------  191 (730)
                      ......+                     .-.....++|++ +++++++-..++.|++||..++......+..        
T Consensus       774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~  852 (1057)
T PLN02919        774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK  852 (1057)
T ss_pred             EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence            3211100                     011346899999 8889999899999999999888765443211        


Q ss_pred             ------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004785          192 ------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREE  224 (730)
Q Consensus       192 ------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~  224 (730)
                            .....++++++|+++++-+ ++.|++||+.+++.
T Consensus       853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                  2467899999998666555 45599999988764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.00  E-value=0.00022  Score=80.64  Aligned_cols=147  Identities=17%  Similarity=0.217  Sum_probs=99.2

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeC---C-CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc--EEE
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHG---D-HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE--VRL  176 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~---D-gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt--VrL  176 (730)
                      +..-...+..-+|+|+++.++..+.   . ..+.++|+.+++....+. -.+.-...+|+|++.+++++...|+.  |++
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~  266 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL  266 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence            3344556778899999998776633   3 469999999887544443 22333457999966666677777775  667


Q ss_pred             EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe----EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK----LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~----I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      .|+.++...+.....+.-..-.|+|||+.|+..+|..    |+++|.+.....+    +......-..-.|+|||++++.
T Consensus       267 ~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r----iT~~~~~~~~p~~SpdG~~i~~  342 (425)
T COG0823         267 MDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR----LTFSGGGNSNPVWSPDGDKIVF  342 (425)
T ss_pred             EcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE----eeccCCCCcCccCCCCCCEEEE
Confidence            7888777555333344444778999999999988533    8888887766422    2222222227789999999888


Q ss_pred             EE
Q 004785          253 TA  254 (730)
Q Consensus       253 tg  254 (730)
                      ..
T Consensus       343 ~~  344 (425)
T COG0823         343 ES  344 (425)
T ss_pred             Ee
Confidence            76

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.99  E-value=0.0012  Score=68.44  Aligned_cols=169  Identities=15%  Similarity=0.150  Sum_probs=107.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCC-CCCCeEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----CCCCc
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLSP-PPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTP  152 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~g-H~~~Vt~lafS-PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-----H~~~V  152 (730)
                      .+..+++-...+.|..|+..++...- .......+++. +++ .|+.+..+ .+.++|..+++....+..     .....
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~   88 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRP   88 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence            55566666678888888887764221 11127788888 565 45555554 455559999865544432     23457


Q ss_pred             EEEEEccCCCCEEEEEeCC--------CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004785          153 WVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR  222 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~D--------gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~  222 (730)
                      +.+++.| ++++.++....        +.|..++.. ++.......-...+.++|+||++.|++..  .+.|+.+++...
T Consensus        89 ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~  166 (246)
T PF08450_consen   89 NDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD  166 (246)
T ss_dssp             EEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Confidence            7899999 88888886543        568888887 66655555556678999999999888776  345999998644


Q ss_pred             cc-ccCCeEEecC-C--CCeEEEEEccCCCeEEE
Q 004785          223 EE-TSSPRIVLRT-R--RSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       223 ~~-~~~~~~l~~h-~--~~V~sVaFSPdG~~Lla  252 (730)
                      .. ......+... .  ...-.+++..+|+.+++
T Consensus       167 ~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va  200 (246)
T PF08450_consen  167 GGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA  200 (246)
T ss_dssp             TCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred             ccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence            32 2212222221 2  23778999999985554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=0.00032  Score=79.18  Aligned_cols=136  Identities=16%  Similarity=0.242  Sum_probs=94.6

Q ss_pred             EEEEECCCCC-EEEEEeC--C---------CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEE--EeCCCcEEE
Q 004785          111 IAAAFSPDGK-TLASTHG--D---------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS--GSLDHEVRL  176 (730)
Q Consensus       111 t~lafSPDG~-~LaSgS~--D---------gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaS--gS~DgtVrL  176 (730)
                      ..+.|++-|. +|+.++.  |         .++++.+++..++...+. -.++|.++.|+| ++.-|+.  |-.-..+.|
T Consensus       221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvti  298 (566)
T KOG2315|consen  221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTI  298 (566)
T ss_pred             eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEE
Confidence            4688888665 3333322  3         468888887444444443 468999999999 6655444  445678999


Q ss_pred             EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-C---CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G---HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-d---d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      +|++ +..+..+. .++-+.+-|+|.|++|+.++ +   |.+-|||+.+.+.+.   ..  .-..-+-+.|+|||.++++
T Consensus       299 fnlr-~~~v~df~-egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~---~~--~a~~tt~~eW~PdGe~flT  371 (566)
T KOG2315|consen  299 FNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA---KF--KAANTTVFEWSPDGEYFLT  371 (566)
T ss_pred             EcCC-CCEeEeCC-CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc---cc--ccCCceEEEEcCCCcEEEE
Confidence            9986 56666655 45567889999999998888 2   449999999866543   11  1234467899999999887


Q ss_pred             EEe
Q 004785          253 TAE  255 (730)
Q Consensus       253 tgs  255 (730)
                      +.-
T Consensus       372 ATT  374 (566)
T KOG2315|consen  372 ATT  374 (566)
T ss_pred             Eec
Confidence            653

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.84  E-value=0.0071  Score=66.86  Aligned_cols=95  Identities=13%  Similarity=0.061  Sum_probs=73.7

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-Ee---------CCCcEEEEECCCCeEEEEecCCC------
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GS---------LDHEVRLWNASTAECIGSRDFYR------  192 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaS-gS---------~DgtVrLWDl~tg~~i~~l~h~~------  192 (730)
                      ++|.+.|..+++.+..+..-..+- .+ ++| +++.++. .+         .+..|.+||..+.+.+..+....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            799999999999998887544333 35 999 5555544 55         58899999999999998876433      


Q ss_pred             --CeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCcccc
Q 004785          193 --PIASIAFHASGELLAVAS---GHKLYIWRYNMREETS  226 (730)
Q Consensus       193 --~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~  226 (730)
                        ....++++|||++|++..   +..|.+.|+.+++.+.
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence              234789999999999887   3449999999987644

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.81  E-value=0.00021  Score=76.62  Aligned_cols=114  Identities=16%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-Ce----EEEEEecCC------------CCcEEEEEccC-CCCEEEEE
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GS----CLKVLHGHR------------RTPWVVRFHPL-NPTIIASG  168 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g~----~l~~l~gH~------------~~V~sVafSP~-dg~lLaSg  168 (730)
                      ..-|.++.|..+|.+||+|..+|.|-++.-.. .+    ....++.|.            ..|..+.|.++ +...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            44689999999999999999999999986433 21    233444443            45788999873 23467777


Q ss_pred             eCCCcEEEEECCCCeEE-----------------------------------EEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 004785          169 SLDHEVRLWNASTAECI-----------------------------------GSR--DFYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       169 S~DgtVrLWDl~tg~~i-----------------------------------~~l--~h~~~V~sVafSPdG~~LAsgSd  211 (730)
                      ..|.+|++|-+......                                   +.+  .|..-|+++++..|++.+.++.|
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd  184 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD  184 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence            89999999987642211                                   111  14445677777777776666655


Q ss_pred             CeEEEEEcC
Q 004785          212 HKLYIWRYN  220 (730)
Q Consensus       212 d~I~VWDl~  220 (730)
                      =+|.+|.+.
T Consensus       185 LRINLWnle  193 (433)
T KOG1354|consen  185 LRINLWNLE  193 (433)
T ss_pred             eeeeecccc
Confidence            556666654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.81  E-value=2.8e-05  Score=57.17  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=31.9

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD  135 (730)
                      .+.+|...|++++|+|++.+|++++.|++|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3568999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.00012  Score=82.35  Aligned_cols=136  Identities=14%  Similarity=0.178  Sum_probs=103.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-----------CCcEEEEE
Q 004785          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----------DHEVRLWN  178 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~-----------DgtVrLWD  178 (730)
                      -+-+.|||.|.+|++-...| |.+|--.+...++.|. |.+ |.-+.||| ..++|+|=+.           ...++|||
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence            46799999999999998765 8899877766677774 665 88999999 9999998432           25699999


Q ss_pred             CCCCeEEEEecC---CCCe-EEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          179 ASTAECIGSRDF---YRPI-ASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       179 l~tg~~i~~l~h---~~~V-~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      +.+|...+.+..   ...+ .-..||.|++++|--..++|.||+...-..+..   ..-.-..|....|+|.+..|+-
T Consensus       289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~---Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDK---KSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             ccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecc---cccCCccccCcccCCCcceEEE
Confidence            999998877653   2222 235799999999999999999999876443321   1112357888999999885553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.79  E-value=2.2e-05  Score=91.60  Aligned_cols=236  Identities=15%  Similarity=0.134  Sum_probs=153.1

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCC-cEEEEEC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDH-EVRLWNA  179 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~Dg-tVrLWDl  179 (730)
                      .+..|....+|++|+-+.++|+.|+-.|.|+++++.+|.....+.+|...|+.+.=+- ++..+++.+ ... -..+|++
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence            3667889999999999999999999999999999999999999999999999999888 666555543 333 5779998


Q ss_pred             CC-CeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCC-eEEecCCCCeEEEEEccCCCeEEEEEee
Q 004785          180 ST-AECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (730)
Q Consensus       180 ~t-g~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~-~~l~~h~~~V~sVaFSPdG~~Llatgsv  256 (730)
                      .. +...+.+.   .-.++.|+..-+.-+.|+ .+...|||+.++...... .-.......-+...|+|+.+.++--|-.
T Consensus      1175 ~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred             ccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence            75 33344333   345678887666556666 455999999998765421 1111223334778999999988877889


Q ss_pred             CCccCCCcceeEeccC--CcccCCC--CeEE----EecCCCCCCCCcccccCCCCCCce---eeeEecCCCEEEEEecCC
Q 004785          257 NDLDSSESSLTLATSP--GYWRYPP--PVIC----MAGAHSSSHPGLAEEVPLITPPFL---RPSFVRDDERISLQHTEH  325 (730)
Q Consensus       257 wdl~s~~~~~~l~t~s--G~~~~p~--~~V~----l~d~~s~d~~~L~~~~~~~slpil---~p~FSpDg~rI~~~~~~~  325 (730)
                      ||++.......+-.++  +...|.+  ..|.    +||..+-...        .+.|-+   .+.|..-|..++..-+..
T Consensus      1252 WDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lL--------h~VP~Ldqc~VtFNstG~VmYa~~~~~ 1323 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLL--------HSVPSLDQCAVTFNSTGDVMYAMLNIE 1323 (1516)
T ss_pred             eeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHH--------hcCccccceEEEeccCccchhhhhhhh
Confidence            9999765544332222  1112222  1222    2333222111        233333   578888888888755554


Q ss_pred             CCCcccceeecCCCcceeeecccC
Q 004785          326 DSGATRTQQSLRSSSSVRLLTYST  349 (730)
Q Consensus       326 dsgs~~~~~~~~ss~~~~l~~~~~  349 (730)
                      |.=+.+..-+....-...+..+++
T Consensus      1324 d~~sdvh~~r~k~p~fSSFRTf~a 1347 (1516)
T KOG1832|consen 1324 DVMSDVHTRRVKHPLFSSFRTFDA 1347 (1516)
T ss_pred             hhhhhhcccccccchhhhhccccc
Confidence            444444444444444433444433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.00055  Score=80.12  Aligned_cols=162  Identities=16%  Similarity=0.122  Sum_probs=115.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF  157 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVaf  157 (730)
                      .+..++-|..+|.|++.+....  +...|...      ..+|.++++||.||+|.|-.+-+.+...++.- ..++.+|++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial  120 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIAL  120 (846)
T ss_pred             hcceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEe
Confidence            6788889999999999987543  22233332      55899999999999999999988887776653 357999999


Q ss_pred             ccC----CCCEEEEEeCCCcEEEEECCC---CeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCC--
Q 004785          158 HPL----NPTIIASGSLDHEVRLWNAST---AECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSP--  228 (730)
Q Consensus       158 SP~----dg~lLaSgS~DgtVrLWDl~t---g~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~--  228 (730)
                      +|+    ..+.+++|+.-| +.++.-+-   ...+..-...++|.++.|.  |+++|-++|.+|+|||+.++..+...  
T Consensus       121 ~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  121 HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCC
Confidence            993    257899999888 77765332   1222223467899999996  89999999999999999888654311  


Q ss_pred             -eEEecCCCCeEEEEEccCCCeEE
Q 004785          229 -RIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       229 -~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                       ............+.|.++.+.++
T Consensus       198 p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  198 PSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             CCCCCCcccCCCceEecCCCeEEE
Confidence             11111122345788988877443

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=2.9e-05  Score=86.76  Aligned_cols=150  Identities=16%  Similarity=0.206  Sum_probs=108.0

Q ss_pred             CCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc
Q 004785          101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE  173 (730)
Q Consensus       101 ~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-------g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt  173 (730)
                      +.+.||...|..++--.+.+-+++++.|++|++|.++.       ..+..+++.|+.+|..+.|-. +.+.+++  .|+.
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--CDGG  805 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--ccCc
Confidence            35789999999888777788899999999999999854       236678899999999999987 6666655  5888


Q ss_pred             EEEEECCCCeEEEEec---CCCCeEEEEEcC--CCCEEEEEE--CCeEEEEEcCCCccccCCeEE--ecCCCCeEEEEEc
Q 004785          174 VRLWNASTAECIGSRD---FYRPIASIAFHA--SGELLAVAS--GHKLYIWRYNMREETSSPRIV--LRTRRSLRAVHFH  244 (730)
Q Consensus       174 VrLWDl~tg~~i~~l~---h~~~V~sVafSP--dG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l--~~h~~~V~sVaFS  244 (730)
                      |.+||---++.+....   ..+.+..+.--+  +..+|..++  ..+|+++|.+..+...+....  .+....+++++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999987777655321   222333333323  344555554  344999999988765433332  2345678999999


Q ss_pred             cCCCeEEEE
Q 004785          245 PHAAPLLLT  253 (730)
Q Consensus       245 PdG~~Llat  253 (730)
                      +.|++++++
T Consensus       886 ~~GN~lAa~  894 (1034)
T KOG4190|consen  886 DKGNKLAAA  894 (1034)
T ss_pred             cCcchhhHH
Confidence            999988764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.74  E-value=0.0035  Score=65.67  Aligned_cols=168  Identities=14%  Similarity=0.027  Sum_probs=111.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECC---C-CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSP---D-GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~--L~gH~~~Vt~lafSP---D-G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      .-..|+.|+..|...+|...+..  +.--......+.+..   | ...+..++.|.++++.+++.+.....+....-.+.
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            45678888888888999887542  111111122222211   1 23467788999999999876543322221112378


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEE---ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccC-
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGS---RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSS-  227 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~---l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~-  227 (730)
                      ++++++ ++.++++.+....|.+|.+... +.+..   ....+.-.+..|+.....+|+++. +.+.|||++....... 
T Consensus       163 s~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~  241 (344)
T KOG4532|consen  163 SLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE  241 (344)
T ss_pred             eeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence            899999 9999999999999999998753 22222   234455678899999999999995 5599999987543221 


Q ss_pred             -CeEEecCCCCeEEEEEccCCC
Q 004785          228 -PRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       228 -~~~l~~h~~~V~sVaFSPdG~  248 (730)
                       ......|.+.++.+.|++-|.
T Consensus       242 ~sstrp~hnGa~R~c~Fsl~g~  263 (344)
T KOG4532|consen  242 ISSTRPHHNGAFRVCRFSLYGL  263 (344)
T ss_pred             hcccCCCCCCceEEEEecCCCc
Confidence             112334789999999998765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.73  E-value=0.00013  Score=75.76  Aligned_cols=73  Identities=27%  Similarity=0.434  Sum_probs=63.9

Q ss_pred             CeEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEE-EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785          109 STIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (730)
Q Consensus       109 ~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~~l-~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t  181 (730)
                      .|++++-+|. ..+++.|+.||.+-+||.++.... ..++.|+..++.+-|||.++..|++++.||.+.-||..+
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4999999994 556778888999999999887543 456899999999999999999999999999999999874

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.73  E-value=0.0001  Score=79.02  Aligned_cols=141  Identities=9%  Similarity=0.107  Sum_probs=102.7

Q ss_pred             EEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-----eEEEEEecCCCCcEEEEE
Q 004785           85 ASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-----SCLKVLHGHRRTPWVVRF  157 (730)
Q Consensus        85 ~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg-----~~l~~l~gH~~~V~sVaf  157 (730)
                      ++.+.+..|.+-+.+++  +--.-+..|.++.|.-.+.+++.|...|.|..+|++.+     .+...+. |...|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence            55666777888888776  22235677999999988999999999999999999764     3444443 8888998876


Q ss_pred             ccCCCCEEEEEeCCCcEEEEECCCCeE---EEEec-CCCCe--EEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc
Q 004785          158 HPLNPTIIASGSLDHEVRLWNASTAEC---IGSRD-FYRPI--ASIAFHASGELLAVASGHK-LYIWRYNMREETS  226 (730)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~l~-h~~~V--~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~  226 (730)
                      -..++..|++.+.+|+|++||++.-++   +..+. |-..-  .-+-.++....++++++|- .+||.++.+....
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~  382 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC  382 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence            654678888889999999999997766   44432 32221  2223445555777777666 9999999887544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.72  E-value=0.00046  Score=74.09  Aligned_cols=173  Identities=14%  Similarity=0.187  Sum_probs=127.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC-CC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC----CCeEEEEEecCC
Q 004785           80 ARRGLASWVEAESLHHLRPKY-CP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ----TGSCLKVLHGHR  149 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t-~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~----tg~~l~~l~gH~  149 (730)
                      ....+++.++|.++++|--.. ++     ...-+.+++++.+.++-..|+.|-+.|++.-+.+.    ....++.+..|.
T Consensus        35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~  114 (404)
T KOG1409|consen   35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ  114 (404)
T ss_pred             CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhh
Confidence            566799999999999997543 32     23456789999999999999999999999888653    344556777899


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-----------------------------e------------EEEE-
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----------------------------E------------CIGS-  187 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-----------------------------~------------~i~~-  187 (730)
                      ..|..+-|+- ...++++.+.|..+.---.+.+                             +            .+.. 
T Consensus       115 ~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~  193 (404)
T KOG1409|consen  115 ARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF  193 (404)
T ss_pred             cceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence            9999999987 7778888777765432211111                             1            0111 


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          188 RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       188 l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .+|.+.+.+++|.+..+.|.+|..+ ++.+||+...+...  ....+|...|..+..-+.-+.+++.++
T Consensus       194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~e  260 (404)
T KOG1409|consen  194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGE  260 (404)
T ss_pred             cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccC
Confidence            2477889999999999999999854 59999997766533  467788888888887777776666555

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.72  E-value=0.0021  Score=73.44  Aligned_cols=113  Identities=14%  Similarity=0.164  Sum_probs=81.4

Q ss_pred             CeEEEEECC-CCCEEEEE----eCCCe----EEEEECCCCeEE--EEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          109 STIAAAFSP-DGKTLAST----HGDHT----VKIIDCQTGSCL--KVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       109 ~Vt~lafSP-DG~~LaSg----S~Dgt----VrVWDl~tg~~l--~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      ...++.||. +...+.+-    +.++.    -.+|++..++..  ... -.....|.+.+++| +.+.++.|+.||+|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence            347888887 45555543    22443    355666554321  111 24667899999999 9999999999999999


Q ss_pred             EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004785          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (730)
Q Consensus       177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~  223 (730)
                      ||...+..... ...-..+.++|||+|.++++|++ |.+.+||+....
T Consensus       286 yD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  286 YDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99987644333 44456788999999999999997 459999987654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.72  E-value=0.0011  Score=75.22  Aligned_cols=163  Identities=15%  Similarity=0.152  Sum_probs=103.6

Q ss_pred             eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE-eC--C-CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCE
Q 004785          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG-SL--D-HEVRLWNASTAECIGSRDFYRPIASIAFHASGEL  205 (730)
Q Consensus       130 tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg-S~--D-gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~  205 (730)
                      .+.+-|.. |.....+..-...+..-+|+| ++..++.. -.  . ..+.++|+.+++........+.-....|+|||+.
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCE
Confidence            34444543 555555555556677789999 55443332 22  2 4599999999988888777777778899999999


Q ss_pred             EEEEE--CCe--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCe
Q 004785          206 LAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPV  281 (730)
Q Consensus       206 LAsgS--dd~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~  281 (730)
                      |+...  ++.  |+++|+..+....    +......-..=.|+|||++++.++..               .|+     +.
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~ivf~Sdr---------------~G~-----p~  307 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSKIVFTSDR---------------GGR-----PQ  307 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCEEEEEeCC---------------CCC-----cc
Confidence            88887  333  9999998876322    33333333367899999999988531               122     24


Q ss_pred             EEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       282 V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      |++.+........+......    ...|.+||||++|++-.
T Consensus       308 I~~~~~~g~~~~riT~~~~~----~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         308 IYLYDLEGSQVTRLTFSGGG----NSNPVWSPDGDKIVFES  344 (425)
T ss_pred             eEEECCCCCceeEeeccCCC----CcCccCCCCCCEEEEEe
Confidence            55544333333222221111    11788999999999944

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.66  E-value=0.0038  Score=77.15  Aligned_cols=140  Identities=15%  Similarity=0.236  Sum_probs=95.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeC----C--CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC---CCcEEEE
Q 004785          107 PRSTIAAAFSPDGKTLASTHG----D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL---DHEVRLW  177 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~----D--gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~---DgtVrLW  177 (730)
                      ...-..++|-.||.++|+.+-    +  +.+|||+-+ |....+-..-.+--.+++|.| .|+++++...   ...|.+|
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEE
Confidence            335568999999999998875    2  579999954 764444333333345689999 9999998765   3456677


Q ss_pred             ECCCCeEEEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004785          178 NASTAECIGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (730)
Q Consensus       178 Dl~tg~~i~~l~-----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~  249 (730)
                      .- +|-.-..|.     ....|..+.|++|+..||+--.+.|.+|-..+..--.+..........+..+.|+|....
T Consensus       287 Er-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~  362 (928)
T PF04762_consen  287 ER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL  362 (928)
T ss_pred             ec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence            64 343333322     345799999999999999988888999988776532211122233344556999996543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.64  E-value=0.0089  Score=64.54  Aligned_cols=202  Identities=17%  Similarity=0.166  Sum_probs=127.1

Q ss_pred             CCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEE-----eCCCeEEEEeCCCC----
Q 004785           31 RNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASW-----VEAESLHHLRPKYC----  101 (730)
Q Consensus        31 rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sg-----s~DgsIrlWd~~t~----  101 (730)
                      |...|-.+|.....+.........-+.++++-.  ++           .++..|++-     ...|.|.+||...+    
T Consensus        25 RPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs-----------~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri   91 (305)
T PF07433_consen   25 RPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FS-----------PDGRLLYTTENDYETGRGVIGVYDAARGYRRI   91 (305)
T ss_pred             CCCcEEEEEEcCCCceeeEEcCCCCCEEecCEE--Ec-----------CCCCEEEEeccccCCCcEEEEEEECcCCcEEE
Confidence            567777777775554433333333344443322  22           133333332     24678999998832    


Q ss_pred             -CCCCCCCCeEEEEECCCCCEEEEEeC------------------CCeEEEEECCCCeEEEE--E--ecCCCCcEEEEEc
Q 004785          102 -PLSPPPRSTIAAAFSPDGKTLASTHG------------------DHTVKIIDCQTGSCLKV--L--HGHRRTPWVVRFH  158 (730)
Q Consensus       102 -~L~gH~~~Vt~lafSPDG~~LaSgS~------------------DgtVrVWDl~tg~~l~~--l--~gH~~~V~sVafS  158 (730)
                       .+..|--.-..+.+.|||+.|+++-.                  +-++.+.|..+|+.+.+  +  .-|.-+|..+++.
T Consensus        92 ~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~  171 (305)
T PF07433_consen   92 GEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVD  171 (305)
T ss_pred             eEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEec
Confidence             45566666778999999988887732                  23355567788888766  4  3477789999999


Q ss_pred             cCCCCEEEEEeCCCc-------EEEEECCCCeEEEEe--------cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785          159 PLNPTIIASGSLDHE-------VRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (730)
Q Consensus       159 P~dg~lLaSgS~Dgt-------VrLWDl~tg~~i~~l--------~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t  221 (730)
                      + ++..++..-..+.       |-+++-  ++.+..+        ...+.+-+|+++++|.++++.+  .+.+.+||..+
T Consensus       172 ~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  172 G-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             C-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            8 7766665443332       333333  3323222        2457899999999999999888  45699999999


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +..+.     ...-..+..|+-.+++ ++++++
T Consensus       249 g~~~~-----~~~l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  249 GRLLG-----SVPLPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             CCEee-----ccccCceeeeeecCCc-eEEeCC
Confidence            87543     2223456777777777 454443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.63  E-value=0.00052  Score=72.79  Aligned_cols=148  Identities=16%  Similarity=0.223  Sum_probs=105.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCC-----CCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR-----RTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~-----~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      .|..-|.++.|+.|...++++ +|-.|.+|+++-..   .+..++.|.     .-|++..|+|...+.+...+..|+|++
T Consensus       170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            466678899999998888876 67889999986532   234445553     457889999978888999999999999


Q ss_pred             EECCCCeEE----EEe-------c------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecC-----
Q 004785          177 WNASTAECI----GSR-------D------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT-----  234 (730)
Q Consensus       177 WDl~tg~~i----~~l-------~------h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h-----  234 (730)
                      -|++.....    +.+       .      -...|..+.|+++|+++++-+--+|+|||++..+...  ..+.-|     
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pi--kTi~~h~~l~~  326 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPI--KTIPMHCDLMD  326 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCc--eeechHHHHHH
Confidence            999843211    111       1      1246788999999999998888889999999876421  222112     


Q ss_pred             -------CCCe---EEEEEccCCCeEEEEEe
Q 004785          235 -------RRSL---RAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       235 -------~~~V---~sVaFSPdG~~Llatgs  255 (730)
                             ...|   ..+.||.|.+.+++++-
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy  357 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSY  357 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCccccccccc
Confidence                   1222   46789988887766543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.62  E-value=0.018  Score=59.75  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=105.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC------C--CC-CCCCeEEEEECCCCCEEEEEeCC--------CeEEEEECCCCeEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCP------L--SP-PPRSTIAAAFSPDGKTLASTHGD--------HTVKIIDCQTGSCLK  143 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~------L--~g-H~~~Vt~lafSPDG~~LaSgS~D--------gtVrVWDl~tg~~l~  143 (730)
                      +..++.+..++ +.++|..+++      .  .. .....+++++.++|++.++....        +.|..++.. ++...
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            35555555544 4555877652      1  12 34568899999999977776553        568888877 65444


Q ss_pred             EEecCCCCcEEEEEccCCCC-EEEEEeCCCcEEEEECCCCe--E--EEEe---cCC-CCeEEEEEcCCCCEEEEEE-CCe
Q 004785          144 VLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAE--C--IGSR---DFY-RPIASIAFHASGELLAVAS-GHK  213 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~tg~--~--i~~l---~h~-~~V~sVafSPdG~~LAsgS-dd~  213 (730)
                      ... .-...+.|+|+| +++ ++++-+..+.|..+|+....  .  ...+   ... +..-.++++.+|++.++.. .++
T Consensus       129 ~~~-~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  129 VAD-GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR  206 (246)
T ss_dssp             EEE-EESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred             Eec-CcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence            443 345678999999 665 55567788889999986322  1  1112   222 2478899999998666554 566


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEE
Q 004785          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTA  254 (730)
Q Consensus       214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS-PdG~~Llatg  254 (730)
                      |.++|.+ ++...   .+.-....+++++|. ++.+.|+.|.
T Consensus       207 I~~~~p~-G~~~~---~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  207 IVVFDPD-GKLLR---EIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEETT-SCEEE---EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEECCC-ccEEE---EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            9999987 55433   222233589999994 6767676654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.60  E-value=0.0022  Score=71.90  Aligned_cols=152  Identities=11%  Similarity=0.131  Sum_probs=106.7

Q ss_pred             CeEEEEeCCCC--CCC-CCCCCeEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785           91 ESLHHLRPKYC--PLS-PPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (730)
Q Consensus        91 gsIrlWd~~t~--~L~-gH~~~Vt~lafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL  165 (730)
                      ..+.++++...  +.. .-.+.|...+|+|+++.+++.+  .+-.+.++|++.. ....  ...+.=+.+-|+| ..+++
T Consensus       255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp-~~r~i  330 (561)
T COG5354         255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSP-HERYI  330 (561)
T ss_pred             ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccC-cccEE
Confidence            44667766533  222 5588999999999988877766  4778999998765 3332  3344456689999 88888


Q ss_pred             EEEeCC---CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-------CCeEEEEEcCCCccccCCeEEecCC
Q 004785          166 ASGSLD---HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-------GHKLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       166 aSgS~D---gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-------dd~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                      +.++.|   |.|-+||....-.+...-......-+.|+|||+++.+..       |..|.|||+.....-          
T Consensus       331 l~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f----------  400 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF----------  400 (561)
T ss_pred             EEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh----------
Confidence            887765   679999987654444222223345567999999888775       344999999766531          


Q ss_pred             CCeEEEEEccCCCeEEEEEeeC
Q 004785          236 RSLRAVHFHPHAAPLLLTAEVN  257 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Llatgsvw  257 (730)
                       ..+.+.|.|.|++..+++..|
T Consensus       401 -el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         401 -ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -hhhhccccCCcccceeeccCC
Confidence             456778999999777766666

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.58  E-value=0.016  Score=62.67  Aligned_cols=192  Identities=16%  Similarity=0.144  Sum_probs=119.2

Q ss_pred             CeEEEEECC-CCCEEEEEeCCC-eEEEEECCCCeEEEEEecCCCCcE--EEEEccCCCCEEEEEeC-----CCcEEEEEC
Q 004785          109 STIAAAFSP-DGKTLASTHGDH-TVKIIDCQTGSCLKVLHGHRRTPW--VVRFHPLNPTIIASGSL-----DHEVRLWNA  179 (730)
Q Consensus       109 ~Vt~lafSP-DG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~gH~~~V~--sVafSP~dg~lLaSgS~-----DgtVrLWDl  179 (730)
                      ....++.+| ++..++.+-.-| ...+||..+++.+..+....+.-.  ...|++ ++++|++.-.     .|.|-|||.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence            455788899 566677776655 578899999998877754433322  378999 8888888644     477999999


Q ss_pred             C-CCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC--------e-----------EEEEEcCCCccccCCeEE--ecCCC
Q 004785          180 S-TAECIGSRD-FYRPIASIAFHASGELLAVASGH--------K-----------LYIWRYNMREETSSPRIV--LRTRR  236 (730)
Q Consensus       180 ~-tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd--------~-----------I~VWDl~t~~~~~~~~~l--~~h~~  236 (730)
                      . +-+.+..+. +.-.-..+.+.|||+.|+++.++        +           +.+.|..+++.+. ...+  ..|..
T Consensus        85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp~~~~~l  163 (305)
T PF07433_consen   85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELPPDLHQL  163 (305)
T ss_pred             cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecCcccccc
Confidence            9 445566655 44456678899999988887521        1           4445566666544 1223  33677


Q ss_pred             CeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccC----CCCCCceeeeEe
Q 004785          237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVP----LITPPFLRPSFV  312 (730)
Q Consensus       237 ~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~----~~slpil~p~FS  312 (730)
                      +|+.+++.++|.  +..+.-|.-...+..              +.+.+......  ..+...+.    ...--+-+++|+
T Consensus       164 SiRHLa~~~~G~--V~~a~Q~qg~~~~~~--------------PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~  225 (305)
T PF07433_consen  164 SIRHLAVDGDGT--VAFAMQYQGDPGDAP--------------PLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAAD  225 (305)
T ss_pred             ceeeEEecCCCc--EEEEEecCCCCCccC--------------CeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEe
Confidence            899999999997  333334433322222              23333321111  11111111    111223379999


Q ss_pred             cCCCEEEE
Q 004785          313 RDDERISL  320 (730)
Q Consensus       313 pDg~rI~~  320 (730)
                      +|++.|++
T Consensus       226 ~~g~~ia~  233 (305)
T PF07433_consen  226 RDGRLIAV  233 (305)
T ss_pred             CCCCEEEE
Confidence            99999987

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.53  E-value=0.00089  Score=71.08  Aligned_cols=184  Identities=14%  Similarity=0.197  Sum_probs=119.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC---C------CCCCCC------------CCeEEEEECCCCC--EEEEEeCCCeEEEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKY---C------PLSPPP------------RSTIAAAFSPDGK--TLASTHGDHTVKIID  135 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t---~------~L~gH~------------~~Vt~lafSPDG~--~LaSgS~DgtVrVWD  135 (730)
                      ..|..|++|.+.|.|.++.-..   |      .+.+|.            ..|..+.|-.++.  .++..++|.+|++|.
T Consensus        36 ~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWK  115 (460)
T COG5170          36 ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWK  115 (460)
T ss_pred             cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeee
Confidence            4567888888889888887542   1      244553            3578899887543  466667999999998


Q ss_pred             CCCCe-------------------------------------EE-----EEE-ecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004785          136 CQTGS-------------------------------------CL-----KVL-HGHRRTPWVVRFHPLNPTIIASGSLDH  172 (730)
Q Consensus       136 l~tg~-------------------------------------~l-----~~l-~gH~~~V~sVafSP~dg~lLaSgS~Dg  172 (730)
                      +....                                     .+     +.+ ..|.--|.++.|+. +...++++ .|-
T Consensus       116 iyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdL  193 (460)
T COG5170         116 IYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDL  193 (460)
T ss_pred             eecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-chheeeec-cce
Confidence            83220                                     00     111 24666678899987 66666664 566


Q ss_pred             cEEEEECCCCeE----EEEecCC-----CCeEEEEEcCCCC--EEEEEECCeEEEEEcCCCccccCCe------------
Q 004785          173 EVRLWNASTAEC----IGSRDFY-----RPIASIAFHASGE--LLAVASGHKLYIWRYNMREETSSPR------------  229 (730)
Q Consensus       173 tVrLWDl~tg~~----i~~l~h~-----~~V~sVafSPdG~--~LAsgSdd~I~VWDl~t~~~~~~~~------------  229 (730)
                      .|.+|++..-..    +-..+|.     .-|++..|+|...  +.++.+.+.|++-|++.........            
T Consensus       194 rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~  273 (460)
T COG5170         194 RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV  273 (460)
T ss_pred             eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc
Confidence            799999875322    2222233     3578999999543  5556667779999998543211000            


Q ss_pred             -EEecCCCCeEEEEEccCCCeEEE----EEeeCCccCCCc
Q 004785          230 -IVLRTRRSLRAVHFHPHAAPLLL----TAEVNDLDSSES  264 (730)
Q Consensus       230 -~l~~h~~~V~sVaFSPdG~~Lla----tgsvwdl~s~~~  264 (730)
                       .+.+-...|..+.|+++|+++++    +..+||+...+.
T Consensus       274 ~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~  313 (460)
T COG5170         274 DFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKN  313 (460)
T ss_pred             hhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccC
Confidence             11122457889999999998886    556898875443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.48  E-value=0.0018  Score=76.82  Aligned_cols=171  Identities=13%  Similarity=0.108  Sum_probs=120.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      +...++-|+-.+.+..+|+.+.+..    -....|+-|..  +++.|.+|...|+|.+-|..+.+.++.+..|.+.|..+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            4455666666666777787665321    11223555544  58899999999999999999999999999999999887


Q ss_pred             EEccCCCCEEEEEeC---------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEEEE-CCeEEEEEcCCCcc
Q 004785          156 RFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVAS-GHKLYIWRYNMREE  224 (730)
Q Consensus       156 afSP~dg~lLaSgS~---------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAsgS-dd~I~VWDl~t~~~  224 (730)
                      ..   .+++|++++.         |.-|++||++..+.+.-+.....-.-+.|+|.-. .+++.+ .+...+-|..+...
T Consensus       224 Dv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  224 DV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             ec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence            77   5788998874         5678999999988777666555556788888543 455554 66688888433222


Q ss_pred             c-cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          225 T-SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       225 ~-~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      . ............+..+++|++|..++.+-.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~  332 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDH  332 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecc
Confidence            1 112233444566999999999997777654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.48  E-value=0.00095  Score=77.01  Aligned_cols=100  Identities=12%  Similarity=0.042  Sum_probs=76.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-------------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC-------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~-------------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg  139 (730)
                      .....|+.|+.||.+++..+.+.                   +|.||++.|.-+.|+.+.+.|-+...+|.|.||-+-.|
T Consensus        24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg  103 (1189)
T KOG2041|consen   24 KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG  103 (1189)
T ss_pred             ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc
Confidence            45678999999999999987642                   47799999999999999999999888999999998766


Q ss_pred             eEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          140 SCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       140 ~~l~~l~--gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      .-...+.  ..+..|.+++|+. ++..+...-.||.|.+=.+
T Consensus       104 sW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen  104 SWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             cHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEee
Confidence            4222111  1334578899998 7777776667776655443

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.47  E-value=0.00034  Score=87.28  Aligned_cols=142  Identities=11%  Similarity=0.144  Sum_probs=112.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      .....-++|+.||.|++|.-..+      +..|. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|....
T Consensus      2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~ 2295 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKAL 2295 (2439)
T ss_pred             CCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccc
Confidence            34456678888888888875443      12344 789999999999999999999999999976 66777888999888


Q ss_pred             EEEEEccCCCCEEEEEe---CCCcEEEEECCCC---eEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccc
Q 004785          153 WVVRFHPLNPTIIASGS---LDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREET  225 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS---~DgtVrLWDl~tg---~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~  225 (730)
                      ...+|-.   ..+++++   .++.+.+||....   .++. ..|.+.++++++-|..++|++|+.++ |++||++..+..
T Consensus      2296 ~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2296 SDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred             cceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence            8888853   6677754   5788999997542   2333 66999999999999999999999554 999999988753


Q ss_pred             c
Q 004785          226 S  226 (730)
Q Consensus       226 ~  226 (730)
                      .
T Consensus      2372 h 2372 (2439)
T KOG1064|consen 2372 H 2372 (2439)
T ss_pred             H
Confidence            3

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00084  Score=73.40  Aligned_cols=152  Identities=20%  Similarity=0.176  Sum_probs=108.0

Q ss_pred             CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          102 PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      .+.+|...|.+++|||... +|..++.+.+|+|.|+++...+..+..| ..+++++|.-++.++++.|...|.|.|+|++
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            3567888899999999665 8889999999999999999999999888 6799999999788889999999999999998


Q ss_pred             CCeEE-EEec---CCCCeEEEEE------cCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          181 TAECI-GSRD---FYRPIASIAF------HASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       181 tg~~i-~~l~---h~~~V~sVaf------SPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      ..+-. ..+.   ...+|..++.      .+.|.+|+ +.--.+..|.+........+....+..+...++..++-.+++
T Consensus       267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv-~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~  345 (463)
T KOG1645|consen  267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLV-FALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHL  345 (463)
T ss_pred             CCCchHhhhhhhhccCcceeecccCccccccccceEE-eeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceE
Confidence            65432 1111   1233443332      22333333 333346778776554433232334445667778888877888


Q ss_pred             EEEEe
Q 004785          251 LLTAE  255 (730)
Q Consensus       251 latgs  255 (730)
                      +++..
T Consensus       346 l~tyR  350 (463)
T KOG1645|consen  346 LLTYR  350 (463)
T ss_pred             EEEec
Confidence            88765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.42  E-value=0.00095  Score=79.01  Aligned_cols=141  Identities=18%  Similarity=0.172  Sum_probs=111.6

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEECCCCeE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSC  141 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~---------DgtVrVWDl~tg~~  141 (730)
                      ...+.+++.+++|...|+|-+-|..+.    ++..|++.|.++..  .|++|++++.         |.-|+|||++..+.
T Consensus       181 ~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra  258 (1118)
T KOG1275|consen  181 TIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA  258 (1118)
T ss_pred             EEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence            334567889999999999999999876    57899999987766  5899999976         67799999998887


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE---CCCCe-EEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEE
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN---ASTAE-CIGSRD-FYRPIASIAFHASGELLAVAS-GHKLY  215 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD---l~tg~-~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~  215 (730)
                      +.-+.-+.++ .-+.|+|.=...++.++..|...+-|   +.... .+..+. ....+....++++|+.|+.|. ++.|.
T Consensus       259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~  337 (1118)
T KOG1275|consen  259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN  337 (1118)
T ss_pred             cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence            7777666664 55889996677888999999999999   33321 122232 445599999999999999998 45599


Q ss_pred             EEE
Q 004785          216 IWR  218 (730)
Q Consensus       216 VWD  218 (730)
                      +|.
T Consensus       338 ~wa  340 (1118)
T KOG1275|consen  338 LWA  340 (1118)
T ss_pred             eec
Confidence            997

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.40  E-value=0.0004  Score=79.96  Aligned_cols=142  Identities=12%  Similarity=0.150  Sum_probs=100.8

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------------EEEEEecCCCCcEEEEEccCCCCEEEEEeC
Q 004785          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSL  170 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~  170 (730)
                      ......|+.|+.+..+||.|+.||.++|..+.+..               .-+.+.||.+.|..+.|+. +.+.+-+...
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence            34568899999999999999999999999875421               2246789999999999998 7788888899


Q ss_pred             CCcEEEEECCCCeEEEEe---cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004785          171 DHEVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH  246 (730)
Q Consensus       171 DgtVrLWDl~tg~~i~~l---~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPd  246 (730)
                      +|-|.+|-+-+|......   ..++-|.+++|..||..+...-.++ |.|=.++.......  .+.  ......+.|++|
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk--g~~l~hv~ws~D  167 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK--GQLLAHVLWSED  167 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc--hheccceeeccc
Confidence            999999999888654332   2456789999999999877766333 43333322211000  011  112346789998


Q ss_pred             CCeEEE
Q 004785          247 AAPLLL  252 (730)
Q Consensus       247 G~~Lla  252 (730)
                      .+.+++
T Consensus       168 ~~~~Lf  173 (1189)
T KOG2041|consen  168 LEQALF  173 (1189)
T ss_pred             HHHHHh
Confidence            876554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.39  E-value=0.024  Score=63.95  Aligned_cols=252  Identities=15%  Similarity=0.115  Sum_probs=146.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-CC-CCCCCCeEEEEECCCCCEEEEEeC---------------CCeEEEEECCCCeEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-PL-SPPPRSTIAAAFSPDGKTLASTHG---------------DHTVKIIDCQTGSCL  142 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-~L-~gH~~~Vt~lafSPDG~~LaSgS~---------------DgtVrVWDl~tg~~l  142 (730)
                      .|..|++. ...-|.+|.-... ++ .-....|..+.|||++++|.+=+.               +..+.+||+.+|..+
T Consensus        43 ~G~~l~~~-~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv  121 (561)
T COG5354          43 LGTYLFSE-HAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV  121 (561)
T ss_pred             cchheehh-hccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE
Confidence            44444433 3344667765433 11 112345899999999999998654               235999999999999


Q ss_pred             EEEecCCCC--cE-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ec--CCCCeEEEEEcCCCC--EEEEEE----
Q 004785          143 KVLHGHRRT--PW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD--FYRPIASIAFHASGE--LLAVAS----  210 (730)
Q Consensus       143 ~~l~gH~~~--V~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~--h~~~V~sVafSPdG~--~LAsgS----  210 (730)
                      ..+.+...+  .+ -+.|+- +..+++-. ....++|+++ ++..... +.  ....|....|+|.|+  .|++-.    
T Consensus       122 ~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~  198 (561)
T COG5354         122 FSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKL  198 (561)
T ss_pred             eeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccC
Confidence            988876665  56 688988 66666654 3346999998 4332211 11  135688889999754  455443    


Q ss_pred             --CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCC
Q 004785          211 --GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (730)
Q Consensus       211 --dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~  288 (730)
                        ...++||.+.....+.... +.  ...=..+.|.+.|+++++-....- .+           +...|-...+.+-.+.
T Consensus       199 ~kpa~~~i~sIp~~s~l~tk~-lf--k~~~~qLkW~~~g~~ll~l~~t~~-ks-----------nKsyfgesnLyl~~~~  263 (561)
T COG5354         199 NKPAMVRILSIPKNSVLVTKN-LF--KVSGVQLKWQVLGKYLLVLVMTHT-KS-----------NKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCcEEEEEEccCCCeeeeee-eE--eecccEEEEecCCceEEEEEEEee-ec-----------ccceeccceEEEEeec
Confidence              2339999998665433111 11  122247889999998876543111 11           1111111234443333


Q ss_pred             CCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeeecccCCCCCccceecc
Q 004785          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSP  360 (730)
Q Consensus       289 s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~~~~~q~~~~v~p  360 (730)
                      ..+   +..+. +...|+...+|.|++++.++..+-.++....+.  +.+.    +.++-+++-..-...+|
T Consensus       264 e~~---i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~--lr~N----l~~~~Pe~~rNT~~fsp  325 (561)
T COG5354         264 ERS---IPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD--LRGN----LRFYFPEQKRNTIFFSP  325 (561)
T ss_pred             ccc---cceec-cccccceeeeecccCCceeEEecccccceeecc--cccc----eEEecCCcccccccccC
Confidence            211   11111 234477889999999999887766655444443  3322    44555544444444333

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.38  E-value=0.00036  Score=72.54  Aligned_cols=142  Identities=15%  Similarity=0.123  Sum_probs=93.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCCCCC-e----EEEEECCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLSPPPRS-T----IAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~-V----t~lafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+..++.+..|+.+-+.+.+.-.-..|.-. +    .+.+.-..+..|.++.-     -+..++|+++..+.+..-+...
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~  179 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL  179 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence            567788899999998888764210111111 1    12222223444444321     2345667765544332222233


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEcC-CCCEEEEEECC-eEEEEEcCC
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHA-SGELLAVASGH-KLYIWRYNM  221 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafSP-dG~~LAsgSdd-~I~VWDl~t  221 (730)
                      ..|.+++-+|...+++++|+.||.+-+||.+.......  ..|+.+|+.+-|+| ++..|++++.+ .+..||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            44999999997778889999999999999998754433  34899999999999 45688888855 499999875

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.0021  Score=75.47  Aligned_cols=135  Identities=20%  Similarity=0.221  Sum_probs=102.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~  186 (730)
                      ...++|++++  +++|+.|+.+|.|++++.. +.. .....|...      .- +|.+++||+.||+|.|-.+-+.+...
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence            3457788876  7899999999999999975 433 444456543      33 89999999999999999999999999


Q ss_pred             EecCCCCeEEEEEcCC-----CCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          187 SRDFYRPIASIAFHAS-----GELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       187 ~l~h~~~V~sVafSPd-----G~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .+....++.+|+++||     .+.+++|+..++.++.-+.-+... ...+....+.|.++.|.  |.+++.+..
T Consensus       108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~-~v~l~~~eG~I~~i~W~--g~lIAWand  178 (846)
T KOG2066|consen  108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD-SVVLSEGEGPIHSIKWR--GNLIAWAND  178 (846)
T ss_pred             eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc-ceeeecCccceEEEEec--CcEEEEecC
Confidence            9999999999999998     457788876657777544332211 22455668899999995  666665543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.36  E-value=0.00046  Score=74.17  Aligned_cols=120  Identities=14%  Similarity=0.157  Sum_probs=94.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE---EEEEec
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC---LKVLHG  147 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~---l~~l~g  147 (730)
                      .+..++.|...|.|-.+|++..        ...-|...|+++..-. ++++|.+.+-+|+|++||++--++   +..+.|
T Consensus       263 s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG  342 (425)
T KOG2695|consen  263 SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG  342 (425)
T ss_pred             cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence            4678889999999999999764        2335888999988777 788898888999999999977666   889999


Q ss_pred             CCCCcEEE--EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC-----CeEEEEEc
Q 004785          148 HRRTPWVV--RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-----PIASIAFH  200 (730)
Q Consensus       148 H~~~V~sV--afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~-----~V~sVafS  200 (730)
                      |-..-.-+  -+++ ....+++++.|...+||.++.|..+.++....     .+.+++|+
T Consensus       343 HvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  343 HVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             cccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            96544333  3455 66788889999999999999999988876543     34455554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.36  E-value=0.05  Score=57.70  Aligned_cols=173  Identities=17%  Similarity=0.146  Sum_probs=105.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC--------C-CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-
Q 004785           79 DARRGLASWVEAESLHHLRPKYC--------P-LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-  148 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~--------~-L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-  148 (730)
                      ++|+.|+ ...|..|.+=..+..        + -+.....-.-++||||+.+||.+...|+|+++|+.. ..+..+..- 
T Consensus         7 ~~Gk~lA-i~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~   84 (282)
T PF15492_consen    7 SDGKLLA-ILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM   84 (282)
T ss_pred             CCCcEEE-EEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence            3444333 345666665554432        1 122333467899999999999999999999999864 444444321 


Q ss_pred             ------CCCcEEEEEccCC-----CCEEEEEeCCCcEEEEECCCC-----eEEEEec----CCCCeEEEEEcCCCCEEEE
Q 004785          149 ------RRTPWVVRFHPLN-----PTIIASGSLDHEVRLWNASTA-----ECIGSRD----FYRPIASIAFHASGELLAV  208 (730)
Q Consensus       149 ------~~~V~sVafSP~d-----g~lLaSgS~DgtVrLWDl~tg-----~~i~~l~----h~~~V~sVafSPdG~~LAs  208 (730)
                            ...|-.+.|-+..     ...|+.-..+|.++-+-+..+     +....+.    +...|.++.|+|..++|++
T Consensus        85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV  164 (282)
T PF15492_consen   85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV  164 (282)
T ss_pred             ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence                  2345556665422     225666677777776665322     2223332    4678999999999998888


Q ss_pred             EE----CC--------eEEEEEcCCCcc-----------cc------CCe------EE---ecCCCCeEEEEEccCCCeE
Q 004785          209 AS----GH--------KLYIWRYNMREE-----------TS------SPR------IV---LRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       209 gS----dd--------~I~VWDl~t~~~-----------~~------~~~------~l---~~h~~~V~sVaFSPdG~~L  250 (730)
                      |+    ++        ++..|.+-.+..           ..      ...      ..   ......|..+..||||+.|
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L  244 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL  244 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence            86    11        377777643321           00      000      00   1125678999999999976


Q ss_pred             EEE
Q 004785          251 LLT  253 (730)
Q Consensus       251 lat  253 (730)
                      ++.
T Consensus       245 a~i  247 (282)
T PF15492_consen  245 ACI  247 (282)
T ss_pred             EEE
Confidence            653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0012  Score=72.29  Aligned_cols=94  Identities=16%  Similarity=0.241  Sum_probs=77.4

Q ss_pred             EEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785          131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       131 VrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS  210 (730)
                      |++.+..+.+....+.+|...|..++|+|.+..++..++.+.+|+|.|+++...+..+.....+++++|+-|....+.++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            56666666666666778888999999999666689999999999999999999888888779999999999887655555


Q ss_pred             --CCeEEEEEcCCCcc
Q 004785          211 --GHKLYIWRYNMREE  224 (730)
Q Consensus       211 --dd~I~VWDl~t~~~  224 (730)
                        .+.|.|||++..+.
T Consensus       255 l~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEG  270 (463)
T ss_pred             ccCceEEEEEccCCCc
Confidence              34499999988764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.33  E-value=0.00049  Score=79.61  Aligned_cols=163  Identities=17%  Similarity=0.266  Sum_probs=110.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCc
Q 004785           82 RGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTP  152 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~~~V  152 (730)
                      ..+++++..+.| +|++...       .+.+|...|+.+.|.| ....|++++-|..|..||+++.. ++..+..-...-
T Consensus        83 ~wiVsts~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a  161 (1081)
T KOG0309|consen   83 YWIVSTSNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA  161 (1081)
T ss_pred             eeEEecCcchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC
Confidence            455566555544 5665432       3679999999999999 45689999999999999998854 444444433446


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEE-ecCCCCeEEEEEcCC--CCEEEEEECCeEEEEEcCCCccccCC
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASIAFHAS--GELLAVASGHKLYIWRYNMREETSSP  228 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~-l~h~~~V~sVafSPd--G~~LAsgSdd~I~VWDl~t~~~~~~~  228 (730)
                      ..|+|+-.+++.+++ +..+.|++||++.|.. +.. ..|-..|+++.|..-  +..+-...|+.|++||+.+.....  
T Consensus       162 sqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~--  238 (1081)
T KOG0309|consen  162 SQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES--  238 (1081)
T ss_pred             ceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc--
Confidence            679999867777766 5566799999998753 333 346677888888652  334444446779999998765422  


Q ss_pred             eEEecCCCCeEEEEEccCCC
Q 004785          229 RIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       229 ~~l~~h~~~V~sVaFSPdG~  248 (730)
                      ........+|..-.|-|-|.
T Consensus       239 ~~~vtt~~piw~~r~~Pfg~  258 (1081)
T KOG0309|consen  239 KRTVTTNFPIWRGRYLPFGE  258 (1081)
T ss_pred             ceeccccCcceeccccccCc
Confidence            23344455666666666554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=97.33  E-value=0.0042  Score=66.97  Aligned_cols=152  Identities=13%  Similarity=0.179  Sum_probs=112.0

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----  138 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-----  138 (730)
                      ............|+.|...+++.-+.....        ....|...|..+-|+-.-.++++.+.|..+.---.+.     
T Consensus        71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg  150 (404)
T KOG1409|consen   71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG  150 (404)
T ss_pred             ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence            333444456678888888998887765421        3457889999999988888888887765443211111     


Q ss_pred             ------------------------------------CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          139 ------------------------------------GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       139 ------------------------------------g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                                                          -..+..+++|.+.+.+++|.+ ...++++|..|..|.+||+.-+
T Consensus       151 ~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  151 GYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             ceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCC
Confidence                                                123456679999999999999 9999999999999999999754


Q ss_pred             eE--EEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004785          183 EC--IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE  224 (730)
Q Consensus       183 ~~--i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~  224 (730)
                      +-  .....|.+.|..+..-+--+.|.+++ |+.|-+||++....
T Consensus       230 ~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  230 KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV  274 (404)
T ss_pred             cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence            43  34456888888888777777777777 55699999976543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.31  E-value=0.00088  Score=76.48  Aligned_cols=76  Identities=25%  Similarity=0.406  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE  183 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~  183 (730)
                      .....|.|++++|+..+|+.|+.||+|.+||...+...  +....-.++.++||| ++.++++|+.-|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence            46678999999999999999999999999998776332  333445678899999 99999999999999999987543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.27  E-value=0.11  Score=55.31  Aligned_cols=141  Identities=21%  Similarity=0.256  Sum_probs=87.5

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEEe---cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004785          113 AAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVLH---GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (730)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l~---gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~  187 (730)
                      ++.+.||++||.- .|..|-|-..++.  ..+.+.+   .....-..++|+| |+.+|+.+...|+|+++|+...+....
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeEEc
Confidence            5667899988876 5667777665442  2223322   2233456799999 999999999999999999975443222


Q ss_pred             e-------cCCCCeEEEEEcCCC-------CEEEEEECCeEEEEEcCCC--c---cccCCeEEecCCCCeEEEEEccCCC
Q 004785          188 R-------DFYRPIASIAFHASG-------ELLAVASGHKLYIWRYNMR--E---ETSSPRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       188 l-------~h~~~V~sVafSPdG-------~~LAsgSdd~I~VWDl~t~--~---~~~~~~~l~~h~~~V~sVaFSPdG~  248 (730)
                      -       .....|..+.|-+-.       ++|+..-.+.++=|-+..+  +   +.............|.++.++|.-+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            1       123467777775432       3455555665555544221  1   1111111122367899999999998


Q ss_pred             eEEEEEe
Q 004785          249 PLLLTAE  255 (730)
Q Consensus       249 ~Llatgs  255 (730)
                      .|++++.
T Consensus       161 LLlVgG~  167 (282)
T PF15492_consen  161 LLLVGGC  167 (282)
T ss_pred             EEEEecc
Confidence            7777665

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.24  E-value=0.0094  Score=73.76  Aligned_cols=171  Identities=13%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             cCCCEEEEEeCCCeEEEE----eCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC------------
Q 004785           79 DARRGLASWVEAESLHHL----RPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG------------  139 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlW----d~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg------------  139 (730)
                      .....++.+..+|.|-+.    +.....   ...-..+|.+++||||+.+|+..+.+++|.+-+- +.            
T Consensus        85 ~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   85 ADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDD  163 (928)
T ss_pred             cCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccc
Confidence            355567777788888877    544432   2334668999999999999999999988877643 11            


Q ss_pred             ------------eEEEEEec------------------------CCCCcEEEEEccCCCCEEEEEeC---C---CcEEEE
Q 004785          140 ------------SCLKVLHG------------------------HRRTPWVVRFHPLNPTIIASGSL---D---HEVRLW  177 (730)
Q Consensus       140 ------------~~l~~l~g------------------------H~~~V~sVafSP~dg~lLaSgS~---D---gtVrLW  177 (730)
                                  +.-..|+|                        +...-..|+|-. |+.+|+..+.   +   ..+|||
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy  242 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVY  242 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEE
Confidence                        11111211                        111234588988 8899888664   2   579999


Q ss_pred             ECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--Ce--EEEEEcCCCccccCCeEE--ecCCCCeEEEEEccCCCeE
Q 004785          178 NASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HK--LYIWRYNMREETSSPRIV--LRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       178 Dl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~--I~VWDl~t~~~~~~~~~l--~~h~~~V~sVaFSPdG~~L  250 (730)
                      +-. |+....-+ -.+--.+++|-|.|+++|+...  ++  |.+|.-+.-+.-.  +.+  ......|..+.|++|+..|
T Consensus       243 ~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge--F~l~~~~~~~~v~~l~Wn~ds~iL  319 (928)
T PF04762_consen  243 SRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE--FTLRFDPEEEKVIELAWNSDSEIL  319 (928)
T ss_pred             CCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee--EecCCCCCCceeeEEEECCCCCEE
Confidence            965 66544433 2233357899999999998873  22  7778644332211  112  1345689999999999977


Q ss_pred             EEEE
Q 004785          251 LLTA  254 (730)
Q Consensus       251 latg  254 (730)
                      +...
T Consensus       320 Av~~  323 (928)
T PF04762_consen  320 AVWL  323 (928)
T ss_pred             EEEe
Confidence            6644

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.24  E-value=0.026  Score=64.22  Aligned_cols=175  Identities=13%  Similarity=0.141  Sum_probs=116.8

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC-----------CCeEEEEECCC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQT  138 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~-----------DgtVrVWDl~t  138 (730)
                      ..+--+..|..|++.-..| |.+|--..-   .--.|+ .|.-+.|||+.++|+|-+.           ...++|||+.+
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            3333445666777665544 667765432   122354 4889999999999998764           25799999999


Q ss_pred             CeEEEEEecC--CCCcE-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE---C
Q 004785          139 GSCLKVLHGH--RRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS---G  211 (730)
Q Consensus       139 g~~l~~l~gH--~~~V~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS---d  211 (730)
                      |...+.|..-  ...++ -..||- +++++|--..| +|.|++..+-.++.... .-..|....|+|.+++||.=+   +
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             cchhcceeccCCCccccceEEecc-CCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            9988888652  22233 468998 88888876664 69999987644332222 235688899999999998776   2


Q ss_pred             C---eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          212 H---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       212 d---~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +   ++.+..+.+...++..   .-+.-.-..+.|-.+|.+|+.-.
T Consensus       370 ~~parvtL~evPs~~~iRt~---nlfnVsDckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTK---NLFNVSDCKLHWQKSGDYLCVKV  412 (698)
T ss_pred             CCcceEEEEecCccceeeec---cceeeeccEEEeccCCcEEEEEE
Confidence            2   2788888777654421   11222224577889999887644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.20  E-value=0.028  Score=61.99  Aligned_cols=232  Identities=17%  Similarity=0.194  Sum_probs=129.5

Q ss_pred             CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ec-------C---------C
Q 004785           90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HG-------H---------R  149 (730)
Q Consensus        90 DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~g-------H---------~  149 (730)
                      .+.+.++|+.+++   +......+....|||||+.|+... ++.|++++..++...+.- .|       -         -
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~  100 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF  100 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred             ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence            3467888888873   333356789999999999999885 579999998887544221 12       0         1


Q ss_pred             CCcEEEEEccCCCCEEEEEeCC-Cc-----------------------------------EEEEECCCCeEEEE--e---
Q 004785          150 RTPWVVRFHPLNPTIIASGSLD-HE-----------------------------------VRLWNASTAECIGS--R---  188 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~D-gt-----------------------------------VrLWDl~tg~~i~~--l---  188 (730)
                      +.-..+-|+| +++.|+....| ..                                   +.++|+.+++....  .   
T Consensus       101 ~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  101 DRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             ccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            2235688999 77766654322 22                                   33455555443211  1   


Q ss_pred             -cCCCCeEEEEEcCCCCEEEEE-EC---Ce--EEEEEcCCCccccCCeEEecCCCCe---EEEEEc-cCCCeEEEEEeeC
Q 004785          189 -DFYRPIASIAFHASGELLAVA-SG---HK--LYIWRYNMREETSSPRIVLRTRRSL---RAVHFH-PHAAPLLLTAEVN  257 (730)
Q Consensus       189 -~h~~~V~sVafSPdG~~LAsg-Sd---d~--I~VWDl~t~~~~~~~~~l~~h~~~V---~sVaFS-PdG~~Llatgsvw  257 (730)
                       .....+..+.|.++++.|++. .+   +.  +.++|..++....  .........|   ....|. +++..++..... 
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~--~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~-  256 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV--VLEETSDGWVDVYDPPHFLGPDGNEFLWISER-  256 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE--EEEEESSSSSSSSSEEEE-TTTSSEEEEEEET-
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE--EEEecCCcceeeecccccccCCCCEEEEEEEc-
Confidence             123457789999999944433 32   22  7788887765422  1122223333   355554 777767665542 


Q ss_pred             CccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-eeeEecCCCEEEEEecCCC-CCcccceee
Q 004785          258 DLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHTEHD-SGATRTQQS  335 (730)
Q Consensus       258 dl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~~~~~~d-sgs~~~~~~  335 (730)
                                    +|+     ..+.+.+...+....+..+    ...+. ...++.+++.|++..+.+. .-..++..+
T Consensus       257 --------------~G~-----~hly~~~~~~~~~~~lT~G----~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~  313 (353)
T PF00930_consen  257 --------------DGY-----RHLYLYDLDGGKPRQLTSG----DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS  313 (353)
T ss_dssp             --------------TSS-----EEEEEEETTSSEEEESS-S----SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred             --------------CCC-----cEEEEEcccccceeccccC----ceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence                          222     1344444333221111111    22232 5789999999999777644 344677777


Q ss_pred             cC-CCcceeeecccC
Q 004785          336 LR-SSSSVRLLTYST  349 (730)
Q Consensus       336 ~~-ss~~~~l~~~~~  349 (730)
                      +. +....+|+....
T Consensus       314 ~~~~~~~~~LT~~~~  328 (353)
T PF00930_consen  314 LDSGGEPKCLTCEDG  328 (353)
T ss_dssp             TTETTEEEESSTTSS
T ss_pred             eCCCCCeEeccCCCC
Confidence            77 666666654433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.17  E-value=0.0026  Score=74.28  Aligned_cols=132  Identities=18%  Similarity=0.257  Sum_probs=97.7

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC-----------CCEEEEEeCCCcEEEE
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN-----------PTIIASGSLDHEVRLW  177 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d-----------g~lLaSgS~DgtVrLW  177 (730)
                      .-.++.|+|.| +||.|+.. .|.+.|..+.+.+..+..|...|+.|.|.|..           .-+++++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            36789999866 77877654 78899999999999999999999999998831           1257778888999999


Q ss_pred             ECCCCeEEEEec-CCCCeEEEEEcC---CCC-EEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785          178 NASTAECIGSRD-FYRPIASIAFHA---SGE-LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       178 Dl~tg~~i~~l~-h~~~V~sVafSP---dG~-~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP  245 (730)
                      |...+..+..+. +.+++..++|-+   +.+ +|+.-. ...|.+|+..+|+...   ..........++.+.|
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DP  165 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDP  165 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCC
Confidence            999988777766 567888888865   443 444443 4569999999987633   1222233445566766

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.15  E-value=0.0047  Score=71.86  Aligned_cols=134  Identities=19%  Similarity=0.355  Sum_probs=96.1

Q ss_pred             CeEEEEECCCC---CEEEEEeCCCeEEEEECCCC---eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          109 STIAAAFSPDG---KTLASTHGDHTVKIIDCQTG---SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       109 ~Vt~lafSPDG---~~LaSgS~DgtVrVWDl~tg---~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                      .|-.+.|++..   .++++.+. ..-.+|++...   ..-..+.+|...|+.+.|+|++...+++++.|-.|..||+++.
T Consensus        69 ~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            46778888843   34555544 45668988542   3335668999999999999999999999999999999999975


Q ss_pred             e-EEEEec-CCCCeEEEEEcC-CCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc
Q 004785          183 E-CIGSRD-FYRPIASIAFHA-SGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       183 ~-~i~~l~-h~~~V~sVafSP-dG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP  245 (730)
                      . ++..+. -......|+|+- ++..||+.-+..|++||++.+..  ....+.+|-..|+.+.|..
T Consensus       148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~--pl~s~K~~vs~vn~~~fnr  211 (1081)
T KOG0309|consen  148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST--PLCSLKGHVSSVNSIDFNR  211 (1081)
T ss_pred             CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc--ceEEecccceeeehHHHhh
Confidence            4 333332 234456788986 45566555455599999998875  2345666777777777764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.14  E-value=0.0055  Score=67.62  Aligned_cols=131  Identities=16%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcEEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLSPP--PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRF  157 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~gH--~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~sVaf  157 (730)
                      +..++....++.+..||.+++++.-.  ........  .++..++.++.|+.|..+|..+|+.+....... ........
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i  318 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV  318 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence            45677778899999999987742211  11111111  256788888899999999999998876553222 22222233


Q ss_pred             ccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC-CeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004785          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVAS-GHKLYIW  217 (730)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~-~V~sVafSPdG~~LAsgS-dd~I~VW  217 (730)
                         .++.++.++.||.|+++|..+|+.+..+.... .+..--.-.+++ |++++ ++.|+.|
T Consensus       319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~  376 (377)
T TIGR03300       319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF  376 (377)
T ss_pred             ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence               34678889999999999999999988876433 332221222444 55555 5567765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.11  E-value=0.024  Score=69.49  Aligned_cols=173  Identities=12%  Similarity=0.163  Sum_probs=109.5

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC----CC------------
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC----QT------------  138 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl----~t------------  138 (730)
                      ......++.+..+|.|.+-|..+..   ...-..+|.+++||||+.+++..+.++++.+-+-    -.            
T Consensus        77 l~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~s  156 (1265)
T KOG1920|consen   77 LADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKS  156 (1265)
T ss_pred             ecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccc
Confidence            3455677777888888888887763   2345678999999999999999988888766432    00            


Q ss_pred             -------CeEEEEEecCCC---------------------CcEEEEEccCCCCEEEEE----eCC-CcEEEEECCCCeEE
Q 004785          139 -------GSCLKVLHGHRR---------------------TPWVVRFHPLNPTIIASG----SLD-HEVRLWNASTAECI  185 (730)
Q Consensus       139 -------g~~l~~l~gH~~---------------------~V~sVafSP~dg~lLaSg----S~D-gtVrLWDl~tg~~i  185 (730)
                             |+.-..|.|..+                     .=..|.|-- ++.++++.    ..+ +.|++||-. |..-
T Consensus       157 k~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Ln  234 (1265)
T KOG1920|consen  157 KFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALN  234 (1265)
T ss_pred             ccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhh
Confidence                   111122332111                     112488987 88888873    234 789999977 4432


Q ss_pred             EEe-cCCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          186 GSR-DFYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       186 ~~l-~h~~~V~sVafSPdG~~LAsgS----dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      ..- ...+--.+++|-|.|.++++-.    ++.|.+|.-+.-....-..........|..++|+.++..|+.
T Consensus       235 s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv  306 (1265)
T KOG1920|consen  235 STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV  306 (1265)
T ss_pred             cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence            221 1233446899999999998875    344888875443321100111112334899999999996655

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.10  E-value=0.021  Score=62.88  Aligned_cols=92  Identities=18%  Similarity=0.158  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEeC---------CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785          116 SPDGKTLASTHG---------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (730)
Q Consensus       116 SPDG~~LaSgS~---------DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~  186 (730)
                      |||+++++...+         .+.+.|||+++++....... ...+....|+| +++.++... ++.|.++++.+++..+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence            688888777533         46799999999875443333 56788999999 788877765 5789999998886655


Q ss_pred             EecCC------------------CCeEEEEEcCCCCEEEEEE
Q 004785          187 SRDFY------------------RPIASIAFHASGELLAVAS  210 (730)
Q Consensus       187 ~l~h~------------------~~V~sVafSPdG~~LAsgS  210 (730)
                      .....                  +.-..+-|||||++||...
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            43211                  2235788999999998775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.05  E-value=0.032  Score=62.03  Aligned_cols=172  Identities=16%  Similarity=0.101  Sum_probs=92.6

Q ss_pred             cCCCEEEEEeCCCe--EEEEeCCCC---CCCCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           79 DARRGLASWVEAES--LHHLRPKYC---PLSPPPR-STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        79 d~g~~L~Sgs~Dgs--IrlWd~~t~---~L~gH~~-~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ++.+.|+.+..|+.  +.+.|+.++   +|....+ ......++++.+.|+.......|+..|+++.+....+......+
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~  125 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK  125 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence            45556665555555  566677776   3544432 23356778888888877677789999999998877777777766


Q ss_pred             EEEEEcc-CCCCEEEEEe----------------------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004785          153 WVVRFHP-LNPTIIASGS----------------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV  208 (730)
Q Consensus       153 ~sVafSP-~dg~lLaSgS----------------------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAs  208 (730)
                      -...|.. .+...++-.-                      ....|..-|+.+|+....+.....+..+-|+|... +|+.
T Consensus       126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f  205 (386)
T PF14583_consen  126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF  205 (386)
T ss_dssp             EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred             cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence            6677753 2444443321                      12346667999999888888888899999999655 5555


Q ss_pred             EECC---e--EEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEE
Q 004785          209 ASGH---K--LYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       209 gSdd---~--I~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPdG~~Lla  252 (730)
                      +-.+   .  -|||-+++.....  ..+..+  ...+..=-|.|||+.|..
T Consensus       206 CHEGpw~~Vd~RiW~i~~dg~~~--~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  206 CHEGPWDLVDQRIWTINTDGSNV--KKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             EE-S-TTTSS-SEEEEETTS-----EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             eccCCcceeceEEEEEEcCCCcc--eeeecCCCCcccccccccCCCCEEEE
Confidence            5432   2  3667665443211  111111  223444457777776554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.01  E-value=0.13  Score=57.68  Aligned_cols=245  Identities=13%  Similarity=0.026  Sum_probs=133.0

Q ss_pred             EecCCCEEE-EEeCCCe----EEEEeCCCCCCCCCC--C-CeEEEEECCCCCEEEEEeCC-----------CeEEEEECC
Q 004785           77 GRDARRGLA-SWVEAES----LHHLRPKYCPLSPPP--R-STIAAAFSPDGKTLASTHGD-----------HTVKIIDCQ  137 (730)
Q Consensus        77 ~~d~g~~L~-Sgs~Dgs----IrlWd~~t~~L~gH~--~-~Vt~lafSPDG~~LaSgS~D-----------gtVrVWDl~  137 (730)
                      .+.+++.++ +.+..|.    |+++|++++++....  . ....+.|.+|++.|+....|           ..|++|++.
T Consensus       131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g  210 (414)
T PF02897_consen  131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG  210 (414)
T ss_dssp             ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred             ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence            333444444 4455444    999999988533211  1 12239999998887776543           248888987


Q ss_pred             CCeE--EEEEecCCCC--cEEEEEccCCCCEEEE-EeC--C-CcEEEEECCCC-----eEEEEecCCCCeEEEEEcCCCC
Q 004785          138 TGSC--LKVLHGHRRT--PWVVRFHPLNPTIIAS-GSL--D-HEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGE  204 (730)
Q Consensus       138 tg~~--l~~l~gH~~~--V~sVafSP~dg~lLaS-gS~--D-gtVrLWDl~tg-----~~i~~l~h~~~V~sVafSPdG~  204 (730)
                      +...  ...|.+....  ...+..++ ++++++. ...  + ..+.+.|+..+     +..........+....-+..+.
T Consensus       211 t~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~  289 (414)
T PF02897_consen  211 TPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDR  289 (414)
T ss_dssp             S-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTE
T ss_pred             CChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCE
Confidence            7643  3556554444  45788888 6666554 333  2 45888899875     3444444444443333333444


Q ss_pred             EEEEEECC----eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCC
Q 004785          205 LLAVASGH----KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPP  280 (730)
Q Consensus       205 ~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~  280 (730)
                      +++...++    +|...++...........+..+...+.-..+...+.+|+.....+...                    
T Consensus       290 ~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~--------------------  349 (414)
T PF02897_consen  290 LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS--------------------  349 (414)
T ss_dssp             EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE--------------------
T ss_pred             EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc--------------------
Confidence            44444332    366667766653221225666666555455555677777665433221                    


Q ss_pred             eEEEecCC-CCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeee
Q 004785          281 VICMAGAH-SSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (730)
Q Consensus       281 ~V~l~d~~-s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~  345 (730)
                      .+.+.+.. ......+..  +. ...+......+++..+.+.-.+...+.+++..++.+.....+.
T Consensus       350 ~l~v~~~~~~~~~~~~~~--p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  350 RLRVYDLDDGKESREIPL--PE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             EEEEEETT-TEEEEEEES--SS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             EEEEEECCCCcEEeeecC--Cc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence            23333322 000000000  00 0112244556889999999999999999999999988877664

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.97  E-value=0.00018  Score=82.22  Aligned_cols=169  Identities=17%  Similarity=0.177  Sum_probs=117.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeC----CCeEEEEECCCC--eE--EEEEe
Q 004785           82 RGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHG----DHTVKIIDCQTG--SC--LKVLH  146 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP-DG~~LaSgS~----DgtVrVWDl~tg--~~--l~~l~  146 (730)
                      -.++.|..+|.|.+-.....      ...+|....++++|++ |-.+||.|-+    |..++|||+.++  .+  ...|.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            45567778888888776543      3557888899999999 7788888844    778999999876  21  22232


Q ss_pred             c-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcC-CCCEEEEEECCeEEEEE-cCCCc
Q 004785          147 G-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASGHKLYIWR-YNMRE  223 (730)
Q Consensus       147 g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSP-dG~~LAsgSdd~I~VWD-l~t~~  223 (730)
                      + ......+++|-. +.+++.+|.....+.++|++........-....+..+..+| .+.+++.-.++.|-+|| .++-+
T Consensus       151 ~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnie  229 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIE  229 (783)
T ss_pred             cccccCcccccccc-CcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhc
Confidence            2 334566889986 88999999999999999998432222222334567788888 78899888888899999 44333


Q ss_pred             cccCCeEEecCC-----CCeEEEEEccCCCeEEEEE
Q 004785          224 ETSSPRIVLRTR-----RSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       224 ~~~~~~~l~~h~-----~~V~sVaFSPdG~~Llatg  254 (730)
                      .   +....-+.     ..+..++|+|...-++++.
T Consensus       230 n---pl~~i~~~~N~~~~~l~~~aycPtrtglla~l  262 (783)
T KOG1008|consen  230 N---PLQIILRNENKKPKQLFALAYCPTRTGLLAVL  262 (783)
T ss_pred             c---HHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence            2   11222222     2489999999776555544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.94  E-value=0.014  Score=64.38  Aligned_cols=137  Identities=12%  Similarity=0.019  Sum_probs=89.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE-E
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-V  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s-V  155 (730)
                      +..++.+..++.|..+|..++++.    -.........  .++..++.++.|+.|+.+|..+|+.+....... .+.+ .
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p  141 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP  141 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence            557888888899999998877422    1111111222  257788888899999999999999887665332 2221 1


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEE------EEEcCCCCEEEEEE-CCeEEEEEcCCCccc
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS------IAFHASGELLAVAS-GHKLYIWRYNMREET  225 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~s------VafSPdG~~LAsgS-dd~I~VWDl~t~~~~  225 (730)
                      ..   .++.++.++.|+.|+.||.++|+.+..+........      .... + ..++.+. ++.++.+|..+++..
T Consensus       142 ~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       142 LV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             EE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEe
Confidence            22   235666778899999999999998887654432211      1111 3 3555665 466999999888653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.93  E-value=0.016  Score=58.86  Aligned_cols=106  Identities=18%  Similarity=0.080  Sum_probs=73.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCC----C
Q 004785          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFY----R  192 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~----~  192 (730)
                      ++..+++++.++.|..||..+|+.+..+.. .+.+......  .+..++.+..|+.|+.+|..+|+.+... ...    .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            567788888999999999999999888765 3332222222  3455666678889999999999998873 321    1


Q ss_pred             CeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          193 PIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       193 ~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      .........++..++++. ++.|+.+|.++++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLW  146 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEE
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEE
Confidence            122233333478788887 6679999999998643

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=96.87  E-value=0.0047  Score=77.69  Aligned_cols=154  Identities=14%  Similarity=0.222  Sum_probs=116.7

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t  181 (730)
                      ++.|-..|.++.=+|...+.++|+.||.|++|.-..+..+..++. -...|+.+.|+- .|+.+..+..||.+.+|.+..
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence            345566788888888888999999999999999988888877742 237799999998 888888889999999999973


Q ss_pred             CeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe--
Q 004785          182 AECIGSRDFYRPIASIAFHASGELLAVAS---GHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE--  255 (730)
Q Consensus       182 g~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs--  255 (730)
                      .-.+.-..|........|--  ..+++++   +++ +.+||........  .+...|...++.+++-|....+++++.  
T Consensus      2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcC
Confidence            22222234777777777764  5666665   444 9999986654422  344779999999999999997777665  


Q ss_pred             ---eCCccC
Q 004785          256 ---VNDLDS  261 (730)
Q Consensus       256 ---vwdl~s  261 (730)
                         +||++.
T Consensus      2359 ~v~l~D~rq 2367 (2439)
T KOG1064|consen 2359 EVCLFDIRQ 2367 (2439)
T ss_pred             cEEEeehHH
Confidence               677663

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.86  E-value=0.04  Score=56.03  Aligned_cols=140  Identities=18%  Similarity=0.059  Sum_probs=90.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC-----CC---CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLS-----PP---PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~-----gH---~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      .+..++....++.|..+|..++++.     ..   ......+....++..++.+..++.|..+|.++|+.+..+......
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            3455666667888999998777321     11   011222333334788888888999999999999998888764432


Q ss_pred             c-----------EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004785          152 P-----------WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRY  219 (730)
Q Consensus       152 V-----------~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl  219 (730)
                      .           ..+.+.  ++ .++.++.++.+..+|+.+++.+.... ...+.. ....++..|++++ ++.|..||+
T Consensus       155 ~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred             CCcceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence            1           122222  33 66666777754444999999765444 333333 2456788888887 666999999


Q ss_pred             CCCcc
Q 004785          220 NMREE  224 (730)
Q Consensus       220 ~t~~~  224 (730)
                      .+++.
T Consensus       230 ~tG~~  234 (238)
T PF13360_consen  230 KTGKV  234 (238)
T ss_dssp             TTTEE
T ss_pred             CCCCE
Confidence            99875

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.84  E-value=0.03  Score=65.62  Aligned_cols=100  Identities=17%  Similarity=0.285  Sum_probs=67.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCC----C-eEEEEEecCCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECCCCeE-------
Q 004785          118 DGKTLASTHGDHTVKIIDCQT----G-SCLKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAEC-------  184 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~t----g-~~l~~l~gH~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~-------  184 (730)
                      ||++...  .++.|.+.|..+    + +.+..+. -....+.+.++| +++++ +++..+.+|.|.|+.+.+.       
T Consensus       287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            4444433  346799999887    3 3444443 445688899999 55555 5566699999999988553       


Q ss_pred             -----EEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004785          185 -----IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (730)
Q Consensus       185 -----i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t  221 (730)
                           +......-.-...+|+++|+...+.. |..|-.|++.+
T Consensus       363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                 23333334445788999998655555 55699999876

>smart00320 WD40 WD40 repeats

Probab=96.81  E-value=0.0035  Score=42.61  Aligned_cols=39  Identities=38%  Similarity=0.641  Sum_probs=34.5

Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE
Q 004785          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN  178 (730)
Q Consensus       139 g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD  178 (730)
                      ++++..+..|...|.++.|++ ++.++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            456677888999999999999 779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.73  E-value=0.15  Score=60.89  Aligned_cols=176  Identities=15%  Similarity=0.140  Sum_probs=118.5

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCC-eEEEEECCCCCEEEEEeCCC-----eEEEEECCCC------eE
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC---PLSPPPRS-TIAAAFSPDGKTLASTHGDH-----TVKIIDCQTG------SC  141 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~-Vt~lafSPDG~~LaSgS~Dg-----tVrVWDl~tg------~~  141 (730)
                      ...++..++.|..+|.|-+++....   -+..+... |..+-...+..+|++-+.|.     .|+|||++.-      .+
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c  110 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC  110 (933)
T ss_pred             EcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence            3457788999999999988886543   24556666 44444333446788877764     4899998542      23


Q ss_pred             E--EEEec-----CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC--C--Ce-EEEEecCCCCeEEEEEcCCCCE-EEE
Q 004785          142 L--KVLHG-----HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS--T--AE-CIGSRDFYRPIASIAFHASGEL-LAV  208 (730)
Q Consensus       142 l--~~l~g-----H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~--t--g~-~i~~l~h~~~V~sVafSPdG~~-LAs  208 (730)
                      +  ..+..     ...++.+++++. +-..++.|-.||.|..+.-.  .  |. ..-....+.+|+.++|-.+++. |++
T Consensus       111 ~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv  189 (933)
T KOG2114|consen  111 LYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV  189 (933)
T ss_pred             eeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence            3  12222     245678899998 78899999999999987422  1  11 1112345679999999999986 667


Q ss_pred             EECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       209 gSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ++...|.+|.+....  .....+..|...+.+..|++....++++++
T Consensus       190 ~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~  234 (933)
T KOG2114|consen  190 ATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS  234 (933)
T ss_pred             EecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC
Confidence            777789999988444  123346667788999999886663444443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0031  Score=69.90  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             CEEEEEeCCCeEEEEeCCC--C-----CCCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCC--------------
Q 004785           82 RGLASWVEAESLHHLRPKY--C-----PLSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTG--------------  139 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t--~-----~L~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg--------------  139 (730)
                      +.+++++-||.++.|....  +     -+..|.+.|.+++.+-||.++.|.++ |..++++|+++-              
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~  100 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF  100 (558)
T ss_pred             heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence            4555666666666665433  1     13345555556666666666666555 666666655321              


Q ss_pred             --------------------------------e-EE-EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC----
Q 004785          140 --------------------------------S-CL-KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----  181 (730)
Q Consensus       140 --------------------------------~-~l-~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t----  181 (730)
                                                      . .. ..-+-|..+|..+.+.+ .++.+++....|.|.-|....    
T Consensus       101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccC
Confidence                                            1 11 11134788899999999 888999998899999998873    


Q ss_pred             --CeEEEEe----------cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785          182 --AECIGSR----------DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (730)
Q Consensus       182 --g~~i~~l----------~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~  224 (730)
                        .+....+          ..+....++.|+|+|..+.+-+.+. |+++++++++.
T Consensus       180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl  235 (558)
T KOG0882|consen  180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL  235 (558)
T ss_pred             ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence              1111111          1345678999999999999888555 99999998865

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.59  E-value=0.04  Score=65.08  Aligned_cols=139  Identities=15%  Similarity=0.166  Sum_probs=84.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEe------CCC--eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC------
Q 004785          106 PPRSTIAAAFSPDGKTLASTH------GDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD------  171 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS------~Dg--tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D------  171 (730)
                      ....+...++||||+.++..-      .|.  .|.+++. .+.......+.  ..+.-.|+| ++..+.+....      
T Consensus       348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECC-CCCceEEEecCcceEEE
Confidence            334688999999999987765      243  4555564 23332223332  377899999 66655554322      


Q ss_pred             ------CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEE---EEcCCCc-cccCCeEEec-CCCCeEE
Q 004785          172 ------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI---WRYNMRE-ETSSPRIVLR-TRRSLRA  240 (730)
Q Consensus       172 ------gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~V---WDl~t~~-~~~~~~~l~~-h~~~V~s  240 (730)
                            +.+.+.++..++...  ...+.|..+.|||||+.|+...+++|+|   -....+. .+..+..+.. -...+.+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~  501 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS  501 (591)
T ss_pred             eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence                  234334554444332  3456799999999999999888777776   4433332 1111222322 2334688


Q ss_pred             EEEccCCCeE
Q 004785          241 VHFHPHAAPL  250 (730)
Q Consensus       241 VaFSPdG~~L  250 (730)
                      +.|..++..+
T Consensus       502 l~W~~~~~L~  511 (591)
T PRK13616        502 LDWRTGDSLV  511 (591)
T ss_pred             ceEecCCEEE
Confidence            9999999844

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=96.59  E-value=0.039  Score=64.92  Aligned_cols=136  Identities=12%  Similarity=0.161  Sum_probs=98.7

Q ss_pred             EEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC------C------EEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           84 LASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG------K------TLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        84 L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG------~------~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      |+.-+....|.+.|..+-    .+..|+..|+.+.|.|-.      .      +||++...|.|.+||+..+..+..+..
T Consensus        28 LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~  107 (1062)
T KOG1912|consen   28 LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSH  107 (1062)
T ss_pred             eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcC
Confidence            333444556666675543    466799999999998721      1      466676789999999999998888999


Q ss_pred             CCCCcEEEEEccC--CC-CEEEEEeCCCcEEEEECCCCeEEEEecCCCCeE-EEEEcC-CCCEEE-EEECCeEEEEEc
Q 004785          148 HRRTPWVVRFHPL--NP-TIIASGSLDHEVRLWNASTAECIGSRDFYRPIA-SIAFHA-SGELLA-VASGHKLYIWRY  219 (730)
Q Consensus       148 H~~~V~sVafSP~--dg-~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~-sVafSP-dG~~LA-sgSdd~I~VWDl  219 (730)
                      |..++..+.|-+.  +. ++++.-....+|.+|+..+|+..........+. ++.++| |.+.+. .++.+.+.+-+.
T Consensus       108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            9999999998762  33 567777778899999999999998877555554 488888 455444 444555555554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.58  E-value=0.027  Score=68.03  Aligned_cols=133  Identities=13%  Similarity=0.129  Sum_probs=92.8

Q ss_pred             CCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC------CCCEEEEEeCCCcEEEEECCCCe--EEEE-
Q 004785          118 DGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL------NPTIIASGSLDHEVRLWNASTAE--CIGS-  187 (730)
Q Consensus       118 DG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~------dg~lLaSgS~DgtVrLWDl~tg~--~i~~-  187 (730)
                      |.++|+.- .+...|+-.|++.|+.+..++.|... .-..+.|+      .....+.|-.++.+..||.+-..  .+.. 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            33444433 34678999999999999999988754 23445551      23456778888999999998632  3321 


Q ss_pred             ---ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          188 ---RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       188 ---l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                         +.......|++-+.+|. ||+|+ +|.||+||- .+..  ....+.+-..+|..|..+.||+++++|+.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR-LGKR--AKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             ccccccCCCceEEEecCCce-EEEEeCCCcEEeecc-cchh--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence               22445677888877775 56666 566999993 3332  23345566889999999999999999997

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK10115 protease 2; Provisional

Probab=96.57  E-value=2.6  Score=51.00  Aligned_cols=230  Identities=12%  Similarity=0.026  Sum_probs=118.5

Q ss_pred             eEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEECCCC--eEEEEEecCCCCcEEEEEccCC
Q 004785           92 SLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTG--SCLKVLHGHRRTPWVVRFHPLN  161 (730)
Q Consensus        92 sIrlWd~~t~~--L~gH~~~Vt~lafSPDG~~LaSgS~D------gtVrVWDl~tg--~~l~~l~gH~~~V~sVafSP~d  161 (730)
                      .|++.|+.++.  .......-..++|++|++.|+....+      ..|+++++.++  +....+.+.........+.+.+
T Consensus       154 ~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d  233 (686)
T PRK10115        154 GIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTS  233 (686)
T ss_pred             EEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCC
Confidence            47888887775  22222222569999999877766542      47888999888  4445565444444433343435


Q ss_pred             CCEEEEEe---CCCcEEEEECC--CCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C--eEEEEEcCCCccccCCeEEec
Q 004785          162 PTIIASGS---LDHEVRLWNAS--TAECIGSRDFYRPIASIAFHASGELLAVASG-H--KLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       162 g~lLaSgS---~DgtVrLWDl~--tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d--~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      +++++..+   .++.+.+++..  +++....+.....+..-..+. +..|..-++ +  .-+|..+..... .....+..
T Consensus       234 ~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~tn~~~~~~~l~~~~~~~~-~~~~~l~~  311 (686)
T PRK10115        234 KHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLRSNRHGKNFGLYRTRVRDE-QQWEELIP  311 (686)
T ss_pred             CCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEEEcCCCCCceEEEecCCCc-ccCeEEEC
Confidence            55444432   34679999953  344333333333222212233 344444442 2  234443332211 12234555


Q ss_pred             C-C-CCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeE
Q 004785          234 T-R-RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSF  311 (730)
Q Consensus       234 h-~-~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~F  311 (730)
                      + . ..|..+.++  +++++.+.......                    .+.+.+........+....+.   ......+
T Consensus       312 ~~~~~~i~~~~~~--~~~l~~~~~~~g~~--------------------~l~~~~~~~~~~~~l~~~~~~---~~~~~~~  366 (686)
T PRK10115        312 PRENIMLEGFTLF--TDWLVVEERQRGLT--------------------SLRQINRKTREVIGIAFDDPA---YVTWIAY  366 (686)
T ss_pred             CCCCCEEEEEEEE--CCEEEEEEEeCCEE--------------------EEEEEcCCCCceEEecCCCCc---eEeeecc
Confidence            5 2 367777776  44666665432211                    111111111110011000000   0112223


Q ss_pred             --ecCCCEEEEEecCCCCCcccceeecCCCcceeeeccc
Q 004785          312 --VRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLTYS  348 (730)
Q Consensus       312 --SpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~~~  348 (730)
                        .++++.+.+...+...+...+..+..+...+.|+...
T Consensus       367 ~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~  405 (686)
T PRK10115        367 NPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTE  405 (686)
T ss_pred             cCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecC
Confidence              3677889999999999999999998877666666443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.01  Score=68.33  Aligned_cols=93  Identities=14%  Similarity=0.121  Sum_probs=81.3

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i  185 (730)
                      ...|.-+.|+|.-.+||++..+|.|.+..+. ...+.++.-|...++ +++|.| +|++++.|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            4467889999999999999999999999887 777888887888888 999999 8999999999999999999999888


Q ss_pred             EE--ecCCCCeEEEEEcC
Q 004785          186 GS--RDFYRPIASIAFHA  201 (730)
Q Consensus       186 ~~--l~h~~~V~sVafSP  201 (730)
                      ..  +-....|.++-|++
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            77  44566788888874

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.29  Score=54.79  Aligned_cols=146  Identities=14%  Similarity=0.175  Sum_probs=100.9

Q ss_pred             CeEEEEECCCCCEEEE-EeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe--CCCcEEEEECCCCeEE
Q 004785          109 STIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECI  185 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS--~DgtVrLWDl~tg~~i  185 (730)
                      .-..++.++++..++. ...+..|.+.|..+.+.+....--. ....++++|+++.+.++-.  .++++.+.|-.+++.+
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            3457888888885544 4456899999988877766554222 5678999994445555544  4789999999999888


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          186 GSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       186 ~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ....-...-..++++|+|+.+++..  ++.|.+.|........ .......-......+.++|+|.++.....
T Consensus       154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence            8754332238999999999888877  4559999976654431 11111233345578899999997666543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.51  E-value=0.012  Score=68.53  Aligned_cols=138  Identities=13%  Similarity=0.126  Sum_probs=96.5

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~  184 (730)
                      |...|.--+++..+++|+.|+.-|.|++|+-..++... ...+-.+.+.....++ +..+++.|+..|.|.++-+..+.+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            44455555666789999999999999999976665432 2223445566777888 888999999999999998876432


Q ss_pred             E---EE--e--cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCC-ccccCCeEEecCCCCeEEEEEc
Q 004785          185 I---GS--R--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFH  244 (730)
Q Consensus       185 i---~~--l--~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~-~~~~~~~~l~~h~~~V~sVaFS  244 (730)
                      .   ..  .  .|+..|++++|++|+..|++|.+ |+|.+-.++.. ........+..-...|-.+...
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            1   11  1  26789999999999999999985 45777766662 2122233444556677666654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.44  Score=53.35  Aligned_cols=167  Identities=16%  Similarity=0.185  Sum_probs=114.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           83 GLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      ..+....++.|.+.|..+.+..   .-......++|+++++.++.+..   ++++.+.|..+++.+.....-..+ ..++
T Consensus        88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a  166 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVA  166 (381)
T ss_pred             EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEE
Confidence            4444555788999986554211   11115678999999988877755   689999999999888775443333 8899


Q ss_pred             EccCCCC-EEEEEeCCCcEEEEECCCCeEEE-----EecCCCCeEEEEEcCCCCEEEEEECC----eEEEEEcCCCcccc
Q 004785          157 FHPLNPT-IIASGSLDHEVRLWNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGH----KLYIWRYNMREETS  226 (730)
Q Consensus       157 fSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~-----~l~h~~~V~sVafSPdG~~LAsgSdd----~I~VWDl~t~~~~~  226 (730)
                      +.| ++. .+++-..++.|.+.|........     ..........+.++|+|+++++..++    .+.+.|..++....
T Consensus       167 ~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         167 VDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             ECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            999 666 55555688999999987665553     13333455779999999987777633    58888887765433


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      .. ...+.. ....+.++|+|+.+...
T Consensus       246 ~~-~~~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         246 TD-LPVGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             ec-cccccC-CCCceeECCCCCEEEEE
Confidence            10 111222 56678999999977665

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.33  E-value=0.085  Score=61.98  Aligned_cols=134  Identities=8%  Similarity=-0.023  Sum_probs=90.6

Q ss_pred             EEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------------------
Q 004785          113 AAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------------------  169 (730)
Q Consensus       113 lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS----------------------  169 (730)
                      +=+++||+.+...++ .+.+.+.|.++.+...++.--. ....++++| ++.++++.+                      
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence            445678877654443 5678888998888777665332 446678888 666665554                      


Q ss_pred             ------------------CCCcEEEEECCC-----CeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcc
Q 004785          170 ------------------LDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREE  224 (730)
Q Consensus       170 ------------------~DgtVrLWDl~t-----g~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~  224 (730)
                                        .++.|.+.|.++     .+.+..+.-......+.++|||+++++++  ++.|.|.|+.+.+.
T Consensus       276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                              234588888887     45666677778889999999999999988  45699999987653


Q ss_pred             cc-----C---CeEEecCCCCeEEEEEccCCC
Q 004785          225 TS-----S---PRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       225 ~~-----~---~~~l~~h~~~V~sVaFSPdG~  248 (730)
                      .-     .   ......-.......+|+++|.
T Consensus       356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~  387 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN  387 (635)
T ss_pred             hhhccCCccceEEEeeccCCCcceEEECCCCC
Confidence            10     0   001111133456788999987

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.23  E-value=0.077  Score=62.08  Aligned_cols=143  Identities=12%  Similarity=0.009  Sum_probs=100.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-----EEE-
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-----KVL-  145 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l-----~~l-  145 (730)
                      ....++.++.|+..|.+.+|+-..+.     ..+-.+.+..+..|++..++|.|+..+.|.++-+..+...     ..+ 
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d  120 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD  120 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc
Confidence            34577899999999999999987662     2235566778888999899999999999999987663221     111 


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-----~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~  220 (730)
                      +.|...|+++.|++ ++..+++|...|+|.+-.+.+.     +....+...+.|-.+...  ..+|.+++--+..++++.
T Consensus       121 ~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r~~Lc~tE  197 (726)
T KOG3621|consen  121 KSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTRCILCQTE  197 (726)
T ss_pred             ccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhhhheeecc
Confidence            34788899999999 9999999999999998888762     112223455666666543  334444443344555554


Q ss_pred             CC
Q 004785          221 MR  222 (730)
Q Consensus       221 t~  222 (730)
                      ..
T Consensus       198 ~e  199 (726)
T KOG3621|consen  198 AE  199 (726)
T ss_pred             hh
Confidence            43

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.13  E-value=0.092  Score=60.02  Aligned_cols=131  Identities=12%  Similarity=0.159  Sum_probs=64.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l  188 (730)
                      ....+.++|+|++++. +.||.-.|+.....+....     +.-....|.+ .++ +++-...++|.|+.--+.+..+.+
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT---
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceEE
Confidence            3567888888887777 4566666776444433221     2233467776 333 555555777777532222222233


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          189 DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       189 ~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .....+..+-.   |.+|...+++.|.+||+.+++.+.   .+ ... .|..|.|+++|.+++..++
T Consensus       106 ~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~---~i-~v~-~vk~V~Ws~~g~~val~t~  164 (443)
T PF04053_consen  106 KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIR---RI-DVS-AVKYVIWSDDGELVALVTK  164 (443)
T ss_dssp             --SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEE---EE-SS--E-EEEEE-TTSSEEEEE-S
T ss_pred             cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceee---EE-ecC-CCcEEEEECCCCEEEEEeC
Confidence            33333443332   777777777778888887776544   22 222 3778888888887776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.07  E-value=0.34  Score=54.23  Aligned_cols=157  Identities=18%  Similarity=0.150  Sum_probs=88.5

Q ss_pred             EEEEeCCCCCCCCC-CCCeEEEEECCCCCEEEEE-eCC----CeEEEEECCCCeEEEE-EecCCCCcEEEEEccCCCCEE
Q 004785           93 LHHLRPKYCPLSPP-PRSTIAAAFSPDGKTLAST-HGD----HTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTII  165 (730)
Q Consensus        93 IrlWd~~t~~L~gH-~~~Vt~lafSPDG~~LaSg-S~D----gtVrVWDl~tg~~l~~-l~gH~~~V~sVafSP~dg~lL  165 (730)
                      -.++|...-. .++ ...+....+||||++||.+ +..    ..|+++|+++|+.+.. +...  ....+.|.+ +++.|
T Consensus       109 evllD~n~l~-~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-d~~~~  184 (414)
T PF02897_consen  109 EVLLDPNELA-KDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-DGKGF  184 (414)
T ss_dssp             EEEEEGGGGS-TTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-TSSEE
T ss_pred             EEEEcchHhh-ccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-CCCEE
Confidence            4556654321 122 2334478999999998876 222    4599999999987653 2322  123499999 65555


Q ss_pred             EEEeCC-----------CcEEEEECCCCeEE--EEec--CCCC-eEEEEEcCCCCEEEEEE---CC--eEEEEEcCCCc-
Q 004785          166 ASGSLD-----------HEVRLWNASTAECI--GSRD--FYRP-IASIAFHASGELLAVAS---GH--KLYIWRYNMRE-  223 (730)
Q Consensus       166 aSgS~D-----------gtVrLWDl~tg~~i--~~l~--h~~~-V~sVafSPdG~~LAsgS---dd--~I~VWDl~t~~-  223 (730)
                      +....|           ..|++|.+.+....  ..+.  .... ...+..++|+++|+..+   ..  .+++.|+.... 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            444322           23888998876432  3343  2333 67889999999887665   22  28888887751 


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      .......+......+....-+..+.+++.+
T Consensus       265 ~~~~~~~l~~~~~~~~~~v~~~~~~~yi~T  294 (414)
T PF02897_consen  265 PDAKPKLLSPREDGVEYYVDHHGDRLYILT  294 (414)
T ss_dssp             SS-SEEEEEESSSS-EEEEEEETTEEEEEE
T ss_pred             CcCCcEEEeCCCCceEEEEEccCCEEEEee
Confidence            111223444444444443333344444333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins

Probab=95.99  E-value=0.004  Score=52.21  Aligned_cols=43  Identities=23%  Similarity=0.252  Sum_probs=24.0

Q ss_pred             CCCCCcceecccccccccCCCCccceeeeccCcceeecCCCCe
Q 004785           30 HRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQ   72 (730)
Q Consensus        30 ~rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~   72 (730)
                      +|.|||||+|+...++|.++.+++.....||.+..+.+..|-+
T Consensus         3 vR~SKfRhv~g~~~kke~~y~~i~vs~~~~d~n~i~~N~kfiA   45 (65)
T PF08953_consen    3 VRSSKFRHVFGKPAKKEECYDNIRVSTSSWDSNFIAANPKFIA   45 (65)
T ss_dssp             ----TTTT-EEEE--GGGSEES--B-----SS-CEEE-SSEEE
T ss_pred             ccccccccccCccCCccccCcCEEEeCccccCCeEEEcCCEEE
Confidence            6899999999999999999999999999999999888866633

The function is unknown. ; PDB: 2B4E_A 2AQ5_A.

>smart00320 WD40 WD40 repeats

Probab=95.99  E-value=0.01  Score=40.23  Aligned_cols=32  Identities=44%  Similarity=0.586  Sum_probs=29.1

Q ss_pred             CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 004785          104 SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (730)
Q Consensus       104 ~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD  135 (730)
                      ..|...|.++.|++++.++++++.|+.+++||
T Consensus         9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            35778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=0.029  Score=64.75  Aligned_cols=92  Identities=12%  Similarity=0.125  Sum_probs=74.4

Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeE-EEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-SIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~-sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      ..+.-+.|+| .-.++|.+..+|.|.+.-+. .+.+..+. ++..+. +++|.|||++||+|- |++|++.|+.++..+.
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4577899999 99999999999999999988 77788877 666676 999999999999998 5669999999987654


Q ss_pred             CCeEEecCCCCeEEEEEcc
Q 004785          227 SPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSP  245 (730)
                      ..  ...-...|..+.|++
T Consensus        99 ~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SF--LFSVETDISKGIWDR  115 (665)
T ss_pred             cc--ccccccchheeeccc
Confidence            21  233456778888863

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.84  E-value=0.26  Score=52.02  Aligned_cols=134  Identities=15%  Similarity=0.042  Sum_probs=92.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~L~g---H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ..+.+..++.++..+.+.-.|.+++.+.-   -...|.+-+.- -|++++.|...+.+++.+.++|+....+..-. .|.
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk   96 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVK   96 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhc
Confidence            34567788888888888888888774321   11223222221 47889999999999999999998887776433 233


Q ss_pred             E-EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCe-EEEEEcC-CCCEEEEEECCe
Q 004785          154 V-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI-ASIAFHA-SGELLAVASGHK  213 (730)
Q Consensus       154 s-VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V-~sVafSP-dG~~LAsgSdd~  213 (730)
                      + ....+ ++.++..++.|++.+..|.++..++.+.+-.+.+ .+-+..| ++.+.++...+.
T Consensus        97 ~~a~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~  158 (354)
T KOG4649|consen   97 VRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA  158 (354)
T ss_pred             cceEEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence            2 34455 8899999999999999999999998887655443 3445566 454444443443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.80  E-value=0.42  Score=50.45  Aligned_cols=143  Identities=16%  Similarity=0.224  Sum_probs=88.8

Q ss_pred             CeEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEE-CCCCeE
Q 004785          109 STIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN-ASTAEC  184 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWD-l~tg~~  184 (730)
                      .+...++++||+.+|...   ....++++..  +.....+. -...+..-.|++ ++.+.+....+...+++. ..+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence            688999999999887766   3345666554  33232221 223677889999 677777766666677773 333332


Q ss_pred             EEE-ec---CCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCcc-----ccCCeEEe-cCCCCeEEEEEccCCCeE
Q 004785          185 IGS-RD---FYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREE-----TSSPRIVL-RTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       185 i~~-l~---h~~~V~sVafSPdG~~LAsgS----dd~I~VWDl~t~~~-----~~~~~~l~-~h~~~V~sVaFSPdG~~L  250 (730)
                      ... ..   ....|.++.+||||..+|...    +++|+|=-+.....     +..+..+. .....+..+.|.+++..+
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            221 11   222899999999999888776    44476665532211     11111222 235688999999999866


Q ss_pred             EEEEe
Q 004785          251 LLTAE  255 (730)
Q Consensus       251 latgs  255 (730)
                      +.+..
T Consensus       181 V~~~~  185 (253)
T PF10647_consen  181 VLGRS  185 (253)
T ss_pred             EEeCC
Confidence            65543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.79  E-value=0.49  Score=43.96  Aligned_cols=98  Identities=14%  Similarity=0.118  Sum_probs=65.6

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785          110 TIAAAFSP---DG-KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (730)
Q Consensus       110 Vt~lafSP---DG-~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i  185 (730)
                      |++|++..   || +.|+.|++|..|++|+-  .+.+..+..+ ..|..+.-..  ...|+.+..+|+|-+|+-  .+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence            56666655   33 47999999999999983  4566777655 4466666554  478999999999999976  3444


Q ss_pred             EEecCCCCeEEEEEc-CCC--C-EEEEEE-CCeE
Q 004785          186 GSRDFYRPIASIAFH-ASG--E-LLAVAS-GHKL  214 (730)
Q Consensus       186 ~~l~h~~~V~sVafS-PdG--~-~LAsgS-dd~I  214 (730)
                      .....+..+.++.+. .+|  . -|++|- +++|
T Consensus        75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv  108 (111)
T PF14783_consen   75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV  108 (111)
T ss_pred             eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence            555555556666643 333  2 566665 4444

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=0.56  Score=56.28  Aligned_cols=135  Identities=9%  Similarity=0.172  Sum_probs=90.9

Q ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-----EEEEECCCC------
Q 004785          114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-----VRLWNASTA------  182 (730)
Q Consensus       114 afSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-----VrLWDl~tg------  182 (730)
                      +|++.+..++.|+.||.|.+.+ ++-+.+..|+.+...+-..-|.-++.+++++.+.|.+     |+|||+..-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            3567788999999999998887 3345557788777773333344325578888776654     899998742      


Q ss_pred             eEE---EEec-----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCe
Q 004785          183 ECI---GSRD-----FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAP  249 (730)
Q Consensus       183 ~~i---~~l~-----h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~  249 (730)
                      .++   ..+.     ...++.+++.|-+-+.+|+|-+++ |..+.-+-..... ..........+|+.+.|..+++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence            233   2222     245788999999988999998655 7777543221111 12233445779999999999987

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.66  E-value=0.84  Score=56.68  Aligned_cols=142  Identities=11%  Similarity=0.144  Sum_probs=94.7

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC----CCCe
Q 004785          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA----STAE  183 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl----~tg~  183 (730)
                      +.|.++.|.-++..|+.+..+|.|.+-|.++... .....-...|.+++|+| +..+++-.+.++++.+-+-    -..+
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEeccccchhcc
Confidence            6799999999999999999999999998877652 22333456799999999 9999988888887766432    1111


Q ss_pred             EE-----------EE--------ec----------------------CCCCeEEEEEcCCCCEEEEEE-----C-CeEEE
Q 004785          184 CI-----------GS--------RD----------------------FYRPIASIAFHASGELLAVAS-----G-HKLYI  216 (730)
Q Consensus       184 ~i-----------~~--------l~----------------------h~~~V~sVafSPdG~~LAsgS-----d-d~I~V  216 (730)
                      .+           ..        +.                      ..+.-.+|+|--||+++|+..     + .+|+|
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV  226 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV  226 (1265)
T ss_pred             ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence            11           00        00                      001123599999999999854     4 34999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ||-+ +....   .-.....-=.+++|-|.|..+++...
T Consensus       227 ~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  227 YDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             eccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence            9976 32211   11111223357899999997666543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.63  E-value=0.57  Score=50.35  Aligned_cols=152  Identities=13%  Similarity=0.200  Sum_probs=102.4

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      .+.+-...|.++.|+|+.+.|++..+...-.||=...|+.++++.-. -...-.|.+.. ++.++++--.++.+.++.+.
T Consensus        80 pi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          80 PILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             ccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEc
Confidence            35666677999999999999999988888888877889988876421 12345688877 77888888889999988776


Q ss_pred             CCeEEEE-------e---cC-CCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecC-------CCCeEEE
Q 004785          181 TAECIGS-------R---DF-YRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRT-------RRSLRAV  241 (730)
Q Consensus       181 tg~~i~~-------l---~h-~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h-------~~~V~sV  241 (730)
                      ....+..       +   .+ +.....++|+|....|.++-..+ +.||.+..............+       -..|.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            5532211       1   22 56788999999999998887665 666665543311111111111       1356788


Q ss_pred             EEccCCCeEEEEE
Q 004785          242 HFHPHAAPLLLTA  254 (730)
Q Consensus       242 aFSPdG~~Llatg  254 (730)
                      .|++....+++-+
T Consensus       239 ~~~~~~~~LLVLS  251 (316)
T COG3204         239 EFNAITNSLLVLS  251 (316)
T ss_pred             eecCCCCcEEEEe
Confidence            8887655555433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=0.13  Score=57.40  Aligned_cols=141  Identities=12%  Similarity=0.045  Sum_probs=107.4

Q ss_pred             EEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC------CeEEE---------
Q 004785           85 ASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT------GSCLK---------  143 (730)
Q Consensus        85 ~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t------g~~l~---------  143 (730)
                      ++..+++.|.++|....      .-+-|..+|.++.+++-+..+++....|.|.-|....      .+...         
T Consensus       116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy  195 (558)
T KOG0882|consen  116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY  195 (558)
T ss_pred             eecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence            35567888999996532      2346899999999999999999998899999999862      11111         


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---------------------------------
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---------------------------------  190 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h---------------------------------  190 (730)
                      .+...+....++.|+| ++..+.+-+.|..|++++.++|+.++.++.                                 
T Consensus       196 ~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~  274 (558)
T KOG0882|consen  196 GFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH  274 (558)
T ss_pred             cccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence            1223456678999999 999999999999999999999876554320                                 


Q ss_pred             C-CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004785          191 Y-RPIASIAFHASGELLAVASGHKLYIWRYNMREETS  226 (730)
Q Consensus       191 ~-~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~  226 (730)
                      . ..-..+.|+..|++|..++==+|+|.++.+++..+
T Consensus       275 ~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~r  311 (558)
T KOG0882|consen  275 GSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVR  311 (558)
T ss_pred             cCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEE
Confidence            0 01245789999999999987789999999887644

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.49  E-value=0.036  Score=65.58  Aligned_cols=111  Identities=18%  Similarity=0.266  Sum_probs=82.4

Q ss_pred             EEEEECCCCCEEEEEeC----CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785          111 IAAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (730)
Q Consensus       111 t~lafSPDG~~LaSgS~----DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~  186 (730)
                      +-..|+|...+|++++.    .|.|.||- ++|++-+...- .-.+.+++||| ..-.++.|-.-|.+.+|...+.+.-.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccCh-HHHHHhhccccceeEEEecCCceeee
Confidence            34568888888887764    57888874 56765433221 11255799999 87888899999999999987655433


Q ss_pred             E-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcc
Q 004785          187 S-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREE  224 (730)
Q Consensus       187 ~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~  224 (730)
                      . ..|..+|..+.||++|..|.++..-+ |.+|.+.....
T Consensus        96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~  135 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE  135 (1416)
T ss_pred             eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc
Confidence            3 45899999999999999999998644 99998875544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.48  E-value=0.22  Score=55.55  Aligned_cols=132  Identities=12%  Similarity=0.041  Sum_probs=81.8

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcEEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRF  157 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~sVaf  157 (730)
                      +..++.+..++.+..+|..+++..  ........+.  .++..|+.++.|+.|..+|..+|+.+.....-. .......+
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v  333 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL  333 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE
Confidence            345666777888888888877421  1111111122  246788888899999999999998765443211 11222333


Q ss_pred             ccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC-CCeEE-EEEcCCCCEEEEEE-CCeEEEEEc
Q 004785          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIAS-IAFHASGELLAVAS-GHKLYIWRY  219 (730)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~-~~V~s-VafSPdG~~LAsgS-dd~I~VWDl  219 (730)
                         .+..++.++.||.|.+.|..+|+.+...... ..+.+ ..+  .+..|++++ ++.|+.++.
T Consensus       334 ---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        334 ---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence               2456778899999999999999988776532 22322 222  234566666 455877654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.37  E-value=0.14  Score=58.60  Aligned_cols=157  Identities=14%  Similarity=0.167  Sum_probs=82.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEcc
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP  159 (730)
                      .++.++. ..|+...++.....+- ...+.-....|..++ .+|+-....+|+|+.--+.+..+.++.. ..+.  ....
T Consensus        43 ngr~v~V-~g~geY~iyt~~~~r~-k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~--~If~  116 (443)
T PF04053_consen   43 NGRFVLV-CGDGEYEIYTALAWRN-KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVE--KIFG  116 (443)
T ss_dssp             TSSEEEE-EETTEEEEEETTTTEE-EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----S-S-EE--EEE-
T ss_pred             CCCEEEE-EcCCEEEEEEccCCcc-cccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcCC-cccc--eEEc
Confidence            3443333 5677777777432211 122345578898854 4666666888999632222222333321 1122  2222


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC-------cccc-CCeEE
Q 004785          160 LNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR-------EETS-SPRIV  231 (730)
Q Consensus       160 ~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~-------~~~~-~~~~l  231 (730)
                        |.+|...+.+ .|.+||+.+++.+..+.... |..+.|+++|++++..+++.++|++.+..       +... ....+
T Consensus       117 --G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~  192 (443)
T PF04053_consen  117 --GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELI  192 (443)
T ss_dssp             --SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred             --CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEE
Confidence              5666665554 79999999999999988665 89999999999999999999998887654       0000 11122


Q ss_pred             ecCCCCeEEEEEccC
Q 004785          232 LRTRRSLRAVHFHPH  246 (730)
Q Consensus       232 ~~h~~~V~sVaFSPd  246 (730)
                      ..-...|.+..|..|
T Consensus       193 ~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  193 HEISERIKSGCWVED  207 (443)
T ss_dssp             EEE-S--SEEEEETT
T ss_pred             EEecceeEEEEEEcC
Confidence            332678888889876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.27  E-value=0.62  Score=52.02  Aligned_cols=137  Identities=10%  Similarity=-0.021  Sum_probs=82.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCCC------CCC-----CeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           83 GLASWVEAESLHHLRPKYCPLSP------PPR-----STIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~~L~g------H~~-----~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .++.+..++.+..+|.++++..-      ..+     ....+.-+|  .+..++.++.++.+..+|..+|+.+....-  
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--  284 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--  284 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--
Confidence            45556677778777777663210      000     011112233  355777788899999999999987755431  


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-C-CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-Y-RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~-~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      +....+..   .+..++.++.|+.+..+|..+|+.+..... . ....+...  .+..|++++ ++.|++.|..+++...
T Consensus       285 ~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        285 GSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             CCccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            11222222   346677778899999999999987765432 1 11222222  244556666 5559999999887543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.14  E-value=2.6  Score=46.04  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=92.0

Q ss_pred             CCeEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEE-EeCCCcEE
Q 004785          108 RSTIAAAFSPDGKTLASTHG-----------DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS-GSLDHEVR  175 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~-----------DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaS-gS~DgtVr  175 (730)
                      ...+.+...|+|.+-++...           -+.|+.+|. .+..++.+..+-..-+.|+||| +++.++. =+..+.|.
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~  188 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIH  188 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEE
Confidence            45678888999987766544           133555554 5677777777666778899999 6655554 45558888


Q ss_pred             EEECCC--C----eEEEE-e-cCCCCeEEEEEcCCCCEEEEEEC-C-eEEEEEcCCCccccCCeEEecCCCCeEEEEEc-
Q 004785          176 LWNAST--A----ECIGS-R-DFYRPIASIAFHASGELLAVASG-H-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-  244 (730)
Q Consensus       176 LWDl~t--g----~~i~~-l-~h~~~V~sVafSPdG~~LAsgSd-d-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS-  244 (730)
                      -|++..  +    +.... + ...+..-.++.+.+|.+.+++-. + .|.+|+.+ ++...   .+.-....+++++|- 
T Consensus       189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG  264 (307)
T COG3386         189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGG  264 (307)
T ss_pred             EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeC
Confidence            887752  2    11111 1 13455667888889987754443 3 69999988 65533   333333677888885 


Q ss_pred             cCCCeEEEEEeeC
Q 004785          245 PHAAPLLLTAEVN  257 (730)
Q Consensus       245 PdG~~Llatgsvw  257 (730)
                      ++.+.|.+++...
T Consensus       265 ~~~~~L~iTs~~~  277 (307)
T COG3386         265 PDLNTLYITSARS  277 (307)
T ss_pred             CCcCEEEEEecCC
Confidence            4567677666543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.11  E-value=1.7  Score=45.66  Aligned_cols=142  Identities=12%  Similarity=0.050  Sum_probs=93.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-C--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-----------
Q 004785           79 DARRGLASWVEAESLHHLRPKY-C--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-----------  144 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t-~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-----------  144 (730)
                      ..+..|+.|.++| +.+++... .  +...+...|..+...++-+.|+.-+ |+.++++++..-.....           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            3567888888888 78888722 2  1222334499999999877776665 49999999866443321           


Q ss_pred             ---EecCCCCcEEEE-EccCCCCEEEEEeCCCcEEEEECCCC-----eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEE
Q 004785          145 ---LHGHRRTPWVVR-FHPLNPTIIASGSLDHEVRLWNASTA-----ECIGSRDFYRPIASIAFHASGELLAVASGHKLY  215 (730)
Q Consensus       145 ---l~gH~~~V~sVa-fSP~dg~lLaSgS~DgtVrLWDl~tg-----~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~  215 (730)
                         -......+...+ -....+...+.......|.+|.....     +..+.+.....+.+++|.  ++.|++|..+...
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~  160 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFY  160 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceE
Confidence               011222344333 11223444444455558888877653     455667778899999998  7788888888899


Q ss_pred             EEEcCCCcc
Q 004785          216 IWRYNMREE  224 (730)
Q Consensus       216 VWDl~t~~~  224 (730)
                      +.|+.++..
T Consensus       161 ~idl~~~~~  169 (275)
T PF00780_consen  161 LIDLNTGSP  169 (275)
T ss_pred             EEecCCCCc
Confidence            999987654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.07  E-value=0.72  Score=48.39  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=81.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE-----------
Q 004785          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG-----------  186 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~-----------  186 (730)
                      .++.|+.|.++| |++++.........+. +...|..+..-+ .-+.++.-+ |+.++++|+..-....           
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            578999999998 9999983332222222 223399999998 666665543 5999999987644333           


Q ss_pred             ----EecCCCCeEEEE---EcCCCCEEEEEECCeEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          187 ----SRDFYRPIASIA---FHASGELLAVASGHKLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       187 ----~l~h~~~V~sVa---fSPdG~~LAsgSdd~I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                          .+.....+...+   -...+..|+++...+|.+|.+....... ...........+..+.|.  ++.++.+.
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~  155 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT  155 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe
Confidence                122233444444   2234457888878888888886642111 122334456888999998  44455543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.06  E-value=1.4  Score=49.28  Aligned_cols=141  Identities=14%  Similarity=0.172  Sum_probs=79.8

Q ss_pred             eEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785          110 TIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~  186 (730)
                      .+.=+|..||++|+.+++   ...+++.|+.+++..+.-.+-........++| +.+.++.......|+-.|+.+.+...
T Consensus        38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEE
Confidence            334467889988777766   45788889999986554443323344577788 56766666666789999999988766


Q ss_pred             EecCCC-CeEEEEEc--CCCCEEEEEE----C-------------------CeEEEEEcCCCccccCCeEEecCCCCeEE
Q 004785          187 SRDFYR-PIASIAFH--ASGELLAVAS----G-------------------HKLYIWRYNMREETSSPRIVLRTRRSLRA  240 (730)
Q Consensus       187 ~l~h~~-~V~sVafS--PdG~~LAsgS----d-------------------d~I~VWDl~t~~~~~~~~~l~~h~~~V~s  240 (730)
                      .+.... .+-...|.  .|+..++..-    +                   .+|.-.|+.+++.    ..+......+..
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH  192 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGH  192 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEE
T ss_pred             EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccC
Confidence            665443 34346664  4566654331    1                   1255556666543    345556778899


Q ss_pred             EEEccCCCeEEEEEe
Q 004785          241 VHFHPHAAPLLLTAE  255 (730)
Q Consensus       241 VaFSPdG~~Llatgs  255 (730)
                      +.|+|....++.=|.
T Consensus       193 ~~fsP~dp~li~fCH  207 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCH  207 (386)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             cccCCCCCCEEEEec
Confidence            999998887777665

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.83  E-value=1.4  Score=51.20  Aligned_cols=150  Identities=15%  Similarity=0.134  Sum_probs=90.4

Q ss_pred             CCCCCCCeEEEEECCCC-----CEEEEEeCCCeEEEEECC-----CCeEEEEEecCC-C--C--cEEEEEccCCCCEEEE
Q 004785          103 LSPPPRSTIAAAFSPDG-----KTLASTHGDHTVKIIDCQ-----TGSCLKVLHGHR-R--T--PWVVRFHPLNPTIIAS  167 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG-----~~LaSgS~DgtVrVWDl~-----tg~~l~~l~gH~-~--~--V~sVafSP~dg~lLaS  167 (730)
                      ..|.-.-|..+.|.|-+     .+||+ -....|.||-+.     +++.+..-..+- .  +  .....||| ...+++.
T Consensus        52 viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~V  129 (671)
T PF15390_consen   52 VIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTV  129 (671)
T ss_pred             EeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEE
Confidence            44566679999999942     24554 455789999874     233332221111 1  1  23578999 6666665


Q ss_pred             EeCCCcEEEEECCCC--eEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCcccc-CCeEEecCCCCeEEEE
Q 004785          168 GSLDHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETS-SPRIVLRTRRSLRAVH  242 (730)
Q Consensus       168 gS~DgtVrLWDl~tg--~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~-~~~~l~~h~~~V~sVa  242 (730)
                      -.....-.+.++...  .....+...+.|.+.+|..||+.|+++-+..  -+|||-....... ....+..-.+.|.++.
T Consensus       130 LT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~  209 (671)
T PF15390_consen  130 LTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIE  209 (671)
T ss_pred             EecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEE
Confidence            444333345566533  2233366788999999999999988887666  7899865543322 1223445566777776


Q ss_pred             EccCCCeEEEEEe
Q 004785          243 FHPHAAPLLLTAE  255 (730)
Q Consensus       243 FSPdG~~Llatgs  255 (730)
                      -.-|.. ++.+.+
T Consensus       210 AT~dsq-VAvaTE  221 (671)
T PF15390_consen  210 ATVDSQ-VAVATE  221 (671)
T ss_pred             Eeccce-EEEEec
Confidence            655544 444443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.64  E-value=1  Score=47.65  Aligned_cols=150  Identities=14%  Similarity=0.139  Sum_probs=86.1

Q ss_pred             CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCC-CCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          102 PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      .+.+-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-.. +..-.|++.. ++.++++--.++.+.++++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEE
Confidence            3455566799999999755 5555666788888886 588887775432 4577899976 6777776667999999988


Q ss_pred             CCCe----E--EEE--ec----CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC--C-ccccCCeE------EecCCCC
Q 004785          180 STAE----C--IGS--RD----FYRPIASIAFHASGELLAVASGHK-LYIWRYNM--R-EETSSPRI------VLRTRRS  237 (730)
Q Consensus       180 ~tg~----~--i~~--l~----h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t--~-~~~~~~~~------l~~h~~~  237 (730)
                      ....    .  ...  +.    .+..+..++|+|.++.|+++-... ..||.++.  . .... ...      ....-..
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS-
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceecc
Confidence            4321    1  111  12    445689999999988888777544 55666544  1 1100 000      1112346


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004785          238 LRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       238 V~sVaFSPdG~~Llatg  254 (730)
                      +.+++++|....+++-+
T Consensus       173 ~S~l~~~p~t~~lliLS  189 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILS  189 (248)
T ss_dssp             --EEEEETTTTEEEEEE
T ss_pred             ccceEEcCCCCeEEEEE
Confidence            78999999876665544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.50  E-value=2  Score=46.88  Aligned_cols=137  Identities=19%  Similarity=0.202  Sum_probs=81.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe----cC-CCCc
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH----GH-RRTP  152 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~----gH-~~~V  152 (730)
                      .+..+++-...+.|..|+..++..  -.+...+.++..-.++..|+++.  .-+.+++.+++..+..+.    +. ....
T Consensus        36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~  113 (307)
T COG3386          36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRP  113 (307)
T ss_pred             CCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCC
Confidence            333455666677777777765521  12344445555444555565553  346677777666533332    11 1345


Q ss_pred             EEEEEccCCCCEEEEEeC-----------CCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEE
Q 004785          153 WVVRFHPLNPTIIASGSL-----------DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWR  218 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~-----------DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWD  218 (730)
                      +.+...| ++.+.++...           -|.|+..|. .+..++.+. +-..-+.++|||||+.|+.+..  ..|+-|+
T Consensus       114 ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~  191 (307)
T COG3386         114 NDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD  191 (307)
T ss_pred             CceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence            6788899 7777766433           133555554 344444443 3555688999999999988875  4477777


Q ss_pred             cC
Q 004785          219 YN  220 (730)
Q Consensus       219 l~  220 (730)
                      +.
T Consensus       192 ~d  193 (307)
T COG3386         192 LD  193 (307)
T ss_pred             cC
Confidence            75

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.46  E-value=1.8  Score=45.80  Aligned_cols=112  Identities=14%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---CeEEEEE--------ecCCCCcEEEEEccCCCCEEEEEeCCCc
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT---GSCLKVL--------HGHRRTPWVVRFHPLNPTIIASGSLDHE  173 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t---g~~l~~l--------~gH~~~V~sVafSP~dg~lLaSgS~Dgt  173 (730)
                      .+...+-.++|++.++.|+.+-+..-.+||.+..   ...+...        ......+.++.++|..+++++-...+..
T Consensus       115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~  194 (248)
T PF06977_consen  115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL  194 (248)
T ss_dssp             --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred             CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence            4566799999999888888887766666666543   2222211        1234568899999988888888889999


Q ss_pred             EEEEECCCCeEEEEecCC----------CCeEEEEEcCCCCEEEEEECCeEEEE
Q 004785          174 VRLWNASTAECIGSRDFY----------RPIASIAFHASGELLAVASGHKLYIW  217 (730)
Q Consensus       174 VrLWDl~tg~~i~~l~h~----------~~V~sVafSPdG~~LAsgSdd~I~VW  217 (730)
                      |..+| .+|+.+..+...          .....|+|+++|++.+++--+..++|
T Consensus       195 l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  195 LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            99999 567776654322          25789999999976655533435544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.38  E-value=2  Score=45.87  Aligned_cols=108  Identities=17%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             eEEEEECCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCCCC-cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 004785          110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRT-PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG  186 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~~~-V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~  186 (730)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+|+.+....-.... --.++..  +++++.-.=.++...+||..+-+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence            56788866777777777654  6888888888876554322211 1123332  33444445556666667766666666


Q ss_pred             EecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCC
Q 004785          187 SRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNM  221 (730)
Q Consensus       187 ~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t  221 (730)
                      .+...+.-..++  .||+.|+.+. +++|+++|..+
T Consensus       125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT
T ss_pred             EEecCCcceEEE--cCCCEEEEECCccceEEECCcc
Confidence            655554445555  3344444333 33466666544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.36  E-value=0.36  Score=55.24  Aligned_cols=133  Identities=12%  Similarity=0.126  Sum_probs=92.1

Q ss_pred             CCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCC-------EEEEEeCCCcEEEEECCCCeE--EE
Q 004785          117 PDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT-------IIASGSLDHEVRLWNASTAEC--IG  186 (730)
Q Consensus       117 PDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~-------lLaSgS~DgtVrLWDl~tg~~--i~  186 (730)
                      .+.++| .++.....++-.|++.|+.+..++-|.. |.-+.+.| +.+       .-+.|-.|..|.-||.+-...  +.
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceee
Confidence            344444 4455567788899999999999988877 88888888 322       234467788999999884221  11


Q ss_pred             Ee-----cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          187 SR-----DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       187 ~l-----~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..     .......|.+-.-+| ++++|+ ++.|++||- .+..  ....+.+-...|..|..+.||++|++|+.
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRR--AKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhh--hhhcccccCCceeeEEeeccCcEEEEecc
Confidence            11     123355566665565 566666 666999996 3332  22356667889999999999999999987

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.36  E-value=0.65  Score=57.27  Aligned_cols=167  Identities=14%  Similarity=0.125  Sum_probs=103.6

Q ss_pred             CeEEEEECCCCCEEEE--EeCCCeEEEEECCCCeE-----EEEEecC------CCCcEEEEEccCCCCEEEEEeCCCcEE
Q 004785          109 STIAAAFSPDGKTLAS--THGDHTVKIIDCQTGSC-----LKVLHGH------RRTPWVVRFHPLNPTIIASGSLDHEVR  175 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaS--gS~DgtVrVWDl~tg~~-----l~~l~gH------~~~V~sVafSP~dg~lLaSgS~DgtVr  175 (730)
                      .+..+..++|+...+.  .+++-.|..||+++-..     .+.|+.|      .....++.|+|.-....+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4666677778765443  45556899999965321     1222222      234567899985556677788899998


Q ss_pred             EEECCCCe-EEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCC--ccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          176 LWNASTAE-CIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       176 LWDl~tg~-~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~--~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      +..+..-. .+..+......++++|+|.|+.+++|-.++ +.-|.....  ..+..+...  ....|.+|.|-....+++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~--e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE--ENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC--CCcceeEEEEecceeEEE
Confidence            88776432 233456677889999999999999998544 655544332  121111111  157899999998888777


Q ss_pred             EEEeeC----CccCCCcceeEeccCCcccC
Q 004785          252 LTAEVN----DLDSSESSLTLATSPGYWRY  277 (730)
Q Consensus       252 atgsvw----dl~s~~~~~~l~t~sG~~~~  277 (730)
                      +-+...    +-+..+.........|+.+|
T Consensus       260 vy~n~ts~~~dpd~y~~~~~k~kp~g~~nF  289 (1405)
T KOG3630|consen  260 VYGNVTSETDDPDSYDQKMYKIKPDGSANF  289 (1405)
T ss_pred             EecccccCcCCchhhhhccccccCcceeee
Confidence            655533    33333333334445565544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.13  E-value=3  Score=44.00  Aligned_cols=102  Identities=12%  Similarity=0.055  Sum_probs=60.3

Q ss_pred             CcEEEEEccCCCCEEEEEe---CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEE-cCCCccc
Q 004785          151 TPWVVRFHPLNPTIIASGS---LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWR-YNMREET  225 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS---~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWD-l~t~~~~  225 (730)
                      .+...++++ +++.++...   ....++++..  +...........+....|+++|...++..+.. .+++. ...++..
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            688899999 666555444   3334555544  33333332445788899999988776666433 55553 2333221


Q ss_pred             cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          226 SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       226 ~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ............|..+.+||||.+++....
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~  131 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVE  131 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEe
Confidence            100011111128999999999999887764

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.05  E-value=1.4  Score=52.31  Aligned_cols=130  Identities=12%  Similarity=0.063  Sum_probs=72.8

Q ss_pred             CeEEEEECCCCCEEEEEeCC-C-----------eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEE
Q 004785          109 STIAAAFSPDGKTLASTHGD-H-----------TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL  176 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~D-g-----------tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrL  176 (730)
                      ..+.-.|+|||+.|++..+. .           .+.+.++..++...   ...+.|..++|+| |+..++... ++.|++
T Consensus       398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~V  472 (591)
T PRK13616        398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYL  472 (591)
T ss_pred             CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEE
Confidence            37889999999988877543 2           23333333333222   2345799999999 776665544 467777


Q ss_pred             ---EECCCCeEEE----Ee--cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec--CCCCeEEEEEcc
Q 004785          177 ---WNASTAECIG----SR--DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR--TRRSLRAVHFHP  245 (730)
Q Consensus       177 ---WDl~tg~~i~----~l--~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~--h~~~V~sVaFSP  245 (730)
                         -....|+...    .+  .....+.++.|..++.+++...+....+|.+........  .+..  ....+.+|+=++
T Consensus       473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~~vaa~~  550 (591)
T PRK13616        473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVVAVAASP  550 (591)
T ss_pred             EEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc--ccCCCCccCceEEEecCC
Confidence               4444554111    12  123346889999999965443333334444433322111  1122  245667777665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.86  E-value=2.2  Score=47.50  Aligned_cols=99  Identities=13%  Similarity=0.053  Sum_probs=57.1

Q ss_pred             CeEEEEECCCCCEEEEEe-----------CCC-eEEEEECCC--Ce--EEEEEecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004785          109 STIAAAFSPDGKTLASTH-----------GDH-TVKIIDCQT--GS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH  172 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS-----------~Dg-tVrVWDl~t--g~--~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg  172 (730)
                      ....|+|.++|+++++-.           ..+ .|.+++-.+  |+  ....|.........++|.+ ++ ++++ +.+.
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPPD   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCCe
Confidence            456889999998776642           223 677776443  33  3345544445578899988 66 5554 4443


Q ss_pred             cEEEEECCC-----CeEEEE---ecC-----CCCeEEEEEcCCCCEEEEEE
Q 004785          173 EVRLWNAST-----AECIGS---RDF-----YRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       173 tVrLWDl~t-----g~~i~~---l~h-----~~~V~sVafSPdG~~LAsgS  210 (730)
                      ..++.|...     ++....   +..     ....+.++|.|||++.++-+
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            333445432     121111   222     24477899999998655443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK10115 protease 2; Provisional

Probab=93.25  E-value=4.4  Score=49.06  Aligned_cols=111  Identities=11%  Similarity=0.034  Sum_probs=68.7

Q ss_pred             CCeEEEEECCCCCEEEEEeC-----CCeEEEEECCCCeEEE-EEecCCCCcEEEEEccCCCCEEEEEeCC-----CcEEE
Q 004785          108 RSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLD-----HEVRL  176 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~-~l~gH~~~V~sVafSP~dg~lLaSgS~D-----gtVrL  176 (730)
                      -.+..+.|||||++|+.+.+     ...|++.|+.+|+.+. .+.+ ..  ..++|.+++..++++...+     ..|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            45778899999999987744     3468999999887432 2222 11  4699999444455554322     36888


Q ss_pred             EECCCC--eEEEEecC-CCCeE-EEEEcCCCCEEEEEE-C---CeEEEEEcCC
Q 004785          177 WNASTA--ECIGSRDF-YRPIA-SIAFHASGELLAVAS-G---HKLYIWRYNM  221 (730)
Q Consensus       177 WDl~tg--~~i~~l~h-~~~V~-sVafSPdG~~LAsgS-d---d~I~VWDl~t  221 (730)
                      +++.++  +-...+.. ..... .+..+.|+++++..+ .   ..+.+|+...
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~  256 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL  256 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence            999887  33334432 22233 333444888766555 2   2389998644

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.18  E-value=5.5  Score=42.92  Aligned_cols=169  Identities=17%  Similarity=0.173  Sum_probs=102.4

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECC-CCCEEEEEeCCCe-EEEEECCCCeEEEEEecCCCC--c
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSP-DGKTLASTHGDHT-VKIIDCQTGSCLKVLHGHRRT--P  152 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSP-DG~~LaSgS~Dgt-VrVWDl~tg~~l~~l~gH~~~--V  152 (730)
                      ..|+...++..+++|++..--.       -...-..|+|+| ...-++.+-.-|+ ..++|..+.+...++...++.  .
T Consensus        44 ~~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfy  116 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFY  116 (366)
T ss_pred             ccCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceee
Confidence            3456667778888887642221       122234677888 3455666655444 577888877665554322221  1


Q ss_pred             EEEEEccCCCCEEEEEeCC-----CcEEEEECCCC-eEEEEec-CCCCeEEEEEcCCCCEEEEEECC-------------
Q 004785          153 WVVRFHPLNPTIIASGSLD-----HEVRLWNASTA-ECIGSRD-FYRPIASIAFHASGELLAVASGH-------------  212 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~D-----gtVrLWDl~tg-~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-------------  212 (730)
                      -.-.||| ++.+|+..-.|     |.|-|||.+.+ +.+..+. |.-.-..+.|.+||+.|+++.++             
T Consensus       117 GHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN  195 (366)
T COG3490         117 GHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN  195 (366)
T ss_pred             cccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence            1246899 88887775544     67999999843 2233333 45566789999999999887531             


Q ss_pred             ------eEEEEEcCCCccccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 004785          213 ------KLYIWRYNMREETSSPRIVL--RTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       213 ------~I~VWDl~t~~~~~~~~~l~--~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                            .+.+.|..+++.+. ...+.  .+.-.|+.++..+||+ +.+.+.
T Consensus       196 ldsMePSlvlld~atG~lie-kh~Lp~~l~~lSiRHld~g~dgt-vwfgcQ  244 (366)
T COG3490         196 LDSMEPSLVLLDAATGNLIE-KHTLPASLRQLSIRHLDIGRDGT-VWFGCQ  244 (366)
T ss_pred             hhhcCccEEEEeccccchhh-hccCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence                  13444544554433 12222  3456789999999998 444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.10  E-value=6.4  Score=42.95  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=76.5

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-C
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-T  181 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-t  181 (730)
                      ...-.+.+..+.-++||+++++++.-....-||--...-...-+.-...|..|.|.| ++.+.+.+ ..+.|++=|.. .
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCC
Confidence            344567899999999999999887766667787432211222233457899999999 77776654 88888888722 2


Q ss_pred             CeEEEE--ec---CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          182 AECIGS--RD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       182 g~~i~~--l~---h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      .+....  ..   ..-.+..++|.++++..++|+++.+. ...+.++.-........-...++.|.|..+.+-++.
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence            222211  11   22347899999999988888777544 334444432211111223556888888776554443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.09  E-value=0.84  Score=52.36  Aligned_cols=136  Identities=18%  Similarity=0.157  Sum_probs=90.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCC--EE-----EEEeCCCeEEEEECCC-Ce-EEEEEec
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGK--TL-----ASTHGDHTVKIIDCQT-GS-CLKVLHG  147 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~--~L-----aSgS~DgtVrVWDl~t-g~-~l~~l~g  147 (730)
                      .-.+.++.+...++-.|++++++.    -|.. |+-+.+.|+.+  .|     +.|-.|..|.-||.+- ++ .+..-++
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~  424 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS  424 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence            344556666677888888877432    2333 77788888654  23     3455688899999763 22 2322233


Q ss_pred             CC----CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-e-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785          148 HR----RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (730)
Q Consensus       148 H~----~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~  220 (730)
                      |.    ....|.+-.  ...+++.||.+|.|++||- .+..-++ + +...+|..|..+.||++|+..++.-+.+.|+.
T Consensus       425 kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  425 KQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             cccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            32    224444443  5678999999999999997 4443332 3 36789999999999999998888777777664

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=92.99  E-value=1.4  Score=53.58  Aligned_cols=130  Identities=13%  Similarity=0.103  Sum_probs=85.4

Q ss_pred             eCCCeEEEEeCCCCCC----CCCCC-CeEEEEECC-----CCCEEEEEeCCCeEEEEECCCCe--EEE-EEe--cCCCCc
Q 004785           88 VEAESLHHLRPKYCPL----SPPPR-STIAAAFSP-----DGKTLASTHGDHTVKIIDCQTGS--CLK-VLH--GHRRTP  152 (730)
Q Consensus        88 s~DgsIrlWd~~t~~L----~gH~~-~Vt~lafSP-----DG~~LaSgS~DgtVrVWDl~tg~--~l~-~l~--gH~~~V  152 (730)
                      .....|...|+.++++    ..|.. .|..++-..     +...-+.|-.+..+..||.+-..  .+. ..+  ......
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence            3456778888887753    23332 254444321     12345667788899999987532  221 111  123446


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE-EEe-cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSR-DFYRPIASIAFHASGELLAVASGHKLYIWRYN  220 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i-~~l-~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~  220 (730)
                      .|++-.  ...+||.|+.+|.||+||- .|+.- ..+ +...+|..|..+.||++|+..++.-|.|++..
T Consensus       581 s~~aTt--~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  581 SCFATT--EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             eEEEec--CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            666665  4668899999999999994 34322 223 35789999999999999998888888888863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.90  E-value=13  Score=42.22  Aligned_cols=164  Identities=12%  Similarity=0.095  Sum_probs=82.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC---C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEE
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCP---L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVL  145 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~---L-------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l  145 (730)
                      .......|+...+||+++++|.....   +       .-....+....+..+|-.+.+  .++.+.+.+-.... ..+.+
T Consensus        87 ~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~  164 (410)
T PF04841_consen   87 GWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRL  164 (410)
T ss_pred             EECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhcc
Confidence            33456788889999999999974221   0       011112222344445533333  34444443321111 11111


Q ss_pred             ecCCCC---------cEE-EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeE
Q 004785          146 HGHRRT---------PWV-VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKL  214 (730)
Q Consensus       146 ~gH~~~---------V~s-VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I  214 (730)
                      ..-...         ... ..++. +....+....++.+.+.+-...+.   +...+++..++.||+|++||.-.+ +.+
T Consensus       165 ~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l  240 (410)
T PF04841_consen  165 PEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNL  240 (410)
T ss_pred             ccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCE
Confidence            100000         000 12222 333333334444455333222111   333568999999999999998886 448


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004785          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~  248 (730)
                      .|...+-.+...  ..-.........+.|..+..
T Consensus       241 ~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  241 WVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             EEEECcccceeE--EeecCcCCCCcEEEEECCCc
Confidence            888765554322  11222345677888988765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=92.89  E-value=0.039  Score=63.84  Aligned_cols=131  Identities=17%  Similarity=0.208  Sum_probs=87.6

Q ss_pred             CCCeEEEEeCCCC--------CCCC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEcc
Q 004785           89 EAESLHHLRPKYC--------PLSP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP  159 (730)
Q Consensus        89 ~DgsIrlWd~~t~--------~L~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP  159 (730)
                      .|..+.+||..+.        .+.+ ......+++|-.|.+++.+|...+.++++|++.... ..-.-.+..+..+.+.|
T Consensus       127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp  205 (783)
T KOG1008|consen  127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDP  205 (783)
T ss_pred             ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecC
Confidence            3567999998765        1222 344566889998899999999999999999873321 11111234455677888


Q ss_pred             CCCCEEEEEeCCCcEEEEE-CCCCe-EEEEecC-----CCCeEEEEEcCCCC-EEEEEECC--eEEEEEcCC
Q 004785          160 LNPTIIASGSLDHEVRLWN-ASTAE-CIGSRDF-----YRPIASIAFHASGE-LLAVASGH--KLYIWRYNM  221 (730)
Q Consensus       160 ~dg~lLaSgS~DgtVrLWD-l~tg~-~i~~l~h-----~~~V~sVafSPdG~-~LAsgSdd--~I~VWDl~t  221 (730)
                      ...+++++-. |+.|-+|| .++-+ ++..+.+     ...+..++|+|... .|++.+.+  .|+++|+..
T Consensus       206 ~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  206 FSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            7778887755 99999999 33322 2222222     23589999999665 56666643  399998853

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.83  E-value=13  Score=42.47  Aligned_cols=174  Identities=15%  Similarity=0.177  Sum_probs=82.4

Q ss_pred             CCCEEEE-EeCCCeEEEEeCCCCCC--------CC---C----CCCeEEEEECCCCCEEEEEeC------CCeEEEEECC
Q 004785           80 ARRGLAS-WVEAESLHHLRPKYCPL--------SP---P----PRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQ  137 (730)
Q Consensus        80 ~g~~L~S-gs~DgsIrlWd~~t~~L--------~g---H----~~~Vt~lafSPDG~~LaSgS~------DgtVrVWDl~  137 (730)
                      .++.|+. +.....|.+.|..+...        ..   +    -..-..+-.-|+|..++++=.      -|-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            4555554 44788899999875411        10   0    011122333468988888732      2568888988


Q ss_pred             CCeEEEEEecCC---CCcEEEEEccCCCCEEEEEe--------------------CCCcEEEEECCCCeEEEEecCCC--
Q 004785          138 TGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGS--------------------LDHEVRLWNASTAECIGSRDFYR--  192 (730)
Q Consensus       138 tg~~l~~l~gH~---~~V~sVafSP~dg~lLaSgS--------------------~DgtVrLWDl~tg~~i~~l~h~~--  192 (730)
                      +.+.+.......   ..-+.+-|.| ..+.++|..                    ...++.+||+.+.+.++.+....  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            887777765432   2345688899 888888854                    23579999999999999987542  


Q ss_pred             -CeEEEEEc--CCCCEEEEEE--CCeEEEEEc-CCCccccCCeEEec-----------C-------CCCeEEEEEccCCC
Q 004785          193 -PIASIAFH--ASGELLAVAS--GHKLYIWRY-NMREETSSPRIVLR-----------T-------RRSLRAVHFHPHAA  248 (730)
Q Consensus       193 -~V~sVafS--PdG~~LAsgS--dd~I~VWDl-~t~~~~~~~~~l~~-----------h-------~~~V~sVaFSPdG~  248 (730)
                       -...|.|.  |+..+=++++  ...|..|-- ..++-..+......           .       ..-|+.+..|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence             34566664  5566655555  444544433 33321110000000           0       24578999999999


Q ss_pred             eEEEEE
Q 004785          249 PLLLTA  254 (730)
Q Consensus       249 ~Llatg  254 (730)
                      +|.+++
T Consensus       325 fLYvs~  330 (461)
T PF05694_consen  325 FLYVSN  330 (461)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            888775

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.82  E-value=0.48  Score=58.10  Aligned_cols=96  Identities=18%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC--CC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYC--PL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~--~L---~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ...++.++..|-|-..|....  .+   ..-.++|++++|+.||++++.|-.+|.|.+||+..++.++.+..|..+...+
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v  178 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV  178 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence            345666666666665555432  11   1235689999999999999999999999999999999999998887766554


Q ss_pred             E---EccCCCCEEEEEeCCCcEEEEEC
Q 004785          156 R---FHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       156 a---fSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      -   +.. ++..++++..-|.  +|.+
T Consensus       179 i~v~~t~-~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  179 IFVGRTS-QNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             EEEEEeC-CCcEEEEccCCCc--eEEE
Confidence            3   333 3446777766665  5544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.26  E-value=0.42  Score=37.56  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=29.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~  141 (730)
                      ...|.+++|+|...+||.+..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            446999999999999999999999999998 5554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.20  E-value=3.2  Score=44.65  Aligned_cols=187  Identities=17%  Similarity=0.179  Sum_probs=113.4

Q ss_pred             CCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----CCCC
Q 004785           31 RNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-----PLSP  105 (730)
Q Consensus        31 rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~g  105 (730)
                      |...|..+|.....++.........++++++-.  ++.+ +.++.+..++-     -...|.|.+||...+     .+..
T Consensus        88 rPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGv--fs~d-G~~LYATEndf-----d~~rGViGvYd~r~~fqrvgE~~t  159 (366)
T COG3490          88 RPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGV--FSPD-GRLLYATENDF-----DPNRGVIGVYDAREGFQRVGEFST  159 (366)
T ss_pred             cCCceEEEECCCCCcCcEEEecccCceeecccc--cCCC-CcEEEeecCCC-----CCCCceEEEEecccccceeccccc
Confidence            677888999888777766555555666666644  3322 34555542221     234577999998743     5777


Q ss_pred             CCCCeEEEEECCCCCEEEEEeC------C------------CeEEEEECCCCeEEEEE--e--cCCCCcEEEEEccCCCC
Q 004785          106 PPRSTIAAAFSPDGKTLASTHG------D------------HTVKIIDCQTGSCLKVL--H--GHRRTPWVVRFHPLNPT  163 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS~------D------------gtVrVWDl~tg~~l~~l--~--gH~~~V~sVafSP~dg~  163 (730)
                      |.-.-..+.|.+||+.|+.+..      |            -++.+.|..+|+.+.+.  .  -+.-.|..++..+ ++.
T Consensus       160 ~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgt  238 (366)
T COG3490         160 HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGT  238 (366)
T ss_pred             CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCc
Confidence            8878889999999999988743      1            12334454555544322  1  2334566777776 666


Q ss_pred             EEEEEeCCCc-----EEEEECCCCeEEEEec--------CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc
Q 004785          164 IIASGSLDHE-----VRLWNASTAECIGSRD--------FYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS  226 (730)
Q Consensus       164 lLaSgS~Dgt-----VrLWDl~tg~~i~~l~--------h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~  226 (730)
                      +++-+-.-|.     -.+=-...++.+..++        ....|-+|+.+-+..+++..+  ++...+||..++..+.
T Consensus       239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~  316 (366)
T COG3490         239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS  316 (366)
T ss_pred             EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence            5555432221     1111122344444332        335678889887777777766  3448999999997644

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=92.12  E-value=2.7  Score=45.56  Aligned_cols=129  Identities=9%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             CCEEEEEeC----------CCeEEEEECCCC----eEEEEE--ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          119 GKTLASTHG----------DHTVKIIDCQTG----SCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       119 G~~LaSgS~----------DgtVrVWDl~tg----~~l~~l--~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                      ..+|+.|..          .|.|.++++...    ..++.+  ....+.|++++--  ++.++++.  .+.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCc
Confidence            456777654          288999999884    233322  3456888888765  34444433  478999999887


Q ss_pred             e-EEEEecC--CCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          183 E-CIGSRDF--YRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       183 ~-~i~~l~h--~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~-~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      + ....-.+  ...+.++..  .++++++|. .+++.++.++.... .. .........+++++.|-+|++.++++.
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~~~~v~~~~~l~d~~~~i~~D  191 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLI-LVARDYQPRWVTAAEFLVDEDTIIVGD  191 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EE-EEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred             ccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEE-EEEecCCCccEEEEEEecCCcEEEEEc
Confidence            7 5544333  335555554  466888887 45577775544221 11 111122355688999987776555544

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.02  E-value=2.6  Score=50.23  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=71.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCCCCcEEEEEc--cCCCCEEEEEeCCCcEEEEECC-----
Q 004785          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHRRTPWVVRFH--PLNPTIIASGSLDHEVRLWNAS-----  180 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~~~V~sVafS--P~dg~lLaSgS~DgtVrLWDl~-----  180 (730)
                      ..-+.-|.-++.-++-+....+.|||...+...  ..| ...+.|..+.|.  | +++.+++.+..+.|.++--.     
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchhhh
Confidence            334444444444444445568999999887633  233 346779999996  5 77888888899999988432     


Q ss_pred             CC----eEEEEe---cCC-CCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004785          181 TA----ECIGSR---DFY-RPIASIAFHASGELLAVASGHKLYIWRYNM  221 (730)
Q Consensus       181 tg----~~i~~l---~h~-~~V~sVafSPdG~~LAsgSdd~I~VWDl~t  221 (730)
                      ..    ..++.+   .+. .+|.+..|-++|. |++|+++.+.|+|-..
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk~~  157 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDKWL  157 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECCCc
Confidence            11    223332   233 6899999999886 4556677888887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.01  E-value=2.9  Score=48.87  Aligned_cols=138  Identities=12%  Similarity=0.185  Sum_probs=84.1

Q ss_pred             CCeEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC---CCEEEEEeCCCcEEEEECCC
Q 004785          108 RSTIAAAFSPDGKTLASTH---GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN---PTIIASGSLDHEVRLWNAST  181 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS---~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d---g~lLaSgS~DgtVrLWDl~t  181 (730)
                      .+|..++|. ||+.++-..   ..|.+++=|   .+.+..|    ..|..+.|.|-.   .--++.......|.+|.+.-
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            468899997 777665442   133333322   2334444    348889999831   22344456677899999862


Q ss_pred             -----CeEEEE--ecCCC----CeEEEEEcCCCCEEEEEECCeE-EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004785          182 -----AECIGS--RDFYR----PIASIAFHASGELLAVASGHKL-YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (730)
Q Consensus       182 -----g~~i~~--l~h~~----~V~sVafSPdG~~LAsgSdd~I-~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~  249 (730)
                           ++.+..  .+...    --..+.|||....|++-....+ .+++++....  ....-....+.|.+.+|.+||++
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQR  169 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCE
Confidence                 222211  11111    2246789999999999886554 4455544332  11233456788999999999999


Q ss_pred             EEEEEe
Q 004785          250 LLLTAE  255 (730)
Q Consensus       250 Llatgs  255 (730)
                      |+.+.+
T Consensus       170 LVVAvG  175 (671)
T PF15390_consen  170 LVVAVG  175 (671)
T ss_pred             EEEEeC
Confidence            887654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.48  E-value=6  Score=42.11  Aligned_cols=101  Identities=13%  Similarity=-0.023  Sum_probs=69.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCe-EEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRST-IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~V-t~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      -+..++.|...+.+...+.+++.    +.. .+.| ......+++.+|..|+.|++.+..|..+..++...+.-.+...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceecc
Confidence            35668889999999999988872    111 1112 12344668999999999999999999999999887765554455


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                      -...| ....++.+...|.|.--..+..
T Consensus       141 P~i~~-g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  141 PVIAP-GDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             ceecC-CCceEEEEeccceEEEEccCCC
Confidence            66677 4455555555565555454444

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.37  E-value=5.5  Score=46.13  Aligned_cols=100  Identities=10%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE------------------eCCCcEEEEECCCC
Q 004785          121 TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG------------------SLDHEVRLWNASTA  182 (730)
Q Consensus       121 ~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg------------------S~DgtVrLWDl~tg  182 (730)
                      .++.++.+|.+...|.++|+.+.....-   ...++.+|   +.++.+                  ..++.|.-.|+.+|
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG  376 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG  376 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence            5778888999999999999988765421   11233333   222221                  23678999999999


Q ss_pred             eEEEEecCC---------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          183 ECIGSRDFY---------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       183 ~~i~~l~h~---------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      +.+......         .....-...-.+..|++++ ++.|+.+|.++++.+-
T Consensus       377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW  430 (488)
T cd00216         377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW  430 (488)
T ss_pred             cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence            988876543         1111111112456777776 5669999999998754

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=91.34  E-value=3.9  Score=38.09  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=49.6

Q ss_pred             cEEEEEcc---CCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEc
Q 004785          152 PWVVRFHP---LNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRY  219 (730)
Q Consensus       152 V~sVafSP---~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl  219 (730)
                      |+++++..   ++.+.|+.|+.|..|++|+-  .+.+..+.....|.+++-...+++.+.-.+++|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            45555543   34578999999999999975  46777777888899998887766655555777888865

>PRK13684 Ycf48-like protein; Provisional

Probab=91.25  E-value=24  Score=38.90  Aligned_cols=141  Identities=13%  Similarity=0.098  Sum_probs=80.1

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEE-EECCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKI-IDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrV-WDl~tg~~l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~  184 (730)
                      .+.+.++.+.+++.+++++ ..|.+.. +| ..++....+ ..-...++.+.+.+ ++.+++.+ ..|.+++=....|+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCc
Confidence            5578999999998777665 4455543 22 223323222 23345788999998 77776654 456665433444443


Q ss_pred             EEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          185 IGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       185 i~~l~-----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      .....     ....+.++.|.++++.++++.++.|. ...+.++.-........-....+.+.|..+++.+++
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL  319 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE
Confidence            33222     12357889999998887777666544 334443321110000122346778888877765443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.03  E-value=5.1  Score=46.39  Aligned_cols=105  Identities=12%  Similarity=0.109  Sum_probs=66.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----CCCC------CeE--EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS----PPPR------STI--AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~------~Vt--~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      +..++.+..++.|.-+|.+++++.    ....      .+.  .+... ++..++.++.|+.|+-+|.++|+.+..+...
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            456777778899999999887422    1111      010  11111 2267888889999999999999998777543


Q ss_pred             CCC-----c-EEEEEccCCCCEEEEEe---------CCCcEEEEECCCCeEEEEec
Q 004785          149 RRT-----P-WVVRFHPLNPTIIASGS---------LDHEVRLWNASTAECIGSRD  189 (730)
Q Consensus       149 ~~~-----V-~sVafSP~dg~lLaSgS---------~DgtVrLWDl~tg~~i~~l~  189 (730)
                      ...     + ....+.  + .+++.++         .++.|..+|..+|+.+..+.
T Consensus       140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            221     1 112222  2 3444443         36789999999999888764

The alignment model contains an 8-bladed beta-propeller.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.02  E-value=1.3  Score=46.15  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=67.4

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFS-PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafS-PDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      ........++.|..++.|.+|.....     .+..-...|.++--. .++.+..+++.|+.|+.|++.-++.+...-.|+
T Consensus        65 ~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   65 RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            33446678999999999999987521     111222233333222 356688899999999999999888777776676


Q ss_pred             -CCcEEEEEccCCCCEEEEE--eCCCcEEEEECCC
Q 004785          150 -RTPWVVRFHPLNPTIIASG--SLDHEVRLWNAST  181 (730)
Q Consensus       150 -~~V~sVafSP~dg~lLaSg--S~DgtVrLWDl~t  181 (730)
                       .++....... .+.++..+  |.|..++.|++..
T Consensus       145 ~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence             4444444444 45555555  6666666666653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=89.96  E-value=4.6  Score=48.18  Aligned_cols=104  Identities=12%  Similarity=0.170  Sum_probs=66.4

Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEc--CCCC-EEEEEECCeEEEEEc-----C
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFH--ASGE-LLAVASGHKLYIWRY-----N  220 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafS--PdG~-~LAsgSdd~I~VWDl-----~  220 (730)
                      .+.-+.-+. -++..+.-+...++.|||.+.+.....  +...+.|..+.|.  |||+ +|++|-.+.|.+|--     .
T Consensus        31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence            344455555 455555555566799999998876554  3457899999985  6777 566666787777642     2


Q ss_pred             CCccccC---CeEEecC-CCCeEEEEEccCCCeEEEEEe
Q 004785          221 MREETSS---PRIVLRT-RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       221 t~~~~~~---~~~l~~h-~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .......   ...+..+ ..+|.+..|.++|..++++++
T Consensus       110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN  148 (631)
T PF12234_consen  110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN  148 (631)
T ss_pred             cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence            2111000   1112233 357899999999997777776

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=89.70  E-value=15  Score=40.15  Aligned_cols=144  Identities=15%  Similarity=0.172  Sum_probs=85.9

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCe------EEEEECCC--C--eEE-----EEEecCCC--------CcEEEEEccCCCC
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHT------VKIIDCQT--G--SCL-----KVLHGHRR--------TPWVVRFHPLNPT  163 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~Dgt------VrVWDl~t--g--~~l-----~~l~gH~~--------~V~sVafSP~dg~  163 (730)
                      -+.+..+.+.+++..++.-++++.      +..+++..  +  ..+     ..++.-.+        ..-+|++.+ ++.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCC
Confidence            456778888865566666677776      55555433  1  111     11222222        234788855 888


Q ss_pred             EEEEEeCC------CcEEEEECCCCeEEEEe----------------cCCCCeEEEEEcCCCCEEEEEE------CC--e
Q 004785          164 IIASGSLD------HEVRLWNASTAECIGSR----------------DFYRPIASIAFHASGELLAVAS------GH--K  213 (730)
Q Consensus       164 lLaSgS~D------gtVrLWDl~tg~~i~~l----------------~h~~~V~sVafSPdG~~LAsgS------dd--~  213 (730)
                      ++++.-.+      ..|+.+|.. |+.+..+                ..+....+++++|||+.|+++.      ++  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88887777      888888876 5543332                2345789999999999666654      11  1


Q ss_pred             -------EEEEEcCCCc---cccCCeEEec------CCCCeEEEEEccCCCeEEE
Q 004785          214 -------LYIWRYNMRE---ETSSPRIVLR------TRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       214 -------I~VWDl~t~~---~~~~~~~l~~------h~~~V~sVaFSPdG~~Lla  252 (730)
                             ++|+.+....   ..........      ....|..+.+-++++.++.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   4555554332   1111111111      3567889999999996654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=89.27  E-value=0.86  Score=35.80  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=29.8

Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~  184 (730)
                      ...|..++|+| ..++++.+..||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            35689999999 9999999999999999999 5554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.27  E-value=0.64  Score=55.63  Aligned_cols=91  Identities=13%  Similarity=0.124  Sum_probs=72.3

Q ss_pred             CCCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEE
Q 004785           89 EAESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTII  165 (730)
Q Consensus        89 ~DgsIrlWd~~t~~L---~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lL  165 (730)
                      ..|+|.+|-- ++.-   ..-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|++ +|+.+
T Consensus        39 r~GSVtIfad-tGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l  116 (1416)
T KOG3617|consen   39 RGGSVTIFAD-TGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVL  116 (1416)
T ss_pred             CCceEEEEec-CCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeE
Confidence            4566776643 2311   11223367899999988999998899999999888777667778999999999999 99999


Q ss_pred             EEEeCCCcEEEEECCC
Q 004785          166 ASGSLDHEVRLWNAST  181 (730)
Q Consensus       166 aSgS~DgtVrLWDl~t  181 (730)
                      +++..-|.|.+|....
T Consensus       117 ~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  117 MTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEcCCCceeEEEEeee
Confidence            9999999999998763

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.24  E-value=2.2  Score=44.23  Aligned_cols=63  Identities=13%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEe---------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785          161 NPTIIASGSLDHEVRLWNASTAECIGSR---------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (730)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l---------------~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~  223 (730)
                      .+++++....+|.+++||+.+++.+..-               .....|..+.++.+|.-|++-+++..+.||.+.+.
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~   98 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC   98 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence            6788999999999999999998875432               23457888899999998888888889999887664

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=89.09  E-value=12  Score=41.65  Aligned_cols=101  Identities=9%  Similarity=0.038  Sum_probs=57.2

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----CeEE---EEEec----CCCCcEEEEEccCCCCEEEEEeCC---
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCL---KVLHG----HRRTPWVVRFHPLNPTIIASGSLD---  171 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l---~~l~g----H~~~V~sVafSP~dg~lLaSgS~D---  171 (730)
                      ....+.++|.++| + +.+..+...++.|...     ++..   ..+..    +......++|.| ++.+.++-+..   
T Consensus        71 l~~p~Gi~~~~~G-l-yV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~  147 (367)
T TIGR02604        71 LSMVTGLAVAVGG-V-YVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLAS  147 (367)
T ss_pred             CCCccceeEecCC-E-EEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCc
Confidence            3346789999888 4 4444443333445432     1211   22322    234477899999 78877764421   


Q ss_pred             ----------------CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785          172 ----------------HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       172 ----------------gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS  210 (730)
                                      +.|..+|..+++.......-.....++|+|+|+++++-.
T Consensus       148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                            345666665544332222234457899999998876544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=88.85  E-value=29  Score=38.50  Aligned_cols=146  Identities=18%  Similarity=0.146  Sum_probs=86.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCC-CC--------CCCCCCCe-EEEEECCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecC
Q 004785           81 RRGLASWVEAESLHHLRPKY-CP--------LSPPPRST-IAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGH  148 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t-~~--------L~gH~~~V-t~lafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l~gH  148 (730)
                      ...+.+.+.||++....+.. ++        +..-...+ ..-+++.++..++--+.+|.|+--|+.....  ...+.--
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence            34566777788777766652 21        21112222 2334444555566677889999888865532  2222211


Q ss_pred             C----------CCcEEEEEccCCCCEEEEE--eCCC-------cEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEE
Q 004785          149 R----------RTPWVVRFHPLNPTIIASG--SLDH-------EVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAV  208 (730)
Q Consensus       149 ~----------~~V~sVafSP~dg~lLaSg--S~Dg-------tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAs  208 (730)
                      +          +.-.-+++++..+.+++.-  +.++       .|.++|+.+++.+..+.....+.+|..+.|.+ +|+.
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence            0          1233477877333433331  1121       48888999999999988777888999999887 6665


Q ss_pred             EE--CCeEEEEEcCCCcccc
Q 004785          209 AS--GHKLYIWRYNMREETS  226 (730)
Q Consensus       209 gS--dd~I~VWDl~t~~~~~  226 (730)
                      .+  ++.|.+||..+++.+.
T Consensus       307 ~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  307 LSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EETTTTEEEEEETTT--EEE
T ss_pred             EcCCCCeEEEEeCcCCcEEe
Confidence            55  3459999999998654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=88.51  E-value=9  Score=43.36  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---------CCCCeEEEEEcC-----CC---C
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---------FYRPIASIAFHA-----SG---E  204 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---------h~~~V~sVafSP-----dG---~  204 (730)
                      ...+....++|++++.+  +-.+++.|..+|.+.|.|++....+....         ....+.++.|..     |+   -
T Consensus        79 ~~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   79 LTLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             hhheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            34445568899999997  57899999999999999998877766521         223677888873     33   3


Q ss_pred             EEEEEEC-CeEEEEEcC
Q 004785          205 LLAVASG-HKLYIWRYN  220 (730)
Q Consensus       205 ~LAsgSd-d~I~VWDl~  220 (730)
                      .|++|++ +.+.+|.+-
T Consensus       157 ~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEETTSEEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEe
Confidence            6778875 448888764

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=88.35  E-value=65  Score=38.64  Aligned_cols=144  Identities=19%  Similarity=0.190  Sum_probs=82.4

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCC----eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE------eCC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDH----TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG------SLD  171 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~Dg----tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg------S~D  171 (730)
                      ....+...+..+.|+|||+.++..+.++    .+++.+.. +    .+..+...+....|+| .++.++..      ..|
T Consensus        54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~~~  127 (620)
T COG1506          54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSP-DGDRIAFLTAEGASKRD  127 (620)
T ss_pred             cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCC-CCCeEEEEecccccccC
Confidence            3455677788999999999999887432    24444444 3    3344556677889999 55554441      112


Q ss_pred             Cc-------EEEEECCCC-eEE------------EEecCCCCeEEEEEcCCCCEEEEEE--CC--e----EEEEEcCCCc
Q 004785          172 HE-------VRLWNASTA-ECI------------GSRDFYRPIASIAFHASGELLAVAS--GH--K----LYIWRYNMRE  223 (730)
Q Consensus       172 gt-------VrLWDl~tg-~~i------------~~l~h~~~V~sVafSPdG~~LAsgS--dd--~----I~VWDl~t~~  223 (730)
                      +.       +.+|....+ +..            ........+....++++++.++...  ++  .    ..++...++.
T Consensus       128 ~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (620)
T COG1506         128 GGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE  207 (620)
T ss_pred             CceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc
Confidence            22       334443333 211            1112334566677777777776665  21  1    3344332222


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                          ..........+..+.|.++|+.++..+.
T Consensus       208 ----~~~~~~~~~~~~~~~~~~~gk~~~~~~~  235 (620)
T COG1506         208 ----LESLTPGEGSISKLAFDADGKSIALLGT  235 (620)
T ss_pred             ----eEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence                2245555667899999999996665443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.29  E-value=17  Score=42.67  Aligned_cols=55  Identities=13%  Similarity=0.139  Sum_probs=36.6

Q ss_pred             CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       172 gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      +.|.-||+.+|+.+.......+...-...-.|.+++.++ ++.++.+|.++++.+-
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw  496 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW  496 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence            458888999998888766443322111222455666666 5569999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.20  E-value=16  Score=42.92  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=48.4

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEE--EEEcCCCC
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE  204 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~s--VafSPdG~  204 (730)
                      +.|.-+|+.+|+.+-..+......... ..- .+.+++.++.||.++.+|.++|+.+..+.....+.+  +.|.-+|+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~  516 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK  516 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence            457778888888776665322212222 111 456777888899999999999999988765544332  33445666

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.07  E-value=31  Score=39.89  Aligned_cols=105  Identities=10%  Similarity=0.124  Sum_probs=59.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE--EEEE----e-cCCCCcEEEEEccCC---C---CEEEEEeC----
Q 004785          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL----H-GHRRTPWVVRFHPLN---P---TIIASGSL----  170 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l----~-gH~~~V~sVafSP~d---g---~lLaSgS~----  170 (730)
                      ..-..|+|.|||++|++--..|.|++++-.++..  +..+    . .-.+....|+++|+-   .   .++++-+.    
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            3467899999998877765569999998655432  2111    1 124557899999831   1   23333211    


Q ss_pred             -----CCcEEEEECCCC-------eEEEE-ec--CCCCeEEEEEcCCCCEEEEEECC
Q 004785          171 -----DHEVRLWNASTA-------ECIGS-RD--FYRPIASIAFHASGELLAVASGH  212 (730)
Q Consensus       171 -----DgtVrLWDl~tg-------~~i~~-l~--h~~~V~sVafSPdG~~LAsgSdd  212 (730)
                           ...|.-|.+...       +.+.. +.  ..+.-..+.|.|||++.++.+|.
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                 233555554321       11111 11  11234578899999866655543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.79  E-value=10  Score=40.01  Aligned_cols=100  Identities=17%  Similarity=0.161  Sum_probs=69.3

Q ss_pred             eEEEEECCCCCEEEEE-eCCCeEEEEE--CCCCe-----EEEEEec----CCCCcEEEEEccCCCCEEEEEeCCCcEEEE
Q 004785          110 TIAAAFSPDGKTLAST-HGDHTVKIID--CQTGS-----CLKVLHG----HRRTPWVVRFHPLNPTIIASGSLDHEVRLW  177 (730)
Q Consensus       110 Vt~lafSPDG~~LaSg-S~DgtVrVWD--l~tg~-----~l~~l~g----H~~~V~sVafSP~dg~lLaSgS~DgtVrLW  177 (730)
                      -+.++|+.|.+.++.. +.+.+|.-||  +.+|.     .+..++.    ..-....+++.. ++++++++-..++|...
T Consensus       160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKV  238 (310)
T ss_pred             CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEE
Confidence            3578999887776554 5688898888  66663     2333332    111233466666 78899999999999999


Q ss_pred             ECCCCeEEEEec-CCCCeEEEEEcC-CCCEEEEEE
Q 004785          178 NASTAECIGSRD-FYRPIASIAFHA-SGELLAVAS  210 (730)
Q Consensus       178 Dl~tg~~i~~l~-h~~~V~sVafSP-dG~~LAsgS  210 (730)
                      |..+|+.+..+. ....|++++|-- +-..|++..
T Consensus       239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence            999999988876 356899999953 233555444

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.75  E-value=1.7  Score=53.65  Aligned_cols=100  Identities=13%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCe-EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeE
Q 004785          118 DGKTLASTHGDHTVKIIDCQTGS-CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA  195 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~  195 (730)
                      .+..++.|+..|.|...|....- ....=+.-.++|++++|+. ++.+++.|-.+|-|.+||...++..+.+. +..+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            46678999998999888875431 1111123457899999998 99999999999999999999988887754 444433


Q ss_pred             ---EEEEcCCCCEEEEEECCeEEEEEc
Q 004785          196 ---SIAFHASGELLAVASGHKLYIWRY  219 (730)
Q Consensus       196 ---sVafSPdG~~LAsgSdd~I~VWDl  219 (730)
                         -+.+..++..+.++..++. +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs-f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS-FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc-eEEE
Confidence               3444555555666553332 5544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=87.70  E-value=1.6  Score=45.43  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=58.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCC-eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CC-CCeE
Q 004785          119 GKTLASTHGDHTVKIIDCQTG-SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FY-RPIA  195 (730)
Q Consensus       119 G~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~-~~V~  195 (730)
                      +..++.|+.+|.|++|+..-. .....+..-...|.++--.-+++.+..+++.|+.|+.|++.-++.+.... |. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            467889999999999987521 11111111112233222222245588899999999999998877766654 33 3333


Q ss_pred             EEEEcCCCCEEEEE--E-CCeEEEEEcCC
Q 004785          196 SIAFHASGELLAVA--S-GHKLYIWRYNM  221 (730)
Q Consensus       196 sVafSPdG~~LAsg--S-dd~I~VWDl~t  221 (730)
                      ....+-.+++|+.+  | +..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            33334444444444  2 22255555543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=87.32  E-value=12  Score=46.08  Aligned_cols=108  Identities=14%  Similarity=0.038  Sum_probs=71.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC--------cEEEEEcc---------------CCCCEEEEEeCCCcEE
Q 004785          119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--------PWVVRFHP---------------LNPTIIASGSLDHEVR  175 (730)
Q Consensus       119 G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~--------V~sVafSP---------------~dg~lLaSgS~DgtVr  175 (730)
                      +..|+.++.++.|.-.|.++|+.+-.+.-....        ...+++..               .....++.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            567888888899999999999988877533211        12233321               0234777888999999


Q ss_pred             EEECCCCeEEEEecCCCCeE-------------EEEEcC--CCCEEEEEE-----------CCeEEEEEcCCCcccc
Q 004785          176 LWNASTAECIGSRDFYRPIA-------------SIAFHA--SGELLAVAS-----------GHKLYIWRYNMREETS  226 (730)
Q Consensus       176 LWDl~tg~~i~~l~h~~~V~-------------sVafSP--dG~~LAsgS-----------dd~I~VWDl~t~~~~~  226 (730)
                      -.|.++|+.+..+..++.|.             .+.-.|  .+..+++|+           ++.|+-+|.++++..-
T Consensus       274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence            99999999988776544331             111222  134555553           2349999999998643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.51  E-value=10  Score=43.27  Aligned_cols=147  Identities=14%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             CeEEEEECCCCCEEEEEeC--------------------CCeEEEEECCCCeEEEEEecCC--CCcEEEEEccC-CCC-E
Q 004785          109 STIAAAFSPDGKTLASTHG--------------------DHTVKIIDCQTGSCLKVLHGHR--RTPWVVRFHPL-NPT-I  164 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~--------------------DgtVrVWDl~tg~~l~~l~gH~--~~V~sVafSP~-dg~-l  164 (730)
                      .-+..-|.|..+.++|...                    ..++.+||+.+.+.++++.--.  ..+..|+|..+ +.. =
T Consensus       182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g  261 (461)
T PF05694_consen  182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG  261 (461)
T ss_dssp             ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred             CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence            4567777887777777643                    4689999999999999886332  23556777541 233 3


Q ss_pred             EEEEeCCCcEEEEEC-CCCeEE----EEecC------------------CCCeEEEEEcCCCCEEEEEE--CCeEEEEEc
Q 004785          165 IASGSLDHEVRLWNA-STAECI----GSRDF------------------YRPIASIAFHASGELLAVAS--GHKLYIWRY  219 (730)
Q Consensus       165 LaSgS~DgtVrLWDl-~tg~~i----~~l~h------------------~~~V~sVafSPdG~~LAsgS--dd~I~VWDl  219 (730)
                      ++.+-...+|.+|-- ..++-.    ..+..                  ..-|+.|..|.|.++|++++  .+.|+-||+
T Consensus       262 Fvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  262 FVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             EEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             EEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence            344444555655533 344321    11111                  23478999999999999999  456999999


Q ss_pred             CCCccccCC-eEEec---------------CCCCeEEEEEccCCCeEEEEEe
Q 004785          220 NMREETSSP-RIVLR---------------TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       220 ~t~~~~~~~-~~l~~---------------h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ......... ....+               -.....-|..|-||+++..|.+
T Consensus       342 SDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  342 SDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            876432200 01111               1223477889999999999887

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.39  E-value=45  Score=42.12  Aligned_cols=122  Identities=14%  Similarity=0.125  Sum_probs=80.1

Q ss_pred             EEeCCCeEEEEeCCCC---------CCC------CCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeE-EEEEecC
Q 004785           86 SWVEAESLHHLRPKYC---------PLS------PPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSC-LKVLHGH  148 (730)
Q Consensus        86 Sgs~DgsIrlWd~~t~---------~L~------gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~-l~~l~gH  148 (730)
                      .-.++..|..||++.-         .|.      .......++.|+|.- ...+....|+.|++..+..-.. +..+ .-
T Consensus       119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~  197 (1405)
T KOG3630|consen  119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PV  197 (1405)
T ss_pred             EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cc
Confidence            3344557888998631         122      223446788999843 3456667788888876643221 2222 23


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----CCCCeEEEEEcCCCCEEEEEE
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----h~~~V~sVafSPdG~~LAsgS  210 (730)
                      ...+++++|+| .+..++.|-..|++.-|-.. .+....+.     ....|.+|+|-..-.+|++-+
T Consensus       198 t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  198 TNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            45688999999 99999999999998888653 33333321     357899999988877777654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=86.39  E-value=27  Score=39.68  Aligned_cols=79  Identities=14%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-CCCcEEEEEcc
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-RRTPWVVRFHP  159 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-~~~V~sVafSP  159 (730)
                      +...+....++.+.+.+.....-....+.+..|++||+|++||.-..+|.+.|.+..-.+.+..+... ......+.|.-
T Consensus       190 ~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG  269 (410)
T PF04841_consen  190 RVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG  269 (410)
T ss_pred             cceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence            34444555666776555432211223468999999999999999999999999987656666555443 34567788865

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.97  E-value=9.6  Score=43.96  Aligned_cols=136  Identities=12%  Similarity=0.114  Sum_probs=88.6

Q ss_pred             ECCCCCEEEE-EeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCC------CCEEEEEeCCCcEEEEECCC-CeEEE
Q 004785          115 FSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLN------PTIIASGSLDHEVRLWNAST-AECIG  186 (730)
Q Consensus       115 fSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~d------g~lLaSgS~DgtVrLWDl~t-g~~i~  186 (730)
                      ...|..+|+. |.....++-.|++.|+.+..+..|...  .|.|.|..      ...-+.|-.|..|.-.|.+- |..+.
T Consensus       475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            3345555554 444567888899999999999888764  57888831      12334466676777777764 44444


Q ss_pred             EecCCCCeEEEEEcC----CCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          187 SRDFYRPIASIAFHA----SGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       187 ~l~h~~~V~sVafSP----dG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .......+..-.|+.    ..-++|+++.++ |++||--....   ...+.+-...|..+..+.+|++++++|.
T Consensus       553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             eeeehhccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEeec
Confidence            444444444334443    234788888655 99999533221   2245556778999999999999999997

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.41  E-value=5  Score=45.68  Aligned_cols=85  Identities=15%  Similarity=0.242  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE-EEEccCCC-----------------CEEE
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV-VRFHPLNP-----------------TIIA  166 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s-VafSP~dg-----------------~lLa  166 (730)
                      .....+.++..+|++++.|+..+-|.|.|+|+.++..++.+||.++.=.. +.......                 -+++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            44566889999999998888777799999999999999999887653211 11111011                 1334


Q ss_pred             EEeCCCcEEEEECCCCeEEEEec
Q 004785          167 SGSLDHEVRLWNASTAECIGSRD  189 (730)
Q Consensus       167 SgS~DgtVrLWDl~tg~~i~~l~  189 (730)
                      -+-.-|.|-||++++|..+..+.
T Consensus       385 yaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  385 YAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             EeccCCeEEEEecCCCCEEEEEE
Confidence            46677888888888887766543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.36  E-value=5.1  Score=44.28  Aligned_cols=83  Identities=13%  Similarity=0.056  Sum_probs=54.5

Q ss_pred             CeEEEEECCCCCEEEEEeC--------C--CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCcEEEE
Q 004785          109 STIAAAFSPDGKTLASTHG--------D--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLW  177 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~--------D--gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~DgtVrLW  177 (730)
                      .-.-+++++..++|++.-.        |  ..|.++|+.+++.+..+..- ..+.+|+++.++.-+|+..+ .++.+.+|
T Consensus       239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~  317 (342)
T PF06433_consen  239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVY  317 (342)
T ss_dssp             SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred             ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence            3445777765555554321        2  34888899999999988732 35779999985555666554 58999999


Q ss_pred             ECCCCeEEEEecCCC
Q 004785          178 NASTAECIGSRDFYR  192 (730)
Q Consensus       178 Dl~tg~~i~~l~h~~  192 (730)
                      |..+|+.+...+.-+
T Consensus       318 D~~tGk~~~~~~~lG  332 (342)
T PF06433_consen  318 DAATGKLVRSIEQLG  332 (342)
T ss_dssp             ETTT--EEEEE---S
T ss_pred             eCcCCcEEeehhccC
Confidence            999999998876433

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.32  E-value=1e+02  Score=37.95  Aligned_cols=210  Identities=16%  Similarity=0.155  Sum_probs=118.4

Q ss_pred             CCCCCeEEEEEC---C--C--CCEEEEEeCCCeEEEEE------CCC---------CeEEEEEec---CCCCcEEEEEcc
Q 004785          105 PPPRSTIAAAFS---P--D--GKTLASTHGDHTVKIID------CQT---------GSCLKVLHG---HRRTPWVVRFHP  159 (730)
Q Consensus       105 gH~~~Vt~lafS---P--D--G~~LaSgS~DgtVrVWD------l~t---------g~~l~~l~g---H~~~V~sVafSP  159 (730)
                      .-..+|..|+|.   .  +  .++|++= ....+.|+.      +..         ..++..+..   -..+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            345678899998   2  2  2355443 445666666      111         123334431   123566799999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCe------EEEEecCC----------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785          160 LNPTIIASGSLDHEVRLWNASTAE------CIGSRDFY----------RPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (730)
Q Consensus       160 ~dg~lLaSgS~DgtVrLWDl~tg~------~i~~l~h~----------~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~  223 (730)
                      .+...||.....|...|||+..+.      ........          +.-..|.|.++-+.|++.+..++.++|+++..
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~  235 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW  235 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence            888899999999999999992211      11111111          23347889999899999988889999998876


Q ss_pred             cccCCeEEecCCCCeEEEEEccC--CCeEEEEEe--eC-CccCCC-cceeEeccCCcccCCCCeEEEecCCCCCCCCccc
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE--VN-DLDSSE-SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAE  297 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPd--G~~Llatgs--vw-dl~s~~-~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~  297 (730)
                      .... .........|..+.-+++  +..++.|..  +| ++.... ....+..-..+.....+.+.+.....        
T Consensus       236 ~~~~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~~--------  306 (765)
T PF10214_consen  236 QTEY-LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQKV--------  306 (765)
T ss_pred             ccch-hccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEEEc--------
Confidence            5221 223334567888988887  333444443  44 222211 22223222222211122222221000        


Q ss_pred             ccCCCCCCceeeeEecCCCEEEEEecCCCCC
Q 004785          298 EVPLITPPFLRPSFVRDDERISLQHTEHDSG  328 (730)
Q Consensus       298 ~~~~~slpil~p~FSpDg~rI~~~~~~~dsg  328 (730)
                          ....+...-||+....|.++......+
T Consensus       307 ----~~~~~~~~lyS~~~~~v~v~~f~~~~~  333 (765)
T PF10214_consen  307 ----GDTDFVVFLYSRLNPLVYVYFFSFSSG  333 (765)
T ss_pred             ----CCCEEEEEEEcCCCCcEEEEEEecCCC
Confidence                012233667788888887776655443

These proteins are found in fungi.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=84.33  E-value=18  Score=40.89  Aligned_cols=176  Identities=13%  Similarity=0.036  Sum_probs=90.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC------CC------CCCCCeEEEEECC-----CC---CEEEEEeCCCeEEEEECC-
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP------LS------PPPRSTIAAAFSP-----DG---KTLASTHGDHTVKIIDCQ-  137 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~------L~------gH~~~Vt~lafSP-----DG---~~LaSgS~DgtVrVWDl~-  137 (730)
                      .+-..++.+.++|.+.+.|.+...      +.      .....|+++.|+-     |+   -.|+.|.+.|.+.+|.+. 
T Consensus        95 S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp  174 (395)
T PF08596_consen   95 SDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILP  174 (395)
T ss_dssp             -BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred             CCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEec
Confidence            355688899999999999996431      11      2345688999973     33   368899999999999874 


Q ss_pred             -C-CeEE----EEEecCCCCcEEEE-EccCCC-------------------CEEEEEeCCCcEEEEECCCCeEEEEecCC
Q 004785          138 -T-GSCL----KVLHGHRRTPWVVR-FHPLNP-------------------TIIASGSLDHEVRLWNASTAECIGSRDFY  191 (730)
Q Consensus       138 -t-g~~l----~~l~gH~~~V~sVa-fSP~dg-------------------~lLaSgS~DgtVrLWDl~tg~~i~~l~h~  191 (730)
                       . +...    .....+.++|..|. |+.+++                   .-++....+..++++...+.+...+....
T Consensus       175 ~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~  254 (395)
T PF08596_consen  175 SSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDD  254 (395)
T ss_dssp             -GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS
T ss_pred             CCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeecc
Confidence             1 2222    12224566666655 432111                   22344455678999999988776654422


Q ss_pred             -CCeEEEEEc-----CCCCEEEEEE-CCeEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEEEE
Q 004785          192 -RPIASIAFH-----ASGELLAVAS-GHKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       192 -~~V~sVafS-----PdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l-~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                       -....+.+-     ..+..|++-. ++.|++|.+..-+++...... ......+....|+++|..++.++
T Consensus       255 ~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g  325 (395)
T PF08596_consen  255 PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTG  325 (395)
T ss_dssp             -EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred             ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeC
Confidence             223334452     2455666655 556999999887664411110 01122345667899998665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=82.95  E-value=13  Score=40.13  Aligned_cols=125  Identities=14%  Similarity=0.094  Sum_probs=75.9

Q ss_pred             CeEEEEeCCCC-----CC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEEec-CCCCcEEEEEc
Q 004785           91 ESLHHLRPKYC-----PL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHG-HRRTPWVVRFH  158 (730)
Q Consensus        91 gsIrlWd~~t~-----~L-----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~g-H~~~V~sVafS  158 (730)
                      |.|.++++...     ++     ....+.|++++-- +|+ |+.+. ...|.+|++...+ .+..-.- ..-.+.++...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence            66777776652     11     2346789888876 444 55444 4789999998877 4332221 22245555554


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCC-CeEEEEe---cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004785          159 PLNPTIIASGSLDHEVRLWNAST-AECIGSR---DFYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (730)
Q Consensus       159 P~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l---~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t  221 (730)
                         +++++.|.....|.++.++. ...+..+   .....+.++.|-++++.++++.. +.+.++.+..
T Consensus       139 ---~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 ---KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ---TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ---ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence               56888898888888775443 3322222   24556888999877777776664 4588888763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.72  E-value=15  Score=41.99  Aligned_cols=105  Identities=14%  Similarity=0.160  Sum_probs=77.2

Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNM  221 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t  221 (730)
                      ..+++|.+|.|++ |.+.++.--.|++|.+++....+......     ....|....|+.+ .-+|..++.++.+|....
T Consensus        64 ~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEch
Confidence            3567899999999 99999999999999999985444333322     2235888899865 677878887888887654


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .+.  ..+....+.-.|.-..|.++.+.++.+..
T Consensus       142 ekr--slRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  142 EKR--SLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhh--hhhhhhhcccCccEEEEccccceEeeecc
Confidence            433  23456677888999999999887665544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=82.60  E-value=1.3e+02  Score=37.65  Aligned_cols=146  Identities=14%  Similarity=0.193  Sum_probs=84.4

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccC--CCC---EEEEEeCCCcEEEEEC-
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPL--NPT---IIASGSLDHEVRLWNA-  179 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~--dg~---lLaSgS~DgtVrLWDl-  179 (730)
                      ++.++....+-+...++.++.++.+...++..+...... +.-...|.|+.++|.  +.+   +++.|..+..+.+.-. 
T Consensus       487 p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~  566 (1096)
T KOG1897|consen  487 PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL  566 (1096)
T ss_pred             CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence            445666666667778888888888888887766522222 223467899999974  333   7888887766554433 


Q ss_pred             CCCeEEEEe--c---CCCCeEEEEEcCCCCEEEEEECCe---EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          180 STAECIGSR--D---FYRPIASIAFHASGELLAVASGHK---LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       180 ~tg~~i~~l--~---h~~~V~sVafSPdG~~LAsgSdd~---I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      .+...+...  .   -...|--..|--|+.+|.++.+++   -++.|..++...... ...-...++.--.|+..++.-+
T Consensus       567 pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K-k~~lGt~P~~Lr~f~sk~~t~v  645 (1096)
T KOG1897|consen  567 PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK-KVTLGTQPISLRTFSSKSRTAV  645 (1096)
T ss_pred             CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc-ccccCCCCcEEEEEeeCCceEE
Confidence            333333222  1   234556666777788888887555   356666666543311 1122234454445655554433


Q ss_pred             EE
Q 004785          252 LT  253 (730)
Q Consensus       252 at  253 (730)
                      .+
T Consensus       646 fa  647 (1096)
T KOG1897|consen  646 FA  647 (1096)
T ss_pred             EE
Confidence            33

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.75  E-value=22  Score=34.30  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=68.0

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCC--------eEEEEEecCCCCcEEEEEcc---C-CCCEEEEEeCCCcEEEEECC
Q 004785          113 AAFSPDGKTLASTHGDHTVKIIDCQTG--------SCLKVLHGHRRTPWVVRFHP---L-NPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg--------~~l~~l~gH~~~V~sVafSP---~-dg~lLaSgS~DgtVrLWDl~  180 (730)
                      -.|......|+.++.-++|.|++....        ..+..|. -...|++++-.+   . +.+.|+.|+ ...+..||+.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            344444445666667777777765432        1223332 334566665433   2 345666655 4579999999


Q ss_pred             CCeEEEEecCCCCeEEEEEcC----CCCEEEEEECCeEEEEEcCCCc
Q 004785          181 TAECIGSRDFYRPIASIAFHA----SGELLAVASGHKLYIWRYNMRE  223 (730)
Q Consensus       181 tg~~i~~l~h~~~V~sVafSP----dG~~LAsgSdd~I~VWDl~t~~  223 (730)
                      ...-+...+..+.|+++.+-.    +..++++|++..|.-||....+
T Consensus        82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e  128 (136)
T PF14781_consen   82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE  128 (136)
T ss_pred             cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence            888777777778888887743    3457777777778888765543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=81.60  E-value=42  Score=36.71  Aligned_cols=136  Identities=14%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEE-CCCCeEEEE--Ee--cC
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIID-CQTGSCLKV--LH--GH  148 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD-l~tg~~l~~--l~--gH  148 (730)
                      .+++..++.+........||.-.....    .-...|..|.|+||+.+.+.+ ..+.|+.=+ ....+....  ..  .-
T Consensus       153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~  231 (302)
T PF14870_consen  153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTN  231 (302)
T ss_dssp             -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred             CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccC
Confidence            345555555555555678876433222    235679999999998776655 888888877 222222211  11  11


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASGHKLYIW  217 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~~V~sVafSPdG~~LAsgSdd~I~VW  217 (730)
                      .-.+..++|.+ +..+.++|+.. + .+.....|+.-+..    ......+.|.|..+.+-++.|.++.|--|
T Consensus       232 ~~~~ld~a~~~-~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  232 GYGILDLAYRP-PNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -S-EEEEEESS-SS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             ceeeEEEEecC-CCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            22367899998 67777765544 3 33445556554443    23567889999887788888877764433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.18  E-value=55  Score=37.17  Aligned_cols=138  Identities=12%  Similarity=0.050  Sum_probs=77.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-EEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----
Q 004785          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL-KVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----  183 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l-~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----  183 (730)
                      ...+..++||.+++.+..-..++-||  .|... ..+ ......+..+.|.+ ++.+++.+ .+|.+. |....++    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccc
Confidence            44566778887777765443333444  23321 111 22345688899988 77777655 555543 4444443    


Q ss_pred             -EEEEecC---CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          184 -CIGSRDF---YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       184 -~i~~l~h---~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                       .......   ...+.++.|.+++..+++|..+.+.+.. ..++.-........-...++.+.|.++++.++++
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G  388 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG  388 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence             2222222   2358899999999988888776655543 3333211000012234578899998887755543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.17  E-value=49  Score=31.96  Aligned_cols=85  Identities=12%  Similarity=0.122  Sum_probs=57.4

Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCC--------eEEEEecCCCCeEEEEEcC-----CCCEEEEEECCeEEEEEcCC
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTA--------ECIGSRDFYRPIASIAFHA-----SGELLAVASGHKLYIWRYNM  221 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg--------~~i~~l~h~~~V~sVafSP-----dG~~LAsgSdd~I~VWDl~t  221 (730)
                      -+|.. ..--|+.++.-+.|.|++....        ..+..+..+..|++++-.+     +...|+.|+...|..||+..
T Consensus         4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~   82 (136)
T PF14781_consen    4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN   82 (136)
T ss_pred             EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence            34544 3345666677788888876532        3456677788888886433     34589999999999999987


Q ss_pred             CccccCCeEEecCCCCeEEEEEc
Q 004785          222 REETSSPRIVLRTRRSLRAVHFH  244 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFS  244 (730)
                      ...+-    ...-.+.|+++.+-
T Consensus        83 N~d~F----yke~~DGvn~i~~g  101 (136)
T PF14781_consen   83 NSDLF----YKEVPDGVNAIVIG  101 (136)
T ss_pred             Cchhh----hhhCccceeEEEEE
Confidence            75432    34445677777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	730
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-11
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-11
2h9l_A	329	Wdr5delta23 Length = 329		3e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-11
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-10
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		6e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-06
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-06
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		4e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		5e-06
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		5e-06
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		5e-06
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		6e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-06
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		3e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		9e-04

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
           A  F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +L
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 236
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           D+ ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
           A  F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +L
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 234
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           D+ ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 206 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 264
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKE 287

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW-VVRFHPLNPTIIASGSL 170
           A  F+ DG  + S+  D   +I D  +G CLK L      P   V+F P N   I + +L
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATL 218
Query: 171 DHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
           D+ ++LW+ S  +C+ +      + Y   A+ +      +++ +  + +YIW    +E
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAA--------AFSPDGKTLASTHGDHTVKIIDCQT 138
           W+ A S   L   +         TI+         A+S D   L S   D T+KI D  +
Sbjct: 40  WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 99
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-PIASI 197
           G CLK L GH    +   F+P    +I SGS D  VR+W+  T +C+ +   +  P++++
Sbjct: 100 GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 158
Query: 198 AFHASGELLAVAS 210
            F+  G L+  +S
Sbjct: 159 HFNRDGSLIVSSS 171

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 190 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 248
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKE 271

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 194 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 252
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKE 275

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 195 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 253
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKE 276

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
            S+ E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
           K L      P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
            +      +++ +  + +YIW    +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCL 142
            S+ E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CL
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 187
Query: 143 KVLHGHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIAS 196
           K L      P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+
Sbjct: 188 KTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 246
Query: 197 IAFHASGELLAVASGHKLYIWRYNMRE 223
            +      +++ +  + +YIW    +E
Sbjct: 247 FSVTGGKWIVSGSEDNLVYIWNLQTKE 273

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 188 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 246
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKE 269

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH 172
            A+S D   L S   D T+KI D  +G CLK L GH    +   F+P    +I SGS D 
Sbjct: 74  VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDE 132
Query: 173 EVRLWNASTAECIGSRDFYR-PIASIAFHASGELLAVASGHKL-YIWRYNMREETSSPRI 230
            VR+W+  T  C+ +   +  P++++ F+  G L+  +S   L  IW      +T+S + 
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW------DTASGQ- 185
Query: 231 VLRTRRS-----LRAVHFHPHAAPLLLTAEVNDL 259
            L+T        +  V F P+   +L     NDL
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL 219

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 185 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 243
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKE 266

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 189 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKE 270

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 89  EAESLHHLRPKYCPLSPPPRSTIAAA--FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH 146
           E+  +  ++   C  + P  S   +A  F+ DG  + S+  D   +I D  +G CLK L 
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 147 GHRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFH 200
                P   V+F P N   I + +LD+ ++LW+ S  +C+ +      + Y   A+ +  
Sbjct: 192 DDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 250
Query: 201 ASGELLAVASGHKLYIWRYNMRE 223
               +++ +  + +YIW    +E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP 162
           L+    S    AFSPDG+T+AS   D TVK+ + + G  L+ L GH  + W V F P + 
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQ 439
Query: 163 TIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNM 221
           T IAS S D  V+LWN +             +  +AF   G+ +A AS  K + +W  N 
Sbjct: 440 T-IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498
Query: 222 REETSSPRIVLRT----RRSLRAVHFHPHAAPL 250
           +        +L+T      S+R V F P    +
Sbjct: 499 Q--------LLQTLTGHSSSVRGVAFSPDGQTI 523

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVL-HGHRRTPWVVRFHPLNPTIIASGSL 170
           A++P G  LAS  GD  ++I   +  S  C  VL  GH+RT   V + P     +AS S 
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASF 81
Query: 171 DHEVRLW--NASTAECIGSRDFYR-PIASIAFHASGELLAVASGHK-LYIWRYNMREETS 226
           D    +W  N    EC+ + + +   + S+A+  SG LLA  S  K +++W  +  +E  
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVND 258
              ++    + ++ V +HP +  LL +A  +D
Sbjct: 142 CVSVLNSHTQDVKHVVWHP-SQELLASASYDD 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP-LNPTIIASGSL 170
           + +  P+G  + S   D T+K+ + QTG C+K   GHR   WV    P  + T+IAS S 
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSN 254
Query: 171 DHEVRLWNASTAEC 184
           D  VR+W  +T EC
Sbjct: 255 DQTVRVWVVATKEC 268

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 84  LASWVEAESLHHLRPKYCPLSPPPRSTI---AAAFSPDGKTLASTHGDHTVKIIDCQTGS 140
           L + +  +S  +  P+    S  P S +   +  FSPDGK LA+   D  ++I D +   
Sbjct: 97  LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156
Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200
            + +L GH +  + + + P    ++ SGS D  VR+W+  T +C  +      + ++A  
Sbjct: 157 IVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 215
Query: 201 -ASGELLAVAS 210
              G+ +A  S
Sbjct: 216 PGDGKYIAAGS 226

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAEC 184
           WN+ST + 
Sbjct: 255 WNSSTYKV 262

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
           PD   + +   D T+KI D QT SC+  L GH        FHP  P II SGS D  +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII-SGSEDGTLKI 254
Query: 177 WNASTAECIGSRDF-YRPIASIAFHASGELLAVASG 211
           WN+ST +   + +        IA H +G    +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
           C  +     ++ +        L S + D TVKI D +TG CL+ L G  +    V     
Sbjct: 311 CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG 203
           N   + + S D  V+LW+  T E      F R + ++    SG
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGE------FIRNLVTLESGGSG 407

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMR 222
             G RD    + S  +   GE +++    H L +WR N +
Sbjct: 193 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSK 229

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 92  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 152 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 97  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 157 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI----- 185
           ++II+  T  C+K   GH      ++FHP +P ++ S S DH +RLWN  T   +     
Sbjct: 96  IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 186 --GSRDFYRPIASIAFHASGE-LLAVASGHKLYIWRYNMREETSSPR 229
             G RD    + S  +   GE +++    H L +WR N +   ++ +
Sbjct: 156 VEGHRD---EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79  DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
           D  R    W+  +++ +L      + P   +   A FS DG+ +AS   D T+++   +T
Sbjct: 596 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 653
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
           G  L  +  H        F   + + IA+ S D +V++W+++T + + + D +   +   
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
            F      L +A+G     L +W  N +E
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 741

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
Query: 79  DARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT 138
           D  R    W+  +++ +L      + P   +   A FS DG+ +AS   D T+++   +T
Sbjct: 589 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 646
Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-RPIASI 197
           G  L  +  H        F   + + IA+ S D +V++W+++T + + + D +   +   
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 198 AFHASGELLAVASGHK---LYIWRYNMRE 223
            F      L +A+G     L +W  N +E
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 734

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
           D K + S  GD T+K+ +  T   ++ L+GH+R    +++      ++ SGS D+ +RLW
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 178 NASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW 217
           +     C+   + +  +       +  +++ A   K+ +W
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD 189
           V++ D ++GSC  +L GHR+    V + P    I+A+ S D  V+LW+   A  C+ + D
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 190 FYR----------------PIASIAFHASG-ELLAVASGHKLYIWRYNMREET 225
            +                  +  + F + G  LL V + +++ +W  +  E T
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           FS  G+ L + + D+T+ + D   GS + +L GH      +R  P + T   SGS DH +
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTL 350
Query: 175 RLW 177
           R+W
Sbjct: 351 RVW 353

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 362

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 351

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 57  RLLGETARKCSGSFS----QIFEAGRDARRGLASW-VEAESLHHL-RPKYCPLSPPPRST 110
           + LG T    S +FS    QI   GRD    L  W V+ E +H L R  +       R  
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRD--NALRVWNVKGECMHTLSRGAHTDWVSCVR-- 159
Query: 111 IAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG 168
               FSP  D   + S   D+ VK+ D  TG  +  L GH      V   P + ++ AS 
Sbjct: 160 ----FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP-DGSLCASS 214
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAF 199
             D   RLW+ +  E +       PI  I F
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICF 245

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSC----LKVLHGHRRTPWVVRFHPLNPTIIASG-- 168
           ++PDG+ LAS   D+ V +     G      L+    H+     V + P    ++A+G  
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 169 SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRY 219
           + D  +R+WN  +  C+ + D +  + SI +  S     + SGH     +L IW+Y
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQVCSILW--SPHYKELISGHGFAQNQLVIWKY 271

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           A A SPD K   S   D  + + D    + ++   GH      +     + T + +G LD
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN-DGTKLWTGGLD 204
Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVA 209
           + VR W+      +   DF   I S+ +  +GE LAV 
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 98  PKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157
            K   L    +  ++ A+SPDGK LAS   D  + I D  TG  L  L GH      + F
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTF 214
Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGS 187
            P +  ++ + S D  +++++   A   G+
Sbjct: 215 SP-DSQLLVTASDDGYIKIYDVQHANLAGT 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	730
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.93
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.93
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.92
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.92
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.91
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.91
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.9
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.9
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.9
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.9
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.9
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.9
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.9
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.89
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.89
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.89
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.89
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.88
2pm7_B	297	Protein transport protein SEC13, protein transport	99.88
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.88
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.88
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.88
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.88
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.88
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.88
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.87
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.87
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.87
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.87
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.87
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.86
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.86
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.86
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.86
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.86
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.86
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.86
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.86
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.86
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.86
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.86
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.85
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.85
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.85
3jro_A	753	Fusion protein of protein transport protein SEC13	99.85
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.84
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.84
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.84
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.84
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.84
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.84
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.84
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.83
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.83
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.83
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.83
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.83
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.82
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.82
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.82
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.82
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.82
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.82
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.82
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.82
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.81
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.81
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.81
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.81
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.8
3jro_A	753	Fusion protein of protein transport protein SEC13	99.8
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.8
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.79
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.79
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.79
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.79
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.77
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.77
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.76
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.75
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.74
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.73
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.72
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.71
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.69
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.69
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.67
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.66
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.64
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.63
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.63
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.63
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.62
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.62
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.61
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.61
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.6
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.56
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.56
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.56
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.55
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.55
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.54
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.54
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.53
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.51
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.51
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.47
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.46
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.45
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.45
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.4
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.39
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.38
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.38
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.35
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.32
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.27
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.2
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.19
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.17
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.11
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.11
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.09
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.09
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.08
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.08
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.04
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.0
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.0
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.0
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.98
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.93
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.9
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.9
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.9
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.89
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.87
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.85
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.78
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.77
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.76
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.7
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.67
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.63
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.6
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.6
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.55
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.54
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.4
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.38
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.22
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.21
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.2
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.19
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.14
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.08
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.08
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.07
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.06
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.06
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.06
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.97
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.97
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.96
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.9
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.87
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.86
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.73
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.72
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.66
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.65
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.64
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.57
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.54
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.51
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.5
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.47
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.42
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.41
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.35
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.33
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.29
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.21
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.14
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.06
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.05
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.01
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.01
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.89
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.81
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.8
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.77
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.62
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.51
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.48
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.41
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.15
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.15
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.06
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.05
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.05
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.94
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.9
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	95.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.68
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.45
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.42
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.16
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.07
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.94
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.79
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.01
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.83
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.75
3ott_A	758	Two-component system sensor histidine kinase; beta	93.15
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.12
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.97
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.59
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.58
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	90.65
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	90.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.15
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.5
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.89
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	88.28
3ott_A	758	Two-component system sensor histidine kinase; beta	88.11
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	87.75
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.0
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	85.4
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	84.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	83.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	82.89
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	82.42
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	81.56
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	80.38
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	80.35

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=6.7e-26  Score=243.62  Aligned_cols=212  Identities=12%  Similarity=0.112  Sum_probs=167.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~--------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      ....|++++.|++|++||+.+++        +.+|.+.|++++|+|||++|++|+.|++|++||+.+++++..+.+|.+.
T Consensus        92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B           92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            34689999999999999998763        3489999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCC-CCEEEEEECC-eEEEEEcCCCcccc
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHAS-GELLAVASGH-KLYIWRYNMREETS  226 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPd-G~~LAsgSdd-~I~VWDl~t~~~~~  226 (730)
                      |.+++|+|++..+|++++.|++|++||+++++....+.   +...+.+++|+|+ +++|++|+.+ .|+|||+++++.+ 
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~-  250 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV-  250 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC-
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE-
Confidence            99999999566799999999999999999998877754   4567999999995 5688888854 5999999988754 


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF  306 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpi  306 (730)
                        ..+.+|...|++++|+|+|..++++++.+                      ..+.+|+...++...    ..+....+
T Consensus       251 --~~~~~h~~~v~~v~fsp~g~~~lasgs~D----------------------~~i~vwd~~~~~~~~----~~~H~~~V  302 (344)
T 4gqb_B          251 --LSSAVHSQCVTGLVFSPHSVPFLASLSED----------------------CSLAVLDSSLSELFR----SQAHRDFV  302 (344)
T ss_dssp             --EEEECCSSCEEEEEECSSSSCCEEEEETT----------------------SCEEEECTTCCEEEE----ECCCSSCE
T ss_pred             --EEEcCCCCCEEEEEEccCCCeEEEEEeCC----------------------CeEEEEECCCCcEEE----EcCCCCCE
Confidence              37788999999999999996555544311                      123333332222111    11233456


Q ss_pred             eeeeEecCCCEEEE
Q 004785          307 LRPSFVRDDERISL  320 (730)
Q Consensus       307 l~p~FSpDg~rI~~  320 (730)
                      ..++|+||++++++
T Consensus       303 ~~v~~sp~~~~lla  316 (344)
T 4gqb_B          303 RDATWSPLNHSLLT  316 (344)
T ss_dssp             EEEEECSSSTTEEE
T ss_pred             EEEEEeCCCCeEEE
Confidence            67899999988765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=1.9e-25  Score=241.25  Aligned_cols=275  Identities=15%  Similarity=0.159  Sum_probs=205.1

Q ss_pred             CCCCCCcceecccccccccCCCCccceeeeccCcceeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-------
Q 004785           29 NHRNSRLRNVFGLLAQREVAPRTKHSSKRLLGETARKCSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYC-------  101 (730)
Q Consensus        29 ~~rsSk~r~If~~~~krEis~~~~~~~k~~wd~~~~~~s~s~s~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-------  101 (730)
                      -+|.||||++|+...+++.++.+.+.....|+.....++..+.          ..+++++.|+.|++|+....       
T Consensus         5 ~~~~sk~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~i~v~~~~~~~~~~~~~   74 (402)
T 2aq5_A            5 VVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFM----------ALICEASGGGAFLVLPLGKTGRVDKNV   74 (402)
T ss_dssp             ---CCTTTTCEEEECCGGGSEESCCBCCCCCSSCSEEECSSEE----------EEEBCCSSSCCEEEEETTCCEECCTTC
T ss_pred             ccCCCCCccccCcCCChhhcEecceeecCccCCCcEEECCCeE----------EEEEEEcCCCEEEEEECccCCCCCCCC
Confidence            3689999999999999999999999888888877665553221          22335677899999997542       


Q ss_pred             -CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC-------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC
Q 004785          102 -PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG-------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH  172 (730)
Q Consensus       102 -~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg-------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg  172 (730)
                       .+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++       +.+..+.+|...|.+++|+|++.+++++++.|+
T Consensus        75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence             4678999999999999 9999999999999999999988       668889999999999999994347999999999


Q ss_pred             cEEEEECCCCeEEEEe---cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEE-ecCCCC-eEEEEEccC
Q 004785          173 EVRLWNASTAECIGSR---DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIV-LRTRRS-LRAVHFHPH  246 (730)
Q Consensus       173 tVrLWDl~tg~~i~~l---~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l-~~h~~~-V~sVaFSPd  246 (730)
                      +|++||+.+++.+..+   .|...|.+++|+|+|++|++++. +.|++||+++++...   .+ ..|... +..+.|+|+
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~  231 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAVFVSE  231 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECSSCSSSCCEEEECST
T ss_pred             EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee---eeccCCCCCcceEEEEcCC
Confidence            9999999999998887   38889999999999999999995 459999999887543   34 566655 899999999


Q ss_pred             CCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCC
Q 004785          247 AAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHD  326 (730)
Q Consensus       247 G~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~d  326 (730)
                      +++++++.. ..                   ....+.+|+.......... ........+..+.|++|++.+++....+ 
T Consensus       232 ~~~l~~g~~-~~-------------------~d~~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~g~~d-  289 (402)
T 2aq5_A          232 GKILTTGFS-RM-------------------SERQVALWDTKHLEEPLSL-QELDTSSGVLLPFFDPDTNIVYLCGKGD-  289 (402)
T ss_dssp             TEEEEEEEC-TT-------------------CCEEEEEEETTBCSSCSEE-EECCCCSSCEEEEEETTTTEEEEEETTC-
T ss_pred             CcEEEEecc-CC-------------------CCceEEEEcCccccCCceE-EeccCCCceeEEEEcCCCCEEEEEEcCC-
Confidence            986665521 00                   0013444444333221111 1111233456789999999997643221 


Q ss_pred             CCcccceeecCCCc
Q 004785          327 SGATRTQQSLRSSS  340 (730)
Q Consensus       327 sgs~~~~~~~~ss~  340 (730)
                        ..+..+++....
T Consensus       290 --g~i~i~d~~~~~  301 (402)
T 2aq5_A          290 --SSIRYFEITSEA  301 (402)
T ss_dssp             --SCEEEEEECSST
T ss_pred             --CeEEEEEecCCC
Confidence              244555555433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=3.2e-25  Score=242.38  Aligned_cols=241  Identities=18%  Similarity=0.236  Sum_probs=197.9

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .++....+..|++++.|++|++||..++    .+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+++++..+.+|.
T Consensus       113 ~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  192 (410)
T 1vyh_C          113 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHD  192 (410)
T ss_dssp             EEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCS
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCC
Confidence            3444556789999999999999999876    467999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccC
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSS  227 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~  227 (730)
                      ..|.+++|+| +++++++++.|++|++||+++++++..+ .|...|.++.|+|+|++|++++.+ .|++||+++++... 
T Consensus       193 ~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~-  270 (410)
T 1vyh_C          193 HNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA-  270 (410)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred             CCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee-
Confidence            9999999999 8999999999999999999999988776 488899999999999999999955 59999998887543 


Q ss_pred             CeEEecCCCCeEEEEEccC--------------------CCeEEEEEe-----eCCccCCCcceeEeccCCccc---C--
Q 004785          228 PRIVLRTRRSLRAVHFHPH--------------------AAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y--  277 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPd--------------------G~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~--  277 (730)
                        .+..|...|.+++|+|+                    |.++++++.     +|++..+.....+..+.+.+.   +  
T Consensus       271 --~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~  348 (410)
T 1vyh_C          271 --ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS  348 (410)
T ss_dssp             --EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             --EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC
Confidence              67789999999999997                    555666543     888887766655555444321   0  


Q ss_pred             ---------CCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          278 ---------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       278 ---------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                               ....+.+|+...........   ....++..+.|+|++..|+..
T Consensus       349 ~g~~l~s~s~D~~i~vwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~sg  398 (410)
T 1vyh_C          349 GGKFILSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTG  398 (410)
T ss_dssp             SSSCEEEEETTTEEEEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEc---CCCCcEEEEEEcCCCCEEEEE
Confidence                     12457788876655544333   244567789999999988763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=3e-25  Score=235.01  Aligned_cols=236  Identities=14%  Similarity=0.159  Sum_probs=192.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      .+..|++++.|++|++|+....      .+.+|...|.+++|++++.++++++.|++|++||+.+++.+..+..|...+.
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~  126 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW  126 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence            4678999999999999998654      3789999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l  231 (730)
                      +++|+| +++++++++.|+.|++||+.+++....+. +...|.+++|+|+|++|++++.+ .|++||+++++...   .+
T Consensus       127 ~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~  202 (321)
T 3ow8_A          127 TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLH---TL  202 (321)
T ss_dssp             CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EE
T ss_pred             EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EE
Confidence            999999 99999999999999999999998877654 67789999999999999999955 59999999887544   67


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc---C-----------CCCeEEEecCCCCCC
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y-----------PPPVICMAGAHSSSH  292 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~-----------p~~~V~l~d~~s~d~  292 (730)
                      ..|...|++++|+|++++|++++.     +|++........+..+.+.+.   +           ....+.+|+..++..
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence            789999999999999997777654     788876665555444433221   1           124567777665544


Q ss_pred             CCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          293 PGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       293 ~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      ....   .....+++.+.|++|++.|+...
T Consensus       283 ~~~~---~~h~~~v~~v~~s~~g~~l~s~~  309 (321)
T 3ow8_A          283 VHTF---FDHQDQVWGVKYNGNGSKIVSVG  309 (321)
T ss_dssp             EEEE---CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEE---cCCCCcEEEEEECCCCCEEEEEe
Confidence            3332   23445677899999999888643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=2.9e-24  Score=223.21  Aligned_cols=241  Identities=20%  Similarity=0.282  Sum_probs=193.3

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      +....+..|++++.|+.|++|+..++    .+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+++|...
T Consensus        30 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  109 (312)
T 4ery_A           30 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY  109 (312)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             EECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC
Confidence            33457789999999999999998776    46799999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCe
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPR  229 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~  229 (730)
                      |.+++|+| +++++++++.|++|++||+++++.+..+. |...|.+++|+|++++|++++.+ .|++||+++++...  .
T Consensus       110 v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~  186 (312)
T 4ery_A          110 VFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK--T  186 (312)
T ss_dssp             EEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--E
T ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceee--E
Confidence            99999999 99999999999999999999999887765 78899999999999999999955 59999999876533  2


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc-----------------CCCCeEEEecC
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR-----------------YPPPVICMAGA  287 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~-----------------~p~~~V~l~d~  287 (730)
                      ....+...+..++|+|+++++++++.     +|++........+..+.+...                 .....+.+|+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~  266 (312)
T 4ery_A          187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL  266 (312)
T ss_dssp             ECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC
Confidence            23456678999999999998887664     788776554444433222100                 01245777876


Q ss_pred             CCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       288 ~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      .+.....   ...+....++..+|+|++..++...
T Consensus       267 ~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          267 QTKEIVQ---KLQGHTDVVISTACHPTENIIASAA  298 (312)
T ss_dssp             TTCCEEE---EECCCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCchhhh---hhhccCCcEEEEeecCcCCceEEEE
Confidence            6554332   2233455677889999999888643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.94  E-value=9.2e-25  Score=228.29  Aligned_cols=237  Identities=11%  Similarity=0.112  Sum_probs=183.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ++....+..|++++.|++|++||..++    .+..|...|.+++|+|++++|++|+.|++|++||+.+++.+..+++|.+
T Consensus        19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~   98 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD   98 (304)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCC
Confidence            334457889999999999999999876    4678999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEEe-cCCCCeEEEEEcC-CCCEEEEEEC-CeEEEEEcCCCcccc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR-DFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREETS  226 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~l-~h~~~V~sVafSP-dG~~LAsgSd-d~I~VWDl~t~~~~~  226 (730)
                      .|.+++|+| ++.++++++.|++|++||++++.. ...+ .|...|.+++|+| ++.+|++++. +.|++||++......
T Consensus        99 ~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~  177 (304)
T 2ynn_A           99 YIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (304)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE
T ss_pred             cEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence            999999999 899999999999999999998744 3444 5889999999999 6789999995 459999998765422


Q ss_pred             CCeEEecCCCCeEEEEEcc--CCCeEEEEEe-----eCCccCCCcceeEeccCCccc---C-----------CCCeEEEe
Q 004785          227 SPRIVLRTRRSLRAVHFHP--HAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y-----------PPPVICMA  285 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSP--dG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~-----------p~~~V~l~  285 (730)
                        .....|...+..+.|+|  +++++++++.     +|++........+..+.+.+.   +           ....+.+|
T Consensus       178 --~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iW  255 (304)
T 2ynn_A          178 --TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW  255 (304)
T ss_dssp             --EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred             --eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEE
Confidence              23345678899999987  6676766554     888887666555554433321   0           12345667


Q ss_pred             cCCCCCCCCcccccCCCCCCceeeeEecCCCE
Q 004785          286 GAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (730)
Q Consensus       286 d~~s~d~~~L~~~~~~~slpil~p~FSpDg~r  317 (730)
                      +..+.......   .......+.++|.|+++.
T Consensus       256 d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          256 NSSTYKVEKTL---NVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             ETTTCCEEEEE---CCSSSSEEEEEECTTCGG
T ss_pred             ECCCCceeeec---cCCCccEEEEEECCCCCc
Confidence            65554432222   122335566777777754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=2.6e-24  Score=226.69  Aligned_cols=186  Identities=15%  Similarity=0.206  Sum_probs=160.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      .+..|++++.|++|++|+....         .+.+|...|.+++|+|+|++|++++.|++|+|||+.+++.+..+.+|..
T Consensus        29 ~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~  108 (319)
T 3frx_A           29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS  108 (319)
T ss_dssp             CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC
Confidence            4578999999999999997531         4679999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCC------CCEEEEEECCe-EEEEEcCCCc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHAS------GELLAVASGHK-LYIWRYNMRE  223 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPd------G~~LAsgSdd~-I~VWDl~t~~  223 (730)
                      .|.+++|+| ++.++++++.|++|++||++.........|...|.++.|+|.      +.+|++++.++ |++||+++.+
T Consensus       109 ~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~  187 (319)
T 3frx_A          109 DVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ  187 (319)
T ss_dssp             CEEEEEECT-TSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence            999999999 999999999999999999986555455679999999999995      44889988554 9999998876


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~  269 (730)
                      ...   .+.+|...|.+++|+|+|++|++++.     +|++........+.
T Consensus       188 ~~~---~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          188 IEA---DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             EEE---EECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             hhe---eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence            533   67789999999999999998887664     78887665544443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.93  E-value=8.7e-24  Score=224.34  Aligned_cols=239  Identities=14%  Similarity=0.133  Sum_probs=180.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ++..|++++.|++|++||....           .+.+|...|.+++|+|++.+|++++.|++|++||+++++.+..+.+|
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h  117 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH  117 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence            6789999999999999998642           36799999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe---cCCCCeEEEEEcCCC----------CEEEEEEC-CeE
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR---DFYRPIASIAFHASG----------ELLAVASG-HKL  214 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l---~h~~~V~sVafSPdG----------~~LAsgSd-d~I  214 (730)
                      ...|.+++|+| +++++++++.|++|++||+.........   .|...|.+++|+|++          .+|++++. +.|
T Consensus       118 ~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i  196 (343)
T 2xzm_R          118 QSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL  196 (343)
T ss_dssp             CSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred             CCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence            99999999999 9999999999999999999854433333   477899999999987          78999985 559


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc---C---------
Q 004785          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y---------  277 (730)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~---------  277 (730)
                      ++||.. ...   ...+..|...|.+++|+|+|++|++++.     +|++...............+.   +         
T Consensus       197 ~iwd~~-~~~---~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~  272 (343)
T 2xzm_R          197 KVWNTN-FQI---RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV  272 (343)
T ss_dssp             EEEETT-TEE---EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE
T ss_pred             EEEcCC-Cce---eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEE
Confidence            999943 222   2356789999999999999998887664     788743322211111110000   0         


Q ss_pred             -CCCeEEEecCCCCCCCCccccc----------CCCCCCceeeeEecCCCEEEEEec
Q 004785          278 -PPPVICMAGAHSSSHPGLAEEV----------PLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       278 -p~~~V~l~d~~s~d~~~L~~~~----------~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                       ....+.+|+........+....          .+....+..++|+||++.|+....
T Consensus       273 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~  329 (343)
T 2xzm_R          273 GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT  329 (343)
T ss_dssp             EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred             ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence             0134666776554433311111          123345668999999999987443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=1.5e-23  Score=222.54  Aligned_cols=236  Identities=15%  Similarity=0.157  Sum_probs=187.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----SCLKVLHGH  148 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg----~~l~~l~gH  148 (730)
                      ...++..|++++.|++|++||..++    .+..|...|.+++|+|++++|++++.|+.|++||+.++    +....+.+|
T Consensus        63 ~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h  142 (340)
T 1got_B           63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGH  142 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECC
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCC
Confidence            3457789999999999999998876    35689999999999999999999999999999999875    456778999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcccc
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETS  226 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~  226 (730)
                      .+.|.++.|++ ++ .+++++.|++|++||+.+++.+..+. |...|.+++|+|++++|++++.+ .|++||++++....
T Consensus       143 ~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~  220 (340)
T 1got_B          143 TGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ  220 (340)
T ss_dssp             SSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             CccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEE
Confidence            99999999998 54 48899999999999999999888765 88999999999999999999954 59999999887543


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcc------c-----------CCCCeEEE
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYW------R-----------YPPPVICM  284 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~------~-----------~p~~~V~l  284 (730)
                         .+..|...|.+++|+|+++++++++.     +|+++.......+. ..++.      .           .....+.+
T Consensus       221 ---~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v  296 (340)
T 1got_B          221 ---TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNV  296 (340)
T ss_dssp             ---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             ---EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence               67789999999999999998877664     77777554333222 11110      0           01245677


Q ss_pred             ecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          285 AGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       285 ~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                      |+..........   .+...++..++|++|+..|+..
T Consensus       297 wd~~~~~~~~~~---~~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          297 WDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EETTTCCEEEEE---ECCSSCEEEEEECTTSSCEEEE
T ss_pred             EEcccCcEeeEe---ecCCCcEEEEEEcCCCCEEEEE
Confidence            776554433322   2345577788999999988864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.93  E-value=1.6e-23  Score=228.87  Aligned_cols=195  Identities=24%  Similarity=0.332  Sum_probs=172.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ++....+..|++++.|++|++||..+.    .+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|..
T Consensus       156 v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~  235 (410)
T 1vyh_C          156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE  235 (410)
T ss_dssp             EEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence            334457789999999999999999875    5789999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCC--------------------CCEEEEE
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHAS--------------------GELLAVA  209 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPd--------------------G~~LAsg  209 (730)
                      .|.++.|+| ++.++++++.|++|++||+.++++...+ .|...|.+++|+|+                    |.+|++|
T Consensus       236 ~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          236 WVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             cEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            999999999 9999999999999999999999888776 58889999999996                    6789999


Q ss_pred             ECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785          210 SGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (730)
Q Consensus       210 Sdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG  273 (730)
                      +.+ .|++||++++....   .+.+|...|++++|+|+|+++++++.     +|++........+..+.+
T Consensus       315 s~D~~i~iwd~~~~~~~~---~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~  381 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH  381 (410)
T ss_dssp             ETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS
T ss_pred             eCCCeEEEEECCCCceEE---EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC
Confidence            955 49999999887644   67789999999999999998888764     888887776666654443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.93  E-value=8.5e-24  Score=220.99  Aligned_cols=192  Identities=17%  Similarity=0.242  Sum_probs=163.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEEecCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHGHR  149 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~gH~  149 (730)
                      ......+..|++++.|++|++||..++    .+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|.
T Consensus        61 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~  140 (304)
T 2ynn_A           61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE  140 (304)
T ss_dssp             EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence            334557789999999999999999887    36799999999999999999999999999999999887 5567789999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcC--CCCEEEEEECC-eEEEEEcCCCcc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHA--SGELLAVASGH-KLYIWRYNMREE  224 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSP--dG~~LAsgSdd-~I~VWDl~t~~~  224 (730)
                      ..|.+++|+|.++.+|++|+.|++|++||+++++....+  .+...+..+.|+|  ++++|++++.+ .|+|||+++++.
T Consensus       141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~  220 (304)
T 2ynn_A          141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (304)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred             CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence            999999999977899999999999999999887665443  4667899999987  77899999955 599999998876


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~  269 (730)
                      ..   .+.+|...|.+++|+|++++|++++.     +|++...+....+.
T Consensus       221 ~~---~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          221 VA---TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             EE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ce---eeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc
Confidence            44   67889999999999999997777664     78877666554444

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.93  E-value=7e-24  Score=224.52  Aligned_cols=191  Identities=18%  Similarity=0.234  Sum_probs=168.3

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      .....+..+++++.|++|++||+.++    .+..|...+.+++|+|++++|++++.|+.|++||+++++....+..|...
T Consensus        87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~  166 (321)
T 3ow8_A           87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF  166 (321)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce
Confidence            34456678999999999999999876    35678889999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR  229 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~  229 (730)
                      |.+++|+| ++++|++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.++ |+|||++..+...   
T Consensus       167 v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~---  242 (321)
T 3ow8_A          167 ILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG---  242 (321)
T ss_dssp             EEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE---
T ss_pred             EEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE---
Confidence            99999999 99999999999999999999999888775 888999999999999999999655 9999999877543   


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEec
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLAT  270 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t  270 (730)
                      .+.+|...|.+++|+|++++|++++.     +|++........+..
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  288 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD  288 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC
Confidence            67789999999999999998887765     788876655555443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.93  E-value=1.1e-23  Score=223.55  Aligned_cols=171  Identities=16%  Similarity=0.244  Sum_probs=155.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      ...+++++.|++|++||+.++    .+.+|.+.|.+++|+|++++|++|+.|++|++||+++++++..+.+|...|.+++
T Consensus       154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
T 1got_B          154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC  233 (340)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred             CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE
Confidence            345899999999999999876    4789999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEe
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~  232 (730)
                      |+| ++++|++++.|++|++||+++++.+..+.+.   ..|.+++|+|+|++|++|++++ |++||+.+.+...   .+.
T Consensus       234 ~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~---~~~  309 (340)
T 1got_B          234 FFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG---VLA  309 (340)
T ss_dssp             ECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEE
T ss_pred             EcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee---Eee
Confidence            999 9999999999999999999999888777654   4799999999999999999654 9999998877544   678


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe
Q 004785          233 RTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       233 ~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +|...|.+++|+|+|++|++++.
T Consensus       310 ~h~~~v~~~~~s~dg~~l~s~s~  332 (340)
T 1got_B          310 GHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEET
T ss_pred             cCCCcEEEEEEcCCCCEEEEEcC
Confidence            89999999999999998877764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=2.8e-23  Score=216.28  Aligned_cols=179  Identities=15%  Similarity=0.142  Sum_probs=146.7

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCe--EEEEE
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGS--CLKVL  145 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~--~l~~l  145 (730)
                      +....+..|++++.|++|++||....      .+.+|.+.|++++|++  ++++|++|+.|++|+|||+++++  .+..+
T Consensus        16 ~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~   95 (297)
T 2pm7_B           16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH   95 (297)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred             EECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence            33457889999999999999998642      4789999999999987  48999999999999999999874  56778


Q ss_pred             ecCCCCcEEEEEccCC-CCEEEEEeCCCcEEEEECCCCe---EEEEecCCCCeEEEEEcCC-------------CCEEEE
Q 004785          146 HGHRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAE---CIGSRDFYRPIASIAFHAS-------------GELLAV  208 (730)
Q Consensus       146 ~gH~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~tg~---~i~~l~h~~~V~sVafSPd-------------G~~LAs  208 (730)
                      .+|...|.+++|+|+. +.+|++++.|++|++||++++.   ......|...|.+++|+|+             +++|++
T Consensus        96 ~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~s  175 (297)
T 2pm7_B           96 AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT  175 (297)
T ss_dssp             CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEE
T ss_pred             ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEE
Confidence            8999999999999931 7899999999999999998763   2233468899999999997             579999


Q ss_pred             EECC-eEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCC---CeEEEEE
Q 004785          209 ASGH-KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHA---APLLLTA  254 (730)
Q Consensus       209 gSdd-~I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG---~~Llatg  254 (730)
                      ++.+ .|+|||++++.... ....+.+|...|++++|+|++   .++++++
T Consensus       176 gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          176 GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence            9955 59999998765211 123567899999999999996   5455444

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.7e-23  Score=222.92  Aligned_cols=179  Identities=22%  Similarity=0.255  Sum_probs=153.7

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVL  145 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l  145 (730)
                      ++...++..|++++.|++|++||...+.       ..+|...|.+++|+|+|++|++|+.|++|+|||+.++  +++..+
T Consensus        22 l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~  101 (345)
T 3fm0_A           22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL  101 (345)
T ss_dssp             EEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc
Confidence            3444578899999999999999987652       3689999999999999999999999999999999876  457889


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE---EEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYN  220 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~  220 (730)
                      .+|...|.+++|+| ++++|++++.|++|++||+.++..   +..+ .|...|.+++|+|++++|++++.+ .|++||++
T Consensus       102 ~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~  180 (345)
T 3fm0_A          102 EGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE  180 (345)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE
T ss_pred             cCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec
Confidence            99999999999999 999999999999999999987643   3333 488899999999999999999955 59999998


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .++... ...+.+|...|++++|+|+|++|++++.
T Consensus       181 ~~~~~~-~~~~~~h~~~v~~l~~sp~g~~l~s~s~  214 (345)
T 3fm0_A          181 EDDWVC-CATLEGHESTVWSLAFDPSGQRLASCSD  214 (345)
T ss_dssp             TTEEEE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEE-EEEecCCCCceEEEEECCCCCEEEEEeC
Confidence            765322 2356789999999999999998877665

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.93  E-value=3.8e-24  Score=229.92  Aligned_cols=178  Identities=15%  Similarity=0.155  Sum_probs=152.5

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEEe--
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLH--  146 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~--  146 (730)
                      .++...++..|++++.|++|++||+.++    .+.+|...|++++|++++. +|++++.|++|++||+++++.+..+.  
T Consensus       132 ~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          132 TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence            3444567889999999999999999887    4789999999999999874 78999999999999999999888774  


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCC-CEEEEEECC-eEEEEEcCCCc
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG-ELLAVASGH-KLYIWRYNMRE  223 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG-~~LAsgSdd-~I~VWDl~t~~  223 (730)
                      .|...+.+++|+|++++++++|+.|++|+|||+++++++..+. |...|++++|+|+| ++|++++.+ .|+|||+++++
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~  291 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE  291 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred             eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence            4566789999999778899999999999999999999887764 88999999999998 578999855 59999998876


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..    .+.+|...|++++|+|++++++++++
T Consensus       292 ~~----~~~~H~~~V~~v~~sp~~~~llas~s  319 (344)
T 4gqb_B          292 LF----RSQAHRDFVRDATWSPLNHSLLTTVG  319 (344)
T ss_dssp             EE----EECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             EE----EEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence            43    46789999999999999998887765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=1.1e-23  Score=226.26  Aligned_cols=172  Identities=15%  Similarity=0.173  Sum_probs=144.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           81 RRGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~--------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ...+++++.|++|++||+.+++        +.+|...|++++|+|||++|++|+.|++|++||+++++.+..+++|...|
T Consensus       105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            4567788999999999987652        34799999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCC-CEEEEEECC-eEEEEEcCCCccccC
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASG-ELLAVASGH-KLYIWRYNMREETSS  227 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG-~~LAsgSdd-~I~VWDl~t~~~~~~  227 (730)
                      ++++|+|++..++++++.|++|++||+++++.+..+.   +...+.+++|+|++ ++|++|+.+ .|++||+++++... 
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~-  263 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ-  263 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE-
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE-
Confidence            9999999555789999999999999999988766543   56789999999985 588888854 59999999887543 


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                        .+..|...|++++|+|++..++++++
T Consensus       264 --~~~~~~~~v~~l~~sp~~~~~lasgs  289 (357)
T 4g56_B          264 --TSAVHSQNITGLAYSYHSSPFLASIS  289 (357)
T ss_dssp             --EECCCSSCEEEEEECSSSSCCEEEEE
T ss_pred             --EEeccceeEEEEEEcCCCCCEEEEEe
Confidence              67789999999999999865555543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.92  E-value=5.1e-23  Score=221.19  Aligned_cols=242  Identities=18%  Similarity=0.158  Sum_probs=182.9

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ....+..|++++.|+.|++||..++    .+.+|...|++++|+|++++|++++.|++|++||+.+++.+..+.+|...|
T Consensus       105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  184 (420)
T 3vl1_A          105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV  184 (420)
T ss_dssp             ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred             EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence            3457789999999999999999876    367999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CCCCeE---------------------EEEEcCCCCEEE
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIA---------------------SIAFHASGELLA  207 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~----h~~~V~---------------------sVafSPdG~~LA  207 (730)
                      .+++|+| ++++|++++.|++|++||+++++.+..+.    +...+.                     +++|+|+|++|+
T Consensus       185 ~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  263 (420)
T 3vl1_A          185 TDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI  263 (420)
T ss_dssp             EEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE
T ss_pred             EEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE
Confidence            9999999 89999999999999999999999888764    333444                     455578999999


Q ss_pred             EEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC-eEEEEEe-----eCCccCCCc-ceeEeccCCc-cc--
Q 004785          208 VASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA-PLLLTAE-----VNDLDSSES-SLTLATSPGY-WR--  276 (730)
Q Consensus       208 sgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~-~Llatgs-----vwdl~s~~~-~~~l~t~sG~-~~--  276 (730)
                      +++.+ .|++||+++++...  .....|...|.+++|+|+++ ++++++.     +|+++.... ...+..+.+. +.  
T Consensus       264 ~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~  341 (420)
T 3vl1_A          264 AGHVSGVITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV  341 (420)
T ss_dssp             EEETTSCEEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred             EEcCCCeEEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence            99955 49999999887533  23345788999999999999 5665543     888887654 3333321111 00  


Q ss_pred             -----------CCCCeEEEecCCCCCCCCcc------cccCCCCCCceeeeEecCCC---EEEEE
Q 004785          277 -----------YPPPVICMAGAHSSSHPGLA------EEVPLITPPFLRPSFVRDDE---RISLQ  321 (730)
Q Consensus       277 -----------~p~~~V~l~d~~s~d~~~L~------~~~~~~slpil~p~FSpDg~---rI~~~  321 (730)
                                 .....+.+|+...+......      .........+...+|+||++   +|++.
T Consensus       342 ~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~  406 (420)
T 3vl1_A          342 YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV  406 (420)
T ss_dssp             EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred             EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence                       01245667775553322111      11112233455788999998   66653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=9.7e-24  Score=227.76  Aligned_cols=245  Identities=13%  Similarity=0.166  Sum_probs=188.8

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-------EEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-------CLK  143 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-------~l~  143 (730)
                      +.....+..|++++.|++|++||..++    .+..|...|.+++|+|+|++|++|+.|+.|++||+.+..       ...
T Consensus        72 ~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~  151 (380)
T 3iz6_a           72 LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSR  151 (380)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCcccee
Confidence            334457789999999999999999876    467899999999999999999999999999999987532       345


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe------cCCCCeEEEEEcC-CCCEEEEEECC-eEE
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHA-SGELLAVASGH-KLY  215 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l------~h~~~V~sVafSP-dG~~LAsgSdd-~I~  215 (730)
                      .+.+|.+.|.++.|+|+++..+++++.|++|++||+.+++.+..+      .|...|.+++|++ ++++|++|+.+ .|+
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            678999999999999966778999999999999999999988765      3778999999987 88999999955 599


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCc----------------
Q 004785          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGY----------------  274 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~----------------  274 (730)
                      +||++....  ....+.+|...|.+++|+|+|+++++++.     +|+++.+.....+......                
T Consensus       232 ~wd~~~~~~--~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  309 (380)
T 3iz6_a          232 LWDLRITSR--AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS  309 (380)
T ss_dssp             EEETTTTCC--CCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred             EEECCCCCc--ceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC
Confidence            999985432  23467789999999999999998877664     8888766544433322111                


Q ss_pred             --c---cCCCCeEEEecCCCCCCCCcc-cccCCCCCCceeeeEecCCCEEEEE
Q 004785          275 --W---RYPPPVICMAGAHSSSHPGLA-EEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       275 --~---~~p~~~V~l~d~~s~d~~~L~-~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                        .   ......+.+|+...++..... ........++...+|+||++.|+..
T Consensus       310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  362 (380)
T 3iz6_a          310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG  362 (380)
T ss_dssp             SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred             CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence              0   012345677776554432222 1113345567789999999998863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.92  E-value=6.7e-23  Score=219.66  Aligned_cols=241  Identities=12%  Similarity=0.131  Sum_probs=188.4

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC------eEEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG------SCLKV  144 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg------~~l~~  144 (730)
                      ++....+..|++++.|++|++||..++    .+..|...|.+++|+|+|.+|++++.|+.+++|++...      .....
T Consensus        70 ~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~  149 (354)
T 2pbi_B           70 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS  149 (354)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccccccee
Confidence            444457789999999999999998765    35678889999999999999999999999999998653      34567


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcC--CCCEEEEEEC-CeEEEEEcC
Q 004785          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHA--SGELLAVASG-HKLYIWRYN  220 (730)
Q Consensus       145 l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSP--dG~~LAsgSd-d~I~VWDl~  220 (730)
                      +.+|.+.|.+++|+| ++..+++++.|++|++||+.+++.+..+. |...|.+++|+|  +|++|++++. +.|++||++
T Consensus       150 ~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          150 VAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             eeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            789999999999999 88999999999999999999999888764 888999999987  5789999995 559999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEecc-------------CCccc---CCC
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS-------------PGYWR---YPP  279 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~-------------sG~~~---~p~  279 (730)
                      +++...   .+..|...|.+++|+|++.++++++.     +|+++.......+...             .|..-   ...
T Consensus       229 ~~~~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d  305 (354)
T 2pbi_B          229 SGQCVQ---AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND  305 (354)
T ss_dssp             TCCEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCcEEE---EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC
Confidence            987544   67789999999999999998777664     7777654433222211             11100   112


Q ss_pred             CeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      ..+.+|+...+.....   ..+...++..++|+||++.|+...
T Consensus       306 ~~i~vwd~~~~~~~~~---l~~h~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          306 YTINVWDVLKGSRVSI---LFGHENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             SCEEEEETTTCSEEEE---ECCCSSCEEEEEECTTSSCEEEEE
T ss_pred             CcEEEEECCCCceEEE---EECCCCcEEEEEECCCCCEEEEEc
Confidence            4577787655543322   234556777899999999988643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.92  E-value=6.7e-23  Score=219.66  Aligned_cols=175  Identities=17%  Similarity=0.245  Sum_probs=155.8

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ....+..|++++.|++|++||+.++    .+.+|...|.+++|+|  +|++|++|+.|++|++||+++++++..+.+|..
T Consensus       162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~  241 (354)
T 2pbi_B          162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES  241 (354)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence            3456678999999999999999887    3678999999999988  578999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---CCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcccc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVASGH-KLYIWRYNMREETS  226 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h---~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~  226 (730)
                      .|.+++|+| ++++|++++.|++|++||+++++.+..+..   ...+.+++|+|+|++|++++.+ .|+|||+.+++...
T Consensus       242 ~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~  320 (354)
T 2pbi_B          242 DVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS  320 (354)
T ss_dssp             CEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred             CeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence            999999999 899999999999999999999888776653   3478999999999999999955 59999998887543


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                         .+.+|...|.+++|+|||++|++++.
T Consensus       321 ---~l~~h~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          321 ---ILFGHENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             ---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ---EEECCCCcEEEEEECCCCCEEEEEcC
Confidence               67789999999999999998877664

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.92  E-value=3.6e-23  Score=227.01  Aligned_cols=190  Identities=17%  Similarity=0.151  Sum_probs=155.1

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecC--C
Q 004785           79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--R  149 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--~  149 (730)
                      ..+..|++|+.||+|++||+.++      .+.+|.+.|++|+|+| ++++|++++.|++|+|||++++........|  .
T Consensus       130 ~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  209 (435)
T 4e54_B          130 THPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTIN  209 (435)
T ss_dssp             SCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCC
Confidence            35678999999999999998765      3568999999999998 7899999999999999999876544433333  3


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEEEEC-CeEEEEEcCCCccccC
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVASG-HKLYIWRYNMREETSS  227 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAsgSd-d~I~VWDl~t~~~~~~  227 (730)
                      ..+.+++|+| ++.+|++|+.|++|++||++.........|...|.+++|+|+++ +|++++. +.|+|||+++.+....
T Consensus       210 ~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~  288 (435)
T 4e54_B          210 IWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS  288 (435)
T ss_dssp             CCCCCEEEET-TTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred             ccEEEEEECC-CCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence            4578899999 99999999999999999997654433456899999999999987 7778885 4599999998776544


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~  269 (730)
                      .....+|...|++++|+|+|++|++++.     +|++..++....+.
T Consensus       289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred             EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence            4455679999999999999998888765     78887776655443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.7e-22  Score=212.27  Aligned_cols=177  Identities=20%  Similarity=0.264  Sum_probs=142.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCC------C-CC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-------CeEEEEEec
Q 004785           83 GLASWVEAESLHHLRPKYCP------L-SP-PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-------GSCLKVLHG  147 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~~------L-~g-H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-------g~~l~~l~g  147 (730)
                      .|++++.|++|++||..++.      + .+ |...|.+++|+|++++|++++.|++|+|||+..       .+.+..+.+
T Consensus        26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence            89999999999999998641      2 34 999999999999999999999999999999853       456788899


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC----eEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA----ECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg----~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t  221 (730)
                      |.+.|.+++|+| ++++|++++.|++|++||+...    +++..+ .|...|.+++|+|++++|++++.+ .|++||...
T Consensus       106 h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          106 HENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             ---CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999999999999 8999999999999999999532    445544 588999999999999999999955 599999876


Q ss_pred             CccccCCeEEecCCCCeEEEEEccC--CCeEEEEEe-----eCCccC
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPd--G~~Llatgs-----vwdl~s  261 (730)
                      +... ....+.+|...|.+++|+|+  +.++++++.     +|++..
T Consensus       185 ~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          185 DDWE-CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             TEEE-EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             CCee-EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            6321 13367789999999999999  555665543     676653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=2.5e-22  Score=217.71  Aligned_cols=185  Identities=21%  Similarity=0.297  Sum_probs=154.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC----CCCCC------------------CCeEEEEECCCCCEEEEEeCCCeEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCP----LSPPP------------------RSTIAAAFSPDGKTLASTHGDHTVK  132 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~------------------~~Vt~lafSPDG~~LaSgS~DgtVr  132 (730)
                      ++...++..|++++ ++++++|+..++.    +..|.                  ..|.+++|+|||++|++|+.|++|+
T Consensus        70 v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~  148 (393)
T 1erj_A           70 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR  148 (393)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEE
Confidence            33445777888876 7899999988763    33332                  2499999999999999999999999


Q ss_pred             EEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 004785          133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASG  211 (730)
Q Consensus       133 VWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSP-dG~~LAsgSd  211 (730)
                      |||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||++++++...+.+...+.+++|+| +|++|++++.
T Consensus       149 iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          149 IWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             EEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcC
Confidence            999999999999999999999999999 89999999999999999999999988888889999999999 8999999995


Q ss_pred             C-eEEEEEcCCCccccCC----eEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785          212 H-KLYIWRYNMREETSSP----RIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       212 d-~I~VWDl~t~~~~~~~----~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s  261 (730)
                      + .|++||++++......    ....+|...|.+++|+|+|+++++++.     +|++..
T Consensus       228 d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            5 4999999887653311    112568899999999999998877654     777764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=1e-22  Score=233.99  Aligned_cols=254  Identities=14%  Similarity=0.138  Sum_probs=190.0

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCeEE
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCL  142 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~D----gtVrVWDl~tg~~l  142 (730)
                      ..++...++..|++++.|++|++||..++      .+.+|.+.|.+++|+|||++|++++.+    +.|++||  +++.+
T Consensus        63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~  140 (611)
T 1nr0_A           63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSN  140 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBC
T ss_pred             EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCc
Confidence            34455668899999999999999998643      356899999999999999999999875    4788887  56677


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcC
Q 004785          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYN  220 (730)
Q Consensus       143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~  220 (730)
                      ..+.+|.+.|++++|+|++..+|++++.|++|++||..+++++..+. |...|.+++|+|||++|++++.+ .|+|||+.
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence            78899999999999999444579999999999999999988877764 88999999999999999999955 49999998


Q ss_pred             CCccccCCeEE-------ecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccC-----------
Q 004785          221 MREETSSPRIV-------LRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY-----------  277 (730)
Q Consensus       221 t~~~~~~~~~l-------~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~-----------  277 (730)
                      +++...   .+       .+|...|.+++|+|+|++|++++.     +|++..++....+.....+...           
T Consensus       221 ~g~~~~---~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (611)
T 1nr0_A          221 DGTKTG---VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL  297 (611)
T ss_dssp             TCCEEE---ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred             CCcEee---eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence            876543   22       169999999999999998877654     8888766655444322111100           


Q ss_pred             ----CCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCC
Q 004785          278 ----PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS  338 (730)
Q Consensus       278 ----p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~s  338 (730)
                          ....+.+|+...+.   ......+...++..++|+||++.|+....+.    .+..+++.+
T Consensus       298 ~s~s~d~~i~~~~~~~~~---~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~----~v~~Wd~~~  355 (611)
T 1nr0_A          298 VSISANGFINFVNPELGS---IDQVRYGHNKAITALSSSADGKTLFSADAEG----HINSWDIST  355 (611)
T ss_dssp             EEEETTCCEEEEETTTTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTT
T ss_pred             EEEeCCCcEEEEeCCCCC---cceEEcCCCCCEEEEEEeCCCCEEEEEeCCC----cEEEEECCC
Confidence                11234555543332   1122234555677899999999998744332    334455443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=5.5e-22  Score=204.63  Aligned_cols=218  Identities=18%  Similarity=0.166  Sum_probs=179.3

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      ..+...++..|++++.|+.|++||...+.      +..|...|.+++|+|++++|++++.|+.|++||+++++.+..+++
T Consensus       102 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~  181 (337)
T 1gxr_A          102 SCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG  181 (337)
T ss_dssp             EEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence            34445577889999999999999998753      568999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCcccc
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETS  226 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~  226 (730)
                      |...|.+++|+| +++++++++.|+.|++||+++++.+..+.+...+.+++|+|++++|++++. +.|++||+++.+.  
T Consensus       182 ~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--  258 (337)
T 1gxr_A          182 HTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--  258 (337)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--
T ss_pred             ccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--
Confidence            999999999999 899999999999999999999999999999999999999999999999995 4599999988764  


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPF  306 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpi  306 (730)
                        .....|...|.+++|+|+++++++++..                       ..+.+|+..........    ....++
T Consensus       259 --~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------g~i~~~~~~~~~~~~~~----~~~~~v  309 (337)
T 1gxr_A          259 --YQLHLHESCVLSLKFAYCGKWFVSTGKD-----------------------NLLNAWRTPYGASIFQS----KESSSV  309 (337)
T ss_dssp             --EEECCCSSCEEEEEECTTSSEEEEEETT-----------------------SEEEEEETTTCCEEEEE----ECSSCE
T ss_pred             --EEEcCCccceeEEEECCCCCEEEEecCC-----------------------CcEEEEECCCCeEEEEe----cCCCcE
Confidence              2467889999999999999987766531                       12333333332221111    113356


Q ss_pred             eeeeEecCCCEEEEEec
Q 004785          307 LRPSFVRDDERISLQHT  323 (730)
Q Consensus       307 l~p~FSpDg~rI~~~~~  323 (730)
                      ..+.|++|++.++....
T Consensus       310 ~~~~~s~~~~~l~~~~~  326 (337)
T 1gxr_A          310 LSCDISVDDKYIVTGSG  326 (337)
T ss_dssp             EEEEECTTSCEEEEEET
T ss_pred             EEEEECCCCCEEEEecC
Confidence            67899999999887443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.91  E-value=2.3e-22  Score=217.89  Aligned_cols=193  Identities=22%  Similarity=0.266  Sum_probs=158.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ++...++..|++++.|++|++||..++    .+.+|...|.+++|+|++++|++++.|++|++||++++++...+. +..
T Consensus       129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~  207 (393)
T 1erj_A          129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IED  207 (393)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence            334557889999999999999999876    478999999999999999999999999999999999999888876 556


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--------~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t  221 (730)
                      .+.+++|+|.+++++++++.|++|++||+++++.+..+        .|...|.+++|+|+|++|++++. +.|++||++.
T Consensus       208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            79999999978899999999999999999999877664        47789999999999999999995 4599999976


Q ss_pred             Ccccc---------CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeE
Q 004785          222 REETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTL  268 (730)
Q Consensus       222 ~~~~~---------~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l  268 (730)
                      .....         ....+.+|...|.+++|+|+++++++++.     +|++..+.....+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l  348 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  348 (393)
T ss_dssp             -------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Confidence            53211         12346679999999999999998877664     6666655544333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.91  E-value=9.2e-22  Score=209.89  Aligned_cols=240  Identities=13%  Similarity=0.088  Sum_probs=182.5

Q ss_pred             ecCC-CEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecC-
Q 004785           78 RDAR-RGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-  148 (730)
Q Consensus        78 ~d~g-~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-  148 (730)
                      ...+ ..|++++.|+.|++||..++.      +.+|...|.+++|+| ++++|++++.|+.|++||+.+ +.+..+..| 
T Consensus        82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~  160 (383)
T 3ei3_B           82 HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD  160 (383)
T ss_dssp             CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC
T ss_pred             CCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC
Confidence            3444 799999999999999998652      347999999999999 789999999999999999986 556666544 


Q ss_pred             --CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCC-EEEEEECC-eEEEEEcCCCc
Q 004785          149 --RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGE-LLAVASGH-KLYIWRYNMRE  223 (730)
Q Consensus       149 --~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~-~LAsgSdd-~I~VWDl~t~~  223 (730)
                        ...|.+++|+| +++++++++.|+.|++||++ ++.+.. ..|...|.+++|+|+++ +|++++.+ .|++||+++.+
T Consensus       161 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  238 (383)
T 3ei3_B          161 SWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK  238 (383)
T ss_dssp             CSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC
T ss_pred             CCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC
Confidence              47899999999 99999999999999999995 555555 45899999999999999 89999855 59999999854


Q ss_pred             cccCCeEEecCCCCeEEEEEcc-CCCeEEEEEe-----eCCccCCCcceeEeccCCcc--------------------cC
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE-----VNDLDSSESSLTLATSPGYW--------------------RY  277 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSP-dG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~--------------------~~  277 (730)
                      ..........|...|.+++|+| +++++++++.     +|++..+.....+..+....                    .+
T Consensus       239 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  318 (383)
T 3ei3_B          239 DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR  318 (383)
T ss_dssp             STTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred             cccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence            3222334457999999999999 9998887764     88888777655554322110                    00


Q ss_pred             ---------CCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          278 ---------PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       278 ---------p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                               ....+.+|+..++.......... ....+..++|++|++.|+..
T Consensus       319 s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~-~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          319 YPDDQLLLNDKRTIDIYDANSGGLVHQLRDPN-AAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             BCCTTTCTTCCCCEEEEETTTCCEEEEECBTT-BCSCCCEEEECTTSSEEEEE
T ss_pred             cCCcccccCCCCeEEEEecCCCceeeeecCCC-CCceEEEEEEecCccEEEEe
Confidence                     13568888877665543332211 11122356999999998875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.91  E-value=5.2e-22  Score=228.20  Aligned_cols=189  Identities=16%  Similarity=0.230  Sum_probs=159.5

Q ss_pred             EEEecCCCEEEEEeCC----CeEEEEeCCCC--CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           75 EAGRDARRGLASWVEA----ESLHHLRPKYC--PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~D----gsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      ++...++..|++++.+    +.|++||....  .+.+|...|++++|+|++. +|++++.|++|++||..+++++..+.+
T Consensus       109 v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~  188 (611)
T 1nr0_A          109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE  188 (611)
T ss_dssp             EEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc
Confidence            3344567788887765    47999986433  6889999999999999987 599999999999999999999999999


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------cCCCCeEEEEEcCCCCEEEEEECC-eEEEEE
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASGH-KLYIWR  218 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--------~h~~~V~sVafSPdG~~LAsgSdd-~I~VWD  218 (730)
                      |.+.|++++|+| ++++|++++.|++|++||+.+++.+..+        .|.+.|.+++|+|+|++|++++.+ .|+|||
T Consensus       189 H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd  267 (611)
T 1nr0_A          189 HTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN  267 (611)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            999999999999 9999999999999999999999988776        588999999999999999999955 599999


Q ss_pred             cCCCccccC----------------------------------------CeEEecCCCCeEEEEEccCCCeEEEEEe---
Q 004785          219 YNMREETSS----------------------------------------PRIVLRTRRSLRAVHFHPHAAPLLLTAE---  255 (730)
Q Consensus       219 l~t~~~~~~----------------------------------------~~~l~~h~~~V~sVaFSPdG~~Llatgs---  255 (730)
                      +.+++....                                        ...+.+|...|++++|+|||++|++++.   
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~  347 (611)
T 1nr0_A          268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGH  347 (611)
T ss_dssp             TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCc
Confidence            987653210                                        1133578899999999999998887764   


Q ss_pred             --eCCccCCCc
Q 004785          256 --VNDLDSSES  264 (730)
Q Consensus       256 --vwdl~s~~~  264 (730)
                        +|++..+..
T Consensus       348 v~~Wd~~~~~~  358 (611)
T 1nr0_A          348 INSWDISTGIS  358 (611)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCCce
Confidence              777765543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=1.4e-22  Score=235.63  Aligned_cols=182  Identities=17%  Similarity=0.186  Sum_probs=157.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      ++...|++++.|++|++|++...         .+.+|...|.+++|+|++++|++|+.|++|+|||+.+++.+..+.+|.
T Consensus       393 ~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~  472 (694)
T 3dm0_A          393 DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT  472 (694)
T ss_dssp             TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC
Confidence            45678999999999999998653         367899999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCCCeEEEEEcCCC--CEEEEEEC-CeEEEEEcCCC
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASG--ELLAVASG-HKLYIWRYNMR  222 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~~V~sVafSPdG--~~LAsgSd-d~I~VWDl~t~  222 (730)
                      ..|.+++|+| ++++|++++.|++|++||+.........    .|...|.+++|+|++  ..|++++. +.|+|||+++.
T Consensus       473 ~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          473 KDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC
Confidence            9999999999 8999999999999999998765444332    477889999999987  58888885 45999999887


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCc
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES  264 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~  264 (730)
                      +...   .+.+|...|++++|+|+|+++++++.     +|++..+..
T Consensus       552 ~~~~---~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          552 KLRS---TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             CEEE---EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             cEEE---EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence            6543   67789999999999999998777664     787775544

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.91  E-value=2.8e-22  Score=211.23  Aligned_cols=175  Identities=18%  Similarity=0.225  Sum_probs=151.6

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      .+...++..|++++.|++|++||+.++    .+.+|...|.+++|+|++++|++|+.|++|++||++ ++++..+.+|..
T Consensus        71 ~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~  149 (319)
T 3frx_A           71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHND  149 (319)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCC
Confidence            344567889999999999999999887    477999999999999999999999999999999986 567888999999


Q ss_pred             CcEEEEEccC-----CCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004785          151 TPWVVRFHPL-----NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (730)
Q Consensus       151 ~V~sVafSP~-----dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~  223 (730)
                      .|.+++|+|.     ++.++++++.|++|++||+++++....+ .|...|.+++|+|+|++|++++.+ .|+|||+.+++
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999983     2348999999999999999998887765 589999999999999999999955 59999999887


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ...    ...+...|.+++|+|++.+++++.
T Consensus       230 ~~~----~~~~~~~v~~~~~sp~~~~la~~~  256 (319)
T 3frx_A          230 AMY----TLSAQDEVFSLAFSPNRYWLAAAT  256 (319)
T ss_dssp             EEE----EEECCSCEEEEEECSSSSEEEEEE
T ss_pred             EEE----EecCCCcEEEEEEcCCCCEEEEEc
Confidence            543    334557899999999999776654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=9.4e-22  Score=206.31  Aligned_cols=225  Identities=15%  Similarity=0.129  Sum_probs=172.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCe--EEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKV  144 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~  144 (730)
                      ++....+..|++++.|+.|++||....      .+.+|...|++++|+++  +++|++++.|+.|++||+.+++  .+..
T Consensus        17 ~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~   96 (379)
T 3jrp_A           17 AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV   96 (379)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee
Confidence            334457789999999999999998732      47799999999999987  9999999999999999999987  7788


Q ss_pred             EecCCCCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCCeE---EEEecCCCCeEEEEEcC-------------CCCEE
Q 004785          145 LHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHA-------------SGELL  206 (730)
Q Consensus       145 l~gH~~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~---i~~l~h~~~V~sVafSP-------------dG~~L  206 (730)
                      +.+|...|.+++|+| +  +.++++++.|+.|++||+.++..   .....|...|.+++|+|             ++++|
T Consensus        97 ~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A           97 HAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             ECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEE
T ss_pred             ecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEE
Confidence            889999999999999 6  89999999999999999998733   33346889999999999             69999


Q ss_pred             EEEECC-eEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccC---CCeEEEEEeeCCccCCCcceeEeccCCcccCCCCe
Q 004785          207 AVASGH-KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPH---AAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPV  281 (730)
Q Consensus       207 AsgSdd-~I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPd---G~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~  281 (730)
                      ++++.+ .|++||++...... ....+..|...|.+++|+|+   ++++++++...                       .
T Consensus       176 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----------------------~  232 (379)
T 3jrp_A          176 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----------------------T  232 (379)
T ss_dssp             EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-----------------------C
T ss_pred             EEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-----------------------E
Confidence            999954 59999998765422 12355678999999999999   77666655311                       2


Q ss_pred             EEEecCCCCCCCCcc--cccCCCCCCceeeeEecCCCEEEEEec
Q 004785          282 ICMAGAHSSSHPGLA--EEVPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       282 V~l~d~~s~d~~~L~--~~~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                      +.+|+..........  ........++..++|+||++.|++...
T Consensus       233 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~  276 (379)
T 3jrp_A          233 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  276 (379)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred             EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence            233332222111100  011112345668899999999887544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.90  E-value=4.2e-23  Score=219.00  Aligned_cols=176  Identities=16%  Similarity=0.203  Sum_probs=140.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEEecCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~l~gH~  149 (730)
                      .++..|++++.|+.|++||..++      .+.+|...|++++|+|++++|++++.|++|++||+.+++   ....+.+|.
T Consensus        21 ~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~  100 (377)
T 3dwl_C           21 SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN  100 (377)
T ss_dssp             SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS
T ss_pred             CCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC
Confidence            46778999999999999998764      477999999999999999999999999999999999887   677788999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE---EEEe-c-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGSR-D-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~l-~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~  223 (730)
                      ..|.+++|+| ++++|++++.|++|++||+++++.   ...+ . |...|.+++|+|++++|++++.+ .|++||++..+
T Consensus       101 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          101 RAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             SCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred             CceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence            9999999999 999999999999999999998863   4444 3 88999999999999999999955 59999996432


Q ss_pred             cc--------------cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ET--------------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~--------------~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..              ........|...|.+++|+|+|+++++++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~  225 (377)
T 3dwl_C          180 VDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH  225 (377)
T ss_dssp             CC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET
T ss_pred             cCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC
Confidence            10              001111278899999999999998887764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.90  E-value=9.7e-22  Score=209.30  Aligned_cols=180  Identities=21%  Similarity=0.301  Sum_probs=149.8

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---SCLKVL  145 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg---~~l~~l  145 (730)
                      ++....+..|++++.|++|++|+....      .+.+|...|.+++|+|++++|++++.|++|++||+.++   +++..+
T Consensus        67 ~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL  146 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe
Confidence            344457889999999999999998754      47799999999999999999999999999999999876   346778


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE--EEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--GSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNM  221 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i--~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t  221 (730)
                      .+|...|.+++|+| ++++|++++.|++|++||+.+++..  ..+ .|...|.+++|+|+|++|++++.++ |+|||...
T Consensus       147 ~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          147 NSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             cCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            89999999999999 8999999999999999999887643  333 5889999999999999999999655 99999754


Q ss_pred             CccccC------------CeEEec-CCCCeEEEEEccCCCeEEEEEe
Q 004785          222 REETSS------------PRIVLR-TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       222 ~~~~~~------------~~~l~~-h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ......            ...+.+ |...|++++|+|++..+++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~  272 (345)
T 3fm0_A          226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG  272 (345)
T ss_dssp             TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence            322110            011222 7889999999999998887764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.90  E-value=9.6e-23  Score=214.45  Aligned_cols=177  Identities=16%  Similarity=0.141  Sum_probs=144.3

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCC--eEEEEEec
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG--SCLKVLHG  147 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg--~~l~~l~g  147 (730)
                      ...+..|++++.|++|++||+.++      .+.+|.+.|.+++|++  ++++|++|+.|++|++||++++  +.+..+.+
T Consensus        22 s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~  101 (316)
T 3bg1_A           22 DYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAG  101 (316)
T ss_dssp             CGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECC
T ss_pred             cCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccC
Confidence            346789999999999999998764      3679999999999986  4899999999999999999987  46677889


Q ss_pred             CCCCcEEEEEccCC-CCEEEEEeCCCcEEEEECCCCeEE---EE-ecCCCCeEEEEEcCC-----------------CCE
Q 004785          148 HRRTPWVVRFHPLN-PTIIASGSLDHEVRLWNASTAECI---GS-RDFYRPIASIAFHAS-----------------GEL  205 (730)
Q Consensus       148 H~~~V~sVafSP~d-g~lLaSgS~DgtVrLWDl~tg~~i---~~-l~h~~~V~sVafSPd-----------------G~~  205 (730)
                      |...|.+++|+|++ +.+|++++.|++|++||++++...   .. ..|...|.+++|+|+                 +++
T Consensus       102 h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (316)
T 3bg1_A          102 HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR  181 (316)
T ss_dssp             CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB
T ss_pred             CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccce
Confidence            99999999999932 789999999999999999876322   22 247788999999998                 478


Q ss_pred             EEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCC----CeEEEEE
Q 004785          206 LAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA----APLLLTA  254 (730)
Q Consensus       206 LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG----~~Llatg  254 (730)
                      |++++.+ .|+|||++..........+.+|...|++++|+|++    ++|++++
T Consensus       182 l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s  235 (316)
T 3bg1_A          182 FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS  235 (316)
T ss_dssp             EECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred             EEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence            9999854 59999997553211123466899999999999997    5555544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.90  E-value=1e-21  Score=220.24  Aligned_cols=214  Identities=25%  Similarity=0.358  Sum_probs=170.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      .+...++..|+++..|+.|++|+....   .+.+|...|.+++|+|||++|++++.|+.|++||. +++.+..+.+|...
T Consensus       350 ~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~  428 (577)
T 2ymu_A          350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  428 (577)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC
Confidence            444567889999999999999997544   46789999999999999999999999999999995 67888999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeE
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRI  230 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~  230 (730)
                      |++++|+| +++++++++.|++|++||...........|...|.+++|+|||++|+++++++ |+|||.. ++..   ..
T Consensus       429 v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~---~~  503 (577)
T 2ymu_A          429 VWGVAFSP-DDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL---QT  503 (577)
T ss_dssp             EEEEEECT-TSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEE---EE
T ss_pred             eEEEEECC-CCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEE---EE
Confidence            99999999 99999999999999999975443334456899999999999999999999655 9999964 4432   36


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeee
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPS  310 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~  310 (730)
                      +.+|...|++++|+|||++|++++...                       .+.+|+. .++.   .....+...+++.++
T Consensus       504 ~~~h~~~v~~l~~s~dg~~l~s~~~dg-----------------------~v~lwd~-~~~~---~~~~~~h~~~v~~~~  556 (577)
T 2ymu_A          504 LTGHSSSVRGVAFSPDGQTIASASDDK-----------------------TVKLWNR-NGQL---LQTLTGHSSSVWGVA  556 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTS-----------------------EEEEECT-TSCE---EEEEECCSSCEEEEE
T ss_pred             EeCCCCCEEEEEEcCCCCEEEEEECcC-----------------------EEEEEeC-CCCE---EEEEcCCCCCEEEEE
Confidence            778999999999999999888765411                       2333331 1111   111112344667889


Q ss_pred             EecCCCEEEEE
Q 004785          311 FVRDDERISLQ  321 (730)
Q Consensus       311 FSpDg~rI~~~  321 (730)
                      |+||++.|+..
T Consensus       557 fs~dg~~l~s~  567 (577)
T 2ymu_A          557 FSPDGQTIASA  567 (577)
T ss_dssp             ECTTSSCEEEE
T ss_pred             EcCCCCEEEEE
Confidence            99999998863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.5e-21  Score=203.52  Aligned_cols=240  Identities=10%  Similarity=0.043  Sum_probs=183.1

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      +....+..|++++.|+.|++||..++    .+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...
T Consensus        39 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~  117 (369)
T 3zwl_B           39 KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVP  117 (369)
T ss_dssp             EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSC
T ss_pred             EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCC
Confidence            33457789999999999999998876    477899999999999999999999999999999999999998888 8889


Q ss_pred             cEEEEEccCCCCEEEEEeCC-----CcEEEEECCCCeE------------EEEecCCC--CeEEEEEcCCCCEEEEEECC
Q 004785          152 PWVVRFHPLNPTIIASGSLD-----HEVRLWNASTAEC------------IGSRDFYR--PIASIAFHASGELLAVASGH  212 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~D-----gtVrLWDl~tg~~------------i~~l~h~~--~V~sVafSPdG~~LAsgSdd  212 (730)
                      |.+++|+| +++++++++.+     +.|++||+.++..            .....+..  .+.+++|+|++++|++++.+
T Consensus       118 v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  196 (369)
T 3zwl_B          118 VKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD  196 (369)
T ss_dssp             EEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred             eEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence            99999999 99999999998     9999999986532            11123444  89999999999999999854


Q ss_pred             -eEEEEEcCCC-ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc--C-C----
Q 004785          213 -KLYIWRYNMR-EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR--Y-P----  278 (730)
Q Consensus       213 -~I~VWDl~t~-~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~--~-p----  278 (730)
                       .|++||+++. ...   ..+..|...|.+++|+|+++++++++.     +|++........+........  + +    
T Consensus       197 g~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (369)
T 3zwl_B          197 GKISKYDVSNNYEYV---DSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEF  273 (369)
T ss_dssp             SEEEEEETTTTTEEE---EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSE
T ss_pred             CEEEEEECCCCcEeE---EEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCce
Confidence             5999999884 432   366778999999999999998887654     788876665544431111000  0 0    


Q ss_pred             --------------------CCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEec
Q 004785          279 --------------------PPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       279 --------------------~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                                          ...+.+|+..........   .....++..+.|+||++.++....
T Consensus       274 l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV---QGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             EEEEECCC-------------CEEEEEETTTCCEEEEE---ECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe---ecccCcEEEEEECCCCCEEEEEcC
Confidence                                003555554444333222   223446668999999998887433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=4.7e-22  Score=204.06  Aligned_cols=192  Identities=16%  Similarity=0.151  Sum_probs=155.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCC-------
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTG-------  139 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg-------  139 (730)
                      ....+..|++++.|+.|++||..++        .+.+|...|++++|+|  |+++|++++.|+.|++||+.++       
T Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~   98 (351)
T 3f3f_A           19 YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR   98 (351)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC
T ss_pred             EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc
Confidence            3457789999999999999998764        2468999999999999  6999999999999999999887       


Q ss_pred             --eEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCCeE-------------------------------
Q 004785          140 --SCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC-------------------------------  184 (730)
Q Consensus       140 --~~l~~l~gH~~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~-------------------------------  184 (730)
                        +.+..+.+|...|.+++|+| +  ++++++++.|+.|++||+++++.                               
T Consensus        99 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (351)
T 3f3f_A           99 RWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP  177 (351)
T ss_dssp             SEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC
T ss_pred             CcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc
Confidence              66888899999999999999 7  89999999999999999876531                               


Q ss_pred             -----------------------------EEEe-cCCCCeEEEEEcCCC----CEEEEEECC-eEEEEEcCCCcc-----
Q 004785          185 -----------------------------IGSR-DFYRPIASIAFHASG----ELLAVASGH-KLYIWRYNMREE-----  224 (730)
Q Consensus       185 -----------------------------i~~l-~h~~~V~sVafSPdG----~~LAsgSdd-~I~VWDl~t~~~-----  224 (730)
                                                   +..+ .|...|.+++|+|++    ++|++++.+ .|++||++....     
T Consensus       178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  257 (351)
T 3f3f_A          178 SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE  257 (351)
T ss_dssp             CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------
T ss_pred             CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC
Confidence                                         1112 377899999999998    899999955 499999986421     


Q ss_pred             --------------------------------------ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785          225 --------------------------------------TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       225 --------------------------------------~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s  261 (730)
                                                            ......+..|...|++++|+|++++|++++.     +|++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          258 ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             ---------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence                                                  0112345678899999999999998887764     666665


Q ss_pred             CCcceeEe
Q 004785          262 SESSLTLA  269 (730)
Q Consensus       262 ~~~~~~l~  269 (730)
                      ......+.
T Consensus       338 ~~~~~~~~  345 (351)
T 3f3f_A          338 SNEFKCMS  345 (351)
T ss_dssp             TSCEEEEE
T ss_pred             Ccchhhee
Confidence            54444443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.90  E-value=1.9e-21  Score=210.31  Aligned_cols=192  Identities=11%  Similarity=0.140  Sum_probs=152.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC---------------CCCCCC------------CCeEEEEECCCC--CEEEEEeC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC---------------PLSPPP------------RSTIAAAFSPDG--KTLASTHG  127 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~---------------~L~gH~------------~~Vt~lafSPDG--~~LaSgS~  127 (730)
                      ....+..|++++.|+.|++|+..++               .+.+|.            ..|++++|+|++  .+|++++.
T Consensus        36 ~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~  115 (447)
T 3dw8_B           36 FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN  115 (447)
T ss_dssp             ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCC
Confidence            3457789999999999999998753               356888            889999999998  79999999


Q ss_pred             CCeEEEEECCCCeEE---------------------------------------EE-EecCCCCcEEEEEccCCCCEEEE
Q 004785          128 DHTVKIIDCQTGSCL---------------------------------------KV-LHGHRRTPWVVRFHPLNPTIIAS  167 (730)
Q Consensus       128 DgtVrVWDl~tg~~l---------------------------------------~~-l~gH~~~V~sVafSP~dg~lLaS  167 (730)
                      |++|++||+.+++..                                       +. +.+|...|.+++|+| ++++|++
T Consensus       116 d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s  194 (447)
T 3dw8_B          116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLS  194 (447)
T ss_dssp             SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEE
T ss_pred             CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEE
Confidence            999999999765432                                       12 368999999999999 8999999


Q ss_pred             EeCCCcEEEEECCC-CeEEEEe--------cCCCCeEEEEEcCCC-CEEEEEECCe-EEEEEcCCCcccc-CCeEEecCC
Q 004785          168 GSLDHEVRLWNAST-AECIGSR--------DFYRPIASIAFHASG-ELLAVASGHK-LYIWRYNMREETS-SPRIVLRTR  235 (730)
Q Consensus       168 gS~DgtVrLWDl~t-g~~i~~l--------~h~~~V~sVafSPdG-~~LAsgSdd~-I~VWDl~t~~~~~-~~~~l~~h~  235 (730)
                      + .|++|++||+.+ ++.+..+        .|...|.+++|+|++ ++|++++.++ |++||+++++... ....+..|.
T Consensus       195 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  273 (447)
T 3dw8_B          195 A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE  273 (447)
T ss_dssp             E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-
T ss_pred             e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCC
Confidence            8 799999999994 4444432        588899999999999 8999999554 9999999877421 123555665


Q ss_pred             C------------CeEEEEEccCCCeEEEEEe----eCCccC-CCcceeEec
Q 004785          236 R------------SLRAVHFHPHAAPLLLTAE----VNDLDS-SESSLTLAT  270 (730)
Q Consensus       236 ~------------~V~sVaFSPdG~~Llatgs----vwdl~s-~~~~~~l~t  270 (730)
                      .            .|.+++|+|+|++|++++.    +|++.. ......+..
T Consensus       274 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~  325 (447)
T 3dw8_B          274 DPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQV  325 (447)
T ss_dssp             ----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEES
T ss_pred             CccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeec
Confidence            4            8999999999998887654    888875 544444443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.90  E-value=2.7e-22  Score=216.38  Aligned_cols=175  Identities=18%  Similarity=0.234  Sum_probs=149.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECC-CCeEEEEEecC
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGH  148 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~---------L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH  148 (730)
                      .+..|++++.|++|++||+.++.         ..+|...|.++.|++ ++++|++|+.|++|++||++ .++.+..+.+|
T Consensus       169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h  248 (380)
T 3iz6_a          169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH  248 (380)
T ss_dssp             SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC
T ss_pred             CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc
Confidence            35679999999999999998763         268999999999987 89999999999999999998 45778899999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC--------CCeEEEEEcCCCCEEEEEECC-eEEEEEc
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--------RPIASIAFHASGELLAVASGH-KLYIWRY  219 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~--------~~V~sVafSPdG~~LAsgSdd-~I~VWDl  219 (730)
                      .+.|++++|+| ++++|++++.|++|++||+++++.+..+...        ..|.+++|+|+|++|++|+.+ .|++||+
T Consensus       249 ~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          249 EGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             CCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            99999999999 9999999999999999999999988776421        248999999999999999855 4999999


Q ss_pred             CCCccccCC-eEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          220 NMREETSSP-RIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       220 ~t~~~~~~~-~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..++..... .....|...|.+++|+|||++|++++.
T Consensus       328 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  364 (380)
T 3iz6_a          328 LLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW  364 (380)
T ss_dssp             TTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred             CCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence            887654311 112568999999999999997776653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.89  E-value=2.1e-22  Score=216.21  Aligned_cols=178  Identities=15%  Similarity=0.105  Sum_probs=151.9

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEE--e
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVL--H  146 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l--~  146 (730)
                      .++...++..|++++.|++|++||..++    .+.+|...|++++|++++. +|++++.|++|++||+++++.+..+  .
T Consensus       144 ~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence            3444567889999999999999999886    4789999999999999875 7899999999999999998877655  4


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCC-CEEEEEEC-CeEEEEEcCCCc
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASG-ELLAVASG-HKLYIWRYNMRE  223 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG-~~LAsgSd-d~I~VWDl~t~~  223 (730)
                      .|...+.+++|+|+++.+|++|+.|+.|++||+++++.+..+. |...|.+++|+|++ ++|++++. +.|+|||+++++
T Consensus       224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            5677899999999678899999999999999999998887764 88899999999998 57899985 459999999886


Q ss_pred             cccCCeEEecCCCCeEEEEEcc-CCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSP-dG~~Llatgs  255 (730)
                      ...    ..+|...|++|+|+| |+++|++++.
T Consensus       304 ~~~----~~~H~~~V~~vafsP~d~~~l~s~s~  332 (357)
T 4g56_B          304 VFR----DLSHRDFVTGVAWSPLDHSKFTTVGW  332 (357)
T ss_dssp             EEE----ECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             EeE----ECCCCCCEEEEEEeCCCCCEEEEEcC
Confidence            543    568999999999999 6776666553

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.4e-21  Score=208.93  Aligned_cols=197  Identities=12%  Similarity=0.162  Sum_probs=163.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCC----C----CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCe-----
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKY----C----PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGS-----  140 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t----~----~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~-----  140 (730)
                      ++....+..|++++.|+.|++||...    .    .+.+|...|++++|+|+ +++|++++.|+.|++||+.+++     
T Consensus        73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc
Confidence            33455778999999999999999987    1    47789999999999998 8999999999999999999886     


Q ss_pred             -EEE---EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-------CCCeEEEEEcCCC-CEEEE
Q 004785          141 -CLK---VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-------YRPIASIAFHASG-ELLAV  208 (730)
Q Consensus       141 -~l~---~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-------~~~V~sVafSPdG-~~LAs  208 (730)
                       ...   .+.+|...|.+++|+|+++.++++++.|+.|++||+++++.+..+..       ...|.+++|+|++ .+|++
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             ccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence             332   34679999999999994489999999999999999999998887753       6789999999998 58888


Q ss_pred             EECC----eEEEEEcCCCccccCCeEEe-cCCCCeEEEEEcc-CCCeEEEEEe-----eCCccCCCcceeEeccCC
Q 004785          209 ASGH----KLYIWRYNMREETSSPRIVL-RTRRSLRAVHFHP-HAAPLLLTAE-----VNDLDSSESSLTLATSPG  273 (730)
Q Consensus       209 gSdd----~I~VWDl~t~~~~~~~~~l~-~h~~~V~sVaFSP-dG~~Llatgs-----vwdl~s~~~~~~l~t~sG  273 (730)
                      ++++    .|++||+++....  ...+. .|...|.+++|+| +++++++++.     +|++...+....+..+.+
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~  306 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTP--LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN  306 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSC--SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred             EECCCCCceEEEEeCCCCCCC--cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence            8854    7999999986431  23455 7899999999999 8887777664     888887766666555443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.89  E-value=7.7e-21  Score=196.07  Aligned_cols=216  Identities=11%  Similarity=0.081  Sum_probs=171.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC----C-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe--EEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCP----L-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLK  143 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L-----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~--~l~  143 (730)
                      .+....+..|++++ |+.|++||..+..    +     .+|...|.+++|+|++++|++++.|+.|++||+.+++  ...
T Consensus        57 ~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  135 (337)
T 1gxr_A           57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee
Confidence            33345778888888 9999999987642    2     2789999999999999999999999999999999887  667


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t  221 (730)
                      .+..|...|.+++|+| +++++++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.+ .|++||+++
T Consensus       136 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  214 (337)
T 1gxr_A          136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence            7889999999999999 99999999999999999999999888765 78899999999999999999954 599999998


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~  301 (730)
                      ++...    ...+...+.+++|+|+++++++++...                       .+.+++........    ...
T Consensus       215 ~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~~~-----------------------~i~~~~~~~~~~~~----~~~  263 (337)
T 1gxr_A          215 GRQLQ----QHDFTSQIFSLGYCPTGEWLAVGMESS-----------------------NVEVLHVNKPDKYQ----LHL  263 (337)
T ss_dssp             TEEEE----EEECSSCEEEEEECTTSSEEEEEETTS-----------------------CEEEEETTSSCEEE----ECC
T ss_pred             CceEe----eecCCCceEEEEECCCCCEEEEEcCCC-----------------------cEEEEECCCCCeEE----EcC
Confidence            86543    346788999999999999877765311                       23333322222111    112


Q ss_pred             CCCCceeeeEecCCCEEEEEec
Q 004785          302 ITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       302 ~slpil~p~FSpDg~rI~~~~~  323 (730)
                      ...++..+.|++|++.++....
T Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEET
T ss_pred             CccceeEEEECCCCCEEEEecC
Confidence            2345667899999998887443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=1.4e-21  Score=203.99  Aligned_cols=241  Identities=17%  Similarity=0.172  Sum_probs=180.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----C-----CCCCCCeEEEEECCC----CCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----L-----SPPPRSTIAAAFSPD----GKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L-----~gH~~~Vt~lafSPD----G~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (730)
                      +...++++..++.|++||..++.    +     ..|...|++++|+|+    +++|++++.|+.|++||+.+++.+..+.
T Consensus        33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred             CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence            45567777777799999988652    1     237788999999998    6799999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCC
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASGH-KLYIWRYNM  221 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t  221 (730)
                      +|...|.+++|+|.+++++++++.|++|++||+++++.+..+    .|...|.+++|+|++++|++++.+ .|++||+++
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            999999999999978899999999999999999999988886    588999999999999999999954 599999987


Q ss_pred             CccccC-------------------------CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCc-------
Q 004785          222 REETSS-------------------------PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSES-------  264 (730)
Q Consensus       222 ~~~~~~-------------------------~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~-------  264 (730)
                      ++....                         ......|...|.+++|+  ++++++++.     +|++.....       
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  270 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP  270 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc
Confidence            654320                         01122388999999999  666666543     777765433       


Q ss_pred             -------ceeEeccCC-------------cc---cCCCCeEEEecCCCCCCCC-cccccCCC--CCCceeeeEecCCCEE
Q 004785          265 -------SLTLATSPG-------------YW---RYPPPVICMAGAHSSSHPG-LAEEVPLI--TPPFLRPSFVRDDERI  318 (730)
Q Consensus       265 -------~~~l~t~sG-------------~~---~~p~~~V~l~d~~s~d~~~-L~~~~~~~--slpil~p~FSpDg~rI  318 (730)
                             ...+..+.+             ..   ......+.+|+........ ........  ..++..++|++|++.|
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  350 (366)
T 3k26_A          271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL  350 (366)
T ss_dssp             TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence                   111111111             10   0123467788876654332 11122222  4567789999999998


Q ss_pred             EEEe
Q 004785          319 SLQH  322 (730)
Q Consensus       319 ~~~~  322 (730)
                      +...
T Consensus       351 ~s~~  354 (366)
T 3k26_A          351 IAVC  354 (366)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1e-21  Score=207.90  Aligned_cols=179  Identities=22%  Similarity=0.286  Sum_probs=141.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC----C
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----G  139 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t----g  139 (730)
                      ++....+..|++++.|++|++||....           .+.+|...|.+++|+|+|++|++|+.|++|++||+..    .
T Consensus        64 v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe
Confidence            334456789999999999999998421           3679999999999999999999999999999999943    3


Q ss_pred             eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC--eEEEEe-cCCCCeEEEEEcCC--CCEEEEEECC-e
Q 004785          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA--ECIGSR-DFYRPIASIAFHAS--GELLAVASGH-K  213 (730)
Q Consensus       140 ~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~i~~l-~h~~~V~sVafSPd--G~~LAsgSdd-~  213 (730)
                      +++..+.+|...|.+++|+| ++.+|++++.|++|++||+.++  +++..+ .|...|.+++|+|+  +.+|++++.+ .
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             EEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            56788999999999999999 8999999999999999999876  455555 58899999999999  7789999955 5


Q ss_pred             EEEEEcCCCccc-----cCCeEEec-CCCCeEEEEEccCCCeEEEEEe
Q 004785          214 LYIWRYNMREET-----SSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       214 I~VWDl~t~~~~-----~~~~~l~~-h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |+|||++.....     .....+.. |...|++++|++++ ++++++.
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~  269 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA  269 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC
Confidence            999999764211     00112223 88899999999776 4666553

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.89  E-value=2.2e-21  Score=201.42  Aligned_cols=150  Identities=21%  Similarity=0.376  Sum_probs=136.6

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST  181 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t  181 (730)
                      .+.+|...|++++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+| ++++|++++.|+.|++||+.+
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~   96 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSS   96 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCC
Confidence            3678999999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             CeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          182 AECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       182 g~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ++.+..+. |...|.+++|+|++++|++++.+ .|++||+++++...   .+..|...|.+++|+|+++++++++.
T Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            99887764 88899999999999999999955 59999999887543   56778999999999999997776653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=1.6e-20  Score=194.83  Aligned_cols=241  Identities=15%  Similarity=0.160  Sum_probs=183.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      +.+..|++++.|++|++||+...         .+.+|...|.+++|+|||++|++++.|+.|++|+............+.
T Consensus        49 ~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~  128 (340)
T 4aow_A           49 QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT  128 (340)
T ss_dssp             TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCC
Confidence            45679999999999999998653         367899999999999999999999999999999999999998898999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEcCCC--CEEEEEEC-CeEEEEEcCCCcc
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHASG--ELLAVASG-HKLYIWRYNMREE  224 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafSPdG--~~LAsgSd-d~I~VWDl~t~~~  224 (730)
                      ..+..+.+++ ++.++++++.|+.+++||+........  ..|...+..++|++++  .++++++. +.|++||+++.+.
T Consensus       129 ~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~  207 (340)
T 4aow_A          129 KDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL  207 (340)
T ss_dssp             SCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred             CceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence            9999999999 889999999999999999987665443  3478899999999876  46777775 4599999998876


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc--C----------CCCeEEEecC
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR--Y----------PPPVICMAGA  287 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~--~----------p~~~V~l~d~  287 (730)
                      ..   .+.+|...|++++|+|+++++++++.     +|++........+........  +          ....+.+|+.
T Consensus       208 ~~---~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~  284 (340)
T 4aow_A          208 KT---NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDL  284 (340)
T ss_dssp             EE---EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEET
T ss_pred             ee---EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEEC
Confidence            44   67789999999999999998877654     788776555444332211100  0          1234566665


Q ss_pred             CCCCCCCc------ccccCCCCCCceeeeEecCCCEEEEEec
Q 004785          288 HSSSHPGL------AEEVPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       288 ~s~d~~~L------~~~~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                      ........      ..........+..++|+||++.|+....
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          285 EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             TTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence            44322111      1112233456678999999999887443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.89  E-value=1.3e-21  Score=211.11  Aligned_cols=174  Identities=18%  Similarity=0.235  Sum_probs=151.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEEE--
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKVL--  145 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~l--  145 (730)
                      ++..|++++.|++|++||+.++           .+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..+  
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  172 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP  172 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec
Confidence            7789999999999999998765           255899999999999998 69999999999999999999999999  


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCC-eEEEEEcCCCCEEEEE---E-CCeEEEEE
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRP-IASIAFHASGELLAVA---S-GHKLYIWR  218 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~-V~sVafSPdG~~LAsg---S-dd~I~VWD  218 (730)
                      .+|...|.+++|+| ++++|++++.|+.|++||+++++.+..+  .|.+. +..+.|+|+|++|++|   + ++.|++||
T Consensus       173 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd  251 (402)
T 2aq5_A          173 DVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWD  251 (402)
T ss_dssp             TTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEE
T ss_pred             CCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEc
Confidence            88999999999999 9999999999999999999999988876  46554 8999999999999999   4 44599999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +++.+... ......+...+..++|+|+++++++++.
T Consensus       252 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g~  287 (402)
T 2aq5_A          252 TKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCGK  287 (402)
T ss_dssp             TTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEET
T ss_pred             CccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEEc
Confidence            98876422 1233457788999999999998877663

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.89  E-value=5.8e-21  Score=202.59  Aligned_cols=184  Identities=16%  Similarity=0.212  Sum_probs=147.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---c
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---G  147 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~---g  147 (730)
                      .+....+..+++++.|++|++||+.++    .+.+|...|.+++|+|++++|++++.|++|++||+... ....+.   +
T Consensus        82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~  160 (343)
T 2xzm_R           82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKEN  160 (343)
T ss_dssp             EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTS
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccC
Confidence            334457789999999999999999876    36799999999999999999999999999999999743 343433   7


Q ss_pred             CCCCcEEEEEccCCC----------CEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEE
Q 004785          148 HRRTPWVVRFHPLNP----------TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLY  215 (730)
Q Consensus       148 H~~~V~sVafSP~dg----------~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~  215 (730)
                      |...|.+++|+| ++          .++++++.|++|++||.. ++.... ..|...|.+++|+|+|++|++++. +.|+
T Consensus       161 ~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          161 HSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             CSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             CCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence            889999999999 54          789999999999999954 454444 468899999999999999999995 4599


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe----eCCccCCCc
Q 004785          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE----VNDLDSSES  264 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs----vwdl~s~~~  264 (730)
                      |||+......   .....+...|.+++|+|++.+++++..    +|++.....
T Consensus       239 iwd~~~~~~~---~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~  288 (343)
T 2xzm_R          239 IWDILNLTYP---QREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK  288 (343)
T ss_dssp             EEESSCCSSC---SEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCS
T ss_pred             EEECCCCccc---ceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCC
Confidence            9999554432   133345667999999999986654432    677665443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=2e-22  Score=219.00  Aligned_cols=234  Identities=12%  Similarity=0.107  Sum_probs=156.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECC--------CCCEEEEEeCCCeEEEEECCCCeE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSP--------DGKTLASTHGDHTVKIIDCQTGSC  141 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSP--------DG~~LaSgS~DgtVrVWDl~tg~~  141 (730)
                      ..+..|++++.|++|++||...+         .+.+|.+.|++++|+|        |+++||+++.|++|+|||+.++.+
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence            34567999999999999998764         4789999999999997        899999999999999999999988


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--------------------------ecCCCCeE
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--------------------------RDFYRPIA  195 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--------------------------l~h~~~V~  195 (730)
                      +..+.+|...|.+++|+|++.++|++++.|++|++||+++++....                          ..|...+.
T Consensus       179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence            8888889999999999995557899999999999999998765322                          13556788


Q ss_pred             EEEEc-CCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCcc-CCCcceeEeccC
Q 004785          196 SIAFH-ASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLD-SSESSLTLATSP  272 (730)
Q Consensus       196 sVafS-PdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~-s~~~~~~l~t~s  272 (730)
                      ++.|+ |||+.|++++.+ .+++||+..+....   .+..|...+..+.+.|+++.+.......... .......+....
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg  335 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH  335 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence            89986 899999999954 59999998876433   4455666666666666654321111100000 000000011000


Q ss_pred             CcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          273 GYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       273 G~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      +    ....|.+|+..++........   ...++..++|+|||+.|++..
T Consensus       336 s----~Dg~V~lwd~~~~~~~~~~~~---~~~~V~svafspdG~~LA~as  378 (393)
T 4gq1_A          336 S----QHGLIQLINTYEKDSNSIPIQ---LGMPIVDFCWHQDGSHLAIAT  378 (393)
T ss_dssp             T----TTTEEEEEETTCTTCCEEEEE---CSSCEEEEEECTTSSEEEEEE
T ss_pred             C----CCCEEEEEECCCCcEEEEecC---CCCcEEEEEEcCCCCEEEEEe
Confidence            1    123688888777665444332   344778999999999999743

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.88  E-value=8.5e-21  Score=205.31  Aligned_cols=235  Identities=15%  Similarity=0.208  Sum_probs=182.2

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      +..+++++.|+.|++||..++.     ...|...|++++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.++
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence            3568889999999999998874     23488999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCC-CeEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEe
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNAST-AECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVL  232 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~  232 (730)
                      +|++   +++++++.|+.|++||++. +..+.. ..|...|.+++|+|++++|++++. +.|++||+++.+...   .+.
T Consensus       183 ~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~  256 (401)
T 4aez_A          183 SWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKT  256 (401)
T ss_dssp             EEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE---EEC
T ss_pred             EECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE---Eec
Confidence            9954   7999999999999999984 444444 458899999999999999999995 459999999876533   566


Q ss_pred             cCCCCeEEEEEccCCCeEEEEEe--------eCCccCCCcceeEeccCC----------cc-----cCCCCeEEEecCCC
Q 004785          233 RTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPG----------YW-----RYPPPVICMAGAHS  289 (730)
Q Consensus       233 ~h~~~V~sVaFSPdG~~Llatgs--------vwdl~s~~~~~~l~t~sG----------~~-----~~p~~~V~l~d~~s  289 (730)
                      .|...|.+++|+|++..++++++        +|++..+.....+.....          ..     .+....+.+|+..+
T Consensus       257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            78999999999999987877652        778776655444432111          00     01234566666555


Q ss_pred             CCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       290 ~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      +....... ......++..+.|++|++.|+...
T Consensus       337 ~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~s~~  368 (401)
T 4aez_A          337 SGLTKQVD-IPAHDTRVLYSALSPDGRILSTAA  368 (401)
T ss_dssp             TEEEEEEE-EECCSSCCCEEEECTTSSEEEEEC
T ss_pred             ccceeEEE-ecCCCCCEEEEEECCCCCEEEEEe
Confidence            33322221 123345667889999999988743

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.88  E-value=2.6e-21  Score=201.46  Aligned_cols=176  Identities=13%  Similarity=0.177  Sum_probs=144.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCe--EEEEEecCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKVLHGHR  149 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~  149 (730)
                      .+..|++++.|++|++||..++.      +.+|...|.+++|+|+  |.+|++++.|++|++||++++.  ....+.+|.
T Consensus        66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeeccc
Confidence            36899999999999999998652      4679999999999997  8999999999999999998763  246678999


Q ss_pred             CCcEEEEEccCC------------CCEEEEEeCCCcEEEEECCCCe----EEEEe-cCCCCeEEEEEcCCC---CEEEEE
Q 004785          150 RTPWVVRFHPLN------------PTIIASGSLDHEVRLWNASTAE----CIGSR-DFYRPIASIAFHASG---ELLAVA  209 (730)
Q Consensus       150 ~~V~sVafSP~d------------g~lLaSgS~DgtVrLWDl~tg~----~i~~l-~h~~~V~sVafSPdG---~~LAsg  209 (730)
                      ..|.+++|+|+.            +++|++|+.|++|++||+++++    ....+ .|...|.+++|+|++   ++|+++
T Consensus       146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence            999999999932            5799999999999999998765    34444 488999999999995   799999


Q ss_pred             ECC-eEEEEEcCCCccccCCeEE--ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          210 SGH-KLYIWRYNMREETSSPRIV--LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       210 Sdd-~I~VWDl~t~~~~~~~~~l--~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +.+ .|+|||++..........+  ..|...|.+++|+|+|++|++++.
T Consensus       226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~  274 (297)
T 2pm7_B          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG  274 (297)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred             ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence            955 5999999875321101122  357789999999999998887765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.88  E-value=2.6e-20  Score=203.04  Aligned_cols=234  Identities=14%  Similarity=0.176  Sum_probs=183.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      .+..|+.+ .|++|++||..+++      +.+|...|++++|+|||++|++|+.|++|+|||+.+++.+..+.+|...+.
T Consensus       115 ~~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~  193 (420)
T 4gga_A          115 SGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG  193 (420)
T ss_dssp             TTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE
Confidence            34456655 49999999999873      457889999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeE-EEE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCe
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAEC-IGS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPR  229 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~-~~~  229 (730)
                      +++|+   +.++++|+.|+.+++||...... +.. ..|...+..+.|+|+|++|++++.++ |++||...++... ...
T Consensus       194 ~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~  270 (420)
T 4gga_A          194 SLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ  270 (420)
T ss_dssp             EEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred             EEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence            98885   48999999999999999987543 333 45889999999999999999999555 9999998875432 234


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe--------eCCccCCCcceeEeccCCcc---------------cCCCCeEEEec
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPGYW---------------RYPPPVICMAG  286 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs--------vwdl~s~~~~~~l~t~sG~~---------------~~p~~~V~l~d  286 (730)
                      ....|...|.+++|+|++..+++++.        +|++..+.....+.......               .+....+.+|+
T Consensus       271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd  350 (420)
T 4gga_A          271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWK  350 (420)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred             eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEE
Confidence            56678899999999999887776542        78877665544433321111               01235688888


Q ss_pred             CCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          287 AHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       287 ~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      ..+......   ..+...+++.++|+|||+.|+.
T Consensus       351 ~~~~~~v~~---l~gH~~~V~~l~~spdg~~l~S  381 (420)
T 4gga_A          351 YPTMAKVAE---LKGHTSRVLSLTMSPDGATVAS  381 (420)
T ss_dssp             TTTCCEEEE---ECCCSSCEEEEEECTTSSCEEE
T ss_pred             CCCCcEEEE---EcCCCCCEEEEEEcCCCCEEEE
Confidence            766554333   3345668889999999999886

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=4.2e-21  Score=200.07  Aligned_cols=227  Identities=15%  Similarity=0.152  Sum_probs=168.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEE------ECCCCCEEEEEeCCCeEEEEECCCCe-EEEEEecC
Q 004785           81 RRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAA------FSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLHGH  148 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~la------fSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH  148 (730)
                      +..|++++.|+.|++||..++.     +.+|...|.++.      |+|++++|++++.|+.|++||+.+++ .+..+..|
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence            6899999999999999998653     678999999995      57899999999999999999999987 67888766


Q ss_pred             CC----CcEEEE----EccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcC---CCCEEEEEEC-CeEEE
Q 004785          149 RR----TPWVVR----FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA---SGELLAVASG-HKLYI  216 (730)
Q Consensus       149 ~~----~V~sVa----fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSP---dG~~LAsgSd-d~I~V  216 (730)
                      .+    .|.+++    |+| +++++++++.|+.|++||+++++......+...|.+++|+|   ++++|++++. +.|++
T Consensus       160 ~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred             CCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence            65    788998    678 89999999999999999999999888888999999999999   9999999985 55999


Q ss_pred             EEcCCCccccCCe--EEecCCCCeEEEEEccCCCe-EEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCC
Q 004785          217 WRYNMREETSSPR--IVLRTRRSLRAVHFHPHAAP-LLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (730)
Q Consensus       217 WDl~t~~~~~~~~--~l~~h~~~V~sVaFSPdG~~-Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~  288 (730)
                      ||+++++......  ....|...|++++|+|+++. +++++.     +|++.......... ..|.........      
T Consensus       239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~g~~~~~~~~~------  311 (357)
T 3i2n_A          239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD-SEGIEMGVAGSV------  311 (357)
T ss_dssp             EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC-TTSCCCCCCCEE------
T ss_pred             EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc-CCCCcccccccc------
Confidence            9998876543111  22379999999999999994 444443     56665433321111 011100000000      


Q ss_pred             CCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       289 s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                           ...........++..++|++|++.+++
T Consensus       312 -----~~~~~~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          312 -----SLLQNVTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             -----EEEEEEECCSSCEEEEEECSSSTTEEE
T ss_pred             -----ceeeccccCCCCeeEEEEcCCCCeEEE
Confidence                 011111223446678899999999885

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.88  E-value=3.9e-21  Score=215.53  Aligned_cols=174  Identities=27%  Similarity=0.390  Sum_probs=151.7

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      ++...++..|++++.|+.|++||....   .+.+|...|++++|+||+++|++++.|++|++||. +++.+..+.+|...
T Consensus       391 ~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~  469 (577)
T 2ymu_A          391 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS  469 (577)
T ss_dssp             EEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCC
Confidence            344567889999999999999997544   46789999999999999999999999999999996 67788999999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCe
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPR  229 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~  229 (730)
                      |.+++|+| +++++++++.|++|++||. +++++..+ .|...|++++|+|||++|+++++++ |+|||+. ++..   .
T Consensus       470 v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~---~  543 (577)
T 2ymu_A          470 VRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL---Q  543 (577)
T ss_dssp             EEEEEECT-TSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEE---E
T ss_pred             EEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEE---E
Confidence            99999999 9999999999999999996 56666654 5889999999999999999999655 9999964 4432   3


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .+.+|...|++++|+|||++|++++.
T Consensus       544 ~~~~h~~~v~~~~fs~dg~~l~s~~~  569 (577)
T 2ymu_A          544 TLTGHSSSVWGVAFSPDGQTIASASS  569 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            67889999999999999998887664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.88  E-value=9.1e-21  Score=199.09  Aligned_cols=175  Identities=15%  Similarity=0.152  Sum_probs=147.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE--EecC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV--LHGH  148 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~--l~gH  148 (730)
                      ...++..|++++.|+.|++||..++      .+.+|...|.+++|+|++++|++++.|+.|++||+.+++....  +..|
T Consensus        16 ~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~   95 (372)
T 1k8k_C           16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI   95 (372)
T ss_dssp             ECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred             ECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecC
Confidence            3456788999999999999998876      3568999999999999999999999999999999998875544  3679


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE---EEE--ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC-
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC---IGS--RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNM-  221 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---i~~--l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t-  221 (730)
                      ...|.+++|+| +++++++++.|+.|++||+..++.   ...  ..|...|.+++|+|++++|++++. +.|++||++. 
T Consensus        96 ~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  174 (372)
T 1k8k_C           96 NRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  174 (372)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             CCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccc
Confidence            99999999999 899999999999999999998762   222  347889999999999999999995 4599999752 


Q ss_pred             -----------------CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          222 -----------------REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       222 -----------------~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                                       ++.   ...+..|...|.+++|+|+++++++++.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~  222 (372)
T 1k8k_C          175 EVEERPAPTPWGSKMPFGEL---MFESSSSCGWVHGVCFSANGSRVAWVSH  222 (372)
T ss_dssp             TTSCCCCCBTTBSCCCTTCE---EEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccccccccccccccchhhh---eEecCCCCCeEEEEEECCCCCEEEEEeC
Confidence                             222   2245578889999999999997777653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.88  E-value=1.6e-20  Score=205.42  Aligned_cols=233  Identities=17%  Similarity=0.203  Sum_probs=180.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      .+..|++++.|++|++||..++    .+.+|.+.|.+++|++++ +|++|+.|++|++||+.+++.+..+.+|...|.++
T Consensus       131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l  209 (464)
T 3v7d_B          131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL  209 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence            4679999999999999999876    477999999999999988 99999999999999999999999999999999999


Q ss_pred             EEcc-CCCCEEEEEeCCCcEEEEECCCCeEE-----------------------E-EecCCCCeEEEEEcCCCCEEEEEE
Q 004785          156 RFHP-LNPTIIASGSLDHEVRLWNASTAECI-----------------------G-SRDFYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       156 afSP-~dg~lLaSgS~DgtVrLWDl~tg~~i-----------------------~-~l~h~~~V~sVafSPdG~~LAsgS  210 (730)
                      +|++ .++.++++++.|++|++||+.+++..                       . ...|...+.++  ++++++|++++
T Consensus       210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~  287 (464)
T 3v7d_B          210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS  287 (464)
T ss_dssp             EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE
T ss_pred             EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe
Confidence            9995 26789999999999999999987532                       1 22466667665  67899999999


Q ss_pred             CC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc--------
Q 004785          211 GH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR--------  276 (730)
Q Consensus       211 dd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~--------  276 (730)
                      .+ .|++||+++++...   .+..|...|.+++|+|+++++++++.     +|++..+.....+..+.+.+.        
T Consensus       288 ~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  364 (464)
T 3v7d_B          288 YDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF  364 (464)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSE
T ss_pred             CCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCE
Confidence            54 59999999887644   66789999999999999998887765     788776665555543333221        


Q ss_pred             ----CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          277 ----YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       277 ----~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                          .....+.+|+...........    ........+|++|++.++...
T Consensus       365 l~s~s~dg~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          365 LVSAAADGSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec
Confidence                012456677765543222111    122334678999999888743

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.2e-21  Score=201.50  Aligned_cols=238  Identities=13%  Similarity=0.163  Sum_probs=179.5

Q ss_pred             ecCCC-EEEEEeCCCeEEEEeC----CCCC----------CC----------CCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 004785           78 RDARR-GLASWVEAESLHHLRP----KYCP----------LS----------PPPRSTIAAAFSPDGKTLASTHGDHTVK  132 (730)
Q Consensus        78 ~d~g~-~L~Sgs~DgsIrlWd~----~t~~----------L~----------gH~~~Vt~lafSPDG~~LaSgS~DgtVr  132 (730)
                      ...+. .|++++.|+.|++|+.    .++.          +.          +|...|++++|+|++++|++++.|+.|+
T Consensus        54 s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  133 (425)
T 1r5m_A           54 NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELR  133 (425)
T ss_dssp             CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence            34566 9999999999999999    6543          11          2677999999999999999999999999


Q ss_pred             EEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-CCC---------------eEE
Q 004785          133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRP---------------IAS  196 (730)
Q Consensus       133 VWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~~~---------------V~s  196 (730)
                      +|| .+++.+..+.+|...|.+++|+| +++++++++.|+.|++||+.+++.+..+.. ...               +.+
T Consensus       134 i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (425)
T 1r5m_A          134 LWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD  211 (425)
T ss_dssp             EEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSC
T ss_pred             EEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeE
Confidence            999 77888999999999999999999 999999999999999999999998887653 333               899


Q ss_pred             EEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEecc
Q 004785          197 IAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS  271 (730)
Q Consensus       197 VafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~  271 (730)
                      ++|+|++.+++.+.++.|++||+++++..   ..+..|...|.+++|+|+++++++++.     +|++........+..+
T Consensus       212 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  288 (425)
T 1r5m_A          212 VEWVDDDKFVIPGPKGAIFVYQITEKTPT---GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH  288 (425)
T ss_dssp             CEEEETTEEEEECGGGCEEEEETTCSSCS---EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC
T ss_pred             EEEcCCCEEEEEcCCCeEEEEEcCCCcee---eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC
Confidence            99999876444444666999999987653   366789999999999999998877664     7887766655555433


Q ss_pred             CCccc-------------CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEec
Q 004785          272 PGYWR-------------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       272 sG~~~-------------~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                      .+...             .....+.+|+...........   ....++..+.|+||++.|++...
T Consensus       289 ~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~  350 (425)
T 1r5m_A          289 SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI---VDGVPIFAGRISQDGQKYAVAFM  350 (425)
T ss_dssp             SSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE---CTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc---cCCccEEEEEEcCCCCEEEEEEC
Confidence            32211             012456667765544332222   23446678899999999887543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.88  E-value=7.6e-22  Score=209.35  Aligned_cols=179  Identities=16%  Similarity=0.148  Sum_probs=144.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---CLKV  144 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---~l~~  144 (730)
                      ++....+..|++++.|++|++||..++.       +.+|...|.+++|+|++++|++++.|+.|++||+++++   ....
T Consensus        61 ~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  140 (377)
T 3dwl_C           61 VDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKH  140 (377)
T ss_dssp             EEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeE
Confidence            3444567899999999999999988653       67899999999999999999999999999999999887   4778


Q ss_pred             Eec-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC------------------CCeEEEEecCCCCeEEEEEcCCCCE
Q 004785          145 LHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS------------------TAECIGSRDFYRPIASIAFHASGEL  205 (730)
Q Consensus       145 l~g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~------------------tg~~i~~l~h~~~V~sVafSPdG~~  205 (730)
                      +.+ |...|.+++|+| +++++++++.|++|++||+.                  .++++..+.|...|.+++|+|+|++
T Consensus       141 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  219 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA  219 (377)
T ss_dssp             ECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC
T ss_pred             eecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE
Confidence            888 999999999999 89999999999999999985                  3445555678889999999999999


Q ss_pred             EEEEECC-eEEEEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          206 LAVASGH-KLYIWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       206 LAsgSdd-~I~VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      |++++.+ .|++||+.+++... ....+..|...|.+++|+|+|++++++.
T Consensus       220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  270 (377)
T 3dwl_C          220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY  270 (377)
T ss_dssp             EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred             EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence            9999955 59999999887511 0235778999999999999999665543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.88  E-value=8.2e-20  Score=193.46  Aligned_cols=245  Identities=13%  Similarity=0.100  Sum_probs=184.4

Q ss_pred             EEEec-CCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEE
Q 004785           75 EAGRD-ARRGLASWVEAESLHHLRPKYCPL-----------------SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIID  135 (730)
Q Consensus        75 ~a~~d-~g~~L~Sgs~DgsIrlWd~~t~~L-----------------~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWD  135 (730)
                      ++... .+..|++++.|+.|++||..+...                 .+|...|.+++|+| ++.+|++++.|+.|++||
T Consensus        49 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd  128 (408)
T 4a11_B           49 LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWD  128 (408)
T ss_dssp             EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEE
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEee
Confidence            34444 788999999999999999987521                 35999999999999 788999999999999999


Q ss_pred             CCCCeEEEEEecCCCCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCC-EEEEEEC
Q 004785          136 CQTGSCLKVLHGHRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGE-LLAVASG  211 (730)
Q Consensus       136 l~tg~~l~~l~gH~~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~-~LAsgSd  211 (730)
                      +.+++.+..+. +...+.++.|++.+  +.++++++.|+.|++||+++++.+..+. |...|.+++|+|+++ +|++++.
T Consensus       129 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~  207 (408)
T 4a11_B          129 TNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA  207 (408)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred             CCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC
Confidence            99999888886 77789999999842  3399999999999999999998877765 889999999999999 5888885


Q ss_pred             C-eEEEEEcCCCcccc-------------CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccC
Q 004785          212 H-KLYIWRYNMREETS-------------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSP  272 (730)
Q Consensus       212 d-~I~VWDl~t~~~~~-------------~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~s  272 (730)
                      + .|++||++......             .......|...|.+++|+|+++++++++.     +|++........+....
T Consensus       208 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  287 (408)
T 4a11_B          208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV  287 (408)
T ss_dssp             TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC
T ss_pred             CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc
Confidence            4 59999998765211             01112568889999999999998887765     77777655432221110


Q ss_pred             Cccc-------------------CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEec
Q 004785          273 GYWR-------------------YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       273 G~~~-------------------~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                      ....                   .....+.+|+..++......   .....++..++|+||++.|+....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~  354 (408)
T 4a11_B          288 CNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---KGHYKTVDCCVFQSNFQELYSGSR  354 (408)
T ss_dssp             CCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---CCCSSCEEEEEEETTTTEEEEEET
T ss_pred             cccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---ccCCCeEEEEEEcCCCCEEEEECC
Confidence            0000                   01245677776665543333   234456778999999999887433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.87  E-value=1.3e-20  Score=203.96  Aligned_cols=175  Identities=21%  Similarity=0.307  Sum_probs=154.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      .+..+++++.|+.|++||+...     .+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+
T Consensus       185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence            4568889999999999998743     46789999999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEe--CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCe
Q 004785          155 VRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPR  229 (730)
Q Consensus       155 VafSP~dg~lLaSgS--~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~~~~  229 (730)
                      ++|+|++..++++++  .|+.|++||+.+++.+..+.+...|.+++|+|+|++|++++   ++.|+|||+.+++... ..
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~-~~  343 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK-QV  343 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE-EE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee-EE
Confidence            999996678888876  79999999999999999999999999999999999999864   4559999998865433 23


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .+..|...|.+++|+|+|+++++++.
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeC
Confidence            46689999999999999998777654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.87  E-value=2.2e-20  Score=193.72  Aligned_cols=178  Identities=16%  Similarity=0.166  Sum_probs=154.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDG--KTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG--~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      ....+..|++++.|+.+++||....     .+.+|...|.+++|++++  .++++++.|+.|++||+.+++.+..+.+|.
T Consensus       136 ~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~  215 (340)
T 4aow_A          136 FSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT  215 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC
Confidence            3446778999999999999998754     467899999999999864  578899999999999999999999999999


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccC--
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS--  227 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~--  227 (730)
                      +.|++++|+| ++++|++++.|++|++||+++++.+..+.+...|.++.|+|++.+++.+.++.|+|||++.......  
T Consensus       216 ~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~  294 (340)
T 4aow_A          216 GYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK  294 (340)
T ss_dssp             SCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             CcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecc
Confidence            9999999999 9999999999999999999999999999988999999999999998888888899999987654221  


Q ss_pred             ----CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          228 ----PRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       228 ----~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                          ......|...|++++|+|||++|++++.
T Consensus       295 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             CC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred             ccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence                1123467889999999999998877664

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.7e-21  Score=222.06  Aligned_cols=170  Identities=10%  Similarity=0.033  Sum_probs=143.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC---------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYC---------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKV  144 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~---------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~  144 (730)
                      +..|++++.|++|++||+..+               .+.+|...|++++|+++ ..|++|+.|++|++||++++. ....
T Consensus       225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~  303 (524)
T 2j04_B          225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFY  303 (524)
T ss_dssp             SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred             CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEE
Confidence            568999999999999998754               24679999999999986 489999999999999999774 4567


Q ss_pred             EecCCCCcEEE--EEccCCC-CEEEEEeCCCcEEEEECCCCeEEEEe-cCC--CCeEEEEEcCCCCEEEEEECC-eEEEE
Q 004785          145 LHGHRRTPWVV--RFHPLNP-TIIASGSLDHEVRLWNASTAECIGSR-DFY--RPIASIAFHASGELLAVASGH-KLYIW  217 (730)
Q Consensus       145 l~gH~~~V~sV--afSP~dg-~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~--~~V~sVafSPdG~~LAsgSdd-~I~VW  217 (730)
                      +.+|...|.+|  .|+| ++ ++|+|++.|++|+|||++++++...+ .|.  ..|.+++|+|+++.|++++++ .|++|
T Consensus       304 ~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lw  382 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAV  382 (524)
T ss_dssp             EECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEE
T ss_pred             eecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEE
Confidence            89999999999  5677 66 89999999999999999987765543 233  358899999999999988855 59999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |++++...   ..+.+|...|++|+|+|+|++|++++.
T Consensus       383 d~~~~~~~---~~l~gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          383 PSRAAFAV---HPLVSRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             ETTCTTCC---EEEEECSSCEEEEECCSSCCBCEEEET
T ss_pred             ECcccccc---eeeecCCCceEEEEeCCCCCeEEEEEC
Confidence            99987643   357789999999999999998877665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=1.5e-20  Score=195.82  Aligned_cols=216  Identities=13%  Similarity=0.174  Sum_probs=162.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCC-C-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           81 RRGLASWVEAESLHHLRPKY-C-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t-~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      +..|++++.|+.|++||..+ +     .+.+|...|++++|+|++++|++++.|+.|++||+.+++.+. +.+|...|.+
T Consensus        54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~  132 (368)
T 3mmy_A           54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKT  132 (368)
T ss_dssp             SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEE
T ss_pred             ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEE
Confidence            58999999999999999986 3     366899999999999999999999999999999999998766 5679999999


Q ss_pred             EEE--ccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC-----------------------------------------
Q 004785          155 VRF--HPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-----------------------------------------  191 (730)
Q Consensus       155 Vaf--SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~-----------------------------------------  191 (730)
                      ++|  +| ++.++++++.|+.|++||+++++.+..+...                                         
T Consensus       133 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  211 (368)
T 3mmy_A          133 IHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPL  211 (368)
T ss_dssp             EEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSC
T ss_pred             EEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccc
Confidence            999  88 8889999999999999999988765554322                                         


Q ss_pred             -CCeEEEEEcCCCCE----EEEEEC-CeEEEEEcCCCccccCCeEEecCCC------------CeEEEEEccCCCeEEEE
Q 004785          192 -RPIASIAFHASGEL----LAVASG-HKLYIWRYNMREETSSPRIVLRTRR------------SLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       192 -~~V~sVafSPdG~~----LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~------------~V~sVaFSPdG~~Llat  253 (730)
                       ..+..+++.+++..    +++++. +.|++||++..........+..|..            .|.+++|+|++++++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~  291 (368)
T 3mmy_A          212 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV  291 (368)
T ss_dssp             SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE
T ss_pred             cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE
Confidence             23445555544443    777775 4599999988754223445556654            79999999999988777


Q ss_pred             EeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecC
Q 004785          254 AEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (730)
Q Consensus       254 gsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~  324 (730)
                      +...                       .+.+|+..+......   ......++..++|+||++.|+....+
T Consensus       292 ~~dg-----------------------~i~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          292 GSDG-----------------------RFSFWDKDARTKLKT---SEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             ETTS-----------------------CEEEEETTTTEEEEE---CCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ccCC-----------------------eEEEEECCCCcEEEE---ecCCCCCceEEEECCCCCeEEEEecc
Confidence            6411                       233333332222111   11233466789999999999985543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.87  E-value=9.2e-21  Score=203.59  Aligned_cols=215  Identities=11%  Similarity=0.061  Sum_probs=161.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      ..+..|++++.|+.|++||..+.    .+..| ..+....|++++++|++++.|+.|++||+.+++.+..+.+|.+.|.+
T Consensus        66 ~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~  144 (420)
T 3vl1_A           66 KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITK  144 (420)
T ss_dssp             EEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEE
T ss_pred             ecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEE
Confidence            35678999999999999999875    23444 44556678999999999999999999999999998888999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEe
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL  232 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~  232 (730)
                      ++|+| ++++|++++.|++|++||+.+++.+..+. |...|.+++|+|++++|++++.++ |++||+++++.........
T Consensus       145 ~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  223 (420)
T 3vl1_A          145 LKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE  223 (420)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTT
T ss_pred             EEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCC
Confidence            99999 89999999999999999999998877764 889999999999999999999554 9999999887544111111


Q ss_pred             cCCCCeEEEEE---------------------ccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCC
Q 004785          233 RTRRSLRAVHF---------------------HPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSS  291 (730)
Q Consensus       233 ~h~~~V~sVaF---------------------SPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d  291 (730)
                      .+...|.++.|                     +|+|+++++++..                       ..+.+|+...+.
T Consensus       224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------------------g~i~i~d~~~~~  280 (420)
T 3vl1_A          224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS-----------------------GVITVHNVFSKE  280 (420)
T ss_dssp             BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT-----------------------SCEEEEETTTCC
T ss_pred             CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC-----------------------CeEEEEECCCCc
Confidence            24445555554                     6677665554421                       134444443332


Q ss_pred             CCCcccccCCCCCCceeeeEecCCC-EEEE
Q 004785          292 HPGLAEEVPLITPPFLRPSFVRDDE-RISL  320 (730)
Q Consensus       292 ~~~L~~~~~~~slpil~p~FSpDg~-rI~~  320 (730)
                      ...  ........++..+.|+|+++ .++.
T Consensus       281 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~~  308 (420)
T 3vl1_A          281 QTI--QLPSKFTCSCNSLTVDGNNANYIYA  308 (420)
T ss_dssp             EEE--EECCTTSSCEEEEEECSSCTTEEEE
T ss_pred             eeE--EcccccCCCceeEEEeCCCCCEEEE
Confidence            211  11112334566889999999 6665

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.87  E-value=9.4e-21  Score=202.50  Aligned_cols=216  Identities=16%  Similarity=0.203  Sum_probs=162.8

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC----CeEEEEEecCCCC
Q 004785           82 RGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT----GSCLKVLHGHRRT  151 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t----g~~l~~l~gH~~~  151 (730)
                      ..+++.+.|+.|++||..++.      ...|...|++++|+|++++|++++.|+.|++||+.+    .+.+..+.+|...
T Consensus        36 ~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~  115 (416)
T 2pm9_A           36 TVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS  115 (416)
T ss_dssp             CCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC
T ss_pred             ccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc
Confidence            333334899999999998652      246889999999999999999999999999999987    4578889999999


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCe------EEEE----ecCCCCeEEEEEcCC-CCEEEEEECC-eEEEEEc
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAE------CIGS----RDFYRPIASIAFHAS-GELLAVASGH-KLYIWRY  219 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~------~i~~----l~h~~~V~sVafSPd-G~~LAsgSdd-~I~VWDl  219 (730)
                      |.+++|+|++++++++++.|++|++||+.+++      ....    ..|...|.+++|+|+ +.+|++++.+ .|++||+
T Consensus       116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~  195 (416)
T 2pm9_A          116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDL  195 (416)
T ss_dssp             CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEET
T ss_pred             eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC
Confidence            99999999448999999999999999999886      3332    357889999999999 6899998854 5999999


Q ss_pred             CCCccccCCeEEecC------CCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCC-C
Q 004785          220 NMREETSSPRIVLRT------RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSS-H  292 (730)
Q Consensus       220 ~t~~~~~~~~~l~~h------~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d-~  292 (730)
                      ++++...   .+..+      ...|.+++|+|++..+++++..+...                   ..+.+|+..... .
T Consensus       196 ~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~-------------------~~i~~~d~~~~~~~  253 (416)
T 2pm9_A          196 KAKKEVI---HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND-------------------PSILIWDLRNANTP  253 (416)
T ss_dssp             TTTEEEE---EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS-------------------CCCCEEETTSTTSC
T ss_pred             CCCCcce---EEeccccccccCCceEEEEECCCCCCEEEEEECCCCC-------------------ceEEEEeCCCCCCC
Confidence            9887543   33333      78899999999986555555432100                   134445544332 1


Q ss_pred             CCcccccCCCCCCceeeeEec-CCCEEEEE
Q 004785          293 PGLAEEVPLITPPFLRPSFVR-DDERISLQ  321 (730)
Q Consensus       293 ~~L~~~~~~~slpil~p~FSp-Dg~rI~~~  321 (730)
                      .....  .....++..+.|+| |++.++..
T Consensus       254 ~~~~~--~~~~~~v~~~~~s~~~~~~l~s~  281 (416)
T 2pm9_A          254 LQTLN--QGHQKGILSLDWCHQDEHLLLSS  281 (416)
T ss_dssp             SBCCC--SCCSSCEEEEEECSSCSSCEEEE
T ss_pred             cEEee--cCccCceeEEEeCCCCCCeEEEE
Confidence            11111  02344667899999 77777763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.9e-20  Score=193.85  Aligned_cols=218  Identities=15%  Similarity=0.213  Sum_probs=171.0

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                      +.+|.+.|++++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+.++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Confidence            578999999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEECC------eEEEEEcCCCcccc--------CCeEEecCCC--CeEEEEEccC
Q 004785          183 ECIGSRDFYRPIASIAFHASGELLAVASGH------KLYIWRYNMREETS--------SPRIVLRTRR--SLRAVHFHPH  246 (730)
Q Consensus       183 ~~i~~l~h~~~V~sVafSPdG~~LAsgSdd------~I~VWDl~t~~~~~--------~~~~l~~h~~--~V~sVaFSPd  246 (730)
                      +.+..+.+...+.+++|+|++++|++++++      .|++||+.......        ....+..|..  .+.+++|+|+
T Consensus       107 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (369)
T 3zwl_B          107 QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK  186 (369)
T ss_dssp             CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred             cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence            999998899999999999999999999864      59999998765321        1233444555  8999999999


Q ss_pred             CCeEEEEEe-----eCCccC-CCcceeEeccCCccc--------------CCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004785          247 AAPLLLTAE-----VNDLDS-SESSLTLATSPGYWR--------------YPPPVICMAGAHSSSHPGLAEEVPLITPPF  306 (730)
Q Consensus       247 G~~Llatgs-----vwdl~s-~~~~~~l~t~sG~~~--------------~p~~~V~l~d~~s~d~~~L~~~~~~~slpi  306 (730)
                      ++++++++.     +|++.. ......+..+.+.+.              .....+.+|+...........    ...++
T Consensus       187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~  262 (369)
T 3zwl_B          187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPL  262 (369)
T ss_dssp             GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCc
Confidence            998877654     777775 333333333322211              012456667765544333322    23456


Q ss_pred             eeeeEecCCCEEEEEecCC
Q 004785          307 LRPSFVRDDERISLQHTEH  325 (730)
Q Consensus       307 l~p~FSpDg~rI~~~~~~~  325 (730)
                      ....|+++++.+++...+.
T Consensus       263 ~~~~~~~~~~~l~~~~~~~  281 (369)
T 3zwl_B          263 NTAVITPLKEFIILGGGQE  281 (369)
T ss_dssp             EEEEECSSSSEEEEEECCC
T ss_pred             eeEEecCCCceEEEeecCC
Confidence            6789999999999855443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.8e-20  Score=196.58  Aligned_cols=181  Identities=13%  Similarity=0.164  Sum_probs=150.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCe--EEEEEecCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRR  150 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~~  150 (730)
                      +..|++++.|+.|++||..++      .+.+|...|.+++|+|+  +.+|++++.|+.|++||+.++.  ....+.+|..
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~  148 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  148 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence            789999999999999998876      35689999999999999  9999999999999999998873  4456788999


Q ss_pred             CcEEEEEccC------------CCCEEEEEeCCCcEEEEECCCCeE----EEEe-cCCCCeEEEEEcCC---CCEEEEEE
Q 004785          151 TPWVVRFHPL------------NPTIIASGSLDHEVRLWNASTAEC----IGSR-DFYRPIASIAFHAS---GELLAVAS  210 (730)
Q Consensus       151 ~V~sVafSP~------------dg~lLaSgS~DgtVrLWDl~tg~~----i~~l-~h~~~V~sVafSPd---G~~LAsgS  210 (730)
                      .|.+++|+|.            ++.++++++.|+.|++||+++++.    +..+ .|...|.+++|+|+   +++|++++
T Consensus       149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            9999999995            589999999999999999987643    2333 48889999999999   89999999


Q ss_pred             CC-eEEEEEcCCCccccCCeE--EecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785          211 GH-KLYIWRYNMREETSSPRI--VLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       211 dd-~I~VWDl~t~~~~~~~~~--l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s  261 (730)
                      .+ .|+|||++.+........  ...|...|.+++|+|+|+++++++.     +|++..
T Consensus       229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            54 599999988743211111  2337889999999999998888765     666653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.2e-20  Score=197.28  Aligned_cols=245  Identities=11%  Similarity=0.075  Sum_probs=184.6

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      ..++....+..|++++.|+.|++||....   .+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.
T Consensus       112 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  191 (425)
T 1r5m_A          112 TCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKE  191 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccc
Confidence            33444557889999999999999995433   477899999999999999999999999999999999999999998888


Q ss_pred             CC---------------cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-C
Q 004785          150 RT---------------PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-H  212 (730)
Q Consensus       150 ~~---------------V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd-d  212 (730)
                      ..               +.++.|+| + ..+++++.|+.|++||+.+++.+..+ .|...|.+++|+|++++|++++. +
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          192 TGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             --------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             cCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC
Confidence            77               99999998 4 56889999999999999998877765 58889999999999999999995 4


Q ss_pred             eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc---C-------
Q 004785          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y-------  277 (730)
Q Consensus       213 ~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~-------  277 (730)
                      .|++||+++++..   ..+..|...|.+++|+|++ ++++++.     +|++........+..+.+...   +       
T Consensus       270 ~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  345 (425)
T 1r5m_A          270 TLRIWHGGNGNSQ---NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKY  345 (425)
T ss_dssp             CEEEECSSSBSCS---EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEE
T ss_pred             EEEEEECCCCccc---eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEE
Confidence            5999999887643   3667789999999999999 5666553     788776655444443322211   0       


Q ss_pred             ----CCCeEEEecCCCCCC-----------------CCcccccCCCCC--CceeeeEecCCCEEEEEec
Q 004785          278 ----PPPVICMAGAHSSSH-----------------PGLAEEVPLITP--PFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       278 ----p~~~V~l~d~~s~d~-----------------~~L~~~~~~~sl--pil~p~FSpDg~rI~~~~~  323 (730)
                          ....+.+|+......                 ............  ++..+.|++|++.|++...
T Consensus       346 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  414 (425)
T 1r5m_A          346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS  414 (425)
T ss_dssp             EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred             EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence                123455666543330                 002222223322  6678999999998887443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.86  E-value=1.7e-20  Score=219.27  Aligned_cols=237  Identities=11%  Similarity=0.110  Sum_probs=185.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ++....+..|++++.|+.|++||..++    .+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|.+
T Consensus        19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~   98 (814)
T 3mkq_A           19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD   98 (814)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Confidence            344557889999999999999999876    4678999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCC-eEEEEe-cCCCCeEEEEEcC-CCCEEEEEEC-CeEEEEEcCCCcccc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTA-ECIGSR-DFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREETS  226 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~i~~l-~h~~~V~sVafSP-dG~~LAsgSd-d~I~VWDl~t~~~~~  226 (730)
                      .|.+++|+| ++.++++++.|++|++||+.++ .....+ .|...|.+++|+| ++++|++++. +.|++||+..+....
T Consensus        99 ~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~  177 (814)
T 3mkq_A           99 YIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF  177 (814)
T ss_dssp             CEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred             CEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence            999999999 8999999999999999999987 554544 5889999999999 8899999985 559999998776432


Q ss_pred             CCeEEec-CCCCeEEEEEcc--CCCeEEEEEe-----eCCccCCCcceeEeccCCccc---C-----------CCCeEEE
Q 004785          227 SPRIVLR-TRRSLRAVHFHP--HAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR---Y-----------PPPVICM  284 (730)
Q Consensus       227 ~~~~l~~-h~~~V~sVaFSP--dG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~---~-----------p~~~V~l  284 (730)
                         .... +...+..++|+|  ++.++++++.     +|++..+.....+..+.+.+.   +           ....+.+
T Consensus       178 ---~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~v  254 (814)
T 3mkq_A          178 ---TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI  254 (814)
T ss_dssp             ---EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ---EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence               3333 458899999999  8987777654     777776655554444333221   0           1234566


Q ss_pred             ecCCCCCCCCcccccCCCCCCceeeeEecCCCEE
Q 004785          285 AGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERI  318 (730)
Q Consensus       285 ~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI  318 (730)
                      |+..+.......   .....+++.++|+|+++.+
T Consensus       255 wd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          255 WNSSTYKVEKTL---NVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             EETTTCSEEEEE---CCSSSSEEEEEECTTCGGG
T ss_pred             EECCCCcEEEEe---ecCCCcEEEEEEccCCCce
Confidence            665544332222   2233466788999998853

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.86  E-value=1.2e-20  Score=206.91  Aligned_cols=192  Identities=15%  Similarity=0.118  Sum_probs=145.5

Q ss_pred             CCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE--EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          104 SPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       104 ~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~--l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      .+|...|+||+|+| ++++||+|+.||+|+|||+.+++.  +..+.+|.+.|++|+|+|.++++|++++.|++|++||++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            46888999999999 678999999999999999987754  344568999999999999778999999999999999998


Q ss_pred             CCeEEEEec---CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 004785          181 TAECIGSRD---FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEV  256 (730)
Q Consensus       181 tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsv  256 (730)
                      ++.......   +...+.+++|+|++++|++|+.+ .|++||++....    ..+..|...|.+++|+|++..++++++.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~----~~~~~h~~~v~~v~~~p~~~~~~~s~s~  271 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL----WNLRMHKKKVTHVALNPCCDWFLATASV  271 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC----CCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee----EEEecccceEEeeeecCCCceEEEEecC
Confidence            766544433   33467899999999999999955 599999975432    3467899999999999999877776641


Q ss_pred             CCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          257 NDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       257 wdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                      +                      ..+.+|+..................++..++|+||+.+|+..
T Consensus       272 d----------------------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~  314 (435)
T 4e54_B          272 D----------------------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT  314 (435)
T ss_dssp             T----------------------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE
T ss_pred             c----------------------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE
Confidence            1                      122333333322222222222334466678999999998863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.86  E-value=5.2e-20  Score=226.21  Aligned_cols=152  Identities=23%  Similarity=0.362  Sum_probs=136.9

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ..++...++..|++++.|++|++||..++    .+.+|...|.+++|+|||++|++++.|++|+|||+.+++.+..+.+|
T Consensus       619 ~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          619 YHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            34455668899999999999999999887    47899999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccC-CCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcc
Q 004785          149 RRTPWVVRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREE  224 (730)
Q Consensus       149 ~~~V~sVafSP~-dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~  224 (730)
                      ...|.+++|+|+ +..++++++.|++|++||+.+++++..+ .|...|.+++|+|+|++|++++.+ .|++||+.++..
T Consensus       699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~  777 (1249)
T 3sfz_A          699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE  777 (1249)
T ss_dssp             SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE
T ss_pred             CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcc
Confidence            999999999984 3458899999999999999999988775 588999999999999999999954 599999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.86  E-value=5.1e-20  Score=201.89  Aligned_cols=174  Identities=16%  Similarity=0.274  Sum_probs=147.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCC----------C----CCCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeE---
Q 004785           80 ARRGLASWVEAESLHHLRPKY----------C----PLSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSC---  141 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t----------~----~L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~---  141 (730)
                      ++..|++++.++.|++|+...          .    .+.+|...|++++|+|++. +|++|+.|+.|++||+.++..   
T Consensus       140 ~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~  219 (430)
T 2xyi_A          140 NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR  219 (430)
T ss_dssp             EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG
T ss_pred             CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc
Confidence            367899999999999999875          2    3568999999999999988 999999999999999987422   


Q ss_pred             ----EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC---eEEEEe-cCCCCeEEEEEcCCCC-EEEEEEC-
Q 004785          142 ----LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIAFHASGE-LLAVASG-  211 (730)
Q Consensus       142 ----l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~i~~l-~h~~~V~sVafSPdG~-~LAsgSd-  211 (730)
                          ...+.+|...|.+++|+|.++.+|++++.|+.|++||++++   +.+..+ .|...|++++|+|+++ +|++++. 
T Consensus       220 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d  299 (430)
T 2xyi_A          220 VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD  299 (430)
T ss_dssp             EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT
T ss_pred             eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC
Confidence                46678999999999999977899999999999999999987   344444 6889999999999997 6888885 


Q ss_pred             CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          212 HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       212 d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +.|++||++....  ....+..|...|.+++|+|+++++++++.
T Consensus       300 g~v~vwd~~~~~~--~~~~~~~h~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          300 KTVALWDLRNLKL--KLHSFESHKDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             SEEEEEETTCTTS--CSEEEECCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CeEEEEeCCCCCC--CeEEeecCCCCEEEEEECCCCCCEEEEEe
Confidence            4599999988543  23467779999999999999987666654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.86  E-value=3.2e-20  Score=190.39  Aligned_cols=123  Identities=18%  Similarity=0.216  Sum_probs=108.3

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC----eEEEEEecCCCCcEEEEEccC-CCCEEEEEeCCCcEEE
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRFHPL-NPTIIASGSLDHEVRL  176 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg----~~l~~l~gH~~~V~sVafSP~-dg~lLaSgS~DgtVrL  176 (730)
                      .+.+|.+.|++++|+|++++|++++.|+.|++||+.++    +.+..+.+|...|.+++|+|. ++++|++++.|++|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            35789999999999999999999999999999999876    467788999999999999984 4899999999999999


Q ss_pred             EECCCC---------eEEEEe-cCCCCeEEEEEcCC--CCEEEEEEC-CeEEEEEcCCCcc
Q 004785          177 WNASTA---------ECIGSR-DFYRPIASIAFHAS--GELLAVASG-HKLYIWRYNMREE  224 (730)
Q Consensus       177 WDl~tg---------~~i~~l-~h~~~V~sVafSPd--G~~LAsgSd-d~I~VWDl~t~~~  224 (730)
                      ||+.++         +.+..+ .|...|.+++|+|+  +++|++++. +.|++||+++++.
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence            999987         444444 58899999999999  999999995 4599999987653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.4e-21  Score=217.99  Aligned_cols=208  Identities=9%  Similarity=0.018  Sum_probs=151.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC--------CCCCCCCeEEEEECCC------CCEEEEEeCCCeEEEEECCCCeE------
Q 004785           82 RGLASWVEAESLHHLRPKYCP--------LSPPPRSTIAAAFSPD------GKTLASTHGDHTVKIIDCQTGSC------  141 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~--------L~gH~~~Vt~lafSPD------G~~LaSgS~DgtVrVWDl~tg~~------  141 (730)
                      ..+++++.|++|++|+..++.        +.+|.+.|.+++|+|+      +.+||+++.|++|+|||+.+++.      
T Consensus       174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~  253 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK  253 (524)
T ss_dssp             --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred             hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence            357888999999999987764        3467889999999996      57999999999999999987642      


Q ss_pred             -----EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEE-EecCCCCeEEE--EEcCCC-CEEEEEEC
Q 004785          142 -----LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIG-SRDFYRPIASI--AFHASG-ELLAVASG  211 (730)
Q Consensus       142 -----l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~-~l~h~~~V~sV--afSPdG-~~LAsgSd  211 (730)
                           ...+.+|...|++++|++ + ..|++|+.||+|++||+++++ +.. ...|...|.++  +|+|+| ++|++++.
T Consensus       254 ~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~  331 (524)
T 2j04_B          254 MCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV  331 (524)
T ss_dssp             CCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred             eecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence                 247889999999999998 4 489999999999999999764 333 34689999999  578888 89999995


Q ss_pred             C-eEEEEEcCCCccccCCeEEecCC--CCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCC
Q 004785          212 H-KLYIWRYNMREETSSPRIVLRTR--RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAH  288 (730)
Q Consensus       212 d-~I~VWDl~t~~~~~~~~~l~~h~--~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~  288 (730)
                      + .|+|||+++++...   .+.+|.  ..|.+++|+|+++.+++++...                       .+.+|+..
T Consensus       332 D~tvklWD~~~~~~~~---~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~-----------------------tv~lwd~~  385 (524)
T 2j04_B          332 DGYFYIFNPKDIATTK---TTVSRFRGSNLVPVVYCPQIYSYIYSDGAS-----------------------SLRAVPSR  385 (524)
T ss_dssp             TSEEEEECGGGHHHHC---EEEEECSCCSCCCEEEETTTTEEEEECSSS-----------------------EEEEEETT
T ss_pred             CCeEEEEECCCCCccc---ccccccccCcccceEeCCCcCeEEEeCCCC-----------------------cEEEEECc
Confidence            5 59999998876543   344554  3588999999999776654311                       23444433


Q ss_pred             CCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       289 s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      .+.......   +...+++.++|+||++.|+.
T Consensus       386 ~~~~~~~l~---gH~~~V~sva~Sp~g~~l~S  414 (524)
T 2j04_B          386 AAFAVHPLV---SRETTITAIGVSRLHPMVLA  414 (524)
T ss_dssp             CTTCCEEEE---ECSSCEEEEECCSSCCBCEE
T ss_pred             ccccceeee---cCCCceEEEEeCCCCCeEEE
Confidence            333222111   13346778899999998875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=3.9e-20  Score=196.79  Aligned_cols=164  Identities=20%  Similarity=0.219  Sum_probs=144.0

Q ss_pred             cCCCE-EEEEeCCCeEEEEeCCC------CC---------C-------CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEE
Q 004785           79 DARRG-LASWVEAESLHHLRPKY------CP---------L-------SPPPRSTIAAAFSPDGKTLASTHGDHTVKIID  135 (730)
Q Consensus        79 d~g~~-L~Sgs~DgsIrlWd~~t------~~---------L-------~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWD  135 (730)
                      ..+.. |++++.|+.|++||...      ..         +       ..|...|.+++|+|++ +|++++.|+.|++||
T Consensus       135 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d  213 (397)
T 1sq9_A          135 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE  213 (397)
T ss_dssp             ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred             CCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEE
Confidence            46677 99999999999999887      32         2       3488899999999999 999999999999999


Q ss_pred             CCCCeEEEEEec---C---CCCcEEEEEccCCCCEEEEEeCC---CcEEEEECCCCeEEEEec--------------CCC
Q 004785          136 CQTGSCLKVLHG---H---RRTPWVVRFHPLNPTIIASGSLD---HEVRLWNASTAECIGSRD--------------FYR  192 (730)
Q Consensus       136 l~tg~~l~~l~g---H---~~~V~sVafSP~dg~lLaSgS~D---gtVrLWDl~tg~~i~~l~--------------h~~  192 (730)
                      +++++.+..+..   |   ...|.+++|+| ++++|++++.|   +.|++||+++++.+..+.              |..
T Consensus       214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          214 LSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             TTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             CCCCceeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            999999999999   9   99999999999 89999999999   999999999998887764              788


Q ss_pred             CeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEe------cC---------------CCCeEEEEEccCC
Q 004785          193 PIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVL------RT---------------RRSLRAVHFHPHA  247 (730)
Q Consensus       193 ~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~------~h---------------~~~V~sVaFSPdG  247 (730)
                      .|.+++|+|++++|++++.+ .|+|||+++++...   .+.      .|               ...|.+++|+|+|
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeE---EEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            99999999999999999954 59999999887644   455      56               8999999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.86  E-value=5.8e-19  Score=181.22  Aligned_cols=232  Identities=15%  Similarity=0.167  Sum_probs=175.7

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           82 RGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ..|+.+ .|++|++||..+++      +.+|...|++++|+|++++|++|+.|++|++||+++++.+..+.+|...+.++
T Consensus        37 ~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~  115 (318)
T 4ggc_A           37 NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL  115 (318)
T ss_dssp             SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe
Confidence            355554 59999999998873      45788999999999999999999999999999999999999999999988776


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEE-EE-ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCcccc-CCeEE
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECI-GS-RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETS-SPRIV  231 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i-~~-l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~-~~~~l  231 (730)
                      .+   ++.++++++.++.+++|+...+... .. ..|...+..+.|++++++|++++.++ |++||+++++... .....
T Consensus       116 ~~---~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  192 (318)
T 4ggc_A          116 SW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF  192 (318)
T ss_dssp             EE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEE
T ss_pred             ec---CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeee
Confidence            66   4589999999999999999876433 33 46889999999999999999999655 9999998876432 23345


Q ss_pred             ecCCCCeEEEEEccCCCeEEEEEe--------eCCccCCCcceeEeccCC-----------cc----cCCCCeEEEecCC
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLTAE--------VNDLDSSESSLTLATSPG-----------YW----RYPPPVICMAGAH  288 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llatgs--------vwdl~s~~~~~~l~t~sG-----------~~----~~p~~~V~l~d~~  288 (730)
                      ..+...|..+.|+|++..++..+.        +|+...............           +.    ......+.+|+..
T Consensus       193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~  272 (318)
T 4ggc_A          193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYP  272 (318)
T ss_dssp             CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECC
Confidence            567889999999999887765432        666554443222211110           00    0123467888876


Q ss_pred             CCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          289 SSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       289 s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      ++......   .+...++..++|+||++.|+.
T Consensus       273 ~~~~~~~l---~gH~~~V~~l~~spdg~~l~S  301 (318)
T 4ggc_A          273 TMAKVAEL---KGHTSRVLSLTMSPDGATVAS  301 (318)
T ss_dssp             TCCEEEEE---CCCSSCEEEEEECTTSSCEEE
T ss_pred             CCcEEEEE---cCCCCCEEEEEEcCCCCEEEE
Confidence            65544333   345667888999999999885

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.86  E-value=7.3e-20  Score=212.82  Aligned_cols=180  Identities=19%  Similarity=0.194  Sum_probs=152.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDG--KTLASTHGDHTVKIIDCQTGSCLKVL  145 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG--~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (730)
                      ++....+..|++++.|++|++||....       ...+|...|.+++|+|++  ..|++++.|++|++||+.+++....+
T Consensus       478 ~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~  557 (694)
T 3dm0_A          478 VAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL  557 (694)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE
Confidence            334457788999999999999997543       235799999999999986  58999999999999999999999999


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccc
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREET  225 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~  225 (730)
                      .+|.+.|++++|+| ++++|++++.|++|++||+.+++.+..+.+...|.+++|+|++.+|++++++.|+|||++++...
T Consensus       558 ~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~  636 (694)
T 3dm0_A          558 AGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIV  636 (694)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred             cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCCh
Confidence            99999999999999 99999999999999999999999998888888999999999999999999999999999987653


Q ss_pred             cCCe----------------EEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          226 SSPR----------------IVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       226 ~~~~----------------~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ....                ....+...+.+++|+|||++|++++.
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~  682 (694)
T 3dm0_A          637 EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT  682 (694)
T ss_dssp             EEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred             hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence            3100                00011224789999999998887664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.86  E-value=5.5e-20  Score=193.12  Aligned_cols=176  Identities=16%  Similarity=0.152  Sum_probs=150.5

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---EEE
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKV  144 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~  144 (730)
                      .++....+..|++++.|+.|++||..++      .+..|...|.+++|+|++++|++++.|+.|++||+..++.   ...
T Consensus        57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  136 (372)
T 1k8k_C           57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  136 (372)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence            3444557889999999999999998776      2478999999999999999999999999999999988762   333


Q ss_pred             -EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC------------------CCeEEEEe-cCCCCeEEEEEcCCCC
Q 004785          145 -LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS------------------TAECIGSR-DFYRPIASIAFHASGE  204 (730)
Q Consensus       145 -l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~------------------tg~~i~~l-~h~~~V~sVafSPdG~  204 (730)
                       ...|...|.+++|+| +++++++++.|+.|++||++                  +++.+..+ .|...|.+++|+|+++
T Consensus       137 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          137 IKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS  215 (372)
T ss_dssp             ECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred             eecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence             367899999999999 89999999999999999954                  56777776 5888999999999999


Q ss_pred             EEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          205 LLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       205 ~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      +|++++.+ .|++||+++++...   .+..|...|.+++|+|++++++++
T Consensus       216 ~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKKMAVA---TLASETLPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGTTEEE---EEECSSCCEEEEEEEETTEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCceeE---EEccCCCCeEEEEEecCCCEEEEE
Confidence            99999955 59999999887544   667788899999999999866554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.86  E-value=3.9e-20  Score=199.42  Aligned_cols=229  Identities=13%  Similarity=0.084  Sum_probs=164.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCCCeEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC-------------PLSPPPRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCLK  143 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~-------------~L~gH~~~Vt~lafSPDG~~LaSgS--~DgtVrVWDl~tg~~l~  143 (730)
                      +....|+++..|+.+++|+....             ....+...+.+++|||||++|++++  .|++|+|||+++++++.
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~  171 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF  171 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence            34455666677889999987543             1234566799999999999987654  68999999999999998


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE---ecCCCCeEEEEEcCCCCEEEEEE-CC----eEE
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELLAVAS-GH----KLY  215 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~---l~h~~~V~sVafSPdG~~LAsgS-dd----~I~  215 (730)
                      .+. |.+.|.+++|+| +++++++++.| .+++|+..+++.+..   ..|...|.+++|+|+|++|++++ ++    .++
T Consensus       172 ~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~  248 (365)
T 4h5i_A          172 EIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT  248 (365)
T ss_dssp             EEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred             EeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence            886 778899999999 99999999855 577777777766543   24677899999999999999988 33    278


Q ss_pred             EEEcCCCcccc-CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCC
Q 004785          216 IWRYNMREETS-SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPG  294 (730)
Q Consensus       216 VWDl~t~~~~~-~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~  294 (730)
                      +||+....... ....+..|...|++++|+|||++|++++...                       .|.+|+..++... 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-----------------------~V~iwd~~~~~~~-  304 (365)
T 4h5i_A          249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-----------------------SIALVKLKDLSMS-  304 (365)
T ss_dssp             EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-----------------------CEEEEETTTTEEE-
T ss_pred             ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-----------------------EEEEEECCCCcEE-
Confidence            88887664321 1235667889999999999999777665411                       2344443332211 


Q ss_pred             cccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCC
Q 004785          295 LAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSS  339 (730)
Q Consensus       295 L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss  339 (730)
                       .....+...++..++|||||++|+-...+.    ++-.++++..
T Consensus       305 -~~~~~gH~~~V~~v~fSpdg~~laS~S~D~----tvrvw~ip~~  344 (365)
T 4h5i_A          305 -KIFKQAHSFAITEVTISPDSTYVASVSAAN----TIHIIKLPLN  344 (365)
T ss_dssp             -EEETTSSSSCEEEEEECTTSCEEEEEETTS----EEEEEECCTT
T ss_pred             -EEecCcccCCEEEEEECCCCCEEEEEeCCC----eEEEEEcCCC
Confidence             111223445677899999999998643332    4556666543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.86  E-value=5.6e-21  Score=200.93  Aligned_cols=176  Identities=18%  Similarity=0.215  Sum_probs=144.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCeE---EEEEecC
Q 004785           80 ARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSC---LKVLHGH  148 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~~---l~~l~gH  148 (730)
                      .+..|++++.|++|++||..++      .+.+|...|.+++|+|+  +.+|++|+.|++|++||+.++..   ...+.+|
T Consensus        70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            3689999999999999999875      25689999999999997  88999999999999999987632   3456789


Q ss_pred             CCCcEEEEEccCC----------------CCEEEEEeCCCcEEEEECCCC---eEEEEe-cCCCCeEEEEEcCCC----C
Q 004785          149 RRTPWVVRFHPLN----------------PTIIASGSLDHEVRLWNASTA---ECIGSR-DFYRPIASIAFHASG----E  204 (730)
Q Consensus       149 ~~~V~sVafSP~d----------------g~lLaSgS~DgtVrLWDl~tg---~~i~~l-~h~~~V~sVafSPdG----~  204 (730)
                      ...|.+++|+|+.                +.+|++++.|++|++||++++   +.+..+ .|...|.+++|+|++    +
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~  229 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS  229 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCC
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCc
Confidence            9999999999931                468999999999999999765   344444 588999999999987    7


Q ss_pred             EEEEEECC-eEEEEEcCCCcc-ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          205 LLAVASGH-KLYIWRYNMREE-TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       205 ~LAsgSdd-~I~VWDl~t~~~-~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +|++++.+ .|+|||+..... ......+..|...|.+++|+|+|++|++++.
T Consensus       230 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~  282 (316)
T 3bg1_A          230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG  282 (316)
T ss_dssp             EEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred             eEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence            89999955 599999976321 1112345678899999999999998887765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.86  E-value=4.6e-20  Score=196.22  Aligned_cols=178  Identities=18%  Similarity=0.121  Sum_probs=149.5

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC---------CCCC-----CCCeEEEEEC----CCCCE-EEEEeCCCeEEEEECCC----
Q 004785           82 RGLASWVEAESLHHLRPKYCP---------LSPP-----PRSTIAAAFS----PDGKT-LASTHGDHTVKIIDCQT----  138 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~---------L~gH-----~~~Vt~lafS----PDG~~-LaSgS~DgtVrVWDl~t----  138 (730)
                      ..|++++.|+.|++|+..++.         +..|     ...|.+++|+    |++++ |++++.|+.|++||+.+    
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence            899999999999999987543         4567     5899999999    99999 99999999999999988    


Q ss_pred             --CeEEE-----EEe-------cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec----C---CCCeEEE
Q 004785          139 --GSCLK-----VLH-------GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----F---YRPIASI  197 (730)
Q Consensus       139 --g~~l~-----~l~-------gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~----h---~~~V~sV  197 (730)
                        ++.+.     .+.       .|...|.+++|+| ++ ++++++.|+.|++||+++++.+..+.    |   ...|.++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence              66665     774       4899999999999 77 99999999999999999999888765    5   8899999


Q ss_pred             EEcCCCCEEEEEECC----eEEEEEcCCCccccCCeEEec-------------CCCCeEEEEEccCCCeEEEEEe-----
Q 004785          198 AFHASGELLAVASGH----KLYIWRYNMREETSSPRIVLR-------------TRRSLRAVHFHPHAAPLLLTAE-----  255 (730)
Q Consensus       198 afSPdG~~LAsgSdd----~I~VWDl~t~~~~~~~~~l~~-------------h~~~V~sVaFSPdG~~Llatgs-----  255 (730)
                      +|+|++++|++++.+    .|++||+++++...   .+..             |...|.+++|+|++++|++++.     
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEE---EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCcccc---eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            999999999999855    59999999887544   5555             8999999999999998877664     


Q ss_pred             eCCccCCCc
Q 004785          256 VNDLDSSES  264 (730)
Q Consensus       256 vwdl~s~~~  264 (730)
                      +|++.....
T Consensus       317 iwd~~~~~~  325 (397)
T 1sq9_A          317 FWDVKTKER  325 (397)
T ss_dssp             EEETTTTEE
T ss_pred             EEEcCCCce
Confidence            666665443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.85  E-value=1.4e-20  Score=196.38  Aligned_cols=182  Identities=18%  Similarity=0.257  Sum_probs=154.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEE---ecCCCCc
Q 004785           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVL---HGHRRTP  152 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l---~gH~~~V  152 (730)
                      +..|++++.|+.|++||..++    .+.+|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+   .+|...|
T Consensus        85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  164 (366)
T 3k26_A           85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV  164 (366)
T ss_dssp             CEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred             CCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence            568999999999999999876    3668999999999999 9999999999999999999999999888   7899999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----------------------------CCCCeEEEEEcCCC
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----------------------------FYRPIASIAFHASG  203 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----------------------------h~~~V~sVafSPdG  203 (730)
                      .+++|+| +++++++++.|+.|++||+++++....+.                             |...|.+++|+  +
T Consensus       165 ~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  241 (366)
T 3k26_A          165 LSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G  241 (366)
T ss_dssp             EEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred             eEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence            9999999 99999999999999999999876543222                             88899999999  7


Q ss_pred             CEEEEEEC-CeEEEEEcCCCccc-----------cCCeEEecCCCCeEEEEEccC--CCeEEEEEe-----eCCccCCCc
Q 004785          204 ELLAVASG-HKLYIWRYNMREET-----------SSPRIVLRTRRSLRAVHFHPH--AAPLLLTAE-----VNDLDSSES  264 (730)
Q Consensus       204 ~~LAsgSd-d~I~VWDl~t~~~~-----------~~~~~l~~h~~~V~sVaFSPd--G~~Llatgs-----vwdl~s~~~  264 (730)
                      ++|++++. +.|++||+++....           .....+..|...|.+++|+|+  ++++++++.     +|++...+.
T Consensus       242 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          242 DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            79999985 55999999876430           112355678889999999999  997777654     788876654


Q ss_pred             c
Q 004785          265 S  265 (730)
Q Consensus       265 ~  265 (730)
                      .
T Consensus       322 ~  322 (366)
T 3k26_A          322 H  322 (366)
T ss_dssp             G
T ss_pred             c
Confidence            4

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.85  E-value=3.3e-20  Score=200.02  Aligned_cols=178  Identities=16%  Similarity=0.178  Sum_probs=141.8

Q ss_pred             EEEEecCCCEEE--EEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--EEe
Q 004785           74 FEAGRDARRGLA--SWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLH  146 (730)
Q Consensus        74 l~a~~d~g~~L~--Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~  146 (730)
                      .++.+.+++.++  +++.|++|++||..+++   ...|...|.+++|+|||++|++++.| .+++|+..+++.+.  ...
T Consensus       138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~  216 (365)
T 4h5i_A          138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF  216 (365)
T ss_dssp             EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC
T ss_pred             EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC
Confidence            344455666665  45578999999998873   22578889999999999999999865 56677777776654  345


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCC----cEEEEECCCCeEEE-----EecCCCCeEEEEEcCCCCEEEEEECCe-EEE
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIG-----SRDFYRPIASIAFHASGELLAVASGHK-LYI  216 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~Dg----tVrLWDl~tg~~i~-----~l~h~~~V~sVafSPdG~~LAsgSdd~-I~V  216 (730)
                      +|...|.+++|+| ++.++++++.|+    .+++||+.......     ...|...|++++|+|||++||+|+.++ |+|
T Consensus       217 ~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~i  295 (365)
T 4h5i_A          217 DKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIAL  295 (365)
T ss_dssp             CTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             CCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEE
Confidence            7888999999999 999999999887    68899988765422     235788999999999999999999654 999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ||+++++.+.  ..+.+|...|++|+|+|||++|++++.
T Consensus       296 wd~~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          296 VKLKDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             EETTTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             EECCCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeC
Confidence            9999987643  224579999999999999998777654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.2e-20  Score=196.53  Aligned_cols=171  Identities=12%  Similarity=0.058  Sum_probs=138.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---------CCeEEEEEe-c
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---------TGSCLKVLH-G  147 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~g--H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~---------tg~~l~~l~-g  147 (730)
                      ++..+++++.|++|++||..+++...  ....|.++.|+|+   +++++.|++|++|+..         +++.+..+. +
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  123 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD  123 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence            56789999999999999998764211  1356778888887   9999999999999665         555555554 7


Q ss_pred             CCCCcEEEEEcc-CCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCc
Q 004785          148 HRRTPWVVRFHP-LNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMRE  223 (730)
Q Consensus       148 H~~~V~sVafSP-~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~  223 (730)
                      |.+.|.+++|+| .+++++++++.|++|++||+++++.+...  .+...+.+++|+|+|++|++|+.+ .|+|||+++++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            778999999998 25689999999999999999999987665  355679999999999999999854 59999999887


Q ss_pred             cccCCeEEec-CCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~-h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...  ..+.. |...|.+++|+|+|.+|++++.
T Consensus       204 ~~~--~~~~~~h~~~v~~l~fs~~g~~l~s~~~  234 (343)
T 3lrv_A          204 QAS--SRFPVDEEAKIKEVKFADNGYWMVVECD  234 (343)
T ss_dssp             SCC--EECCCCTTSCEEEEEECTTSSEEEEEES
T ss_pred             CCc--cEEeccCCCCEEEEEEeCCCCEEEEEeC
Confidence            531  24555 8999999999999998777663

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1e-19  Score=214.85  Aligned_cols=221  Identities=15%  Similarity=0.141  Sum_probs=170.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCe--EEEEEec
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKVLHG  147 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~l~g  147 (730)
                      ...+..|++++.|++|++||....      .+.+|.+.|++++|+++  +++|++|+.||.|++||+.+++  .+..+.+
T Consensus        18 s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~   97 (753)
T 3jro_A           18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV   97 (753)
T ss_dssp             CSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred             CCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccC
Confidence            346778999999999999998733      47899999999999997  9999999999999999999987  7788889


Q ss_pred             CCCCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCCeE---EEEecCCCCeEEEEEcC-------------CCCEEEEE
Q 004785          148 HRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTAEC---IGSRDFYRPIASIAFHA-------------SGELLAVA  209 (730)
Q Consensus       148 H~~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg~~---i~~l~h~~~V~sVafSP-------------dG~~LAsg  209 (730)
                      |...|.+++|+| +  ++++++++.|++|++||++++..   .....|...|.+++|+|             ++++|+++
T Consensus        98 h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg  176 (753)
T 3jro_A           98 HSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  176 (753)
T ss_dssp             CSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE
T ss_pred             CCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE
Confidence            999999999999 6  89999999999999999998732   33346889999999999             58999999


Q ss_pred             ECC-eEEEEEcCCCccc-cCCeEEecCCCCeEEEEEccC---CCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEE
Q 004785          210 SGH-KLYIWRYNMREET-SSPRIVLRTRRSLRAVHFHPH---AAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICM  284 (730)
Q Consensus       210 Sdd-~I~VWDl~t~~~~-~~~~~l~~h~~~V~sVaFSPd---G~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l  284 (730)
                      +.+ .|++||++++... .....+..|...|.+++|+|+   ++++++++...                       .+.+
T Consensus       177 s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-----------------------~I~i  233 (753)
T 3jro_A          177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----------------------TCII  233 (753)
T ss_dssp             ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-----------------------CEEE
T ss_pred             ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-----------------------EEEE
Confidence            954 5999999887532 112356678999999999999   77666665311                       2333


Q ss_pred             ecCCCCCCCC--cccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          285 AGAHSSSHPG--LAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       285 ~d~~s~d~~~--L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      |+...+....  ...........+...+|+||++.++...
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence            3333221110  1111112233556789999999888743

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.85  E-value=3.8e-20  Score=200.93  Aligned_cols=195  Identities=11%  Similarity=0.104  Sum_probs=153.4

Q ss_pred             EEEEec-CCCEEEEEeCCCeEEEEeCCC---C-----CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC---CCe
Q 004785           74 FEAGRD-ARRGLASWVEAESLHHLRPKY---C-----PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ---TGS  140 (730)
Q Consensus        74 l~a~~d-~g~~L~Sgs~DgsIrlWd~~t---~-----~L~-gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~---tg~  140 (730)
                      .++... .+..|++++.|++|++||..+   +     .+. +|...|++++|+|++++|++++.|++|++||+.   +++
T Consensus        68 ~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~  147 (437)
T 3gre_A           68 SSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES  147 (437)
T ss_dssp             EEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc
Confidence            344445 678999999999999999865   2     222 689999999999999999999999999999994   565


Q ss_pred             EEEEEec------------CCCCcEEEE--EccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCC
Q 004785          141 CLKVLHG------------HRRTPWVVR--FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASG  203 (730)
Q Consensus       141 ~l~~l~g------------H~~~V~sVa--fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG  203 (730)
                      .+..+.+            +...+.++.  +++ ++.++++++.|++|++||+++++.+..+.   |...|.+++|+|++
T Consensus       148 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~  226 (437)
T 3gre_A          148 EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC  226 (437)
T ss_dssp             EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS
T ss_pred             eeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC
Confidence            5554433            445566666  456 78999999999999999999999888764   67899999999999


Q ss_pred             CEEEEEECCe-EEEEEcCCCccccCCeEE-ecCCCCeEEEEEcc----CCCeEEEEEe-----eCCccCCCcceeEeccC
Q 004785          204 ELLAVASGHK-LYIWRYNMREETSSPRIV-LRTRRSLRAVHFHP----HAAPLLLTAE-----VNDLDSSESSLTLATSP  272 (730)
Q Consensus       204 ~~LAsgSdd~-I~VWDl~t~~~~~~~~~l-~~h~~~V~sVaFSP----dG~~Llatgs-----vwdl~s~~~~~~l~t~s  272 (730)
                      ++|++++.++ |++||+++++...   .+ ..|...|.+++|+|    ++.++++++.     +|++..+.....+..+.
T Consensus       227 ~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  303 (437)
T 3gre_A          227 CVLILGTTRGIIDIWDIRFNVLIR---SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSD  303 (437)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEE---EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSS
T ss_pred             CEEEEEcCCCeEEEEEcCCccEEE---EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCC
Confidence            9999999655 9999999876533   33 36778999996664    5766666533     88888776666655443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=9.6e-20  Score=189.42  Aligned_cols=173  Identities=10%  Similarity=0.017  Sum_probs=147.0

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEEC-CCCeEEEEEec
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPDGK-TLASTHGDHTVKIIDC-QTGSCLKVLHG  147 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl-~tg~~l~~l~g  147 (730)
                      ....+..|++++.|+.|++|+.....       +.+|...|++++|+|+++ +|++++.|+.|++||+ .+++. ..+.+
T Consensus        19 ~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~   97 (342)
T 1yfq_A           19 IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTN   97 (342)
T ss_dssp             EEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBS
T ss_pred             EcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eeccc
Confidence            34467889999999999999987653       458999999999999999 9999999999999999 87764 77888


Q ss_pred             --CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC---------CeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEE
Q 004785          148 --HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST---------AECIGSRDFYRPIASIAFHASGELLAVAS-GHKLY  215 (730)
Q Consensus       148 --H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t---------g~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~  215 (730)
                        |...|.+++|+|  ++++++++.|+.|++||+++         ++++..+.+...|.+++|+|++  |++++ ++.|+
T Consensus        98 ~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~  173 (342)
T 1yfq_A           98 NEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQ  173 (342)
T ss_dssp             CCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEE
T ss_pred             cCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEE
Confidence              999999999999  78999999999999999988         7777777789999999999988  67776 55699


Q ss_pred             EEEcCC-CccccCCeEEecCCCCeEEEEEcc-CCCeEEEEEe
Q 004785          216 IWRYNM-REETSSPRIVLRTRRSLRAVHFHP-HAAPLLLTAE  255 (730)
Q Consensus       216 VWDl~t-~~~~~~~~~l~~h~~~V~sVaFSP-dG~~Llatgs  255 (730)
                      +||+++ ..... ......|...|.+++|+| +++++++++.
T Consensus       174 i~d~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~l~~~~~  214 (342)
T 1yfq_A          174 WFRLPLCEDDNG-TIEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             EEESSCCTTCCC-EEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             EEECCccccccc-eeeecCCCCceeEEEECCCCCCEEEEEec
Confidence            999988 54321 234556788999999999 9997777664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.84  E-value=4.7e-19  Score=207.04  Aligned_cols=194  Identities=17%  Similarity=0.231  Sum_probs=164.6

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEEec
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-SCLKVLHG  147 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg-~~l~~l~g  147 (730)
                      ...+....+..|++++.|+.|++||..++    .+.+|.+.|++++|+|++++|++++.|++|++||+.++ .....+.+
T Consensus        59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            33444567789999999999999999876    36789999999999999999999999999999999987 67788899


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CCCCeEEEEEcC--CCCEEEEEECC-eEEEEEcCCC
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHA--SGELLAVASGH-KLYIWRYNMR  222 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~--h~~~V~sVafSP--dG~~LAsgSdd-~I~VWDl~t~  222 (730)
                      |...|.+++|+|.+++++++++.|++|++||+.+++....+.  +...+..++|+|  ++++|++++.+ .|++||+.++
T Consensus       139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999677899999999999999998877665543  448899999999  99999999955 4999999888


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~  269 (730)
                      +...   .+..|...|.+++|+|+++++++++.     +|++..+.....+.
T Consensus       219 ~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  267 (814)
T 3mkq_A          219 SCVA---TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN  267 (814)
T ss_dssp             EEEE---EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             cEEE---EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence            7543   66778999999999999998777664     77777655444443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.84  E-value=6.4e-20  Score=191.13  Aligned_cols=169  Identities=10%  Similarity=0.133  Sum_probs=140.8

Q ss_pred             CEEEEEeC---CCeEEEEeCCCCC-----CCCCCCCeEEEEECCC---CCEEEEEeCCCeEEEEECCCCe-EEEEEecCC
Q 004785           82 RGLASWVE---AESLHHLRPKYCP-----LSPPPRSTIAAAFSPD---GKTLASTHGDHTVKIIDCQTGS-CLKVLHGHR  149 (730)
Q Consensus        82 ~~L~Sgs~---DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPD---G~~LaSgS~DgtVrVWDl~tg~-~l~~l~gH~  149 (730)
                      ..+++++.   |+.|++||..++.     ..+|...|.+++|+|+   +++|++++.|+.|++||+.+++ .+..+.+|.
T Consensus        32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  111 (357)
T 3i2n_A           32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK  111 (357)
T ss_dssp             EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS
T ss_pred             eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc
Confidence            45556665   9999999998763     2379999999999998   7999999999999999999988 889999999


Q ss_pred             CCcEEEEE------ccCCCCEEEEEeCCCcEEEEECCCCe-EEEEec-C----CCCeEEEE----EcCCCCEEEEEECC-
Q 004785          150 RTPWVVRF------HPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD-F----YRPIASIA----FHASGELLAVASGH-  212 (730)
Q Consensus       150 ~~V~sVaf------SP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l~-h----~~~V~sVa----fSPdG~~LAsgSdd-  212 (730)
                      ..|.++.|      +| +++++++++.|++|++||+.+++ .+..+. +    ...+.+++    |+|++++|++++.+ 
T Consensus       112 ~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~  190 (357)
T 3i2n_A          112 EIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG  190 (357)
T ss_dssp             SCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS
T ss_pred             cceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC
Confidence            99999965      67 88999999999999999999886 555543 2    33788998    78999999999964 


Q ss_pred             eEEEEEcCCCccccCCeEEecCCCCeEEEEEcc---CCCeEEEEEe
Q 004785          213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP---HAAPLLLTAE  255 (730)
Q Consensus       213 ~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP---dG~~Llatgs  255 (730)
                      .|++||+++++..    ....|...|.+++|+|   ++.++++++.
T Consensus       191 ~i~i~d~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  232 (357)
T 3i2n_A          191 DIKLFDLRNMALR----WETNIKNGVCSLEFDRKDISMNKLVATSL  232 (357)
T ss_dssp             EEEEEETTTTEEE----EEEECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred             eEEEEECccCcee----eecCCCCceEEEEcCCCCCCCCEEEEECC
Confidence            5999999988752    3567889999999999   8998777654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=4.1e-20  Score=195.71  Aligned_cols=170  Identities=11%  Similarity=0.008  Sum_probs=137.5

Q ss_pred             EEEEeCCCeEEEEeCC---------CCC-----CCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEEe-
Q 004785           84 LASWVEAESLHHLRPK---------YCP-----LSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLH-  146 (730)
Q Consensus        84 L~Sgs~DgsIrlWd~~---------t~~-----L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~-  146 (730)
                      +++++.|++|++|+..         +..     ..+|.+.|.+++|+|  ++++|++++.|++|++||+++++.+..+. 
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            8889999999999765         332     236668999999999  99999999999999999999999877764 


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE-EEe-c-CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSR-D-FYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i-~~l-~-h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~  223 (730)
                      .|...|.+++|+| ++.++++|+.|+.|++||+++++.+ ..+ . |...|.+++|+|+|++|++++++.|++||+++.+
T Consensus       168 ~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~  246 (343)
T 3lrv_A          168 KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDV  246 (343)
T ss_dssp             CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSST
T ss_pred             CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCC
Confidence            4556899999999 9999999999999999999998876 444 3 7899999999999999999998899999999887


Q ss_pred             cccCCeEEecCCCCe--EEEEEccCCCeEEEEE
Q 004785          224 ETSSPRIVLRTRRSL--RAVHFHPHAAPLLLTA  254 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V--~sVaFSPdG~~Llatg  254 (730)
                      .......+..|...+  .+++|+|+|+++++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s  279 (343)
T 3lrv_A          247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS  279 (343)
T ss_dssp             TCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred             cceeecccccccccccceEEEECCCCCEEEEec
Confidence            543222222233333  4699999999888754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.84  E-value=2e-19  Score=191.86  Aligned_cols=144  Identities=13%  Similarity=0.118  Sum_probs=129.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ++..|++++.|+.|++||+....      ..+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+.+|...|.
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~  208 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT  208 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence            56889999999999999998652      2355688999999999999999999999999999 6788999999999999


Q ss_pred             EEEEccCCCC-EEEEEeCCCcEEEEECCC----CeEEEEecCCCCeEEEEEcC-CCCEEEEEEC-CeEEEEEcCCCccc
Q 004785          154 VVRFHPLNPT-IIASGSLDHEVRLWNAST----AECIGSRDFYRPIASIAFHA-SGELLAVASG-HKLYIWRYNMREET  225 (730)
Q Consensus       154 sVafSP~dg~-lLaSgS~DgtVrLWDl~t----g~~i~~l~h~~~V~sVafSP-dG~~LAsgSd-d~I~VWDl~t~~~~  225 (730)
                      +++|+| ++. ++++++.|++|++||+++    ++.+..+.|...|.+++|+| +|++|++++. +.|++||+++++..
T Consensus       209 ~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~  286 (383)
T 3ei3_B          209 HAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP  286 (383)
T ss_dssp             EEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred             EEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            999999 666 999999999999999998    67788788999999999999 9999999995 55999999887653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.84  E-value=7.1e-20  Score=197.93  Aligned_cols=232  Identities=11%  Similarity=0.146  Sum_probs=167.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC--------------------------------------------CCCCCCCeEEEEECC
Q 004785           82 RGLASWVEAESLHHLRPKYCP--------------------------------------------LSPPPRSTIAAAFSP  117 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~--------------------------------------------L~gH~~~Vt~lafSP  117 (730)
                      ..|++++.|++|++||...+.                                            +.+|...|++++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            689999999999999986521                                            368999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCC-CeEEEE-------EecCCCCcEEEEEccCCC-CEEEEEeCCCcEEEEECCCCeE----
Q 004785          118 DGKTLASTHGDHTVKIIDCQT-GSCLKV-------LHGHRRTPWVVRFHPLNP-TIIASGSLDHEVRLWNASTAEC----  184 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~t-g~~l~~-------l~gH~~~V~sVafSP~dg-~lLaSgS~DgtVrLWDl~tg~~----  184 (730)
                      ++++|++| .|+.|++||+.+ ++.+..       +.+|...|.+++|+| ++ ++|++++.|++|++||+++++.    
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            99999998 899999999984 444442       568999999999999 65 9999999999999999999886    


Q ss_pred             EEEec-CCC------------CeEEEEEcCCCCEEEEEECCeEEEEEcCC-CccccCCeEEecCCCC-------------
Q 004785          185 IGSRD-FYR------------PIASIAFHASGELLAVASGHKLYIWRYNM-REETSSPRIVLRTRRS-------------  237 (730)
Q Consensus       185 i~~l~-h~~------------~V~sVafSPdG~~LAsgSdd~I~VWDl~t-~~~~~~~~~l~~h~~~-------------  237 (730)
                      +..+. +..            .|.+++|+|+|++|++++++.|+|||+++ ++...   .+..|...             
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVE---TYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSC---CEESCGGGTTTHHHHHHTSGG
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccc---eeecccccccccccccccccc
Confidence            45554 443            89999999999999999996699999987 54332   44455321             


Q ss_pred             --eEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc----CCCCeEEEecCCCCCCCCcccccCCCCCCc
Q 004785          238 --LRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR----YPPPVICMAGAHSSSHPGLAEEVPLITPPF  306 (730)
Q Consensus       238 --V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~----~p~~~V~l~d~~s~d~~~L~~~~~~~slpi  306 (730)
                        +..++|+|++++|++++.     +|++..++.. .+.......+    .....+...  .......+.........++
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i  419 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCAS--GKRKKDEISVDSLDFNKKI  419 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECS--SCCCTTCEEGGGCCTTSCC
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCcccccc--CCcccccccccccccCCce
Confidence              334999999998876654     7887765543 2222211111    011111111  1111122222233344567


Q ss_pred             eeeeEecCCCEEEEE
Q 004785          307 LRPSFVRDDERISLQ  321 (730)
Q Consensus       307 l~p~FSpDg~rI~~~  321 (730)
                      +.++|+|++..|++.
T Consensus       420 ~~~~~~p~~~~la~~  434 (447)
T 3dw8_B          420 LHTAWHPKENIIAVA  434 (447)
T ss_dssp             CEEEECSSSSEEEEE
T ss_pred             eEEEECCCCCEEEEE
Confidence            789999999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.84  E-value=1.2e-18  Score=190.38  Aligned_cols=228  Identities=14%  Similarity=0.221  Sum_probs=177.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      .+..|++++.|++|++||..++    .+.+|.+.|.+++|+  +++|++|+.|++|++||+.+++.+..+.+|...|.++
T Consensus       128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~  205 (445)
T 2ovr_B          128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM  205 (445)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE
Confidence            4789999999999999999876    478999999999997  6799999999999999999999999999999999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      .|++   +.+++++.|++|++||+.+++.+..+ .|...|.+++|  ++++|++++.+ .|++||+++++...   .+..
T Consensus       206 ~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~  277 (445)
T 2ovr_B          206 HLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH---TLQG  277 (445)
T ss_dssp             EEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE---EECC
T ss_pred             EecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE---EecC
Confidence            9964   78999999999999999999988776 48889999999  78889999855 49999999887544   5677


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCccc------------CCCCeEEEecCCCCCCCCcc
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWR------------YPPPVICMAGAHSSSHPGLA  296 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~------------~p~~~V~l~d~~s~d~~~L~  296 (730)
                      |...|.++.|  ++.++++++.     +|++..+.....+..+.+...            .....+.+|+..++......
T Consensus       278 ~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  355 (445)
T 2ovr_B          278 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL  355 (445)
T ss_dssp             CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            8999999999  7887777664     788877665555443322211            01345677776655443333


Q ss_pred             cccCCCCCCceeeeEecCCCEEEEE
Q 004785          297 EEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       297 ~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                      ........++....|  +++.++..
T Consensus       356 ~~~~~~~~~v~~~~~--~~~~l~s~  378 (445)
T 2ovr_B          356 QGPNKHQSAVTCLQF--NKNFVITS  378 (445)
T ss_dssp             CSTTSCSSCEEEEEE--CSSEEEEE
T ss_pred             ccCCCCCCCEEEEEE--CCCEEEEE
Confidence            332223444555555  45666653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.84  E-value=1.1e-19  Score=192.59  Aligned_cols=212  Identities=17%  Similarity=0.208  Sum_probs=160.1

Q ss_pred             eEEEEeCCCC----CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEe-------------cCCCCcE
Q 004785           92 SLHHLRPKYC----PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLH-------------GHRRTPW  153 (730)
Q Consensus        92 sIrlWd~~t~----~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~-------------gH~~~V~  153 (730)
                      .+++|+.+..    .+.+|.+.|++++|+| ++++|++++.|+.|++||+.+++....+.             +|...|.
T Consensus        24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  103 (408)
T 4a11_B           24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE  103 (408)
T ss_dssp             HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred             cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence            4455555433    3678999999999999 99999999999999999999876554442             5999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCC---CEEEEEECC-eEEEEEcCCCccccCCe
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASG---ELLAVASGH-KLYIWRYNMREETSSPR  229 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG---~~LAsgSdd-~I~VWDl~t~~~~~~~~  229 (730)
                      +++|+|+++.++++++.|+.|++||+.+++.+..+.+...+.++.|+|.+   .+|++++.+ .|++||+++++..   .
T Consensus       104 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~  180 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS---H  180 (408)
T ss_dssp             EEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC---E
T ss_pred             EEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee---e
Confidence            99999977889999999999999999999999999999999999999954   489998855 5999999987653   3


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCcce-eEeccCCcccCCCCeEEEecCCCCCCCCcccccCCC
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSL-TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLI  302 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~~~-~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~  302 (730)
                      .+..|...|.+++|+|+++++++++.      +|+++...... .+....+.                ............
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~  244 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK----------------KSQAVESANTAH  244 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC----------------SCCCTTTSSCSC
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc----------------cceeeccccccc
Confidence            67789999999999999997555543      55655433211 11111000                011111112233


Q ss_pred             CCCceeeeEecCCCEEEEEe
Q 004785          303 TPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       303 slpil~p~FSpDg~rI~~~~  322 (730)
                      ..++..+.|+||++.++...
T Consensus       245 ~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          245 NGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             SSCEEEEEECTTSSEEEEEE
T ss_pred             cCceeEEEEcCCCCEEEEec
Confidence            45667899999999998743

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.84  E-value=8e-19  Score=215.69  Aligned_cols=179  Identities=18%  Similarity=0.261  Sum_probs=154.5

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSP--DGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (730)
                      ...+...++..|++++.|++|++||..++    .+.+|...|.+++|+|  ++.++++++.|+.|++||+.+++++..+.
T Consensus       661 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~  740 (1249)
T 3sfz_A          661 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF  740 (1249)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC
T ss_pred             EEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec
Confidence            33445567889999999999999999887    3678999999999999  55689999999999999999999999999


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------------------------------------
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------------------------------------  188 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--------------------------------------  188 (730)
                      +|.+.|.+++|+| +++++++++.|++|++||+.+++....+                                      
T Consensus       741 ~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          741 GHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             CCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred             CCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence            9999999999999 9999999999999999999877543322                                      


Q ss_pred             ------------------cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCe
Q 004785          189 ------------------DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP  249 (730)
Q Consensus       189 ------------------~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~  249 (730)
                                        .|...|.+++|+|+++++++++.++ |++||+.++....   .+.+|...|.+++|+|+|++
T Consensus       820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~---~~~~h~~~v~~v~~spdg~~  896 (1249)
T 3sfz_A          820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA---DCRGHLSWVHGVMFSPDGSS  896 (1249)
T ss_dssp             EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSSE
T ss_pred             cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee---ecCCCccceEEEEECCCCCE
Confidence                              3556788899999999999988544 9999998876543   67789999999999999998


Q ss_pred             EEEEEe
Q 004785          250 LLLTAE  255 (730)
Q Consensus       250 Llatgs  255 (730)
                      +++++.
T Consensus       897 l~s~s~  902 (1249)
T 3sfz_A          897 FLTASD  902 (1249)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            887765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.84  E-value=1.1e-18  Score=190.18  Aligned_cols=155  Identities=21%  Similarity=0.390  Sum_probs=133.8

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe----EEEEEecCCCCcEEEEEccCCCCEEEEE--eCCCcEEE
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASG--SLDHEVRL  176 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~----~l~~l~gH~~~V~sVafSP~dg~lLaSg--S~DgtVrL  176 (730)
                      +.+|...+..+.|+|++++|++++.|+.|++||..+++    .+..+..|.+.|.+++|+|.+..+++++  +.|++|++
T Consensus       226 ~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence            35788889999999999999999999999999998765    3567788999999999999778888764  57999999


Q ss_pred             EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ||+.+++++..+.+...+.++.|+|+++.|++++   ++.|+|||+.+++.+.   .+.+|...|++++|+|||++|+++
T Consensus       306 wd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~---~l~gH~~~V~~l~~spdg~~l~S~  382 (420)
T 4gga_A          306 WNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---ELKGHTSRVLSLTMSPDGATVASA  382 (420)
T ss_dssp             EETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEE
Confidence            9999999999998889999999999999988876   3559999999987654   678899999999999999988877


Q ss_pred             Ee-----eCCcc
Q 004785          254 AE-----VNDLD  260 (730)
Q Consensus       254 gs-----vwdl~  260 (730)
                      +.     +|++.
T Consensus       383 s~D~tvriWdv~  394 (420)
T 4gga_A          383 AADETLRLWRCF  394 (420)
T ss_dssp             ETTTEEEEECCS
T ss_pred             ecCCeEEEEECC
Confidence            64     55554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.83  E-value=6.7e-19  Score=192.46  Aligned_cols=181  Identities=15%  Similarity=0.286  Sum_probs=153.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      -++..+++++.|++|++||..++    .+.+|...|.+++|  ++++|++|+.|++|++||+.+++.+..+.+|...|.+
T Consensus       141 ~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  218 (435)
T 1p22_A          141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH  218 (435)
T ss_dssp             CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE
T ss_pred             ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEE
Confidence            36789999999999999999876    47799999999999  7899999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEE---EE-ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCe
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECI---GS-RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPR  229 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i---~~-l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~  229 (730)
                      ++|++   +++++++.|++|++||+.+++..   .. ..|...|.+++|  ++++|++++.+ .|++||+++++...   
T Consensus       219 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~---  290 (435)
T 1p22_A          219 LRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVR---  290 (435)
T ss_dssp             EECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEE---
T ss_pred             EEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEE---
Confidence            99975   59999999999999999987654   22 458889999999  78899999955 59999999887644   


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEecc
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATS  271 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~  271 (730)
                      .+..|...|.++.|+  ++++++++.     +|++..+.....+..+
T Consensus       291 ~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h  335 (435)
T 1p22_A          291 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH  335 (435)
T ss_dssp             EEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence            677899999999994  666666654     7888776655555433

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.83  E-value=2.2e-18  Score=188.40  Aligned_cols=245  Identities=14%  Similarity=0.161  Sum_probs=190.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      +..+++++.|++|++||..++    .+.+|...|.++.|+  ++.|++++.|++|++||+.+++.+..+.+|...|.+++
T Consensus       169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  246 (445)
T 2ovr_B          169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ  246 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEE
Confidence            678999999999999999876    477999999999995  67899999999999999999999999999999999999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecC
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT  234 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h  234 (730)
                      |   +++++++++.|+.|++||+++++.+..+. |...|.++.|  ++++|++++. +.|++||+++++...   .+..|
T Consensus       247 ~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~  318 (445)
T 2ovr_B          247 Y---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGH  318 (445)
T ss_dssp             E---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCC
T ss_pred             E---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCC
Confidence            9   56889999999999999999999888875 8889999999  7899999995 559999999887644   56778


Q ss_pred             CCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccC---------------CCCeEEEecCCCCCCCC
Q 004785          235 RRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRY---------------PPPVICMAGAHSSSHPG  294 (730)
Q Consensus       235 ~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~---------------p~~~V~l~d~~s~d~~~  294 (730)
                      ...+.++.++  ++++++++.     +|++..+.....+....++...               ....+.+|+..++....
T Consensus       319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence            8889888874  566666654     7888776665555543222110               13457778876665433


Q ss_pred             ccc--ccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecC
Q 004785          295 LAE--EVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLR  337 (730)
Q Consensus       295 L~~--~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~  337 (730)
                      ...  .......+++.+.|+||+..+++...+......+..++.+
T Consensus       397 ~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          397 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             eeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            331  1122344567899999998888866555444455555554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.1e-18  Score=176.22  Aligned_cols=171  Identities=12%  Similarity=0.142  Sum_probs=144.8

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC-------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC-------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL  145 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~-------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l  145 (730)
                      ..++....+..|++++.|+.|++|++...       .+.+|...|.++.|  ++++|++++.|+.|++||  .++.+..+
T Consensus        63 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~  138 (313)
T 3odt_A           63 NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNL  138 (313)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEE
T ss_pred             EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEec
Confidence            33444567889999999999999998653       36789999999999  688999999999999999  78888999


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMR  222 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~  222 (730)
                      ..|...|.++.|+|.+++++++++.|+.|++||.  ++....+.  +...+.+++|+|+++ |++++ ++.|++||++++
T Consensus       139 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~  215 (313)
T 3odt_A          139 QAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG  215 (313)
T ss_dssp             ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred             ccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence            9999999999999878899999999999999994  44444443  888999999999999 66777 555999999988


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +...   .+..|...|.+++|+|++. +++++
T Consensus       216 ~~~~---~~~~~~~~i~~~~~~~~~~-l~~~~  243 (313)
T 3odt_A          216 DVLR---TYEGHESFVYCIKLLPNGD-IVSCG  243 (313)
T ss_dssp             CEEE---EEECCSSCEEEEEECTTSC-EEEEE
T ss_pred             hhhh---hhhcCCceEEEEEEecCCC-EEEEe
Confidence            7644   6677999999999999994 66554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.83  E-value=7.9e-19  Score=192.86  Aligned_cols=232  Identities=14%  Similarity=0.118  Sum_probs=172.9

Q ss_pred             CCEEEEEeCC------CeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEECCCCeEEEEEecC
Q 004785           81 RRGLASWVEA------ESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        81 g~~L~Sgs~D------gsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~Dg---tVrVWDl~tg~~l~~l~gH  148 (730)
                      +..++..+.+      +.|++||.+..   .+.+|...|.+++|+|||++|++++.|+   .|++||+.+++.. .+..|
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~  221 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF  221 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence            4556655554      79999998754   3668999999999999999999999875   9999999999865 56778


Q ss_pred             CCCcEEEEEccCCCCEEE-EEeCCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C---eEEEEEcCC
Q 004785          149 RRTPWVVRFHPLNPTIIA-SGSLDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H---KLYIWRYNM  221 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLa-SgS~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d---~I~VWDl~t  221 (730)
                      .+.+.+++|+| +++.|+ +++.|+.  |++||+.+++......+...+.+++|+|||++|+++++ +   .|++||+.+
T Consensus       222 ~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            88999999999 777665 7776665  99999999988766678889999999999999998884 3   388889887


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~  301 (730)
                      ++.    ..+..+...+..++|+|||++|++++....                    ...+.+++..++....+...   
T Consensus       301 ~~~----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g--------------------~~~i~~~d~~~~~~~~l~~~---  353 (415)
T 2hqs_A          301 GAP----QRITWEGSQNQDADVSSDGKFMVMVSSNGG--------------------QQHIAKQDLATGGVQVLSST---  353 (415)
T ss_dssp             SCC----EECCCSSSEEEEEEECTTSSEEEEEEECSS--------------------CEEEEEEETTTCCEEECCCS---
T ss_pred             CCE----EEEecCCCcccCeEECCCCCEEEEEECcCC--------------------ceEEEEEECCCCCEEEecCC---
Confidence            653    234456678899999999998887764311                    02466666555443222211   


Q ss_pred             CCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceee
Q 004785          302 ITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       302 ~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                       . ....+.|+|||+.|++...+.. ...++.+++++....+|
T Consensus       354 -~-~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~g~~~~~l  393 (415)
T 2hqs_A          354 -F-LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDGRFKARL  393 (415)
T ss_dssp             -S-SCEEEEECTTSSEEEEEEEETT-EEEEEEEETTSCCEEEC
T ss_pred             -C-CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECCCCcEEEe
Confidence             1 4568999999999998654332 23566666665544444

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.83  E-value=5.6e-20  Score=210.27  Aligned_cols=230  Identities=10%  Similarity=0.022  Sum_probs=168.6

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC--CCCCCCC-----CeEEEEECCCCCEEEEEeCCCeEEEEECCCCe----
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC--PLSPPPR-----STIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----  140 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~-----~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~----  140 (730)
                      ....+.+.++..|++++.|+.|++||.+..  .+. |..     .|.+++|||||++||+|+.||+|+|||+.+++    
T Consensus        88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~  166 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP  166 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence            444555678899999999999999996543  345 554     59999999999999999999999999999885    


Q ss_pred             ---EEEEE----ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE---EEe--cCCCCeEEEEEcCCCCEEEE
Q 004785          141 ---CLKVL----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI---GSR--DFYRPIASIAFHASGELLAV  208 (730)
Q Consensus       141 ---~l~~l----~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i---~~l--~h~~~V~sVafSPdG~~LAs  208 (730)
                         .+..+    .+|...|.+++|+| ++  +++++.|++|++||+.+++..   ..+  .|...|.+++|+  |+.||+
T Consensus       167 ~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LAS  241 (588)
T 2j04_A          167 EFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVL  241 (588)
T ss_dssp             CCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEE
T ss_pred             cceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEE
Confidence               36776    67778999999999 66  888899999999999987742   344  477899999999  689999


Q ss_pred             EECCeEEEEEcCCCccccCCeEEecCCCCeEEEEE--ccCCCeEEEEEe----eCCccCCCcceeEeccCCccc-CCCCe
Q 004785          209 ASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHF--HPHAAPLLLTAE----VNDLDSSESSLTLATSPGYWR-YPPPV  281 (730)
Q Consensus       209 gSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaF--SPdG~~Llatgs----vwdl~s~~~~~~l~t~sG~~~-~p~~~  281 (730)
                      +++++|++||+..+....   ...+|...|..+.|  +||+..++++.+    +|..+.    .. ....+... .....
T Consensus       242 a~~~tIkLWd~~~~~~~~---~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~----~~-~spd~~l~a~~d~~  313 (588)
T 2j04_A          242 TCPGYVHKIDLKNYSISS---LKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDE----LH-VTADNIIAPYLEKK  313 (588)
T ss_dssp             ECSSEEEEEETTTTEEEE---EECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSS----EE-EECCCSSHHHHHHH
T ss_pred             EeCCeEEEEECCCCeEEE---EEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeecc----EE-ECCCceEEEEcCCE
Confidence            998889999998876522   34489999999999  999987666542    555441    11 11111100 01123


Q ss_pred             EEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       282 V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      +.+|+..... .....    ....+..++|||||+.+++
T Consensus       314 v~lW~~~g~~-l~~~~----~~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          314 FKKWSTIWNE-FNNYE----TTLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             HHHTTTTTTS-SSSSC----CEEEEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCc-eeeec----cceEEEEEEECCCCCEEEE
Confidence            4556533222 11111    1223447999999999997

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.83  E-value=6.9e-19  Score=193.50  Aligned_cols=161  Identities=11%  Similarity=0.115  Sum_probs=135.7

Q ss_pred             CCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECC--CCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          105 PPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQ--TGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~--tg~~l~~l~--gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      +|.+.|.+++|+|++++| ++++.|+.|+|||+.  +++.+..+.  .|...|.+++|+| ++++|++++.|+.|++||+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEec
Confidence            455689999999999996 899999999999999  888888886  5678899999999 9999999999999999999


Q ss_pred             CCCeEEE----E-ecCCCCeEEEEEcCC---CCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          180 STAECIG----S-RDFYRPIASIAFHAS---GELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       180 ~tg~~i~----~-l~h~~~V~sVafSPd---G~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      .+++...    . ..|...|.+++|+|+   +++|++++.+ .|++||+++++...  ....+|...|.+++|+ ++++|
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--KWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE--EECCCCSSCEEEEEEC-STTEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee--eeecCCCCceEEEEEC-CCCEE
Confidence            9877553    3 458899999999999   9999999955 59999999876533  1245799999999999 99988


Q ss_pred             EEEEe-----eCCccCCCcceeEe
Q 004785          251 LLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       251 latgs-----vwdl~s~~~~~~l~  269 (730)
                      ++++.     +|++..++....+.
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeec
Confidence            87664     88888776555443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.82  E-value=5.3e-19  Score=183.81  Aligned_cols=176  Identities=10%  Similarity=0.048  Sum_probs=144.7

Q ss_pred             EEEecCCC-EEEEEeCCCeEEEEeC-CCC---CCCC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC---------
Q 004785           75 EAGRDARR-GLASWVEAESLHHLRP-KYC---PLSP--PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT---------  138 (730)
Q Consensus        75 ~a~~d~g~-~L~Sgs~DgsIrlWd~-~t~---~L~g--H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t---------  138 (730)
                      ++....+. .|++++.|+.|++||. .++   .+.+  |...|.+++|+| +++|++++.|+.|++||+.+         
T Consensus        62 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             EEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             EEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence            33444677 8999999999999999 776   4677  999999999999 99999999999999999987         


Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEE---EEecCCCCeEEEEEcC-CCCEEEEEECC-
Q 004785          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECI---GSRDFYRPIASIAFHA-SGELLAVASGH-  212 (730)
Q Consensus       139 g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i---~~l~h~~~V~sVafSP-dG~~LAsgSdd-  212 (730)
                      ++++..+. |...|.+++|+| +.  +++++.|+.|++||+++ +...   ....+...+.+++|+| ++++|++++.+ 
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             CCeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence            76666666 889999999998 44  99999999999999998 5432   3345788999999999 99999999955 


Q ss_pred             eEEEEEcCCC--cc-ccCCeEEecCCC---------CeEEEEEccCCCeEEEEEe
Q 004785          213 KLYIWRYNMR--EE-TSSPRIVLRTRR---------SLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       213 ~I~VWDl~t~--~~-~~~~~~l~~h~~---------~V~sVaFSPdG~~Llatgs  255 (730)
                      .|++||++..  .. ......+..|..         .|.+++|+|+++++++++.
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  271 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS  271 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET
T ss_pred             cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC
Confidence            5999999876  10 012345556654         9999999999998877664

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.82  E-value=3.2e-19  Score=193.60  Aligned_cols=197  Identities=13%  Similarity=0.109  Sum_probs=156.9

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCC---CCC--------------CCC--CCCCeEEEE--ECCCCCEEEEEeCCCeE
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPK---YCP--------------LSP--PPRSTIAAA--FSPDGKTLASTHGDHTV  131 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~---t~~--------------L~g--H~~~Vt~la--fSPDG~~LaSgS~DgtV  131 (730)
                      ..++....+..|++++.|++|++||+.   .++              +..  +...+.++.  +++++.+|++++.|+.|
T Consensus       115 ~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  194 (437)
T 3gre_A          115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRV  194 (437)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred             EEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeE
Confidence            334445578899999999999999984   221              112  667788888  66899999999999999


Q ss_pred             EEEECCCCeEEEEEec--CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEc----CCC
Q 004785          132 KIIDCQTGSCLKVLHG--HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFH----ASG  203 (730)
Q Consensus       132 rVWDl~tg~~l~~l~g--H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafS----PdG  203 (730)
                      ++||+++++.+..+.+  |.+.|.+++|+| +++++++++.|++|++||+++++++..+  .+...|.+++|+    |++
T Consensus       195 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~  273 (437)
T 3gre_A          195 IIFDIRTLERLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS  273 (437)
T ss_dssp             EEEETTTCCEEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTE
T ss_pred             EEEeCCCCeeeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCc
Confidence            9999999999999998  899999999999 8999999999999999999999998876  577789999665    467


Q ss_pred             CEEEEEECCe-EEEEEcCCCccccCCe---------------------EEec--CCCCeEEEEEccCCCeEEEEEe----
Q 004785          204 ELLAVASGHK-LYIWRYNMREETSSPR---------------------IVLR--TRRSLRAVHFHPHAAPLLLTAE----  255 (730)
Q Consensus       204 ~~LAsgSdd~-I~VWDl~t~~~~~~~~---------------------~l~~--h~~~V~sVaFSPdG~~Llatgs----  255 (730)
                      ++|++++.++ |+|||+++++......                     .+.+  |...|++++|+ +++++++++.    
T Consensus       274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i  352 (437)
T 3gre_A          274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSI  352 (437)
T ss_dssp             EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEE
T ss_pred             cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeE
Confidence            8999999665 9999999876433100                     0111  56678999999 7776666553    


Q ss_pred             -eCCccCCCcceeEecc
Q 004785          256 -VNDLDSSESSLTLATS  271 (730)
Q Consensus       256 -vwdl~s~~~~~~l~t~  271 (730)
                       +|++..++....+..+
T Consensus       353 ~~wd~~~~~~~~~~~~~  369 (437)
T 3gre_A          353 VMFSLNELSSSKAVISP  369 (437)
T ss_dssp             EEEETTCGGGCEEEECC
T ss_pred             EEEECCCcccceEEecc
Confidence             8888877776666654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.82  E-value=5.7e-19  Score=193.55  Aligned_cols=175  Identities=16%  Similarity=0.208  Sum_probs=144.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC-----------CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCC---eEEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYC-----------PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTG---SCLKVL  145 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~-----------~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg---~~l~~l  145 (730)
                      ...|++++.|++|++|++...           .+.+|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~  273 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV  273 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence            338999999999999999762           2568999999999999 7889999999999999999987   577888


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEEEEe-cCCCCeEEEEEcCCCC-EEEEEEC-CeEEEEEcCC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSR-DFYRPIASIAFHASGE-LLAVASG-HKLYIWRYNM  221 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l-~h~~~V~sVafSPdG~-~LAsgSd-d~I~VWDl~t  221 (730)
                      ..|...|.+++|+|++..++++++.|++|++||+++ ++.+..+ .|...|.+++|+|+++ +|++++. +.|+|||+..
T Consensus       274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            899999999999995555899999999999999998 4555555 4889999999999996 6888874 5599999987


Q ss_pred             Cccc-----------cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          222 REET-----------SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       222 ~~~~-----------~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ....           .......+|...|++++|+|+++++++++.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            3211           112344567889999999999995555554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.82  E-value=3.1e-18  Score=182.46  Aligned_cols=229  Identities=13%  Similarity=0.173  Sum_probs=167.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           82 RGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      ..+++++.|+.|++||..+++    +..| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            467788899999999998873    3344 459999999999977 667789999999999999998888665 799999


Q ss_pred             EccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEE-EEE-CCeEEEEEcCCCccccCCeEEec
Q 004785          157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA-VAS-GHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       157 fSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LA-sgS-dd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      |+| +++++ ++++.|+.|++||+.+++.+..+.+...+.+++|+|+|++|+ +++ ++.|++||+.+++...    ...
T Consensus        81 ~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~----~~~  155 (391)
T 1l0q_A           81 VSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVS  155 (391)
T ss_dssp             ECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEE
T ss_pred             ECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE----EEe
Confidence            999 66655 566678999999999999988888888899999999999874 555 4559999998876543    233


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe------eCCccCCCcceeEecc----------CCcccC------CCCeEEEecCCCCC
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATS----------PGYWRY------PPPVICMAGAHSSS  291 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~~~~l~t~----------sG~~~~------p~~~V~l~d~~s~d  291 (730)
                      ....+..++|+|+|+++++++.      +|++........+...          .|..-+      ....+.+|+...+.
T Consensus       156 ~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          156 VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            3467799999999998866543      7777655433332211          111000      12456666655443


Q ss_pred             CCCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          292 HPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       292 ~~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                      .......    ......+.|++|+++|++.
T Consensus       236 ~~~~~~~----~~~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          236 ITARIPV----GPDPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             EEEEEEC----CSSEEEEEECTTSSEEEEE
T ss_pred             EEEEEec----CCCccEEEEccCCCEEEEE
Confidence            3222221    1223568999999999763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.82  E-value=1.2e-18  Score=190.63  Aligned_cols=172  Identities=19%  Similarity=0.209  Sum_probs=153.1

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ...+..+++++.|+.|++||+.++    .+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.
T Consensus       277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~  356 (464)
T 3v7d_B          277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG  356 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEE
Confidence            345789999999999999999876    4778999999999999999999999999999999999999999999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      +++|++   +++++++.|++|++||+.+++......+...+..++|++++++|++++++.|++||+++++.+.  .....
T Consensus       357 ~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~--~~~~~  431 (464)
T 3v7d_B          357 LLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANILK  431 (464)
T ss_dssp             EEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEE--SCTTT
T ss_pred             EEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEe--hhhcc
Confidence            999964   8999999999999999999988888888888999999999999999998889999999987644  12456


Q ss_pred             CCCCeEEEEEccCCCeEEEEEee
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAEV  256 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgsv  256 (730)
                      |...|.+++|+  ++.+++++..
T Consensus       432 ~~~~v~~v~~~--~~~l~~~~~~  452 (464)
T 3v7d_B          432 DADQIWSVNFK--GKTLVAAVEK  452 (464)
T ss_dssp             TCSEEEEEEEE--TTEEEEEEEE
T ss_pred             CCCcEEEEEec--CCEEEEEEEe
Confidence            78899999997  5667766653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.82  E-value=2.7e-18  Score=192.64  Aligned_cols=171  Identities=11%  Similarity=0.065  Sum_probs=145.3

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----C----CCCCCCC-eEEEEECC--CCCEEEEEeCCCeEEEEECCCC-------
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----P----LSPPPRS-TIAAAFSP--DGKTLASTHGDHTVKIIDCQTG-------  139 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~----L~gH~~~-Vt~lafSP--DG~~LaSgS~DgtVrVWDl~tg-------  139 (730)
                      ..++..|+.+. ++.|++||..++    .    +.+|... |++++|+|  |+++|++++.|+.|++||+.++       
T Consensus        27 spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~  105 (615)
T 1pgu_A           27 DPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE  105 (615)
T ss_dssp             ETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE
T ss_pred             CCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc
Confidence            34677788777 889999999865    3    6789999 99999999  9999999999999999999755       


Q ss_pred             -eEEEEEecCCCCcEEEEEccCCCCEEEEEeCC----CcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCC-EEEEEEC-
Q 004785          140 -SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWNASTAECIGSR-DFYRPIASIAFHASGE-LLAVASG-  211 (730)
Q Consensus       140 -~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D----gtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~-~LAsgSd-  211 (730)
                       +.+..+..|...|.+++|+| +++++++++.|    +.|++||  +++.+..+ .|...|.+++|+|+++ +|++++. 
T Consensus       106 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  182 (615)
T 1pgu_A          106 VNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD  182 (615)
T ss_dssp             EEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             ccccchhhcccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence             67788899999999999999 89999999988    6888888  45555554 5889999999999998 7888885 


Q ss_pred             CeEEEEEcCCCccccCCeEEecCCC---CeEEEEEccC-CCeEEEEEe
Q 004785          212 HKLYIWRYNMREETSSPRIVLRTRR---SLRAVHFHPH-AAPLLLTAE  255 (730)
Q Consensus       212 d~I~VWDl~t~~~~~~~~~l~~h~~---~V~sVaFSPd-G~~Llatgs  255 (730)
                      +.|++||+.+.+...   .+..|..   .|.+++|+|+ ++++++++.
T Consensus       183 ~~v~vwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          183 GSVVFYQGPPFKFSA---SDRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             TEEEEEETTTBEEEE---EECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             CcEEEEeCCCcceee---eecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            559999998877544   5667888   9999999999 997777654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.82  E-value=7.1e-19  Score=193.42  Aligned_cols=175  Identities=14%  Similarity=0.072  Sum_probs=147.8

Q ss_pred             EEEecCCCEE-EEEeCCCeEEEEeCC--CCC----CC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--
Q 004785           75 EAGRDARRGL-ASWVEAESLHHLRPK--YCP----LS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--  143 (730)
Q Consensus        75 ~a~~d~g~~L-~Sgs~DgsIrlWd~~--t~~----L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--  143 (730)
                      ++....+..| ++++.|+.|++||+.  ++.    +.  .|...|++++|+|++++|++++.|+.|++|++.+++...  
T Consensus       108 ~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~  187 (450)
T 2vdu_B          108 LRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT  187 (450)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence            3344566675 899999999999988  552    32  677899999999999999999999999999998877544  


Q ss_pred             --EEecCCCCcEEEEEccCC---CCEEEEEeCCCcEEEEECCCCeEEEE-e-cCCCCeEEEEEcCCCCEEEEEECC-eEE
Q 004785          144 --VLHGHRRTPWVVRFHPLN---PTIIASGSLDHEVRLWNASTAECIGS-R-DFYRPIASIAFHASGELLAVASGH-KLY  215 (730)
Q Consensus       144 --~l~gH~~~V~sVafSP~d---g~lLaSgS~DgtVrLWDl~tg~~i~~-l-~h~~~V~sVafSPdG~~LAsgSdd-~I~  215 (730)
                        .+.+|...|.+++|+| +   +.+|++++.|++|++||+.+++.+.. + .|...|.+++|+ +|++|++++.+ .|+
T Consensus       188 ~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~  265 (450)
T 2vdu_B          188 QEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIF  265 (450)
T ss_dssp             CCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEE
T ss_pred             ceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEE
Confidence              7789999999999999 7   88999999999999999999987766 3 588999999999 99999999955 599


Q ss_pred             EEEcCCCccccCCeEEe-------------------------cCCCCeEEEEEccCCCeEEEEE
Q 004785          216 IWRYNMREETSSPRIVL-------------------------RTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~-------------------------~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      |||+++++...   .+.                         .....|..++|+|+++++++++
T Consensus       266 vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          266 AWDWKTGKNLS---TFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             EEETTTCCEEE---EEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             EEECCCCcEee---eecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            99999887543   221                         2346799999999999888876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.82  E-value=1.2e-18  Score=181.42  Aligned_cols=177  Identities=13%  Similarity=0.139  Sum_probs=142.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAF--SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~laf--SPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      +.....+..|++++.|+.|++||..++   .+.+|...|.+++|  ++++++|++++.|+.|++||+++++.+..+..|.
T Consensus        92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~  171 (368)
T 3mmy_A           92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE  171 (368)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred             EEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence            334457789999999999999999877   35679999999999  8999999999999999999999988777776543


Q ss_pred             -----------------------------------------CCcEEEEEccCCCC----EEEEEeCCCcEEEEECCCC--
Q 004785          150 -----------------------------------------RTPWVVRFHPLNPT----IIASGSLDHEVRLWNASTA--  182 (730)
Q Consensus       150 -----------------------------------------~~V~sVafSP~dg~----lLaSgS~DgtVrLWDl~tg--  182 (730)
                                                               ..+.++.+.+ +..    .+++++.|+.|++||+...  
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~  250 (368)
T 3mmy_A          172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP  250 (368)
T ss_dssp             CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH
T ss_pred             CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc
Confidence                                                     2234444444 222    2899999999999999886  


Q ss_pred             -eEEEEec-CCC------------CeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCC
Q 004785          183 -ECIGSRD-FYR------------PIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHA  247 (730)
Q Consensus       183 -~~i~~l~-h~~------------~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG  247 (730)
                       +.+..+. |..            .|.+++|+|+|++|++++.+ .|+|||+++++...   .+..|...|.+++|+|+|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~g  327 (368)
T 3mmy_A          251 AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---TSEQLDQPISACCFNHNG  327 (368)
T ss_dssp             HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---ECCCCSSCEEEEEECTTS
T ss_pred             cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---EecCCCCCceEEEECCCC
Confidence             3333332 332            69999999999999999955 59999999887644   566889999999999999


Q ss_pred             CeEEEEEe
Q 004785          248 APLLLTAE  255 (730)
Q Consensus       248 ~~Llatgs  255 (730)
                      ++|++++.
T Consensus       328 ~~l~~~s~  335 (368)
T 3mmy_A          328 NIFAYASS  335 (368)
T ss_dssp             SCEEEEEC
T ss_pred             CeEEEEec
Confidence            98888776

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.81  E-value=3.4e-18  Score=191.82  Aligned_cols=183  Identities=12%  Similarity=0.095  Sum_probs=155.0

Q ss_pred             EEEEEec--CCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEE
Q 004785           73 IFEAGRD--ARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHGD----HTVKII  134 (730)
Q Consensus        73 ll~a~~d--~g~~L~Sgs~DgsIrlWd~~t~------------~L~gH~~~Vt~lafSPDG~~LaSgS~D----gtVrVW  134 (730)
                      ...+...  ++..|++++.|+.|++||..++            .+..|...|.+++|+|++++|++++.|    +.|++|
T Consensus        68 ~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~  147 (615)
T 1pgu_A           68 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW  147 (615)
T ss_dssp             EEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEET
T ss_pred             EEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEE
Confidence            3344455  7889999999999999999633            366799999999999999999999988    688888


Q ss_pred             ECCCCeEEEEEecCCCCcEEEEEccCCCC-EEEEEeCCCcEEEEECCCCeEEEEec-CCC---CeEEEEEcCC-CCEEEE
Q 004785          135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNASTAECIGSRD-FYR---PIASIAFHAS-GELLAV  208 (730)
Q Consensus       135 Dl~tg~~l~~l~gH~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~---~V~sVafSPd-G~~LAs  208 (730)
                      |  +++.+..+.+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. |..   .|.+++|+|+ +++|++
T Consensus       148 d--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (615)
T 1pgu_A          148 D--SGNSLGEVSGHSQRINACHLKQ-SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT  224 (615)
T ss_dssp             T--TCCEEEECCSCSSCEEEEEECS-SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE
T ss_pred             E--CCCcceeeecCCccEEEEEECC-CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEE
Confidence            8  6778899999999999999999 555 89999999999999999999888875 777   8999999999 999999


Q ss_pred             EEC-CeEEEEEcCCCccccCCeEE-e---cCCCCeEEEEEccCCCeEEEEEe-----eCCccCC
Q 004785          209 ASG-HKLYIWRYNMREETSSPRIV-L---RTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSS  262 (730)
Q Consensus       209 gSd-d~I~VWDl~t~~~~~~~~~l-~---~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~  262 (730)
                      ++. +.|++||+++++...   .+ .   .|...|.+++|+ +++++++++.     +|++..+
T Consensus       225 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          225 VGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             EETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred             EeCCCeEEEEECCCCCEeE---EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence            995 459999999887544   33 3   789999999999 9998777664     5555533

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.81  E-value=2e-18  Score=186.43  Aligned_cols=214  Identities=10%  Similarity=0.068  Sum_probs=165.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~---------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      ++..++++..++.|++||..+++         +.+|...|.+++|+++++++++++.|+.|++||+++++.+..+..|..
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~  212 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK  212 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence            55667777788899999998763         337888999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE---------CCeEEEEEcC
Q 004785          151 TPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS---------GHKLYIWRYN  220 (730)
Q Consensus       151 ~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS---------dd~I~VWDl~  220 (730)
                      .+.+++|+| +++.+ ++++.|+.|++||+++++.+..+.....+.+++|+|+|++|++++         ++.|++||+.
T Consensus       213 ~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~  291 (433)
T 3bws_A          213 WSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD  291 (433)
T ss_dssp             SEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred             CeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence            999999999 66655 566689999999999999988888777899999999999998887         3459999999


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccC
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVP  300 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~  300 (730)
                      +++...    ...+...+..++|+|+++++++++...                      ..+.+|+..+........   
T Consensus       292 ~~~~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~----------------------~~v~v~d~~~~~~~~~~~---  342 (433)
T 3bws_A          292 KEKLID----TIGPPGNKRHIVSGNTENKIYVSDMCC----------------------SKIEVYDLKEKKVQKSIP---  342 (433)
T ss_dssp             TTEEEE----EEEEEECEEEEEECSSTTEEEEEETTT----------------------TEEEEEETTTTEEEEEEE---
T ss_pred             CCcEEe----eccCCCCcceEEECCCCCEEEEEecCC----------------------CEEEEEECCCCcEEEEec---
Confidence            876533    345556889999999999877765310                      123333332221111111   


Q ss_pred             CCCCCceeeeEecCCCEEEEEecC
Q 004785          301 LITPPFLRPSFVRDDERISLQHTE  324 (730)
Q Consensus       301 ~~slpil~p~FSpDg~rI~~~~~~  324 (730)
                       .......++|++|++.+++....
T Consensus       343 -~~~~~~~~~~s~dg~~l~~~~~~  365 (433)
T 3bws_A          343 -VFDKPNTIALSPDGKYLYVSCRG  365 (433)
T ss_dssp             -CSSSEEEEEECTTSSEEEEEECC
T ss_pred             -CCCCCCeEEEcCCCCEEEEEecC
Confidence             11234478999999999885543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1.6e-18  Score=177.23  Aligned_cols=166  Identities=13%  Similarity=0.162  Sum_probs=143.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~~~V~sV  155 (730)
                      .+..+++++.|+.|++||....  .+..|...|.++.|++ ++++|++++.|+.|++||  .++.+..+.. |...|.++
T Consensus       113 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~  190 (313)
T 3odt_A          113 QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHL  190 (313)
T ss_dssp             ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEE
T ss_pred             cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEE
Confidence            4678999999999999993322  4678999999999998 999999999999999999  5677778877 99999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      +|+| ++. +++++.|+.|++||+++++.+..+. |...|.+++|+|+|+ |++++ ++.|++||+++++...   .+..
T Consensus       191 ~~~~-~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---~~~~  264 (313)
T 3odt_A          191 AVVD-DGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQ---VITL  264 (313)
T ss_dssp             EEEE-TTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEE---EEEC
T ss_pred             EEcC-CCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeE---EEec
Confidence            9999 666 9999999999999999999888765 889999999999995 66666 5669999999887644   6677


Q ss_pred             CCCCeEEEEEccCCCeEEEEE
Q 004785          234 TRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatg  254 (730)
                      |...|.+++|+|+++ +++++
T Consensus       265 ~~~~i~~~~~~~~~~-~~~~~  284 (313)
T 3odt_A          265 PAISIWSVDCMSNGD-IIVGS  284 (313)
T ss_dssp             SSSCEEEEEECTTSC-EEEEE
T ss_pred             cCceEEEEEEccCCC-EEEEe
Confidence            888999999999998 55544

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.81  E-value=4.3e-19  Score=214.36  Aligned_cols=160  Identities=8%  Similarity=0.070  Sum_probs=134.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC---------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC-----
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLS---------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG-----  139 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~---------------gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg-----  139 (730)
                      .+..|++++.|++|++||+.++.+.               +|...|++++|+|||++||+|+.|++|+|||+.++     
T Consensus       446 dg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~  525 (902)
T 2oaj_A          446 YGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV  525 (902)
T ss_dssp             EEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred             cCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence            4678999999999999999876432               78899999999999999999999999999999776     


Q ss_pred             ----------------------------------------eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          140 ----------------------------------------SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       140 ----------------------------------------~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                                                              +++..+.+|.+.|++|+|+| ++ +|++|+.|++|+|||+
T Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~  603 (902)
T 2oaj_A          526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDR  603 (902)
T ss_dssp             ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEET
T ss_pred             cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEEC
Confidence                                                    24678889999999999999 88 9999999999999999


Q ss_pred             CCCeEEEE-----e--cCCCCeEEEEEc-----CCC---CEEEEEECC-eEEEEEc---CCCccccCCeEEecC-----C
Q 004785          180 STAECIGS-----R--DFYRPIASIAFH-----ASG---ELLAVASGH-KLYIWRY---NMREETSSPRIVLRT-----R  235 (730)
Q Consensus       180 ~tg~~i~~-----l--~h~~~V~sVafS-----PdG---~~LAsgSdd-~I~VWDl---~t~~~~~~~~~l~~h-----~  235 (730)
                      +++..+..     +  .|...|++++|+     |||   ++|++|+.+ .|++||+   .+++...   .+.+|     .
T Consensus       604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~---~~~~~~~~~~~  680 (902)
T 2oaj_A          604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDV---QLMDITNVTSK  680 (902)
T ss_dssp             TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEE---EEEEEEECCSS
T ss_pred             CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEE---EecCceecCCC
Confidence            88876542     2  577889999999     886   799999955 5999999   5555332   33333     5


Q ss_pred             CCeEEEE-Ec
Q 004785          236 RSLRAVH-FH  244 (730)
Q Consensus       236 ~~V~sVa-FS  244 (730)
                      ..|..+. |+
T Consensus       681 ~~v~~i~~~~  690 (902)
T 2oaj_A          681 GPIHKIDAFS  690 (902)
T ss_dssp             CCCCEEEEEE
T ss_pred             CceEEEEeEe
Confidence            7787777 76

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.80  E-value=1.8e-17  Score=170.16  Aligned_cols=180  Identities=20%  Similarity=0.320  Sum_probs=150.4

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC---------------------------------------------CCCCCC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC---------------------------------------------PLSPPP  107 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~---------------------------------------------~L~gH~  107 (730)
                      ..++....+..|++++.|++|++|+..++                                             .+.+|.
T Consensus        71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (318)
T 4ggc_A           71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS  150 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc
Confidence            44555667788888888888888887642                                             134688


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe----EEEEEecCCCCcEEEEEccCCCCEEE--EEeCCCcEEEEECCC
Q 004785          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIA--SGSLDHEVRLWNAST  181 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~----~l~~l~gH~~~V~sVafSP~dg~lLa--SgS~DgtVrLWDl~t  181 (730)
                      ..+.++.|++++++|++++.|++|++||+.+++    .......|.+.|..+.++|.+.+++.  +++.|++|++||...
T Consensus       151 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred             CceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence            899999999999999999999999999998865    34566778899999999996666654  566789999999999


Q ss_pred             CeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          182 AECIGSRDFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       182 g~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ........+...+..+.|+|+++.+++++   ++.|+|||+++++.+.   .+.+|...|++++|+|||++|++++.
T Consensus       231 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~---~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA---ELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             CCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             ccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            99888888999999999999999888776   3459999999988654   67889999999999999998887664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.7e-18  Score=204.40  Aligned_cols=181  Identities=13%  Similarity=0.152  Sum_probs=151.4

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCe--EEEEEecCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRR  150 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~--~l~~l~gH~~  150 (730)
                      +..|++++.|++|++||..++      .+.+|...|++++|+|+  +++|++|+.|+.|++||+.++.  ....+.+|..
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~  146 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence            789999999999999998876      36789999999999999  9999999999999999998873  4466788999


Q ss_pred             CcEEEEEccC------------CCCEEEEEeCCCcEEEEECCCCe----EEEEe-cCCCCeEEEEEcCC---CCEEEEEE
Q 004785          151 TPWVVRFHPL------------NPTIIASGSLDHEVRLWNASTAE----CIGSR-DFYRPIASIAFHAS---GELLAVAS  210 (730)
Q Consensus       151 ~V~sVafSP~------------dg~lLaSgS~DgtVrLWDl~tg~----~i~~l-~h~~~V~sVafSPd---G~~LAsgS  210 (730)
                      .|.+++|+|.            ++.++++++.||+|++||++++.    ....+ .|...|.+++|+|+   +++|++++
T Consensus       147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s  226 (753)
T 3jro_A          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  226 (753)
T ss_dssp             CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence            9999999994            48899999999999999998873    33333 48899999999999   89999999


Q ss_pred             CC-eEEEEEcCCCcccc--CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccC
Q 004785          211 GH-KLYIWRYNMREETS--SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDS  261 (730)
Q Consensus       211 dd-~I~VWDl~t~~~~~--~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s  261 (730)
                      .+ .|++||++++....  .......|...|++++|+|+|+++++++.     +|++..
T Consensus       227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            55 59999998864211  11223457889999999999998887765     676663

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.80  E-value=2e-18  Score=208.46  Aligned_cols=184  Identities=13%  Similarity=0.083  Sum_probs=151.6

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      ..++....+..|++++.|++|++|+.....   ...|...|.+++|+| |++|++++.|++|+|||+.+++.+..+. |.
T Consensus        21 ~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~   98 (902)
T 2oaj_A           21 IAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VP   98 (902)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CS
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CC
Confidence            344555678899999999999999987653   235788999999999 8899999999999999999999998886 66


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE------------ecCCCCeEEEEEcCC-CCEEEEEECCe-EE
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS------------RDFYRPIASIAFHAS-GELLAVASGHK-LY  215 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~------------l~h~~~V~sVafSPd-G~~LAsgSdd~-I~  215 (730)
                      +.|++++|+| +++++++|+.||+|++||+.+++....            ..|.+.|.+++|+|+ +..|++|++++ | 
T Consensus        99 ~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-  176 (902)
T 2oaj_A           99 GKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-  176 (902)
T ss_dssp             SCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred             CCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence            8899999999 999999999999999999998876411            237789999999996 46888888555 8 


Q ss_pred             EEEcCCCccccCCeEEec------------------CCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785          216 IWRYNMREETSSPRIVLR------------------TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~------------------h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~  263 (730)
                      +||+++++...   .+..                  |...|.+++|+|+|++|++++.     +|+++.++
T Consensus       177 lWd~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          177 TYSLVENEIKQ---SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEETTTTEEEE---EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEECCCCceEE---EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            99999876543   2322                  3578999999999998877765     67766543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.79  E-value=1.6e-17  Score=177.87  Aligned_cols=181  Identities=8%  Similarity=0.023  Sum_probs=138.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~~--L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      +...++..|+++..+ .+++|+.....  +..+...+..++|.++++.+ ++++.|++|+|||+.+++.+..+. |...|
T Consensus        26 ~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v  103 (355)
T 3vu4_A           26 EFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPV  103 (355)
T ss_dssp             EECTTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCE
T ss_pred             EECCCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCce
Confidence            334567788887766 47899987653  22233358889999988877 567778999999999999998887 56689


Q ss_pred             EEEEEccCCC-----------------------------------CEEEE--EeCCCcEEEEECCCCe------------
Q 004785          153 WVVRFHPLNP-----------------------------------TIIAS--GSLDHEVRLWNASTAE------------  183 (730)
Q Consensus       153 ~sVafSP~dg-----------------------------------~lLaS--gS~DgtVrLWDl~tg~------------  183 (730)
                      .+++|++ +.                                   .+++.  ++.||+|++||+.+++            
T Consensus       104 ~~v~~~~-~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~  182 (355)
T 3vu4_A          104 KDLFLSR-EFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQK  182 (355)
T ss_dssp             EEEEECS-SEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC--------------
T ss_pred             EEEEEcC-CEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcccccccccccc
Confidence            9999887 31                                   23333  5788999999998765            


Q ss_pred             -----EEEEecCCCCeEEEEEcCCCCEEEEEE-CCe-EEEEEcCCCccccCCeEEe-c-CCCCeEEEEEccCCCeEEEEE
Q 004785          184 -----CIGSRDFYRPIASIAFHASGELLAVAS-GHK-LYIWRYNMREETSSPRIVL-R-TRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       184 -----~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~-I~VWDl~t~~~~~~~~~l~-~-h~~~V~sVaFSPdG~~Llatg  254 (730)
                           ......|...|.+++|+|+|++|++++ |+. |+|||+++++...   .+. + |...|.+++|+|+|++|++++
T Consensus       183 ~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~---~~~~g~h~~~v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          183 AILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR---EFRRGLDRADVVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             ----CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE---EEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred             ccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence                 223346899999999999999999999 565 9999999887644   444 4 899999999999999888766


Q ss_pred             e-----eCCccCC
Q 004785          255 E-----VNDLDSS  262 (730)
Q Consensus       255 s-----vwdl~s~  262 (730)
                      .     +|++...
T Consensus       260 ~d~~v~iw~~~~~  272 (355)
T 3vu4_A          260 DKWTLHVFEIFND  272 (355)
T ss_dssp             TTCEEEEEESSCC
T ss_pred             CCCEEEEEEccCC
Confidence            4     7777643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.79  E-value=2.1e-18  Score=197.25  Aligned_cols=163  Identities=16%  Similarity=0.164  Sum_probs=124.0

Q ss_pred             EEEeCCCeEEEEeCCCC----CCC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCC-----CcEE
Q 004785           85 ASWVEAESLHHLRPKYC----PLS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRR-----TPWV  154 (730)
Q Consensus        85 ~Sgs~DgsIrlWd~~t~----~L~-gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~-----~V~s  154 (730)
                      +..+.||.++.|+..+.    .+. .|...|.+++|||||++||+++.||.|+|||.++  ++..+. |..     .|.+
T Consensus        58 V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s  134 (588)
T 2j04_A           58 VKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC  134 (588)
T ss_dssp             EEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred             EEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence            34444555555555543    222 6688899999999999999999999999999644  667777 765     4999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeE-------EEEe-----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAEC-------IGSR-----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMR  222 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~-------i~~l-----~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~  222 (730)
                      ++||| ++++|++|+.||+|+|||+.++..       +..+     +|...|.+++|+||| +++++.|+.|++||+..+
T Consensus       135 vafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~  212 (588)
T 2j04_A          135 FEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSAS  212 (588)
T ss_dssp             EEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSS
T ss_pred             EEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCC
Confidence            99999 999999999999999999998752       3443     366799999999999 444444666999999877


Q ss_pred             ccccCCeEE-ecCCCCeEEEEEccCCCeEEEEE
Q 004785          223 EETSSPRIV-LRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       223 ~~~~~~~~l-~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ........+ ..|...|.+++|+  |..+++++
T Consensus       213 ~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~  243 (588)
T 2j04_A          213 SHQPVSRMIQNASRRKITDLKIV--DYKVVLTC  243 (588)
T ss_dssp             SSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred             ccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence            632111234 3688899999999  56666654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.79  E-value=6.7e-19  Score=191.17  Aligned_cols=173  Identities=14%  Similarity=0.096  Sum_probs=125.6

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEECCCCeEEEE----------
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDG-KTLASTHGDHTVKIIDCQTGSCLKV----------  144 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG-~~LaSgS~DgtVrVWDl~tg~~l~~----------  144 (730)
                      ++..|++++.|++|++||+.++    .+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....          
T Consensus       155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~  234 (393)
T 4gq1_A          155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP  234 (393)
T ss_dssp             EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred             CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence            5679999999999999998765    366889999999999987 4899999999999999988754322          


Q ss_pred             ---------------EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCe--------------
Q 004785          145 ---------------LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPI--------------  194 (730)
Q Consensus       145 ---------------l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V--------------  194 (730)
                                     ..+|...|.++.|++.++..+++++.|+++++||+.+++....+. +...+              
T Consensus       235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  314 (393)
T 4gq1_A          235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL  314 (393)
T ss_dssp             CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred             eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence                           246788899999984489999999999999999998876544331 22222              


Q ss_pred             ----EEEEEcC--CCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          195 ----ASIAFHA--SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       195 ----~sVafSP--dG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                          ....|+|  ++.++++|+ |+.|+|||+.+++...   ....|...|++++|+|||++|+++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~---~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS---IPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE---EEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE---EecCCCCcEEEEEEcCCCCEEEEEeC
Confidence                2233444  333556666 4559999999887533   66788899999999999998876653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.79  E-value=3e-18  Score=185.52  Aligned_cols=171  Identities=14%  Similarity=0.076  Sum_probs=129.1

Q ss_pred             cCCCEEEEEe--CCCeEEEEeCCC-CC----CCCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           79 DARRGLASWV--EAESLHHLRPKY-CP----LSPPPRSTIAAAFSP---DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        79 d~g~~L~Sgs--~DgsIrlWd~~t-~~----L~gH~~~Vt~lafSP---DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ..++.+.+..  .|+.|++|++.. ++    +.+|...++.++|++   ++.+|++++.|++|+|||+++|++++.|.+|
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~  222 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID  222 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence            3444444433  599999999843 43    457888899999999   7799999999999999999999999999875


Q ss_pred             C---CCcEEEEEccCCCCEE------------EEEeCCCcEEEEECCCCeEEEEe------cCCCCeEEEEEcCCCCEEE
Q 004785          149 R---RTPWVVRFHPLNPTII------------ASGSLDHEVRLWNASTAECIGSR------DFYRPIASIAFHASGELLA  207 (730)
Q Consensus       149 ~---~~V~sVafSP~dg~lL------------aSgS~DgtVrLWDl~tg~~i~~l------~h~~~V~sVafSPdG~~LA  207 (730)
                      .   ..+.+++|+| ++.++            ++|+.|++|++||..+++.+..+      +|...+.+..+  ++.+++
T Consensus       223 ~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lA  299 (356)
T 2w18_A          223 DSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAA  299 (356)
T ss_dssp             C---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEE
T ss_pred             CcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEE
Confidence            4   3677889999 77765            67889999999999999987664      34444444444  488999


Q ss_pred             EEE-CCeEEEEEcCCCccccCCeEEecCCCCeE-EEEEccCCCeEEEEEe
Q 004785          208 VAS-GHKLYIWRYNMREETSSPRIVLRTRRSLR-AVHFHPHAAPLLLTAE  255 (730)
Q Consensus       208 sgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~-sVaFSPdG~~Llatgs  255 (730)
                      +++ |++|+|||+.+++...   .+.+|...+. .++|+|||++|++++.
T Consensus       300 SgS~DgTIkIWDl~tGk~l~---tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          300 AILTSGTIAIWDLLLGQCTA---LLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             EEETTSCEEEEETTTCSEEE---EECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             EEcCCCcEEEEECCCCcEEE---EecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            998 5559999999998654   5667776655 6899999998776653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.77  E-value=6.1e-17  Score=174.80  Aligned_cols=226  Identities=8%  Similarity=0.053  Sum_probs=169.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ..++..+++++.|+.|++||.+++    .+..|...+.+++|+|++++|+++ +.|+.|++||+.+++.+..+..+. .+
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~  256 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LP  256 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EE
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-Cc
Confidence            456778889999999999999876    355788899999999999988555 479999999999999888887654 59


Q ss_pred             EEEEEccCCCCEEEEEe--------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEE-E-CCeEEEEEcCCC
Q 004785          153 WVVRFHPLNPTIIASGS--------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVA-S-GHKLYIWRYNMR  222 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS--------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsg-S-dd~I~VWDl~t~  222 (730)
                      .+++|+| +++++++++        .|+.|++||+.+++.+..+.+...+..++|+|+|+.|++. + ++.|++||+.++
T Consensus       257 ~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          257 RGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             EEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             eEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence            9999999 888888877        5889999999999988888777889999999999866555 4 456999999987


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCC
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLI  302 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~  302 (730)
                      +...    ...+...+.+++|+|+|++++++....+.....  .   ...|.   ....+.+|+..+.+.......    
T Consensus       336 ~~~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~--~---~~~g~---~dg~v~~~d~~~~~~~~~~~~----  399 (433)
T 3bws_A          336 KVQK----SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEG--Y---LKKGL---VLGKVYVIDTTTDTVKEFWEA----  399 (433)
T ss_dssp             EEEE----EEECSSSEEEEEECTTSSEEEEEECCCCCTTTC--T---TSCCS---SCCEEEEEETTTTEEEEEEEC----
T ss_pred             cEEE----EecCCCCCCeEEEcCCCCEEEEEecCCCccccc--c---ccccc---cceEEEEEECCCCcEEEEecC----
Confidence            6533    345778899999999999887776432211000  0   00111   123677777655443333222    


Q ss_pred             CCCceeeeEecCCCEEEEE
Q 004785          303 TPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       303 slpil~p~FSpDg~rI~~~  321 (730)
                      ......+.|+||++.|++.
T Consensus       400 ~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          400 GNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             SSSEEEEEECTTSCEEEEE
T ss_pred             CCCCceEEEcCCCCEEEEE
Confidence            2234578999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.77  E-value=5.7e-17  Score=177.18  Aligned_cols=164  Identities=19%  Similarity=0.314  Sum_probs=142.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCc
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL---KVLHGHRRTP  152 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l---~~l~gH~~~V  152 (730)
                      .+..|++++.|++|++||..++    .+.+|...|.+++|+  +.+|++|+.|+.|++||+.+++.+   ..+.+|...|
T Consensus       182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            6789999999999999999876    467899999999997  469999999999999999987655   6788999999


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeE
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRI  230 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~  230 (730)
                      .+++|   +++++++++.|++|++||+++++.+..+. |...|.++.|  ++++|++|+.+ .|++||+++++...   .
T Consensus       260 ~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~---~  331 (435)
T 1p22_A          260 NVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---V  331 (435)
T ss_dssp             EEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE---E
T ss_pred             EEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEE---E
Confidence            99999   46899999999999999999999888765 8889999999  47899999854 59999999887644   6


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +..|...|.+++|  ++.++++++.
T Consensus       332 ~~~h~~~v~~~~~--~~~~l~sg~~  354 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNKRIVSGAY  354 (435)
T ss_dssp             ECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             EeCCcCcEEEEEe--cCCEEEEEeC
Confidence            7789999999999  6777776654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.76  E-value=1.7e-17  Score=177.70  Aligned_cols=169  Identities=11%  Similarity=0.080  Sum_probs=126.4

Q ss_pred             EEEeCCCeEEEEeCCCCCC---CCCCCCeEEEEECCCC-----------------------------------CEEEE--
Q 004785           85 ASWVEAESLHHLRPKYCPL---SPPPRSTIAAAFSPDG-----------------------------------KTLAS--  124 (730)
Q Consensus        85 ~Sgs~DgsIrlWd~~t~~L---~gH~~~Vt~lafSPDG-----------------------------------~~LaS--  124 (730)
                      ++++.|++|++||..+++.   ..|...|.++.|+++.                                   .+|++  
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s  154 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN  154 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred             EEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence            4566667778887766521   1245567777776542                                   34444  


Q ss_pred             EeCCCeEEEEECCCCe----------------EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-EEEEECCCCeEEEE
Q 004785          125 THGDHTVKIIDCQTGS----------------CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-VRLWNASTAECIGS  187 (730)
Q Consensus       125 gS~DgtVrVWDl~tg~----------------~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~i~~  187 (730)
                      |+.|+.|++||+.+++                ++..+.+|.+.|++++|+| ++++|++++.|++ |++||+++++++..
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~  233 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVRE  233 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            4678999999998765                2678899999999999999 9999999999999 99999999999988


Q ss_pred             ec---CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEE---------------------ecCCCCeEEEE
Q 004785          188 RD---FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV---------------------LRTRRSLRAVH  242 (730)
Q Consensus       188 l~---h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l---------------------~~h~~~V~sVa  242 (730)
                      +.   |...|.+++|+|+|++|++++.+ .|+|||++...... ...+                     .........++
T Consensus       234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  312 (355)
T 3vu4_A          234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK-RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA  312 (355)
T ss_dssp             EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC-SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred             EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc-cccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence            75   88999999999999999999965 59999997654211 0000                     00122336789


Q ss_pred             EccCCCeEEEEEe
Q 004785          243 FHPHAAPLLLTAE  255 (730)
Q Consensus       243 FSPdG~~Llatgs  255 (730)
                      |++||+++++.+.
T Consensus       313 ~~~d~~~l~~~~~  325 (355)
T 3vu4_A          313 WISESSLVVVWPH  325 (355)
T ss_dssp             ESSSSEEEEEETT
T ss_pred             EeCCCCEEEEEeC
Confidence            9999997776653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.75  E-value=3.8e-17  Score=179.43  Aligned_cols=222  Identities=13%  Similarity=0.116  Sum_probs=161.9

Q ss_pred             CCC----eEEEEeC--CCCC------CCCCCCCeEEEEECC--------------CCCEEEEEeCC------CeEEEEEC
Q 004785           89 EAE----SLHHLRP--KYCP------LSPPPRSTIAAAFSP--------------DGKTLASTHGD------HTVKIIDC  136 (730)
Q Consensus        89 ~Dg----sIrlWd~--~t~~------L~gH~~~Vt~lafSP--------------DG~~LaSgS~D------gtVrVWDl  136 (730)
                      .+|    +|++||+  .+++      +.+|...+..+++++              .+..|+.++.+      +.|++||+
T Consensus        87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~  166 (415)
T 2hqs_A           87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY  166 (415)
T ss_dssp             TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET
T ss_pred             CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC
Confidence            567    8999999  7653      557777777777664              26677776664      79999999


Q ss_pred             CCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC---cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEE-EE-C
Q 004785          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH---EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV-AS-G  211 (730)
Q Consensus       137 ~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg---tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAs-gS-d  211 (730)
                      . +...+.+.+|...|.+++|+| +++.|++++.|+   .|++||+.+++......+...+.+++|+|||++|+. ++ +
T Consensus       167 ~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~  244 (415)
T 2hqs_A          167 D-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT  244 (415)
T ss_dssp             T-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             C-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecC
Confidence            7 455678888999999999999 899999998875   999999999998877778889999999999998884 44 2


Q ss_pred             C--eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCC
Q 004785          212 H--KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHS  289 (730)
Q Consensus       212 d--~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s  289 (730)
                      +  .|++||+.+++.    ..+..|...+.+++|+|||++|++++....               .     ..+.+++...
T Consensus       245 g~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~spdg~~l~~~s~~~g---------------~-----~~i~~~d~~~  300 (415)
T 2hqs_A          245 GSLNLYVMDLASGQI----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAG---------------R-----PQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEETTTCCE----EECCCCSSCEEEEEECTTSSEEEEEECTTS---------------S-----CEEEEEETTS
T ss_pred             CCceEEEEECCCCCE----EeCcCCCCcccceEECCCCCEEEEEECCCC---------------C-----cEEEEEECCC
Confidence            2  299999988754    246677888999999999998887763210               0     2455555444


Q ss_pred             CCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcc
Q 004785          290 SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSS  341 (730)
Q Consensus       290 ~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~  341 (730)
                      +....+..    .......+.|+|||++|++...+. ....++.+++.+...
T Consensus       301 ~~~~~l~~----~~~~~~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          301 GAPQRITW----EGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGV  347 (415)
T ss_dssp             SCCEECCC----SSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCE
T ss_pred             CCEEEEec----CCCcccCeEECCCCCEEEEEECcC-CceEEEEEECCCCCE
Confidence            33221111    112344799999999999865432 234566666665443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.74  E-value=4.7e-17  Score=176.18  Aligned_cols=139  Identities=11%  Similarity=0.117  Sum_probs=111.2

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC----CCCC---CCCeEEEEECCCCCEE------------EEEeCCCeEEEEECCC
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCP----LSPP---PRSTIAAAFSPDGKTL------------ASTHGDHTVKIIDCQT  138 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH---~~~Vt~lafSPDG~~L------------aSgS~DgtVrVWDl~t  138 (730)
                      .+.+..|++++.|++|++||+++++    +.+|   ...+.+++|+|||+++            ++|+.|++|++||..+
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence            4567899999999999999999884    4444   3468888999999986            5678899999999999


Q ss_pred             CeEEEEE-----ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeE-EEEEcCCCCEEEEEEC
Q 004785          139 GSCLKVL-----HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIA-SIAFHASGELLAVASG  211 (730)
Q Consensus       139 g~~l~~l-----~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~-sVafSPdG~~LAsgSd  211 (730)
                      ++.+..+     .+|...+.+..+   ++.++++++.|++|+|||+.+++++..+. |...+. +++|+|||++|++|+.
T Consensus       270 gk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~  346 (356)
T 2w18_A          270 TLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK  346 (356)
T ss_dssp             TEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred             CEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence            9988766     377766544444   46899999999999999999999999985 665554 6899999999999995


Q ss_pred             Ce-EEEEEc
Q 004785          212 HK-LYIWRY  219 (730)
Q Consensus       212 d~-I~VWDl  219 (730)
                      |+ |+|||+
T Consensus       347 D~TIklWd~  355 (356)
T 2w18_A          347 DGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEEE
T ss_pred             CCcEEEecC
Confidence            55 999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.73  E-value=2.6e-16  Score=167.50  Aligned_cols=189  Identities=17%  Similarity=0.213  Sum_probs=148.0

Q ss_pred             EEEecCCCEE-EEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCC
Q 004785           75 EAGRDARRGL-ASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        75 ~a~~d~g~~L-~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      ++....+..| +++..++.|++||..+++   ...+...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|.
T Consensus        79 ~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  158 (391)
T 1l0q_A           79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR  158 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred             eEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence            3344456656 456677999999998763   22345578999999999987 677889999999999999998888764


Q ss_pred             CCcEEEEEccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE----CCeEEEEEcCCCcc
Q 004785          150 RTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS----GHKLYIWRYNMREE  224 (730)
Q Consensus       150 ~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS----dd~I~VWDl~t~~~  224 (730)
                       .+..++|+| +++.+ ++++.|+.|++||+++++.+..+.+...+.+++|+|+|++|++++    ++.|++||+.+++.
T Consensus       159 -~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          159 -SPKGIAVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             -SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             -CcceEEECC-CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence             479999999 66555 778889999999999999998888888999999999999988887    34599999988765


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCcceeEe
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLA  269 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~~~~l~  269 (730)
                      ..   .+.. ...+.+++|+|+|+++++++.      +|++..++....+.
T Consensus       237 ~~---~~~~-~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          237 TA---RIPV-GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             EE---EEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EE---EEec-CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            33   3333 446899999999998866643      66666554444443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=5.8e-16  Score=155.46  Aligned_cols=164  Identities=12%  Similarity=0.064  Sum_probs=125.1

Q ss_pred             EeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEEEecCC-CCcEEEEEccCC
Q 004785           87 WVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHR-RTPWVVRFHPLN  161 (730)
Q Consensus        87 gs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g~~l~~l~gH~-~~V~sVafSP~d  161 (730)
                      ...+++|++||..++   .+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..|. ..+.+++|+| +
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-d   95 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-D   95 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-T
T ss_pred             CCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-C
Confidence            456889999999876   3567889999999999999999986 78999999999 88777666663 6788999999 8


Q ss_pred             CCEEEEEe--CCCc--EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEE-EEE-CCeEEEEEcCCCccccCCeEEecCC
Q 004785          162 PTIIASGS--LDHE--VRLWNASTAECIGSRDFYRPIASIAFHASGELLA-VAS-GHKLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       162 g~lLaSgS--~Dgt--VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LA-sgS-dd~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                      ++++++++  .++.  |.+||+.+++. ..+.....+..++|+|||++|+ +++ ++.++||+++....  ....+..+.
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~  172 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--VETRLTHGE  172 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC--CEEECCCSS
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC--cceEcccCC
Confidence            88898888  3344  45555555553 3444445589999999999887 444 56688888754322  123455677


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004785          236 RSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+.++.|+|+|+++++++.
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEEC
T ss_pred             CccccceECCCCCEEEEEec
Confidence            88999999999998877664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.71  E-value=1.2e-16  Score=177.42  Aligned_cols=176  Identities=15%  Similarity=0.111  Sum_probs=135.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC-----------C--------CCCCCCCeEEEEECCCCCEEE----EEeCCCeE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC-----------P--------LSPPPRSTIAAAFSPDGKTLA----STHGDHTV  131 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~-----------~--------L~gH~~~Vt~lafSPDG~~La----SgS~DgtV  131 (730)
                      .+....+..++.+..++ +++|+....           .        ...|...|++++|+|+|++|+    +++.|++|
T Consensus        42 lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v  120 (434)
T 2oit_A           42 LAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSII  120 (434)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred             EEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceE
Confidence            34445677788888777 888764210           0        113456799999999999999    78889999


Q ss_pred             EEEECCCC--------e---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEE
Q 004785          132 KIIDCQTG--------S---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAF  199 (730)
Q Consensus       132 rVWDl~tg--------~---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVaf  199 (730)
                      +|||+.++        +   .+..+.+|...|.+++|+|+++++|++++.|++|++||++++..+.. ..|...|.+++|
T Consensus       121 ~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~w  200 (434)
T 2oit_A          121 AFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCW  200 (434)
T ss_dssp             EEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEE
T ss_pred             EEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEE
Confidence            99998664        2   24566789999999999995589999999999999999999866543 457889999999


Q ss_pred             cCCCCEEEEEECC-eEEEEEcCCCccccCCeEEec-------CCCCeEEEEEccCCCeEEEEEe
Q 004785          200 HASGELLAVASGH-KLYIWRYNMREETSSPRIVLR-------TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       200 SPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~-------h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +|+|++|++|+.+ .|++||++ ++...   .+..       |...|.++.|++++.++++...
T Consensus       201 spdg~~lasgs~dg~v~iwd~~-~~~~~---~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~  260 (434)
T 2oit_A          201 SPKGKQLAVGKQNGTVVQYLPT-LQEKK---VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA  260 (434)
T ss_dssp             CTTSSCEEEEETTSCEEEECTT-CCEEE---EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred             cCCCCEEEEEcCCCcEEEEccC-Ccccc---cccCCcccCCCCceeEEEEEEecCceEEEEEcc
Confidence            9999999999955 59999998 33211   1222       2337999999999887665543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.70  E-value=3.8e-15  Score=154.80  Aligned_cols=174  Identities=9%  Similarity=0.074  Sum_probs=134.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCeE-EEEEecCCCCc
Q 004785           79 DARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSC-LKVLHGHRRTP  152 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg~~-l~~l~gH~~~V  152 (730)
                      +.+..+++...++.|.+||..++++    ..+...+ +++|+|||++|++++. ++.|++||+.+++. ...+..+....
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence            3455677888899999999987742    3445556 9999999997777766 88999999999987 77777777766


Q ss_pred             EEEEEccCCCCEEEEEeCCC---cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCe-EEEEEcCCCcccc
Q 004785          153 WVVRFHPLNPTIIASGSLDH---EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK-LYIWRYNMREETS  226 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~Dg---tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~-I~VWDl~t~~~~~  226 (730)
                      .+++|+| ++++++++..++   .|++||+.+++.+..+.......+++|+|||++|++++  ++. |++|++.......
T Consensus        87 ~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A           87 ADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             CCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence            6699999 888887554442   89999999999988888777889999999998666654  367 9999998654321


Q ss_pred             CC-eEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          227 SP-RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       227 ~~-~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .. .........+..++|+|||++++++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          166 DTGQEFISGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             EEEEEEECSSSSEEEEEECTTSSEEEEEE
T ss_pred             ecCCccccCCCCccceEECCCCCEEEEEe
Confidence            11 12334456789999999999777665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.69  E-value=5.6e-15  Score=148.22  Aligned_cols=231  Identities=11%  Similarity=0.054  Sum_probs=155.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCC-CC----CCCC-CCCeEEEEECCCCCEEEEEeC--C--CeEEEEECCCCeEEEEEe
Q 004785           77 GRDARRGLASWVEAESLHHLRPKY-CP----LSPP-PRSTIAAAFSPDGKTLASTHG--D--HTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t-~~----L~gH-~~~Vt~lafSPDG~~LaSgS~--D--gtVrVWDl~tg~~l~~l~  146 (730)
                      ...++..|+++. ++.|.+||..+ +.    +..| ...+.+++|+|||++|++++.  +  ..|.+|+..+++ ...+.
T Consensus        49 ~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~  126 (297)
T 2ojh_A           49 WSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT  126 (297)
T ss_dssp             ECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC
T ss_pred             ECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee
Confidence            345667777765 78999999988 63    3344 467899999999999999983  3  345555555555 44555


Q ss_pred             cCCCCcEEEEEccCCCCEEE-EEeCCCcEEEEEC--CCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785          147 GHRRTPWVVRFHPLNPTIIA-SGSLDHEVRLWNA--STAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLa-SgS~DgtVrLWDl--~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t  221 (730)
                      .+. .+..++|+| +++.++ +++.|+.++||++  .+++......+...+.+++|+|+|++|++++  ++.++||+++.
T Consensus       127 ~~~-~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~  204 (297)
T 2ojh_A          127 KNL-PSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV  204 (297)
T ss_dssp             SSS-SEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCC-CccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence            444 488999999 666555 7889999999985  4566655566778999999999999888776  34588888863


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~  301 (730)
                      ...  ....+..+...+..+.|+|+|++|++++.........            .+....+.+++...+....+... ..
T Consensus       205 ~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~------------~~~~~~l~~~d~~~~~~~~~~~~-~~  269 (297)
T 2ojh_A          205 DGS--SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP------------RDLDVRVQLMDMDGGNVETLFDL-FG  269 (297)
T ss_dssp             TSS--CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC------------SSEEEEEEEEETTSCSCEEEEEE-EE
T ss_pred             CCC--CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc------------ccCceEEEEEecCCCCceeeecc-CC
Confidence            322  1234556677889999999999888776543211000            00112466666555443322221 11


Q ss_pred             CCCCceeeeEecCCCEEEEEecCCC
Q 004785          302 ITPPFLRPSFVRDDERISLQHTEHD  326 (730)
Q Consensus       302 ~slpil~p~FSpDg~rI~~~~~~~d  326 (730)
                      ....+..+.|+||+++|++...+..
T Consensus       270 ~~~~~~~~~~spdg~~l~~~~~~~~  294 (297)
T 2ojh_A          270 GQGTMNSPNWSPDGDEFAYVRYFPV  294 (297)
T ss_dssp             STTTSCSCCBCTTSSEEEEEEECCC
T ss_pred             CCcccccceECCCCCEEEEEEeccC
Confidence            2234556899999999998666554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.69  E-value=1.7e-16  Score=183.67  Aligned_cols=216  Identities=9%  Similarity=-0.002  Sum_probs=147.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCC---CeEEEEECCCCCEEEEEeCC---------CeEEEEECCCCeEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPR---STIAAAFSPDGKTLASTHGD---------HTVKIIDCQTGSCLK  143 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~---~Vt~lafSPDG~~LaSgS~D---------gtVrVWDl~tg~~l~  143 (730)
                      ++..+++ +.|++|++||..+++    +.+|..   .|.+++|||||++|++++.+         +.|++||+.+++. .
T Consensus        27 dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~  104 (723)
T 1xfd_A           27 DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-Q  104 (723)
T ss_dssp             SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-E
T ss_pred             CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-E
Confidence            3344444 678899999998763    344544   49999999999999999874         7888999999875 3


Q ss_pred             EEe---cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-CCC------------------eEEEEEcC
Q 004785          144 VLH---GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRP------------------IASIAFHA  201 (730)
Q Consensus       144 ~l~---gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~~~------------------V~sVafSP  201 (730)
                      .+.   +|...+..++|+| +++.|++++. +.|++||+.+++....... ...                  +.+++|+|
T Consensus       105 ~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp  182 (723)
T 1xfd_A          105 SLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP  182 (723)
T ss_dssp             ECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred             eccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC
Confidence            443   3445588999999 8888888776 7899999999887766542 222                  37899999


Q ss_pred             CCCEEEEEECC-----------------------------------eEEEEEcCCCccccCCeEEec------CCCCeEE
Q 004785          202 SGELLAVASGH-----------------------------------KLYIWRYNMREETSSPRIVLR------TRRSLRA  240 (730)
Q Consensus       202 dG~~LAsgSdd-----------------------------------~I~VWDl~t~~~~~~~~~l~~------h~~~V~s  240 (730)
                      ||++|++++.+                                   .|++||+.+++...   .+..      +...+..
T Consensus       183 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~---~l~~~~~~~~~~~~~~~  259 (723)
T 1xfd_A          183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL---EMMPPDDPRMREYYITM  259 (723)
T ss_dssp             TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE---ECCCCCCGGGSSEEEEE
T ss_pred             CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE---EeeCCccCCCccceeEE
Confidence            99999988721                                   58999998776321   2222      2567899


Q ss_pred             EEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCC--ceeeeEecCCCEE
Q 004785          241 VHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPP--FLRPSFVRDDERI  318 (730)
Q Consensus       241 VaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slp--il~p~FSpDg~rI  318 (730)
                      ++|+|||+++++......-                   ...+.+++..++....+..........  ...+.|||||++|
T Consensus       260 ~~~SpDg~~l~~~~~~~~~-------------------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l  320 (723)
T 1xfd_A          260 VKWATSTKVAVTWLNRAQN-------------------VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF  320 (723)
T ss_dssp             EEESSSSEEEEEEEETTSC-------------------EEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred             EEEeCCCeEEEEEEcCCCC-------------------eEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeE
Confidence            9999999976555431100                   013444444443332222111111111  1257999999999


Q ss_pred             EEE
Q 004785          319 SLQ  321 (730)
Q Consensus       319 ~~~  321 (730)
                      ++.
T Consensus       321 ~~~  323 (723)
T 1xfd_A          321 FFI  323 (723)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.67  E-value=3e-15  Score=174.01  Aligned_cols=237  Identities=11%  Similarity=0.033  Sum_probs=159.9

Q ss_pred             EEecCCCEEEEEeC-CC-----eEEEEeCCCCC----CCCCC------------------------CCeEEEEECCCCCE
Q 004785           76 AGRDARRGLASWVE-AE-----SLHHLRPKYCP----LSPPP------------------------RSTIAAAFSPDGKT  121 (730)
Q Consensus        76 a~~d~g~~L~Sgs~-Dg-----sIrlWd~~t~~----L~gH~------------------------~~Vt~lafSPDG~~  121 (730)
                      +.+.+++.|++++. |+     .|++||..+++    +..+.                        ..|.+++|||||++
T Consensus        43 ~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~  122 (741)
T 2ecf_A           43 KVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQR  122 (741)
T ss_dssp             EECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSE
T ss_pred             eEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCE
Confidence            33457788888887 87     89999998763    22222                        23789999999999


Q ss_pred             EEEEeCCCeEEEEECCCCe--EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCC------
Q 004785          122 LASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRP------  193 (730)
Q Consensus       122 LaSgS~DgtVrVWDl~tg~--~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~------  193 (730)
                      |++++. +.|++||+.++.  .+..+..|...+..++|+| ++++|++++ ++.|++||+.+++..........      
T Consensus       123 l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~  199 (741)
T 2ecf_A          123 LLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGI  199 (741)
T ss_dssp             EEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESC
T ss_pred             EEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccc
Confidence            999987 899999999883  4556777888899999999 889888887 45899999999887765443221      


Q ss_pred             -----------eEEEEEcCCCCEEEEEE-CC---------------------------------eEEEEEcCC-CccccC
Q 004785          194 -----------IASIAFHASGELLAVAS-GH---------------------------------KLYIWRYNM-REETSS  227 (730)
Q Consensus       194 -----------V~sVafSPdG~~LAsgS-dd---------------------------------~I~VWDl~t-~~~~~~  227 (730)
                                 +.+++|+|||++|++++ ++                                 .|++||+.+ ++... 
T Consensus       200 ~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-  278 (741)
T 2ecf_A          200 AEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW-  278 (741)
T ss_dssp             CCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE-
T ss_pred             cceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE-
Confidence                       47899999999988886 32                                 588899887 65422 


Q ss_pred             CeEEe--cCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCC-
Q 004785          228 PRIVL--RTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITP-  304 (730)
Q Consensus       228 ~~~l~--~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~sl-  304 (730)
                        ...  .|...+..++| |||++|+++.....-.                  ...+.+++..++....+......... 
T Consensus       279 --~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~------------------~~~i~~~d~~~g~~~~~~~~~~~~~~~  337 (741)
T 2ecf_A          279 --IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK------------------KLDLVEVTLASNQQRVLAHETSPTWVP  337 (741)
T ss_dssp             --ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS------------------EEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             --ecCCCCcceEEEEEEe-CCCCEEEEEEecccCC------------------eEEEEEEECCCCceEEEEEcCCCCcCC
Confidence              111  46678999999 9999888765421100                  01344444444333222222111111 


Q ss_pred             CceeeeEecCCCEEEEEecCCCCCcccceeecCCC
Q 004785          305 PFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSS  339 (730)
Q Consensus       305 pil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss  339 (730)
                      ....+.|+|||+.++..  +.+....++..+.++.
T Consensus       338 ~~~~~~~spdg~~~~~~--~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          338 LHNSLRFLDDGSILWSS--ERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             CCSCCEECTTSCEEEEE--CTTSSCEEEEECSSSC
T ss_pred             cCCceEECCCCeEEEEe--cCCCccEEEEEcCCCC
Confidence            22367899999944432  2233345555554433

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.66  E-value=1.5e-14  Score=165.27  Aligned_cols=237  Identities=12%  Similarity=0.055  Sum_probs=167.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CC-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC--CCCeEEEEEecCCCCc
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LS-PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC--QTGSCLKVLHGHRRTP  152 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~-gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl--~tg~~l~~l~gH~~~V  152 (730)
                      .+..+++...|++|.+||..+++    +. ++.  +..++|+|||++|++++.|++|++||+  .+++.+..+.. ...+
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p  224 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEA  224 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEE
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCc
Confidence            45678888899999999998874    33 333  899999999999999999999999999  89999888884 4568


Q ss_pred             EEEEEccC---CCCEEEEEe-CCCcEEEEECCCCeEEEEecC------------CCCeEEEEEcCCCCEEEEEE--CCeE
Q 004785          153 WVVRFHPL---NPTIIASGS-LDHEVRLWNASTAECIGSRDF------------YRPIASIAFHASGELLAVAS--GHKL  214 (730)
Q Consensus       153 ~sVafSP~---dg~lLaSgS-~DgtVrLWDl~tg~~i~~l~h------------~~~V~sVafSPdG~~LAsgS--dd~I  214 (730)
                      ..++|+|.   +++++++++ .+++|.+||..+++++..+..            ...+.++.|+|++..+++..  ++.|
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i  304 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  304 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeE
Confidence            99999981   345555555 689999999999998887642            22789999999988766665  4559


Q ss_pred             EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCcceeEec----cCCcc-c-------
Q 004785          215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLAT----SPGYW-R-------  276 (730)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~~~~l~t----~sG~~-~-------  276 (730)
                      .+||+.+.+...  .....+...+..+.|+|||+++++++.      +||...++....+..    +.+.. .       
T Consensus       305 ~vvd~~~~~~l~--~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g  382 (543)
T 1nir_A          305 LLVNYKDIDNLT--VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  382 (543)
T ss_dssp             EEEECTTSSSCE--EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTE
T ss_pred             EEEEecCCCcce--eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCc
Confidence            999998765422  123456677899999999998877653      777776655544443    21110 0       


Q ss_pred             --C-----CCCeEEEecCCCCCC----CCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          277 --Y-----PPPVICMAGAHSSSH----PGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       277 --~-----p~~~V~l~d~~s~d~----~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                        +     ....|.+++..+...    ..............+.+.|+||+++|++.
T Consensus       383 ~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          383 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence              0     113455665544211    11111111222344568899999999983

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.65  E-value=2.1e-14  Score=148.50  Aligned_cols=175  Identities=13%  Similarity=0.075  Sum_probs=127.8

Q ss_pred             EEEEeCCCeEEEEeCC-CCC-----CCCCCCCeEEEEECCCCCEEEEEeCC-CeEEEEECC--CCe--EEEEEecCCCCc
Q 004785           84 LASWVEAESLHHLRPK-YCP-----LSPPPRSTIAAAFSPDGKTLASTHGD-HTVKIIDCQ--TGS--CLKVLHGHRRTP  152 (730)
Q Consensus        84 L~Sgs~DgsIrlWd~~-t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~D-gtVrVWDl~--tg~--~l~~l~gH~~~V  152 (730)
                      +++...++.|++|++. ++.     ...|...+.+++|+|+|++|++++.+ +.|++|++.  +++  .+..+..+. .+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~   86 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL   86 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence            3344678999999885 231     23567789999999999999998886 999999997  555  344555544 78


Q ss_pred             EEEEEccCCCCEEEEEe-CCCcEEEEECC---CCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC-Cccc
Q 004785          153 WVVRFHPLNPTIIASGS-LDHEVRLWNAS---TAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM-REET  225 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS-~DgtVrLWDl~---tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t-~~~~  225 (730)
                      ..++|+| +++++++++ .++.|++||+.   +.+.+..+.....+.+++|+|+|++|++++  ++.|++||+.+ ++..
T Consensus        87 ~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           87 THISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             SEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cEEEEcC-CCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            9999999 777665555 58899999994   444555566666789999999999888876  56699999987 4321


Q ss_pred             cCC--eEEecCCCCeEEEEEccCCCeEEEEEe------eCCcc
Q 004785          226 SSP--RIVLRTRRSLRAVHFHPHAAPLLLTAE------VNDLD  260 (730)
Q Consensus       226 ~~~--~~l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~  260 (730)
                      ...  .........+..++|+|+|+++++++.      +|+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            100  112223457889999999998877653      66664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=6.1e-14  Score=146.17  Aligned_cols=242  Identities=11%  Similarity=0.032  Sum_probs=164.3

Q ss_pred             EEEecCCCEEEEEeC-------CCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEE
Q 004785           75 EAGRDARRGLASWVE-------AESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLK  143 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~-------DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~  143 (730)
                      .+...+++.++....       ++.|.+||..++++.   .....+..++|+|||++++.+ ..++.|.+||..+++.+.
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  125 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKG  125 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEE
Confidence            344456666666653       568999999876421   223457789999999966555 457999999999999988


Q ss_pred             EEecCCCC---------cEEEEEccCCCCEEEEEe--CCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC
Q 004785          144 VLHGHRRT---------PWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       144 ~l~gH~~~---------V~sVafSP~dg~lLaSgS--~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd  211 (730)
                      .+..+...         +..++|+| ++++++.++  .++.|.+||+.+++.+..+. +...+..++|+|+|++|++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          126 RLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             EEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT
T ss_pred             EEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC
Confidence            88765433         68899999 666655554  58899999999999988887 5666889999999999998884


Q ss_pred             -CeEEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEEe------eCCccCCCcceeEeccCC-------
Q 004785          212 -HKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSESSLTLATSPG-------  273 (730)
Q Consensus       212 -d~I~VWDl~t~~~~~~~~~l~----~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~~~~l~t~sG-------  273 (730)
                       +.|.+||+.+++...   .+.    ++...+..++|+|+|++++++..      +|+...++....+.....       
T Consensus       205 ~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~  281 (353)
T 3vgz_A          205 DGELITIDTADNKILS---RKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNP  281 (353)
T ss_dssp             TSEEEEEETTTTEEEE---EEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEET
T ss_pred             CCeEEEEECCCCeEEE---EEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECC
Confidence             559999999887543   222    24556888999999998777653      556655544333332111       


Q ss_pred             --ccc----CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecC
Q 004785          274 --YWR----YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (730)
Q Consensus       274 --~~~----~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~  324 (730)
                        ..-    .....+.+++..+.........    ......++|++||+.|++...+
T Consensus       282 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT----PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTEEEEEEEC----CSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCEEEEEECCCCeEEEEECCCCeEEEEEec----CCCCCeEEEcCCCCEEEEEEcc
Confidence              100    0123445555443332221111    1123468999999998885554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.64  E-value=7.2e-14  Score=159.60  Aligned_cols=243  Identities=11%  Similarity=0.045  Sum_probs=173.4

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeC--CCCC----CCCCCCCeEEEEECC----CCCEEEEEeC-CCeEEEEECCCCeEE
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRP--KYCP----LSPPPRSTIAAAFSP----DGKTLASTHG-DHTVKIIDCQTGSCL  142 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~--~t~~----L~gH~~~Vt~lafSP----DG~~LaSgS~-DgtVrVWDl~tg~~l  142 (730)
                      .++...+++.|++++.|++|.+||+  .+.+    +. +...+..++|+|    ||++|++++. +++|.|||..+++++
T Consensus       183 ~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~  261 (543)
T 1nir_A          183 ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK  261 (543)
T ss_dssp             EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE
T ss_pred             eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc
Confidence            4445668889999999999999999  6652    33 445689999999    9999999985 899999999999999


Q ss_pred             EEEecC----------C-CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCCCCeEEEEEcCCCCEEEEE
Q 004785          143 KVLHGH----------R-RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAVA  209 (730)
Q Consensus       143 ~~l~gH----------~-~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~--~l~h~~~V~sVafSPdG~~LAsg  209 (730)
                      ..+..+          . ..+..+.++|++..++++...+++|.+||+.+.+.+.  .+.+...+..++|+|+|++|+++
T Consensus       262 ~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va  341 (543)
T 1nir_A          262 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA  341 (543)
T ss_dssp             EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE
T ss_pred             eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE
Confidence            888652          2 2688999999667778888899999999998876544  45666778899999999988777


Q ss_pred             E--CCeEEEEEcCCCccccCCeEEe----cCCCCeEEEEEccCCCeEEEEEe-------eCCccC-------CCcceeEe
Q 004785          210 S--GHKLYIWRYNMREETSSPRIVL----RTRRSLRAVHFHPHAAPLLLTAE-------VNDLDS-------SESSLTLA  269 (730)
Q Consensus       210 S--dd~I~VWDl~t~~~~~~~~~l~----~h~~~V~sVaFSPdG~~Llatgs-------vwdl~s-------~~~~~~l~  269 (730)
                      +  +++|.+||+.+++...   .+.    .|......+ ++|++..++++++       +|+++.       ++....+.
T Consensus       342 ~~~~~~v~v~D~~tg~l~~---~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~  417 (543)
T 1nir_A          342 ANNSNKVAVIDSKDRRLSA---LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  417 (543)
T ss_dssp             EGGGTEEEEEETTTTEEEE---EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             ecCCCeEEEEECCCCeEEE---eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence            6  4679999999987644   222    244333333 5788555555542       788776       55555555


Q ss_pred             ccCCc---ccCC------------------CCeEEEecCCCCCCC-Ccc-c----ccCCCCCCceeeeEecCCCEEEEE
Q 004785          270 TSPGY---WRYP------------------PPVICMAGAHSSSHP-GLA-E----EVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       270 t~sG~---~~~p------------------~~~V~l~d~~s~d~~-~L~-~----~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                      +..+.   +.+.                  ...|.+++..+.+.. ... .    +.....-..+.+.|++||+.+.+.
T Consensus       418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s  496 (543)
T 1nir_A          418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS  496 (543)
T ss_dssp             CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred             cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence            54322   1111                  126777777766654 221 0    012223456689999999999984

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=176.30  Aligned_cols=238  Identities=12%  Similarity=0.060  Sum_probs=154.4

Q ss_pred             EEEEEeCCCeEEEEeCCCCC---C-CCCCC---CeEEEEECCCCCEEEEEeC---------CCeEEEEECCCCeEE--EE
Q 004785           83 GLASWVEAESLHHLRPKYCP---L-SPPPR---STIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCL--KV  144 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~~---L-~gH~~---~Vt~lafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l--~~  144 (730)
                      .++....|++|++||..+++   + .+|..   .+.+++|||||++|++++.         |+.|++||+.+++.+  ..
T Consensus        28 ~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~  107 (719)
T 1z68_A           28 EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE  107 (719)
T ss_dssp             EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence            34444568999999998873   2 22322   4899999999999999877         789999999999862  22


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CCCCe-----------------EEEEEcCCCCE
Q 004785          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPI-----------------ASIAFHASGEL  205 (730)
Q Consensus       145 l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~--h~~~V-----------------~sVafSPdG~~  205 (730)
                      +   ...+..++|+| +++.|+++. |++|++||+.+++......  +...|                 .+++|+|||++
T Consensus       108 l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~  182 (719)
T 1z68_A          108 L---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF  182 (719)
T ss_dssp             C---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE
T ss_pred             c---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCE
Confidence            2   24688899999 888888875 7899999999887765432  22222                 48999999999


Q ss_pred             EEEEECC-----------------------------------eEEEEEcCCCccc---c--CCeEEecCCCCeEEEEEcc
Q 004785          206 LAVASGH-----------------------------------KLYIWRYNMREET---S--SPRIVLRTRRSLRAVHFHP  245 (730)
Q Consensus       206 LAsgSdd-----------------------------------~I~VWDl~t~~~~---~--~~~~l~~h~~~V~sVaFSP  245 (730)
                      |++++.+                                   .|++||+.+++..   .  .+..+..|...+..++|+|
T Consensus       183 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp  262 (719)
T 1z68_A          183 LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT  262 (719)
T ss_dssp             EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS
T ss_pred             EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC
Confidence            9988732                                   5889999887642   1  0011235777899999999


Q ss_pred             CCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEec----CCCCCCCCccc---ccCCCCCC---ceeeeEecCC
Q 004785          246 HAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAG----AHSSSHPGLAE---EVPLITPP---FLRPSFVRDD  315 (730)
Q Consensus       246 dG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d----~~s~d~~~L~~---~~~~~slp---il~p~FSpDg  315 (730)
                      |++.+++.....+-.                   ..+.+++    ..++....+..   ........   ...+.|+|||
T Consensus       263 D~~~~~~~~~~~~~~-------------------~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          263 DERVCLQWLKRVQNV-------------------SVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             SSEEEEEEEESSTTE-------------------EEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CCeEEEEEeccccCe-------------------EEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence            987444322211000                   1344444    33333333331   11111111   1167899999


Q ss_pred             CEEEEEecCCCCCcccceeecCCCcceee
Q 004785          316 ERISLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       316 ~rI~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                      +.|++...+.+.-..++..++.+....+|
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~~l  352 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVENAIQI  352 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTTCEEC
T ss_pred             CeEEEEEEccCCceEEEEEECCCCceEec
Confidence            99887544444444566666655544433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.63  E-value=2.3e-14  Score=165.87  Aligned_cols=240  Identities=9%  Similarity=-0.032  Sum_probs=157.3

Q ss_pred             EEEecCCCEEEEEeCC---------CeEEEEeCCCCC---CC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004785           75 EAGRDARRGLASWVEA---------ESLHHLRPKYCP---LS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~D---------gsIrlWd~~t~~---L~---gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg  139 (730)
                      .+.+.+++.|+++..+         +.|.+||+.+++   +.   +|...+..++|||||++|++++. +.|++||+.++
T Consensus        66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g  144 (723)
T 1xfd_A           66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK  144 (723)
T ss_dssp             EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred             EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence            3344567777777664         778899998774   33   44455899999999999999986 79999999999


Q ss_pred             eEEEEEecCCCCc------------------EEEEEccCCCCEEEEEeCCC-----------------------------
Q 004785          140 SCLKVLHGHRRTP------------------WVVRFHPLNPTIIASGSLDH-----------------------------  172 (730)
Q Consensus       140 ~~l~~l~gH~~~V------------------~sVafSP~dg~lLaSgS~Dg-----------------------------  172 (730)
                      +.......+...+                  ..++|+| +++.|++++.|+                             
T Consensus       145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  223 (723)
T 1xfd_A          145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGS  223 (723)
T ss_dssp             CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTS
T ss_pred             ceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCC
Confidence            8777666554444                  7899999 888888877553                             


Q ss_pred             -----cEEEEECCCCeEEEEec-C------CCCeEEEEEcCCCCEEEEEEC---C--eEEEEEcCCCccccCCeEE-ecC
Q 004785          173 -----EVRLWNASTAECIGSRD-F------YRPIASIAFHASGELLAVASG---H--KLYIWRYNMREETSSPRIV-LRT  234 (730)
Q Consensus       173 -----tVrLWDl~tg~~i~~l~-h------~~~V~sVafSPdG~~LAsgSd---d--~I~VWDl~t~~~~~~~~~l-~~h  234 (730)
                           +|++||+.+++....+. +      ...+..++|+|||++|++.++   +  .|++||+.+++...   .. ..+
T Consensus       224 ~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~  300 (723)
T 1xfd_A          224 ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK---KHEDES  300 (723)
T ss_dssp             CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE---EEEEEC
T ss_pred             CCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE---EEEecc
Confidence                 79999999887544433 2      457889999999998877752   1  39999998876432   22 223


Q ss_pred             CCCe----EEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEec-CCCCCC--CCcccccCCCCCCce
Q 004785          235 RRSL----RAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAG-AHSSSH--PGLAEEVPLITPPFL  307 (730)
Q Consensus       235 ~~~V----~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d-~~s~d~--~~L~~~~~~~slpil  307 (730)
                      ...+    ..++|+|||++|+..+...+-...               ....+.+++ ...+..  ......   ......
T Consensus       301 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~---------------~~~~l~~~d~~~~~~~~~~~~l~~---~~~~~~  362 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG---------------KFYHITVSSSQPNSSNDNIQSITS---GDWDVT  362 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSS---------------CEEEEEEECSSCCSSSCCCCBSCC---SSSCEE
T ss_pred             CCEEeccCCCceEcCCCCeEEEEEecccCCCc---------------ceeEEEEEeccCCCCccceeEeec---CCeEEE
Confidence            3333    378999999988876332111000               001344454 222220  111111   112233


Q ss_pred             -eeeEecCCCEEEEEecCCC-CCcccceeecC
Q 004785          308 -RPSFVRDDERISLQHTEHD-SGATRTQQSLR  337 (730)
Q Consensus       308 -~p~FSpDg~rI~~~~~~~d-sgs~~~~~~~~  337 (730)
                       .+.|+|||++|++....+. ....++..+..
T Consensus       363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             EEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence             4799999999998665532 22334444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.63  E-value=1.3e-14  Score=168.61  Aligned_cols=228  Identities=10%  Similarity=0.088  Sum_probs=153.8

Q ss_pred             CCCeEEEEECCCCCEEEEEeC-CC-----eEEEEECCCCeEEEEEecCCCC------------------------cEEEE
Q 004785          107 PRSTIAAAFSPDGKTLASTHG-DH-----TVKIIDCQTGSCLKVLHGHRRT------------------------PWVVR  156 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~-Dg-----tVrVWDl~tg~~l~~l~gH~~~------------------------V~sVa  156 (730)
                      ...+.+++|||||++|++++. |+     +|++||+.+++....+..+...                        |..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     9999999999887777655433                        78999


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCCC---eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNASTA---ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~tg---~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      |+| ++++|++++. ++|++||+.++   +......+...+..++|+|||++|++++++.|++||+.+++...   ....
T Consensus       116 ~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~---~~~~  190 (741)
T 2ecf_A          116 WSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQ---LTAD  190 (741)
T ss_dssp             ECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEE---CCCC
T ss_pred             ECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEE---eccC
Confidence            999 8898888876 89999999988   66555667788999999999999999998899999998876432   1222


Q ss_pred             CCCC----------------eEEEEEccCCCeEEEEEeeCCccC-C-------C---cceeEeccCCcccCCCCeEEEec
Q 004785          234 TRRS----------------LRAVHFHPHAAPLLLTAEVNDLDS-S-------E---SSLTLATSPGYWRYPPPVICMAG  286 (730)
Q Consensus       234 h~~~----------------V~sVaFSPdG~~Llatgsvwdl~s-~-------~---~~~~l~t~sG~~~~p~~~V~l~d  286 (730)
                      +...                +..+.|||||++|+++........ .       +   .........|. ......+.+++
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~-~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD-ANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS-CCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC-CCCeeEEEEEE
Confidence            2221                478999999999888765321100 0       0   00000001111 00112566677


Q ss_pred             CCC-CCCCCcccccCCCCCCceeeeEecCCCEEEEEecC-CCCCcccceeecCCCcce
Q 004785          287 AHS-SSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE-HDSGATRTQQSLRSSSSV  342 (730)
Q Consensus       287 ~~s-~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~-~dsgs~~~~~~~~ss~~~  342 (730)
                      ..+ +....+... ......+..+.| |||++|++...+ ......++.+++.+....
T Consensus       270 ~~~~~~~~~~~~~-~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~  325 (741)
T 2ecf_A          270 PAEQAQTQWIDLG-KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR  325 (741)
T ss_dssp             SSTTCCCEEECCC-SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred             CCCCCceEEecCC-CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence            655 443222211 112223447899 999999986542 222345566666554433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.62  E-value=3.4e-14  Score=164.41  Aligned_cols=234  Identities=14%  Similarity=0.117  Sum_probs=162.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCC-----CC----CCCCCCC--------------eEEEEECCCCCEEEEEe---------
Q 004785           79 DARRGLASWVEAESLHHLRPKY-----CP----LSPPPRS--------------TIAAAFSPDGKTLASTH---------  126 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t-----~~----L~gH~~~--------------Vt~lafSPDG~~LaSgS---------  126 (730)
                      .+++.|+.. .++.|.+|++.+     +.    ...+...              +.++.|||||++|++++         
T Consensus       130 pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~  208 (706)
T 2z3z_A          130 PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPT  208 (706)
T ss_dssp             TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCE
T ss_pred             CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceE
Confidence            456667764 679999999987     63    2223332              48999999999999998         


Q ss_pred             ------------------------CCCeEEEEECCCCeEEEEEe--cCCCCcEEEEEccCCCCEEEEEeCCC-----cEE
Q 004785          127 ------------------------GDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDH-----EVR  175 (730)
Q Consensus       127 ------------------------~DgtVrVWDl~tg~~l~~l~--gH~~~V~sVafSP~dg~lLaSgS~Dg-----tVr  175 (730)
                                              .+..|++||+.+++......  .|...+..++|+| +++.+++++.|+     .|+
T Consensus       209 ~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~v~  287 (706)
T 2z3z_A          209 PIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILYVAEVNRAQNECKVN  287 (706)
T ss_dssp             EEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEEEEEECTTSCEEEEE
T ss_pred             EeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEEEEEeCCCCCeeEEE
Confidence                                    44789999999988655442  4667789999999 888888877775     899


Q ss_pred             EEECCCC-eEEEEec--CCC---CeEEEEEcC--CCCEEEEEECC-eEEEEEcC-CCccccCCeEEecCCCCeEE-EEEc
Q 004785          176 LWNASTA-ECIGSRD--FYR---PIASIAFHA--SGELLAVASGH-KLYIWRYN-MREETSSPRIVLRTRRSLRA-VHFH  244 (730)
Q Consensus       176 LWDl~tg-~~i~~l~--h~~---~V~sVafSP--dG~~LAsgSdd-~I~VWDl~-t~~~~~~~~~l~~h~~~V~s-VaFS  244 (730)
                      +||+.++ +......  ...   .+..++|+|  ||++|++++.+ .++||+++ .++..   ..+..+...+.. ++|+
T Consensus       288 ~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~---~~l~~~~~~v~~~~~~s  364 (706)
T 2z3z_A          288 AYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI---RQVTKGEWEVTNFAGFD  364 (706)
T ss_dssp             EEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE---EECCCSSSCEEEEEEEC
T ss_pred             EEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE---EecCCCCeEEEeeeEEc
Confidence            9999998 4433332  222   246789999  99998888744 47888776 33322   245567777877 7999


Q ss_pred             cCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecC
Q 004785          245 PHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTE  324 (730)
Q Consensus       245 PdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~  324 (730)
                      |||+.+++++......                  ...+..++..++....+. .    ......+.|||||++|++...+
T Consensus       365 pdg~~l~~~~~~~~~~------------------~~~l~~~d~~~~~~~~l~-~----~~~~~~~~~spdg~~l~~~~~~  421 (706)
T 2z3z_A          365 PKGTRLYFESTEASPL------------------ERHFYCIDIKGGKTKDLT-P----ESGMHRTQLSPDGSAIIDIFQS  421 (706)
T ss_dssp             TTSSEEEEEESSSCTT------------------CBEEEEEETTCCCCEESC-C----SSSEEEEEECTTSSEEEEEEEC
T ss_pred             CCCCEEEEEecCCCCc------------------eEEEEEEEcCCCCceecc-C----CCceEEEEECCCCCEEEEEecC
Confidence            9999888776432100                  013444443333221111 1    1234578999999999998777


Q ss_pred             CCCCcccceeecCCCc
Q 004785          325 HDSGATRTQQSLRSSS  340 (730)
Q Consensus       325 ~dsgs~~~~~~~~ss~  340 (730)
                      ...+..++.+++.+..
T Consensus       422 ~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          422 PTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSCSCEEEEEESSSCE
T ss_pred             CCCCcEEEEEECCCCe
Confidence            7777788888877655

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.62  E-value=6.7e-14  Score=147.18  Aligned_cols=173  Identities=12%  Similarity=0.100  Sum_probs=120.2

Q ss_pred             CCCEEEEEeC---CCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECC-CCe--EEEEEe
Q 004785           80 ARRGLASWVE---AESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQ-TGS--CLKVLH  146 (730)
Q Consensus        80 ~g~~L~Sgs~---DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~-tg~--~l~~l~  146 (730)
                      +++ |+....   ++.|.+|++..+.      +..+...+..++|+|||++|++++ .++.|++||+. +++  .+..+.
T Consensus        50 dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~  128 (347)
T 3hfq_A           50 KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQ  128 (347)
T ss_dssp             TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceee
Confidence            444 554443   6889999987653      234677889999999999999888 68999999996 333  333332


Q ss_pred             cC---------CCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CCeEEEE----ecCCCCeEEEEEcCCCCEEEEEE--
Q 004785          147 GH---------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAECIGS----RDFYRPIASIAFHASGELLAVAS--  210 (730)
Q Consensus       147 gH---------~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~i~~----l~h~~~V~sVafSPdG~~LAsgS--  210 (730)
                      ..         ...+.+++|+| +++++++...++.|++||+. +++....    ......+..++|+|||++|++++  
T Consensus       129 ~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~  207 (347)
T 3hfq_A          129 HSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL  207 (347)
T ss_dssp             CCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC
Confidence            21         22478899999 66777777778999999998 5554322    12334678899999999888776  


Q ss_pred             CCeEEEEEcCC--CccccCCeEEecCC------CCeEEEEEccCCCeEEEEEe
Q 004785          211 GHKLYIWRYNM--REETSSPRIVLRTR------RSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       211 dd~I~VWDl~t--~~~~~~~~~l~~h~------~~V~sVaFSPdG~~Llatgs  255 (730)
                      ++.|++|+++.  ++... ........      ..+..++|+|||++++++..
T Consensus       208 ~~~v~v~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          208 SSQIASLKYDTQTGAFTQ-LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             TTEEEEEEEETTTTEEEE-EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEEEecCCCCceEE-eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence            34599999875  32211 11122222      45889999999998866553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.62  E-value=1.4e-13  Score=142.92  Aligned_cols=177  Identities=12%  Similarity=0.098  Sum_probs=128.1

Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEECCCCeEEEEE
Q 004785           75 EAGRDARRGLASWV-EAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDH---TVKIIDCQTGSCLKVL  145 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs-~DgsIrlWd~~t~~L-----~gH~~~Vt~lafSPDG~~LaSgS~Dg---tVrVWDl~tg~~l~~l  145 (730)
                      .+...+++.++... .++.|.+||..++++     ..+.....+++|+|||++|+++..++   .|++||+.+++.+..+
T Consensus        45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~  124 (331)
T 3u4y_A           45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI  124 (331)
T ss_dssp             EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE
Confidence            34444555555554 488999999987754     23444555599999999999554442   9999999999988887


Q ss_pred             ecCCCCcEEEEEccCCCC-EEEEEeCCCc-EEEEECCCCeEE-----EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEE
Q 004785          146 HGHRRTPWVVRFHPLNPT-IIASGSLDHE-VRLWNASTAECI-----GSRDFYRPIASIAFHASGELLAVAS--GHKLYI  216 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~-lLaSgS~Dgt-VrLWDl~tg~~i-----~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~V  216 (730)
                      ..+ ..+..++|+| +++ ++++...++. |.+|++.....+     ..+........++|+|||++|++++  ++.|++
T Consensus       125 ~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  202 (331)
T 3u4y_A          125 PIP-YDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI  202 (331)
T ss_dssp             ECC-TTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ECC-CCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence            754 4478999999 665 6666677788 999998764332     2234556789999999999877776  455999


Q ss_pred             EEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       217 WDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ||+.+++.... .........+..++|+|||++++++.
T Consensus       203 ~d~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~  239 (331)
T 3u4y_A          203 LETQNPENITL-LNAVGTNNLPGTIVVSRDGSTVYVLT  239 (331)
T ss_dssp             EECSSTTSCEE-EEEEECSSCCCCEEECTTSSEEEEEC
T ss_pred             EECCCCcccce-eeeccCCCCCceEEECCCCCEEEEEE
Confidence            99988765110 12333456788999999999877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.61  E-value=1.3e-14  Score=160.82  Aligned_cols=148  Identities=10%  Similarity=0.009  Sum_probs=121.0

Q ss_pred             EEEEecCCCEEE----EEeCCCeEEEEeCCCC---------------CCCCCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q 004785           74 FEAGRDARRGLA----SWVEAESLHHLRPKYC---------------PLSPPPRSTIAAAFSPD-GKTLASTHGDHTVKI  133 (730)
Q Consensus        74 l~a~~d~g~~L~----Sgs~DgsIrlWd~~t~---------------~L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrV  133 (730)
                      .++....+..|+    +++.|++|++||+.+.               .+.+|...|.+++|+|+ +.+|++++.|++|++
T Consensus        97 ~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i  176 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV  176 (434)
T ss_dssp             EEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence            344445677888    7889999999997532               35679999999999997 889999999999999


Q ss_pred             EECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-C-------CCCeEEEEEcCCCCE
Q 004785          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-F-------YRPIASIAFHASGEL  205 (730)
Q Consensus       134 WDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h-------~~~V~sVafSPdG~~  205 (730)
                      ||++++..+....+|...|.+++|+| ++++|++|+.|++|++||++ ++....+. +       ...|.+++|++++.+
T Consensus       177 wD~~~~~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~  254 (434)
T 2oit_A          177 LQVTETVKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVF  254 (434)
T ss_dssp             EEESSSEEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEE
T ss_pred             EEcCCCcceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceE
Confidence            99999987777788999999999999 89999999999999999998 55544432 1       237899999999988


Q ss_pred             EEEEE--CC------eEEEEEcCCCc
Q 004785          206 LAVAS--GH------KLYIWRYNMRE  223 (730)
Q Consensus       206 LAsgS--dd------~I~VWDl~t~~  223 (730)
                      +++.+  ++      .+++||+++.+
T Consensus       255 l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          255 AIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             EEEEccCCCccCCCCceEEEEeccCC
Confidence            86654  21      29999998754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.61  E-value=7.5e-14  Score=143.93  Aligned_cols=141  Identities=15%  Similarity=0.167  Sum_probs=113.4

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCC----C-CCCC-CeEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEEec-C----C
Q 004785           82 RGLASWVEAESLHHLRPKYCPL----S-PPPR-STIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHG-H----R  149 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~L----~-gH~~-~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~g-H----~  149 (730)
                      ..++++..+++|.+||..++++    . ++.. .+..++|+|||++|+ ++..++.|.+||+.+++.+..+.. +    .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4678889999999999987632    1 2222 478999999998765 455578999999999998877753 2    1


Q ss_pred             CCcEEEEEccCCCCEEEEEe------------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004785          150 RTPWVVRFHPLNPTIIASGS------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW  217 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS------------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VW  217 (730)
                      ..+..++|+| +++++++++            .++.|.+||+.+++.+..+.....+..++|+|||++|+++ ++.|++|
T Consensus        82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SSSEEEE
T ss_pred             ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CCeEEEE
Confidence            2577899999 887777775            5799999999999988887767778899999999988888 5679999


Q ss_pred             EcCCCcc
Q 004785          218 RYNMREE  224 (730)
Q Consensus       218 Dl~t~~~  224 (730)
                      |+.+++.
T Consensus       160 d~~~~~~  166 (337)
T 1pby_B          160 DPEAGTL  166 (337)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCcE
Confidence            9988764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.60  E-value=3.9e-14  Score=166.48  Aligned_cols=241  Identities=12%  Similarity=0.046  Sum_probs=156.8

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCC-----CeEEEEECCCCCEEEEEeCC---------CeEEEEECCCCeE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPR-----STIAAAFSPDGKTLASTHGD---------HTVKIIDCQTGSC  141 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~-----~Vt~lafSPDG~~LaSgS~D---------gtVrVWDl~tg~~  141 (730)
                      ++..+++.  |++|++||..++.    +.+|..     ....+.|||||++|++++.+         +.+++||+.+++.
T Consensus        27 dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~  104 (740)
T 4a5s_A           27 DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (740)
T ss_dssp             SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence            44666665  8999999998773    344543     23458999999999999886         5667999999985


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec--CCCCe-----------------EEEEEcCC
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD--FYRPI-----------------ASIAFHAS  202 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~--h~~~V-----------------~sVafSPd  202 (730)
                      . .+..|.+.+..++||| +++.|+.+ .|+.|++||+.+++..+...  +...+                 ..+.||||
T Consensus       105 ~-~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD  181 (740)
T 4a5s_A          105 I-TEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN  181 (740)
T ss_dssp             C-CSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT
T ss_pred             E-EcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCC
Confidence            4 4677788899999999 88888877 46899999999887665432  22222                 35899999


Q ss_pred             CCEEEEEE-C-C-----------------------------------eEEEEEcCC---CccccCCeEEe------cCCC
Q 004785          203 GELLAVAS-G-H-----------------------------------KLYIWRYNM---REETSSPRIVL------RTRR  236 (730)
Q Consensus       203 G~~LAsgS-d-d-----------------------------------~I~VWDl~t---~~~~~~~~~l~------~h~~  236 (730)
                      |++||..+ + .                                   .|++||+.+   ++... ...+.      ++..
T Consensus       182 g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~-~~~l~~~~~~~~~~~  260 (740)
T 4a5s_A          182 GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT-SIQITAPASMLIGDH  260 (740)
T ss_dssp             SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC-EEEECCCHHHHTSCE
T ss_pred             CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce-EEEecCCccCCCCCe
Confidence            99999875 1 1                                   377888877   53111 11122      2667


Q ss_pred             CeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCC----CC---CcccccCCCCCC---c
Q 004785          237 SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSS----HP---GLAEEVPLITPP---F  306 (730)
Q Consensus       237 ~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d----~~---~L~~~~~~~slp---i  306 (730)
                      .+..++|+|||+.++.......-              .     ..+.+++..++.    +.   .+........+.   .
T Consensus       261 ~~~~~~wspdg~~~~~~~~r~~~--------------~-----~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          261 YLCDVTWATQERISLQWLRRIQN--------------Y-----SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (740)
T ss_dssp             EEEEEEEEETTEEEEEEEESSTT--------------E-----EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             EEEEEEEeCCCeEEEEEeCCCCC--------------E-----EEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence            78999999999966544321000              0     123444433333    11   111111111111   2


Q ss_pred             eeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeee
Q 004785          307 LRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (730)
Q Consensus       307 l~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~  345 (730)
                      ..|.|+|||+.|++...+.+.-..++..++++....+|+
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc
Confidence            258999999999854444444457788888777766665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.56  E-value=1.3e-13  Score=159.57  Aligned_cols=235  Identities=12%  Similarity=0.105  Sum_probs=153.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-----CeEEEEEecCCCC--
Q 004785           82 RGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-----GSCLKVLHGHRRT--  151 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-----g~~l~~l~gH~~~--  151 (730)
                      +.++.. .++.|++||..+++   +..+...+.+++|||||++|+++ .|+.|++||+.+     ++.......+...  
T Consensus        93 ~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~  170 (706)
T 2z3z_A           93 GLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV  170 (706)
T ss_dssp             TEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred             CeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence            444433 35999999998773   45677789999999999999995 679999999998     8766544444332  


Q ss_pred             ------------cEEEEEccCCCCEEEEEe---------------------------------CCCcEEEEECCCCeEEE
Q 004785          152 ------------PWVVRFHPLNPTIIASGS---------------------------------LDHEVRLWNASTAECIG  186 (730)
Q Consensus       152 ------------V~sVafSP~dg~lLaSgS---------------------------------~DgtVrLWDl~tg~~i~  186 (730)
                                  +.++.|+| ++++|++++                                 .+..|++||+.+++...
T Consensus       171 ~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~  249 (706)
T 2z3z_A          171 YGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY  249 (706)
T ss_dssp             ESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred             cccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence                        47899999 889888887                                 44679999999988765


Q ss_pred             Ee---cCCCCeEEEEEcCCCCEEEEEE-CC-----eEEEEEcCCCccccCCeEEecCCC---CeEEEEEcc--CCCeEEE
Q 004785          187 SR---DFYRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREETSSPRIVLRTRR---SLRAVHFHP--HAAPLLL  252 (730)
Q Consensus       187 ~l---~h~~~V~sVafSPdG~~LAsgS-dd-----~I~VWDl~t~~~~~~~~~l~~h~~---~V~sVaFSP--dG~~Lla  252 (730)
                      ..   .+...+..++|+|||++|++++ +.     .|++||+.+++.... .....+..   .+..+.|+|  ||+++++
T Consensus       250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~sp~~dg~~l~~  328 (706)
T 2z3z_A          250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT-LFVETDKHYVEPLHPLTFLPGSNNQFIWQ  328 (706)
T ss_dssp             CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE-EEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred             eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE-EEEccCCCeECccCCceeecCCCCEEEEE
Confidence            54   3556789999999999888876 33     599999988833221 11112222   246789999  9985544


Q ss_pred             EEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCcee-eeEecCCCEEEEEecCCCC-Ccc
Q 004785          253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR-PSFVRDDERISLQHTEHDS-GAT  330 (730)
Q Consensus       253 tgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~-p~FSpDg~rI~~~~~~~ds-gs~  330 (730)
                      +.. ...                    ..+...+... ......   ......... +.|++|+++|++....+.. ...
T Consensus       329 ~~~-~g~--------------------~~l~~~~~~~-~~~~~l---~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~  383 (706)
T 2z3z_A          329 SRR-DGW--------------------NHLYLYDTTG-RLIRQV---TKGEWEVTNFAGFDPKGTRLYFESTEASPLERH  383 (706)
T ss_dssp             ECT-TSS--------------------CEEEEEETTS-CEEEEC---CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred             Ecc-CCc--------------------cEEEEEECCC-CEEEec---CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence            321 110                    0111111100 000000   011223333 7999999999886654331 246


Q ss_pred             cceeecCCCcceeee
Q 004785          331 RTQQSLRSSSSVRLL  345 (730)
Q Consensus       331 ~~~~~~~ss~~~~l~  345 (730)
                      ++..++.+....+++
T Consensus       384 l~~~d~~~~~~~~l~  398 (706)
T 2z3z_A          384 FYCIDIKGGKTKDLT  398 (706)
T ss_dssp             EEEEETTCCCCEESC
T ss_pred             EEEEEcCCCCceecc
Confidence            677776655544443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.56  E-value=4.8e-13  Score=139.40  Aligned_cols=174  Identities=11%  Similarity=0.078  Sum_probs=135.1

Q ss_pred             EEecCCCEEEEEe--CCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec--
Q 004785           76 AGRDARRGLASWV--EAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG--  147 (730)
Q Consensus        76 a~~d~g~~L~Sgs--~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g--  147 (730)
                      +...+++.++...  .++.|.+||..+++    +..+...+.+++|+|||++|++++.++.|.+||..+++.+..+..  
T Consensus       147 ~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~  226 (353)
T 3vgz_A          147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLD  226 (353)
T ss_dssp             EEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCC
Confidence            3444555555544  57889999998763    333555688999999999999999999999999999998887764  


Q ss_pred             --CCCCcEEEEEccCCCCEEEE-EeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004785          148 --HRRTPWVVRFHPLNPTIIAS-GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR  222 (730)
Q Consensus       148 --H~~~V~sVafSP~dg~lLaS-gS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~  222 (730)
                        +...+..++|+| +++.++. ...++.|.+||+.+++.+..+..... ..++|+|+|++|+++.  ++.|.+||..++
T Consensus       227 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          227 DGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             SSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence              556688899999 6665544 45569999999999998877764443 5699999999877776  455999999888


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +...    .......+..++|+|||++++++..
T Consensus       305 ~~~~----~~~~~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          305 KVVK----TFDTPTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             EEEE----EEECCSEEEEEEECTTSCEEEEEEE
T ss_pred             eEEE----EEecCCCCCeEEEcCCCCEEEEEEc
Confidence            7543    2334457899999999998777665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.56  E-value=3.1e-13  Score=164.90  Aligned_cols=169  Identities=9%  Similarity=0.002  Sum_probs=142.3

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC---CCCCCCC-CeEEEEECCCCCEEEEEeCCCeEE-EEECCCCeEEEEEecCCCCcE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC---PLSPPPR-STIAAAFSPDGKTLASTHGDHTVK-IIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~-~Vt~lafSPDG~~LaSgS~DgtVr-VWDl~tg~~l~~l~gH~~~V~  153 (730)
                      .+++.|+.+. ++.|.+|+...+   .+..|.. .+..++|+ ||+.|++++.+..+. +||+.+++.. .+.+|...+.
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~  382 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVF  382 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEE
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCcccee
Confidence            4556666666 788999998776   3667777 89999999 999999999988999 9999887654 4448888899


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC-C----------eEEEEEcCC
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG-H----------KLYIWRYNM  221 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd-d----------~I~VWDl~t  221 (730)
                      .++|+| ++++|++++.|+.|++||+.+++....+ .+...+.+++|+|||++|++++. +          .|++||+.+
T Consensus       383 ~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          383 AMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             EEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             eeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            999999 9999999999999999999999888776 68888999999999999988763 3          499999988


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ++.    ..+..|...+..++|+|||++|++.+.
T Consensus       462 g~~----~~l~~~~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          462 RKI----FAATTENSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             TEE----EECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             CcE----EEeeCCCcccCCceEcCCCCEEEEEec
Confidence            752    245677788999999999998887765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.55  E-value=4.7e-13  Score=142.12  Aligned_cols=243  Identities=10%  Similarity=0.009  Sum_probs=155.3

Q ss_pred             cCCCEEEEEeC-CC--eEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           79 DARRGLASWVE-AE--SLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        79 d~g~~L~Sgs~-Dg--sIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      .+++.|+..+. ++  .|.+||+.++.    ..++...+..+.|+|||+.|++++.++.|++||+.+++....+..+...
T Consensus        45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~  124 (388)
T 3pe7_A           45 RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW  124 (388)
T ss_dssp             TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE
T ss_pred             CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc
Confidence            35566666665 56  38888887762    3345555557889999999999999999999999999988777777665


Q ss_pred             cEEEEE--ccCCCCEEEEE----------------------eCCCcEEEEECCCCeEEEEecCCCCeEEEEEcC-CCCEE
Q 004785          152 PWVVRF--HPLNPTIIASG----------------------SLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELL  206 (730)
Q Consensus       152 V~sVaf--SP~dg~lLaSg----------------------S~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSP-dG~~L  206 (730)
                      +....|  +| ++.+++..                      ..+..|++||+.+++......+...+..+.|+| ||+.|
T Consensus       125 ~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l  203 (388)
T 3pe7_A          125 VGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTV  203 (388)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEE
T ss_pred             ccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEE
Confidence            544444  78 77777642                      244679999999998877777778899999999 99988


Q ss_pred             EEEECC-------eEEEEEcCCCccccCCeEEecCC--CCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccC
Q 004785          207 AVASGH-------KLYIWRYNMREETSSPRIVLRTR--RSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRY  277 (730)
Q Consensus       207 AsgSdd-------~I~VWDl~t~~~~~~~~~l~~h~--~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~  277 (730)
                      +....+       .|+++|...+...    .+..+.  ..+..+.|+|||+.|+..+....-.                 
T Consensus       204 ~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-----------------  262 (388)
T 3pe7_A          204 AFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP-----------------  262 (388)
T ss_dssp             EEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC-----------------
T ss_pred             EEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccceECCCCCEEEEEecCCCCC-----------------
Confidence            887732       3888887665432    233333  3578899999999887765421100                 


Q ss_pred             CCCeEEEecCCCCCCCCcccccCCCCCC---ceeeeEecCCCEEEEEecCC-----CCCcccceeecCCCcceeee
Q 004785          278 PPPVICMAGAHSSSHPGLAEEVPLITPP---FLRPSFVRDDERISLQHTEH-----DSGATRTQQSLRSSSSVRLL  345 (730)
Q Consensus       278 p~~~V~l~d~~s~d~~~L~~~~~~~slp---il~p~FSpDg~rI~~~~~~~-----dsgs~~~~~~~~ss~~~~l~  345 (730)
                       ...+.+++..++....+.... .....   .-...|+|||++|++...+.     .....++.+++.+....+|+
T Consensus       263 -~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (388)
T 3pe7_A          263 -DRFIYSADPETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA  336 (388)
T ss_dssp             -CEEEEEECTTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred             -cceEEEEecCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence             012444444433322221110 00000   00137999999999854321     33446777777665555443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.55  E-value=3.5e-13  Score=139.85  Aligned_cols=143  Identities=13%  Similarity=0.088  Sum_probs=110.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCC----CCC-CCCeEEEEECCCCCEEEE-EeCCCeEEEEECCCCeEEEEEecCC---
Q 004785           79 DARRGLASWVEAESLHHLRPKYCPL----SPP-PRSTIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHGHR---  149 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~L----~gH-~~~Vt~lafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~gH~---  149 (730)
                      .++..+++...+++|.+||..++++    ..+ ...+..++|+|||++++. ...++.|++||+.+++.+..+..+.   
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            4667788899999999999987632    222 225789999999987654 4568999999999999887776432   


Q ss_pred             ---CCcEEEEEccCCCCEEEEEeCC------------CcEEEEECCCCe---EEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004785          150 ---RTPWVVRFHPLNPTIIASGSLD------------HEVRLWNASTAE---CIGSRDFYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       150 ---~~V~sVafSP~dg~lLaSgS~D------------gtVrLWDl~tg~---~i~~l~h~~~V~sVafSPdG~~LAsgSd  211 (730)
                         ..+..++|+| +++++++++.+            +.|.+||+.+++   .+..+.+...+.+++|+|||+ |+++ +
T Consensus        89 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~  165 (349)
T 1jmx_B           89 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-G  165 (349)
T ss_dssp             EEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-S
T ss_pred             cccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc-c
Confidence               2378899999 88888887765            899999998854   334455566788999999999 5554 4


Q ss_pred             CeEEEEEcCCCcc
Q 004785          212 HKLYIWRYNMREE  224 (730)
Q Consensus       212 d~I~VWDl~t~~~  224 (730)
                      +.|++||+.+++.
T Consensus       166 ~~i~~~d~~~~~~  178 (349)
T 1jmx_B          166 PDIYKMDVKTGKY  178 (349)
T ss_dssp             SSEEEECTTTCCE
T ss_pred             CcEEEEeCCCCce
Confidence            4499999988764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.54  E-value=9.1e-14  Score=161.36  Aligned_cols=175  Identities=10%  Similarity=0.075  Sum_probs=126.4

Q ss_pred             EEecCCCEEEEEeC---------CCeEEEEeCCCCCC---CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 004785           76 AGRDARRGLASWVE---------AESLHHLRPKYCPL---SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK  143 (730)
Q Consensus        76 a~~d~g~~L~Sgs~---------DgsIrlWd~~t~~L---~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~  143 (730)
                      +.+.+++.|+.++.         ++.|++||+.+++.   ......+..++|||||++|+++. |++|++||+.+++...
T Consensus        66 ~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A           66 GLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             EECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence            34456777776665         68999999988765   44456789999999999999986 7899999999887654


Q ss_pred             EE-ecCCCCc-----------------EEEEEccCCCCEEEEEeCCC---------------------------------
Q 004785          144 VL-HGHRRTP-----------------WVVRFHPLNPTIIASGSLDH---------------------------------  172 (730)
Q Consensus       144 ~l-~gH~~~V-----------------~sVafSP~dg~lLaSgS~Dg---------------------------------  172 (730)
                      .. .++...|                 ..++|+| +++.|++++.|.                                 
T Consensus       145 l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~  223 (719)
T 1z68_A          145 ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPV  223 (719)
T ss_dssp             CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCE
T ss_pred             EecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCe
Confidence            32 2332222                 4899999 889998887652                                 


Q ss_pred             -cEEEEECCCCeEE---EE------ecCCCCeEEEEEcCCCCEEEEEEC--C---eEEEEE----cCCCccccCCe-EEe
Q 004785          173 -EVRLWNASTAECI---GS------RDFYRPIASIAFHASGELLAVASG--H---KLYIWR----YNMREETSSPR-IVL  232 (730)
Q Consensus       173 -tVrLWDl~tg~~i---~~------l~h~~~V~sVafSPdG~~LAsgSd--d---~I~VWD----l~t~~~~~~~~-~l~  232 (730)
                       +|++||+.+++.+   ..      ..+...+..++|+|||+++++..+  .   .|++||    +.+++...... ...
T Consensus       224 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~  303 (719)
T 1z68_A          224 VRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEE  303 (719)
T ss_dssp             EEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEE
T ss_pred             eEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccc
Confidence             7899999987652   21      136667899999999887777542  1   288999    76665433110 013


Q ss_pred             cCCCCeE-----EEEEccCCCeEEE
Q 004785          233 RTRRSLR-----AVHFHPHAAPLLL  252 (730)
Q Consensus       233 ~h~~~V~-----sVaFSPdG~~Lla  252 (730)
                      .|...+.     .+.|+|||+.++.
T Consensus       304 ~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          304 SRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             cCCceEccccCCccEECCCCCeEEE
Confidence            5666666     8899999997766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.54  E-value=4.6e-13  Score=138.00  Aligned_cols=167  Identities=17%  Similarity=0.125  Sum_probs=120.7

Q ss_pred             cCCCE-EEEEeCCCeEEEEeCCCCCCC-----CC----CCCeEEEEECCCCCEEEEEe------------CCCeEEEEEC
Q 004785           79 DARRG-LASWVEAESLHHLRPKYCPLS-----PP----PRSTIAAAFSPDGKTLASTH------------GDHTVKIIDC  136 (730)
Q Consensus        79 d~g~~-L~Sgs~DgsIrlWd~~t~~L~-----gH----~~~Vt~lafSPDG~~LaSgS------------~DgtVrVWDl  136 (730)
                      .+++. +++...++.|.+||..+++..     ++    ...+.+++|+|||++|+++.            .++.|++||+
T Consensus        43 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~  122 (337)
T 1pby_B           43 PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA  122 (337)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET
T ss_pred             CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEEC
Confidence            34444 456667889999999876421     11    12677899999999999886            5799999999


Q ss_pred             CCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC-------------------------
Q 004785          137 QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY-------------------------  191 (730)
Q Consensus       137 ~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~-------------------------  191 (730)
                      .+++.+..+.. ...+..++|+| ++++++++  ++.|++||+.+++.+..+...                         
T Consensus       123 ~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  198 (337)
T 1pby_B          123 ETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM  198 (337)
T ss_dssp             TTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEE
T ss_pred             CCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCce
Confidence            99998887765 45578899999 77766666  688999999988776544311                         


Q ss_pred             ------------------------------------------CCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCe
Q 004785          192 ------------------------------------------RPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPR  229 (730)
Q Consensus       192 ------------------------------------------~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~  229 (730)
                                                                ..+.+++|+|||++|+++ ++.|++||+.+++...   
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~---  274 (337)
T 1pby_B          199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIK---  274 (337)
T ss_dssp             EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEE---
T ss_pred             eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcc---
Confidence                                                      123457888888888777 5668888887765433   


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEEE
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                       .......+.+++|+|||+++++++
T Consensus       275 -~~~~~~~~~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          275 -RVPLPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             -EEECSSCCCEEEECTTSCEEEEES
T ss_pred             -eecCCCceeeEEECCCCCEEEEEc
Confidence             222334677888888888766653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.53  E-value=3.2e-13  Score=164.73  Aligned_cols=238  Identities=8%  Similarity=-0.017  Sum_probs=163.4

Q ss_pred             CCCEEEEEeCCCeEE-EEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLH-HLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIr-lWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ++..|+.++.+..+. +|+..++   .+.+|...+..++|||||++|++++.++.|++||+.+++....+.+|.+.+..+
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  426 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence            445677777777888 8898765   355788899999999999999999999999999999999888888899999999


Q ss_pred             EEccCCCCEEEEEeCCC----------cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcc
Q 004785          156 RFHPLNPTIIASGSLDH----------EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREE  224 (730)
Q Consensus       156 afSP~dg~lLaSgS~Dg----------tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~  224 (730)
                      +|+| +++++++++.++          .|++||+.+++......+...+..++|+|||++|+++++. ...+|+......
T Consensus       427 ~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~  505 (1045)
T 1k32_A          427 TISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  505 (1045)
T ss_dssp             EECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             EECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence            9999 888888876644          8999999998855556677888999999999999988853 355555322111


Q ss_pred             ----------------------------------------ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCc
Q 004785          225 ----------------------------------------TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSES  264 (730)
Q Consensus       225 ----------------------------------------~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~  264 (730)
                                                              ......+..+...+..+.|+|||+++++........    
T Consensus       506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~----  581 (1045)
T 1k32_A          506 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA----  581 (1045)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHH----
T ss_pred             ccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccc----
Confidence                                                    001112233556788999999997666422100000    


Q ss_pred             ceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCc
Q 004785          265 SLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSS  340 (730)
Q Consensus       265 ~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~  340 (730)
                       .... ..+    ....+..++..++....+.       .......||+||++|++...+     ....+++.+..
T Consensus       582 -~~~~-~~~----~~~~l~~~d~~~~~~~~l~-------~~v~~~~~S~DG~~l~~~~~~-----~i~~~d~~~~~  639 (1045)
T 1k32_A          582 -AYYQ-GAP----EKGVLLKYDVKTRKVTEVK-------NNLTDLRLSADRKTVMVRKDD-----GKIYTFPLEKP  639 (1045)
T ss_dssp             -HHHH-CCC----CCEEEEEEETTTCCEEEEE-------EEEEEEEECTTSCEEEEEETT-----SCEEEEESSCT
T ss_pred             -cccc-ccC----CCceEEEEECCCCcEEEee-------cCcceEEECCCCCEEEEEcCC-----cEEEEeCccCc
Confidence             0000 000    0124555554444322222       123467899999999986443     35566665443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.53  E-value=1.4e-12  Score=134.75  Aligned_cols=175  Identities=11%  Similarity=0.094  Sum_probs=123.7

Q ss_pred             EEecCCCEEEEEeCC-CeEEEEeCC--CCC------CCCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECC---CCeEE
Q 004785           76 AGRDARRGLASWVEA-ESLHHLRPK--YCP------LSPPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQ---TGSCL  142 (730)
Q Consensus        76 a~~d~g~~L~Sgs~D-gsIrlWd~~--t~~------L~gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~---tg~~l  142 (730)
                      +...++..|+.+..+ +.|.+|++.  ++.      +..+ ..+..++|+|+|++|++++. ++.|++||+.   +++.+
T Consensus        44 ~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~  122 (343)
T 1ri6_A           44 VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV  122 (343)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccc
Confidence            334466777777766 899999987  443      2222 37889999999998877765 8899999994   34455


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEe-CCCcEEEEECCC-CeEEE------EecCCCCeEEEEEcCCCCEEEEEE--CC
Q 004785          143 KVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNAST-AECIG------SRDFYRPIASIAFHASGELLAVAS--GH  212 (730)
Q Consensus       143 ~~l~gH~~~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~t-g~~i~------~l~h~~~V~sVafSPdG~~LAsgS--dd  212 (730)
                      ..+..+ ..+.+++|+| +++++++++ .|+.|++||+.+ ++...      .......+..++|+|+|++|++++  ++
T Consensus       123 ~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~  200 (343)
T 1ri6_A          123 DVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS  200 (343)
T ss_dssp             EEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred             ccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC
Confidence            555544 4588999999 777777666 899999999987 65432      122445788999999999887766  45


Q ss_pred             eEEEEEcCC--CccccCCeEEe------cCCCCeEEEEEccCCCeEEEEE
Q 004785          213 KLYIWRYNM--REETSSPRIVL------RTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       213 ~I~VWDl~t--~~~~~~~~~l~------~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .|++||++.  ++... .....      .....+..++|+|+|++++++.
T Consensus       201 ~i~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~  249 (343)
T 1ri6_A          201 SVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWAADIHITPDGRHLYACD  249 (343)
T ss_dssp             EEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEecCCCCcEEE-EeeccccCccccccCCccceEECCCCCEEEEEe
Confidence            599999964  22110 11111      1134577899999999887665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.53  E-value=3.3e-13  Score=158.56  Aligned_cols=225  Identities=8%  Similarity=0.027  Sum_probs=149.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc-----EEEEEccCCCCEEEEEeCC---------CcEE
Q 004785          110 TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP-----WVVRFHPLNPTIIASGSLD---------HEVR  175 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V-----~sVafSP~dg~lLaSgS~D---------gtVr  175 (730)
                      ...+.|+|||++|+++  |++|++||+.++++...+.+|....     ..++||| +++.++.++.+         +.+.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccceEEE
Confidence            5689999999998886  8999999999999888888876432     3478999 88988888876         5667


Q ss_pred             EEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCe-----------------
Q 004785          176 LWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSL-----------------  238 (730)
Q Consensus       176 LWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V-----------------  238 (730)
                      +||+.+++......+...+..++|||||+.||.+.++.|++||+.+++...  ....++...+                 
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~--lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR--ITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE--CCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE--EcCCCCccceecCcccccccchhcCCC
Confidence            999999988776667788999999999999999999899999998776432  0111222112                 


Q ss_pred             EEEEEccCCCeEEEEEee------CCccCCCc-----c---eeEeccCCcccCCCCeEEEecCCC---CCCCCcccccC-
Q 004785          239 RAVHFHPHAAPLLLTAEV------NDLDSSES-----S---LTLATSPGYWRYPPPVICMAGAHS---SSHPGLAEEVP-  300 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgsv------wdl~s~~~-----~---~~l~t~sG~~~~p~~~V~l~d~~s---~d~~~L~~~~~-  300 (730)
                      ..+.|||||++|+.....      |.+.....     .   .......|.. .+...+.+++..+   ++......... 
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~-~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV-NPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC-CCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc-CCeeEEEEEECCCCCCCCcceEEEecCC
Confidence            358999999988876542      22110000     0   0000111211 1112467778766   53211111111 


Q ss_pred             ----CCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCc
Q 004785          301 ----LITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSS  340 (730)
Q Consensus       301 ----~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~  340 (730)
                          +...-+..+.|||||+.+++..++......+..+++.+..
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence                1112234799999999877766655444556666666544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.51  E-value=2.8e-13  Score=153.66  Aligned_cols=166  Identities=11%  Similarity=0.070  Sum_probs=119.7

Q ss_pred             EecCCCEEEEEeC-CCeEEEEeCCCC---CCCCCC-CCeEEEEECCCCCEEEEEeC---CCeEEEEECCC---CeEEEEE
Q 004785           77 GRDARRGLASWVE-AESLHHLRPKYC---PLSPPP-RSTIAAAFSPDGKTLASTHG---DHTVKIIDCQT---GSCLKVL  145 (730)
Q Consensus        77 ~~d~g~~L~Sgs~-DgsIrlWd~~t~---~L~gH~-~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~t---g~~l~~l  145 (730)
                      ...+|+.|+..+. |+++++|+++.+   ++..|. ..+..++|||| +++++++.   +...+||.+..   +... .+
T Consensus        29 ~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l  106 (582)
T 3o4h_A           29 GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL  106 (582)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-EC
T ss_pred             cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cc
Confidence            3447778887776 999999998765   355665 58999999999 77777765   45455554432   3322 44


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-----eEEEEEcC
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----KLYIWRYN  220 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-----~I~VWDl~  220 (730)
                      .... .+...+|+|++..++++...++.+.+||+.+++......+..  .+++|+|||++|++++.+     .|++||+.
T Consensus       107 ~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~  183 (582)
T 3o4h_A          107 EAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS  183 (582)
T ss_dssp             TTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETT
T ss_pred             cCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCC
Confidence            3332 355678999444455555555556699999998777665544  789999999999977632     39999998


Q ss_pred             CCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          221 MREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       221 t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      +++.    ..+..+...+..++|||||++|+
T Consensus       184 ~g~~----~~l~~~~~~~~~~~~SpDG~~l~  210 (582)
T 3o4h_A          184 SGGL----RVFDSGEGSFSSASISPGMKVTA  210 (582)
T ss_dssp             TCCC----EEECCSSCEEEEEEECTTSCEEE
T ss_pred             CCCc----eEeecCCCccccceECCCCCEEE
Confidence            8764    24677888899999999999887

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.51  E-value=1e-12  Score=138.16  Aligned_cols=147  Identities=11%  Similarity=0.146  Sum_probs=103.7

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCe--EEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCcEEEEE
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWN  178 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~--~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~DgtVrLWD  178 (730)
                      .+...+..++|+|||+ |++++.   ++.|++||+.+++  .+..+..+...+..++|+| +++++++++ .+++|.+||
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEE
Confidence            3556778899999999 655554   6899999998776  4455556778899999999 888777777 789999999


Q ss_pred             CC-CCe--EEEEecCC----------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcC-CCccccCCeE-EecCCCCeEEEE
Q 004785          179 AS-TAE--CIGSRDFY----------RPIASIAFHASGELLAVAS-GHKLYIWRYN-MREETSSPRI-VLRTRRSLRAVH  242 (730)
Q Consensus       179 l~-tg~--~i~~l~h~----------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~-t~~~~~~~~~-l~~h~~~V~sVa  242 (730)
                      +. +++  .+..+.+.          ..+.+++|+|||+++++.. ++.|++||+. .++... ... .......+..++
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~p~~~~  193 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE-QSVLTMEAGFGPRHLV  193 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE-EEEEECCTTCCEEEEE
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE-eeeEEcCCCCCCceEE
Confidence            96 333  23333222          2488999999999444433 4459999998 333211 111 122344688999


Q ss_pred             EccCCCeEEEEE
Q 004785          243 FHPHAAPLLLTA  254 (730)
Q Consensus       243 FSPdG~~Llatg  254 (730)
                      |+|||++++++.
T Consensus       194 ~spdg~~l~v~~  205 (347)
T 3hfq_A          194 FSPDGQYAFLAG  205 (347)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            999999777765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.47  E-value=1.1e-12  Score=136.15  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=121.1

Q ss_pred             ecCCCEE-EEEeCCCeEEEEeCCCCCC----C-CC-----CCCeEEEEECCCCCEEEEEeCC------------CeEEEE
Q 004785           78 RDARRGL-ASWVEAESLHHLRPKYCPL----S-PP-----PRSTIAAAFSPDGKTLASTHGD------------HTVKII  134 (730)
Q Consensus        78 ~d~g~~L-~Sgs~DgsIrlWd~~t~~L----~-gH-----~~~Vt~lafSPDG~~LaSgS~D------------gtVrVW  134 (730)
                      ..+++.+ ++...++.|.+||..+++.    . .+     ...+.+++|+|||++|++++.+            +.|.+|
T Consensus        51 s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~  130 (349)
T 1jmx_B           51 APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF  130 (349)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEE
Confidence            3344544 5556789999999987632    1 22     2237899999999999999865            899999


Q ss_pred             ECCCCe---EEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC-------------------
Q 004785          135 DCQTGS---CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR-------------------  192 (730)
Q Consensus       135 Dl~tg~---~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~-------------------  192 (730)
                      |+.+++   .+..+..+ ..+.+++|+| +++ ++.++  +.|++||+.+++.+..+....                   
T Consensus       131 d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (349)
T 1jmx_B          131 STADGLEAKPVRTFPMP-RQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS  205 (349)
T ss_dssp             EGGGGGGBCCSEEEECC-SSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCC
T ss_pred             ECCCccccceeeeccCC-CcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCC
Confidence            998854   33445444 3588999999 777 44444  349999999988776553221                   


Q ss_pred             --------------------------------------------------CeEEEEEcC-CCCEEEEEECCeEEEEEcCC
Q 004785          193 --------------------------------------------------PIASIAFHA-SGELLAVASGHKLYIWRYNM  221 (730)
Q Consensus       193 --------------------------------------------------~V~sVafSP-dG~~LAsgSdd~I~VWDl~t  221 (730)
                                                                        .+..++|+| ||++|+++ ++.|++||+.+
T Consensus       206 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~  284 (349)
T 1jmx_B          206 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ  284 (349)
T ss_dssp             TTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT
T ss_pred             cceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc
Confidence                                                              345677889 99999988 77799999988


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ++...    .......+..++|+|+|++|++++
T Consensus       285 ~~~~~----~~~~~~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          285 RKLIK----AANLDHTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             TEEEE----EEECSSCCCEEEECSSSSCEEEES
T ss_pred             CeEEE----EEcCCCCccceEECCCCCEEEEec
Confidence            76533    222345678999999999888754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.46  E-value=2.8e-12  Score=136.19  Aligned_cols=216  Identities=12%  Similarity=0.073  Sum_probs=144.0

Q ss_pred             CCCCCCCeEE-----EEECCCCCEEEEEeC-CC--eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcE
Q 004785          103 LSPPPRSTIA-----AAFSPDGKTLASTHG-DH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV  174 (730)
Q Consensus       103 L~gH~~~Vt~-----lafSPDG~~LaSgS~-Dg--tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtV  174 (730)
                      +..|......     .+|||||++|++++. ++  .|.+||+.+++......++...+..+.|+| +++.|+.++.++.|
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l  104 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNL  104 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEE
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeE
Confidence            5556655555     889999999999987 66  489999999988777777776666789999 99999999999999


Q ss_pred             EEEECCCCeEEEEecCCC-CeEEEE--EcCCCCEEEEEE-----------------------CCeEEEEEcCCCccccCC
Q 004785          175 RLWNASTAECIGSRDFYR-PIASIA--FHASGELLAVAS-----------------------GHKLYIWRYNMREETSSP  228 (730)
Q Consensus       175 rLWDl~tg~~i~~l~h~~-~V~sVa--fSPdG~~LAsgS-----------------------dd~I~VWDl~t~~~~~~~  228 (730)
                      ++||+.+++....+.... .+....  ++|+|++|+...                       +..|++||+.+++..   
T Consensus       105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~---  181 (388)
T 3pe7_A          105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST---  181 (388)
T ss_dssp             EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE---
T ss_pred             EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE---
Confidence            999999998776655433 343333  489999887432                       134999999887542   


Q ss_pred             eEEecCCCCeEEEEEcc-CCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004785          229 RIVLRTRRSLRAVHFHP-HAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (730)
Q Consensus       229 ~~l~~h~~~V~sVaFSP-dG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil  307 (730)
                       .+..+...+..+.|+| ||+.|+.+.... -..                ....+.+.+........+.....  ...+.
T Consensus       182 -~l~~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~----------------~~~~l~~~d~~~~~~~~l~~~~~--~~~~~  241 (388)
T 3pe7_A          182 -VILQENQWLGHPIYRPYDDSTVAFCHEGP-HDL----------------VDARMWLINEDGTNMRKVKTHAE--GESCT  241 (388)
T ss_dssp             -EEEEESSCEEEEEEETTEEEEEEEEECSC-TTT----------------SSCSEEEEETTSCCCEESCCCCT--TEEEE
T ss_pred             -EeecCCccccccEECCCCCCEEEEEEecC-CCC----------------CcceEEEEeCCCCceEEeeeCCC--Ccccc
Confidence             3556677899999999 999887766410 000                01134444433322222221100  01234


Q ss_pred             eeeEecCCCEEEEEecCCCCC-cccceeecCCCcce
Q 004785          308 RPSFVRDDERISLQHTEHDSG-ATRTQQSLRSSSSV  342 (730)
Q Consensus       308 ~p~FSpDg~rI~~~~~~~dsg-s~~~~~~~~ss~~~  342 (730)
                      .+.|||||++|++........ ..++.+++.+...+
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             cceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence            689999999998754433221 13566666554433

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.45  E-value=1.6e-11  Score=129.84  Aligned_cols=175  Identities=11%  Similarity=0.117  Sum_probs=118.2

Q ss_pred             EecCCCEEEEEeCC----CeEEEEeCCC--CC------CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEE
Q 004785           77 GRDARRGLASWVEA----ESLHHLRPKY--CP------LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLK  143 (730)
Q Consensus        77 ~~d~g~~L~Sgs~D----gsIrlWd~~t--~~------L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~  143 (730)
                      ...+++.|++...+    +.|.+|++..  +.      +..+......+++  |+++|++++ .++.|.+|++.....+.
T Consensus        57 ~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~  134 (361)
T 3scy_A           57 PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALL  134 (361)
T ss_dssp             ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBC
T ss_pred             ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCc
Confidence            34466777777775    7899998654  32      2234556778888  888888776 47899999997543221


Q ss_pred             E----E--ec--------CCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECCCCe-------E-------EEEecCCCCe
Q 004785          144 V----L--HG--------HRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAE-------C-------IGSRDFYRPI  194 (730)
Q Consensus       144 ~----l--~g--------H~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~-------~-------i~~l~h~~~V  194 (730)
                      .    +  .+        +...+.+++|+| +++++ ++...++.|++|++....       .       .........+
T Consensus       135 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  213 (361)
T 3scy_A          135 PASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGP  213 (361)
T ss_dssp             SCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCE
T ss_pred             ccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCC
Confidence            1    1  11        122357899999 77755 455568899999887543       1       2223455678


Q ss_pred             EEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEE---ecCCCCeEEEEEccCCCeEEEEEe
Q 004785          195 ASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       195 ~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l---~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..++|+|||++|++++  ++.|++||+.+++... ....   ..+...+..++|+|||++++++..
T Consensus       214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          214 RHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             eEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence            8999999999988887  4559999998664311 1111   223355789999999998876653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.45  E-value=2.4e-11  Score=128.60  Aligned_cols=172  Identities=12%  Similarity=0.079  Sum_probs=118.1

Q ss_pred             CCCEEEEEe-CCCeEEEEeCCCC-CCC-----------------CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCC
Q 004785           80 ARRGLASWV-EAESLHHLRPKYC-PLS-----------------PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTG  139 (730)
Q Consensus        80 ~g~~L~Sgs-~DgsIrlWd~~t~-~L~-----------------gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg  139 (730)
                      +++.|+... .++.|.+|++... .+.                 .+...+.+++|+|||++|+++.. ++.|++|++...
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            445555554 6889999998642 211                 11234688999999997766654 889999988754


Q ss_pred             eE------E-------EEEecCCCCcEEEEEccCCCCEEEEEe-CCCcEEEEECCCCeEEEE--ec----CCCCeEEEEE
Q 004785          140 SC------L-------KVLHGHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGS--RD----FYRPIASIAF  199 (730)
Q Consensus       140 ~~------l-------~~l~gH~~~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~i~~--l~----h~~~V~sVaf  199 (730)
                      ..      +       .....+...+..++|+| ++++++.++ .++.|.+||+.+++....  +.    +......++|
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~  266 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHL  266 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEE
T ss_pred             CCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEE
Confidence            31      1       11223445678999999 787766665 689999999998765322  21    2345789999


Q ss_pred             cCCCCEEEEEEC---CeEEEEEcCC--CccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          200 HASGELLAVASG---HKLYIWRYNM--REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       200 SPdG~~LAsgSd---d~I~VWDl~t--~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +|||++|+++..   +.|.+|++..  ++... ...+.. ...+..++|+|||++|+++.
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~-~~~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTK-VGYQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTTCCEEE-EEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE-eeEecC-CCCCceEEECCCCCEEEEEE
Confidence            999999987764   3499999963  33211 112222 55788999999999888776

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.43  E-value=6.5e-12  Score=134.36  Aligned_cols=179  Identities=11%  Similarity=0.045  Sum_probs=123.0

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC-CCCCC---CCC--CCeEEEEECCCCCE--EEEEe-------------CCCeEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPK-YCPLS---PPP--RSTIAAAFSPDGKT--LASTH-------------GDHTVKI  133 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~-t~~L~---gH~--~~Vt~lafSPDG~~--LaSgS-------------~DgtVrV  133 (730)
                      ++...+++.|+++..+ .|.+|++. ++++.   .+.  +.+..++|+|||++  ++++.             .++++.+
T Consensus        45 ~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v  123 (365)
T 1jof_A           45 MTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV  123 (365)
T ss_dssp             EEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred             EEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEE
Confidence            3444567778888777 89999986 55321   111  23567899999994  45553             6899999


Q ss_pred             EECC-CCeEEEEEe----cCCCCcEEEEEccCCCCEEEEEe-CCCcEEEEECC-CCeEEE--Eec---CCCCeEEEEEcC
Q 004785          134 IDCQ-TGSCLKVLH----GHRRTPWVVRFHPLNPTIIASGS-LDHEVRLWNAS-TAECIG--SRD---FYRPIASIAFHA  201 (730)
Q Consensus       134 WDl~-tg~~l~~l~----gH~~~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~-tg~~i~--~l~---h~~~V~sVafSP  201 (730)
                      |++. +++....+.    .+...+..++|+| ++++++++. .++.|++||+. +++...  .+.   +...+..++|+|
T Consensus       124 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp  202 (365)
T 1jof_A          124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP  202 (365)
T ss_dssp             EEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT
T ss_pred             EccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC
Confidence            9997 466554443    2556799999999 788777665 46899999998 776532  232   356789999999


Q ss_pred             CCCEEEEEEC--CeEEEEEcCC--CccccCCeEEe-------cCCC------CeEEEE-EccCCCeEEEEEe
Q 004785          202 SGELLAVASG--HKLYIWRYNM--REETSSPRIVL-------RTRR------SLRAVH-FHPHAAPLLLTAE  255 (730)
Q Consensus       202 dG~~LAsgSd--d~I~VWDl~t--~~~~~~~~~l~-------~h~~------~V~sVa-FSPdG~~Llatgs  255 (730)
                      ||++|++++.  +.|.+|+++.  ++.......+.       ++..      .+..++ |+|||++|+++..
T Consensus       203 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          203 TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            9999988873  4599998763  33210000111       1122      588999 9999998876654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.40  E-value=7.2e-12  Score=143.76  Aligned_cols=234  Identities=10%  Similarity=0.036  Sum_probs=150.4

Q ss_pred             CCE-EEEE-eCCCeEEEEeCC--C-C---CCCC-----CCCCeEEEEECCCCCEEEEEeCC----------CeEEEEECC
Q 004785           81 RRG-LASW-VEAESLHHLRPK--Y-C---PLSP-----PPRSTIAAAFSPDGKTLASTHGD----------HTVKIIDCQ  137 (730)
Q Consensus        81 g~~-L~Sg-s~DgsIrlWd~~--t-~---~L~g-----H~~~Vt~lafSPDG~~LaSgS~D----------gtVrVWDl~  137 (730)
                      ++. |+.. ..+..|.+|+..  . +   ++..     |...+..++|||||+.|++++.|          ..|++||+.
T Consensus        90 g~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           90 GGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             SSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             CCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence            444 4433 335678888876  2 3   3555     66778999999999999999887          589999998


Q ss_pred             C------CeEEEEEe-cCCCCcEEEEEccCCCCEEEEEeCC--------CcEEEEECC-CC---eEEEEec-CCCCeEEE
Q 004785          138 T------GSCLKVLH-GHRRTPWVVRFHPLNPTIIASGSLD--------HEVRLWNAS-TA---ECIGSRD-FYRPIASI  197 (730)
Q Consensus       138 t------g~~l~~l~-gH~~~V~sVafSP~dg~lLaSgS~D--------gtVrLWDl~-tg---~~i~~l~-h~~~V~sV  197 (730)
                      +      ++ ...+. .+...+..++|+| +++.|+.++.+        .+|++||+. ++   +...... +...+..+
T Consensus       170 ~~~~~~~~~-~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~  247 (662)
T 3azo_A          170 GSAAADRSA-VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA  247 (662)
T ss_dssp             STTTTCGGG-SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred             CCccccCCc-eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence            8      55 44555 5566788899999 88888877754        379999999 57   4444444 46789999


Q ss_pred             EEcCCCCEEEEEEC-C--eEEEEEcCCCccccCCeEEecCCCC---------eEEEEEccCCCeEEEEEeeCCccCCCcc
Q 004785          198 AFHASGELLAVASG-H--KLYIWRYNMREETSSPRIVLRTRRS---------LRAVHFHPHAAPLLLTAEVNDLDSSESS  265 (730)
Q Consensus       198 afSPdG~~LAsgSd-d--~I~VWDl~t~~~~~~~~~l~~h~~~---------V~sVaFSPdG~~Llatgsvwdl~s~~~~  265 (730)
                      +|+|||++++++.. +  .|++||+.+++...    +..+...         +..++|+|+++.+++... ...      
T Consensus       248 ~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~----l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~------  316 (662)
T 3azo_A          248 EWAPDGSLIVATDRTGWWNLHRVDPATGAATQ----LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA------  316 (662)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECTTTCCEEE----SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC------
T ss_pred             EECCCCeEEEEECCCCCeEEEEEECCCCceee----cccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc------
Confidence            99999996666653 3  37777765554322    2222111         567889999885554432 110      


Q ss_pred             eeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeE-ecCCCEEEEEecCCCCCcccceeecCCCcceee
Q 004785          266 LTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSF-VRDDERISLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       266 ~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~F-SpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                                     .+...+...+....+ ..    .... ...+ ++|++.+++...+.+.+..++..++.+....+|
T Consensus       317 ---------------~l~~~d~~~~~~~~l-~~----~~~~-~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          317 ---------------VLGILDPESGELVDA-AG----PWTE-WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             ---------------EEEEEETTTTEEEEC-CS----SCCE-EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             ---------------EEEEEECCCCcEEEe-cC----CCCe-EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence                           111112111110000 00    0011 1233 778999998888888788888888877776666


Q ss_pred             eccc
Q 004785          345 LTYS  348 (730)
Q Consensus       345 ~~~~  348 (730)
                      +...
T Consensus       376 ~~~~  379 (662)
T 3azo_A          376 GARH  379 (662)
T ss_dssp             ESCC
T ss_pred             ecCC
Confidence            5444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.39  E-value=7.5e-12  Score=132.45  Aligned_cols=203  Identities=8%  Similarity=0.009  Sum_probs=133.1

Q ss_pred             CeEEEEeCCCCC---CCCCCCC-eEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE------------
Q 004785           91 ESLHHLRPKYCP---LSPPPRS-TIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV------------  154 (730)
Q Consensus        91 gsIrlWd~~t~~---L~gH~~~-Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s------------  154 (730)
                      ..|.+||..+++   +..+... ...+.|+|||++|+.++.++.|++||+.+++....+..+......            
T Consensus        60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence            367888887662   3333333 334889999999999999999999999998876666655442222            


Q ss_pred             -------EEEccCCCCEEEEE-----eCCCcEEEEECCCCeEEEEecCCCCeEEEEEcC-CCCEEEEEEC-------CeE
Q 004785          155 -------VRFHPLNPTIIASG-----SLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASG-------HKL  214 (730)
Q Consensus       155 -------VafSP~dg~lLaSg-----S~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSP-dG~~LAsgSd-------d~I  214 (730)
                             +.|+| +++.++..     ..+..|++||+.+++......+...+..+.|+| +|+.|+..++       ..|
T Consensus       140 ~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (396)
T 3c5m_A          140 VGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM  218 (396)
T ss_dssp             EEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred             ccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence                   24566 45544433     456789999999998877777778899999999 8887777663       248


Q ss_pred             EEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCC
Q 004785          215 YIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSH  292 (730)
Q Consensus       215 ~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~  292 (730)
                      ++||+..++..    .+..+  ...+..+.|+|||++|+..+......                  ...+.+++..++..
T Consensus       219 ~~~d~~~~~~~----~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~------------------~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          219 WLVNEDGSNVR----KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQT------------------DRVIYKANPETLEN  276 (396)
T ss_dssp             EEEETTSCCCE----ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTC------------------CEEEEEECTTTCCE
T ss_pred             EEEECCCCcee----EeeccCCCccccceEECCCCCEEEEEecCCCCc------------------cceEEEEECCCCCe
Confidence            88888665422    22222  23578899999999888775432100                  01255555444332


Q ss_pred             CCcccccCCCCCCceeeeEec-CCCEEEEEe
Q 004785          293 PGLAEEVPLITPPFLRPSFVR-DDERISLQH  322 (730)
Q Consensus       293 ~~L~~~~~~~slpil~p~FSp-Dg~rI~~~~  322 (730)
                      ..+...      +...+.|++ ||+.+++..
T Consensus       277 ~~l~~~------~~~~~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          277 EEVMVM------PPCSHLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EEEEEC------CSEEEEEECSSSSEEEEEE
T ss_pred             EEeeeC------CCCCCCccCCCCceEEEec
Confidence            222211      112288999 999777643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.38  E-value=3e-12  Score=145.22  Aligned_cols=165  Identities=9%  Similarity=0.003  Sum_probs=124.5

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCeEEEEEecCCC
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~D----gtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      .+++..++....++.+.+||+.+++   +..+..  .+++|||||++|++++.|    ..|++||+.+++.. .+..|.+
T Consensus       119 ~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~  195 (582)
T 3o4h_A          119 DTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEG  195 (582)
T ss_dssp             ECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSC
T ss_pred             CCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCC
Confidence            3444444444444555599998763   333333  789999999999988877    78999999988754 6788988


Q ss_pred             CcEEEEEccCCCCEEEEEeCCC--cEEEEECCCCeEEEEecCCCCeEEEE--------EcCCCCEEEEEE-CCeEEEEEc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGSRDFYRPIASIA--------FHASGELLAVAS-GHKLYIWRY  219 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVa--------fSPdG~~LAsgS-dd~I~VWDl  219 (730)
                      .+..++|+| ++++|+++..|+  .|++||+.+++......+...+..++        |+|||.++++++ ++.++||++
T Consensus       196 ~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          196 SFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            899999999 888888888888  89999999988873334555666666        999998888887 556999999


Q ss_pred             CCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          220 NMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       220 ~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                        ++...      .....|.+++|+ +|+.+++.+.
T Consensus       275 --g~~~~------~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          275 --GERVE------APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             --TEEEC------CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             --CCeec------cCCCceEEEEec-CCEEEEEEcC
Confidence              44321      234678899999 8886665443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.38  E-value=2.7e-11  Score=129.60  Aligned_cols=145  Identities=14%  Similarity=0.077  Sum_probs=106.0

Q ss_pred             CCCeEEEEECCCCCEEEEEeCCCeEEEEECC-CCeEEEEEecC-CCCcEEEEEccCCCC--EEEEEe-------------
Q 004785          107 PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ-TGSCLKVLHGH-RRTPWVVRFHPLNPT--IIASGS-------------  169 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~-tg~~l~~l~gH-~~~V~sVafSP~dg~--lLaSgS-------------  169 (730)
                      ...+..++|+|||++|++++.+ .|.+||+. +++........ .+.+..++|+| +++  ++++++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeec
Confidence            3467899999999999999888 99999997 78765443311 13366799999 777  345553             


Q ss_pred             CCCcEEEEECC-CCeEEEEec-----CCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC-CCccccCCeEEe--cCCCCe
Q 004785          170 LDHEVRLWNAS-TAECIGSRD-----FYRPIASIAFHASGELLAVAS--GHKLYIWRYN-MREETSSPRIVL--RTRRSL  238 (730)
Q Consensus       170 ~DgtVrLWDl~-tg~~i~~l~-----h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~-t~~~~~~~~~l~--~h~~~V  238 (730)
                      .++++.+|++. +++....+.     +...+.+++|+|||++|+++.  ++.|++||+. +++... ...+.  .+...+
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~~g~~p  195 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVDAPDPGDHP  195 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEECSSTTCCE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEecCCCCCCC
Confidence            68999999997 466543332     456799999999999988876  3569999998 554321 11122  235679


Q ss_pred             EEEEEccCCCeEEEEE
Q 004785          239 RAVHFHPHAAPLLLTA  254 (730)
Q Consensus       239 ~sVaFSPdG~~Llatg  254 (730)
                      +.++|+|||++++++.
T Consensus       196 ~~~~~spdg~~l~v~~  211 (365)
T 1jof_A          196 RWVAMHPTGNYLYALM  211 (365)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             CEeEECCCCCEEEEEE
Confidence            9999999999887665

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.35  E-value=2.5e-11  Score=139.27  Aligned_cols=165  Identities=13%  Similarity=0.075  Sum_probs=117.9

Q ss_pred             eCCCeEEEEeCC-CC---CCCCCCCCeE---------EEEEC--CCCCE-EEEEeC-CCeEEEEECC--C-CeEEEEEec
Q 004785           88 VEAESLHHLRPK-YC---PLSPPPRSTI---------AAAFS--PDGKT-LASTHG-DHTVKIIDCQ--T-GSCLKVLHG  147 (730)
Q Consensus        88 s~DgsIrlWd~~-t~---~L~gH~~~Vt---------~lafS--PDG~~-LaSgS~-DgtVrVWDl~--t-g~~l~~l~g  147 (730)
                      ..++...+|... .+   ++..|...+.         ...|+  |||++ |+.++. +..|++|++.  . ++ ...+..
T Consensus        44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~  122 (662)
T 3azo_A           44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTP  122 (662)
T ss_dssp             TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSC
T ss_pred             ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccC
Confidence            346778888743 22   4666766666         66665  99998 777655 5677777775  3 43 455655


Q ss_pred             -----CCCCcEEEEEccCCCCEEEEEeCC----------CcEEEEECCC------CeEEEEe-cCCCCeEEEEEcCCCCE
Q 004785          148 -----HRRTPWVVRFHPLNPTIIASGSLD----------HEVRLWNAST------AECIGSR-DFYRPIASIAFHASGEL  205 (730)
Q Consensus       148 -----H~~~V~sVafSP~dg~lLaSgS~D----------gtVrLWDl~t------g~~i~~l-~h~~~V~sVafSPdG~~  205 (730)
                           |...+..++|+| +++.|++++.|          .+|++||+.+      ++..... .+...+..++|||||++
T Consensus       123 ~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~  201 (662)
T 3azo_A          123 VSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQ  201 (662)
T ss_dssp             CCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSE
T ss_pred             CccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCE
Confidence                 667788999999 88888888776          5899999998      6665555 55667888999999999


Q ss_pred             EEEEE-CC--------eEEEEEcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          206 LAVAS-GH--------KLYIWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       206 LAsgS-dd--------~I~VWDl~-t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |+.++ ++        .|++||+. ++...........+...+..+.|+|||+ ++++++
T Consensus       202 la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~  260 (662)
T 3azo_A          202 AVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATD  260 (662)
T ss_dssp             EEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEEC
T ss_pred             EEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEEC
Confidence            98776 32        39999998 4521111123344578899999999999 555543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.32  E-value=2.7e-10  Score=132.97  Aligned_cols=237  Identities=10%  Similarity=0.001  Sum_probs=152.4

Q ss_pred             EecCCCEEEEEeCCC-----eEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCe----------------EE
Q 004785           77 GRDARRGLASWVEAE-----SLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHT----------------VK  132 (730)
Q Consensus        77 ~~d~g~~L~Sgs~Dg-----sIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~Dgt----------------Vr  132 (730)
                      .+.+++.|+....++     .|++||+.+++..   .....+..++|+|||+.|+.++.++.                |+
T Consensus       132 ~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~  211 (710)
T 2xdw_A          132 FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY  211 (710)
T ss_dssp             ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred             ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence            344556666444332     8999999887422   11223678999999999999988766                99


Q ss_pred             EEECCCCeE--EEEEec--CCCCcEEEEEccCCCCEEEEEeC-----CCcEEEEECCC------C--eEEEEecCCCCeE
Q 004785          133 IIDCQTGSC--LKVLHG--HRRTPWVVRFHPLNPTIIASGSL-----DHEVRLWNAST------A--ECIGSRDFYRPIA  195 (730)
Q Consensus       133 VWDl~tg~~--l~~l~g--H~~~V~sVafSP~dg~lLaSgS~-----DgtVrLWDl~t------g--~~i~~l~h~~~V~  195 (730)
                      +|++.++..  ...+..  |...+..+.|+| ++++|+..+.     +..|++||+.+      +  +......+...+.
T Consensus       212 ~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~  290 (710)
T 2xdw_A          212 YHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY  290 (710)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE
T ss_pred             EEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE
Confidence            999988762  233333  455678999999 7777766554     67899999986      5  3344444555555


Q ss_pred             EEEEcCCCCEEEEEEC-C----eEEEEEcCCCccccCCeEEecCCC--CeEEEEEccCCCeEEEEEeeCCccCCCcceeE
Q 004785          196 SIAFHASGELLAVASG-H----KLYIWRYNMREETSSPRIVLRTRR--SLRAVHFHPHAAPLLLTAEVNDLDSSESSLTL  268 (730)
Q Consensus       196 sVafSPdG~~LAsgSd-d----~I~VWDl~t~~~~~~~~~l~~h~~--~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l  268 (730)
                      . .|+|+|+.|+..++ +    +|.+||+.++.... ...+..+..  .+..+.|++++. ++++.......        
T Consensus       291 ~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~--------  359 (710)
T 2xdw_A          291 D-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKN--------  359 (710)
T ss_dssp             E-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEE--------
T ss_pred             E-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccc-ceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEE--------
Confidence            4 58999998887763 2    39999998764211 234555543  688899986555 55554322111        


Q ss_pred             eccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCc
Q 004785          269 ATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSS  340 (730)
Q Consensus       269 ~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~  340 (730)
                                  .+.+++...+........   ....+..+++++|++.+++...+...+.+++..++.+..
T Consensus       360 ------------~l~~~~~~~g~~~~~l~~---~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 ------------TLQLHDLATGALLKIFPL---EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ------------EEEEEETTTCCEEEEECC---CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ------------EEEEEECCCCCEEEecCC---CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                        222333211111111111   011233578889999999999999999999999987665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.29  E-value=9.4e-10  Score=116.16  Aligned_cols=159  Identities=14%  Similarity=0.155  Sum_probs=115.0

Q ss_pred             CeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEE---------ecCCCCcEEE
Q 004785           91 ESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVL---------HGHRRTPWVV  155 (730)
Q Consensus        91 gsIrlWd~~t~~L-----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l---------~gH~~~V~sV  155 (730)
                      ++|.+||..++++     .++......++++++|+++++...++.|++||..... .+..+         .++...+..|
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            4799999987643     2455678999999999988888889999999975442 45555         3445578899


Q ss_pred             EEccCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCC-----------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785          156 RFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFY-----------RPIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (730)
Q Consensus       156 afSP~dg~lLaSgS-~DgtVrLWDl~tg~~i~~l~h~-----------~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t  221 (730)
                      +|+|++++++++.+ .++.|++|| .+++.+..+...           .....++++|++..|+++.  +++|++||..+
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC
Confidence            99996788888886 699999999 567777665421           2378999999954444444  45599999987


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      ++... ......+...+..++|+| +..+..
T Consensus       228 G~~~~-~~~~~~~~~~~~~~~~~p-g~~~~~  256 (329)
T 3fvz_A          228 KEFVR-EIKHASFGRNVFAISYIP-GFLFAV  256 (329)
T ss_dssp             CCEEE-EECCTTTTTCEEEEEEET-TEEEEE
T ss_pred             CcEEE-EEeccccCCCcceeeecC-CEEEEe
Confidence            76533 111124566789999999 543333

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.27  E-value=2.6e-10  Score=132.97  Aligned_cols=240  Identities=10%  Similarity=-0.025  Sum_probs=152.0

Q ss_pred             EecCCCEEE-----EEeCCCeEEEEeCCCCCCC--CCCCCe--EEEEECCCCCEEEEEeCCCe-------------EEEE
Q 004785           77 GRDARRGLA-----SWVEAESLHHLRPKYCPLS--PPPRST--IAAAFSPDGKTLASTHGDHT-------------VKII  134 (730)
Q Consensus        77 ~~d~g~~L~-----Sgs~DgsIrlWd~~t~~L~--gH~~~V--t~lafSPDG~~LaSgS~Dgt-------------VrVW  134 (730)
                      .+.+++.|+     .|+++..|++||+.++.+.  .+...+  ..++|+|||+.|+.++.|..             |++|
T Consensus       128 ~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~  207 (695)
T 2bkl_A          128 VSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH  207 (695)
T ss_dssp             ECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred             ECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence            344556665     3344568999999988543  233333  78999999999999998776             9999


Q ss_pred             ECCCCe----EEEEEecCCCCcEEEEEccCCCCEEEEEeCCC----cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEE
Q 004785          135 DCQTGS----CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELL  206 (730)
Q Consensus       135 Dl~tg~----~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg----tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~L  206 (730)
                      ++.++.    .+.....|...+..+.|+| ++++++..+.++    .|++||..+++......+...+....| ++|+ |
T Consensus       208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l  284 (695)
T 2bkl_A          208 TLGTEPSKDTVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-F  284 (695)
T ss_dssp             ETTSCGGGCEEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-E
T ss_pred             ECCCCchhceEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-E
Confidence            998876    2333344556788999999 777777666555    788888777766666666666667767 6677 5


Q ss_pred             EEEEC-----CeEEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCC
Q 004785          207 AVASG-----HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP  279 (730)
Q Consensus       207 AsgSd-----d~I~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~  279 (730)
                      +..++     .+|++||+.+++... ...+..+  ...+..++|+ ++ .++++...+...                   
T Consensus       285 ~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~-------------------  342 (695)
T 2bkl_A          285 YVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATS-------------------  342 (695)
T ss_dssp             EEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEE-------------------
T ss_pred             EEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEE-------------------
Confidence            55553     349999997765311 2234443  4567888888 44 455554322111                   


Q ss_pred             CeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeee
Q 004785          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLL  345 (730)
Q Consensus       280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~  345 (730)
                       .+.+.+.. +........ + ....+..+.+++|++.+++...+...+.+++.+++.+.....|.
T Consensus       343 -~l~~~~~~-g~~~~~l~~-~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          343 -EVRVATLK-GKPVRTVQL-P-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             -EEEEEETT-CCEEEECCC-S-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             -EEEEEeCC-CCeeEEecC-C-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence             11111110 000000000 0 00112256788999999998888888899999998877655554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.20  E-value=9.4e-11  Score=123.96  Aligned_cols=209  Identities=9%  Similarity=0.019  Sum_probs=129.1

Q ss_pred             CCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785          108 RSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~  184 (730)
                      ..+..++|||||++|+....+   ..|++||+.+++......++......+.|+| +++.|+.++.++.|++||+.+++.
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~~  114 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLEE  114 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCCE
T ss_pred             eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCCc
Confidence            347788999999998887653   4789999998876544443333334488999 899999999999999999999887


Q ss_pred             EEEecC-CCCeEE-------------------EEEcCCCCEEEEEE------CCeEEEEEcCCCccccCCeEEecCCCCe
Q 004785          185 IGSRDF-YRPIAS-------------------IAFHASGELLAVAS------GHKLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       185 i~~l~h-~~~V~s-------------------VafSPdG~~LAsgS------dd~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      ...... ......                   +.|+|+|+.++...      +..|++||+.+++..    .+..+...+
T Consensus       115 ~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~~~~~~~  190 (396)
T 3c5m_A          115 QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE----VIHQDTAWL  190 (396)
T ss_dssp             EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE----EEEEESSCE
T ss_pred             EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE----eeccCCccc
Confidence            665542 222222                   35678887666542      234999999887642    244567789


Q ss_pred             EEEEEcc-CCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCE
Q 004785          239 RAVHFHP-HAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDER  317 (730)
Q Consensus       239 ~sVaFSP-dG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~r  317 (730)
                      ..+.|+| +|+.++.... .....                ....+.+++........+...  .....+..+.|+|||++
T Consensus       191 ~~~~~sp~dg~~l~~~~~-~~~~~----------------~~~~l~~~d~~~~~~~~l~~~--~~~~~~~~~~~spdg~~  251 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHE-GPHDL----------------VDARMWLVNEDGSNVRKIKEH--AEGESCTHEFWIPDGSA  251 (396)
T ss_dssp             EEEEEETTEEEEEEEEEC-SCSSS----------------CSCCCEEEETTSCCCEESSCC--CTTEEEEEEEECTTSSC
T ss_pred             ccceECCCCCCEEEEEec-CCCCC----------------CCceEEEEECCCCceeEeecc--CCCccccceEECCCCCE
Confidence            9999999 7887776653 11000                001334444332221111110  00112336899999999


Q ss_pred             EEEEecCCCC-CcccceeecCCCc
Q 004785          318 ISLQHTEHDS-GATRTQQSLRSSS  340 (730)
Q Consensus       318 I~~~~~~~ds-gs~~~~~~~~ss~  340 (730)
                      |++....... ...++.+++.+..
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~  275 (396)
T 3c5m_A          252 MAYVSYFKGQTDRVIYKANPETLE  275 (396)
T ss_dssp             EEEEEEETTTCCEEEEEECTTTCC
T ss_pred             EEEEecCCCCccceEEEEECCCCC
Confidence            8885443221 1125555554433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.19  E-value=9.4e-09  Score=107.09  Aligned_cols=174  Identities=9%  Similarity=-0.007  Sum_probs=121.6

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCeEEEEEe--cC
Q 004785           79 DARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLH--GH  148 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~D----gtVrVWDl~tg~~l~~l~--gH  148 (730)
                      ..+..+++...++.|.+||.+++++.    .+...+.+++|+++|+++++...+    +.|.+||..+++....+.  .+
T Consensus        54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  133 (333)
T 2dg1_A           54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST  133 (333)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc
Confidence            34555557778899999998876422    456789999999999988877666    689999998877554443  24


Q ss_pred             CCCcEEEEEccCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC
Q 004785          149 RRTPWVVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN  220 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~  220 (730)
                      ...+..++++| +++++++...      .+.|..||..+++..........+..++|+|+|++|+++.  ++.|++||+.
T Consensus       134 ~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          134 AYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             CCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            45789999999 7888877654      3567777776665544444445678999999999777665  4569999996


Q ss_pred             CC-ccccCC--eEEe--cCCCCeEEEEEccCCCeEEEE
Q 004785          221 MR-EETSSP--RIVL--RTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       221 t~-~~~~~~--~~l~--~h~~~V~sVaFSPdG~~Llat  253 (730)
                      +. ......  ....  .....+..++++++|+.++++
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             CCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEE
Confidence            42 221100  0111  111467889999999866554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.17  E-value=2.9e-09  Score=109.68  Aligned_cols=172  Identities=13%  Similarity=0.043  Sum_probs=121.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~~~V~  153 (730)
                      ++..+++...++.|..|+..++  .+..+...+.+++|+++|+++++...++.|.+||..+++........    ...+.
T Consensus        39 g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  118 (296)
T 3e5z_A           39 RSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN  118 (296)
T ss_dssp             GTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC
Confidence            3336778888899999998765  23456678999999999998887777889999999888765443321    23467


Q ss_pred             EEEEccCCCCEEEEEe-----------------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEE
Q 004785          154 VVRFHPLNPTIIASGS-----------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLY  215 (730)
Q Consensus       154 sVafSP~dg~lLaSgS-----------------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~  215 (730)
                      .++++| +++++++.+                 ..+.|..+|.. ++...........+.++|+|+|+.|++.+ ++.|+
T Consensus       119 ~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~  196 (296)
T 3e5z_A          119 DVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATH  196 (296)
T ss_dssp             CEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEE
Confidence            899999 888888732                 13456666665 55555555667789999999999984444 35699


Q ss_pred             EEEcC-CCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          216 IWRYN-MREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       216 VWDl~-t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      +||+. .+........+..+...+..++++++|+.++++
T Consensus       197 ~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  235 (296)
T 3e5z_A          197 RYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA  235 (296)
T ss_dssp             EEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred             EEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence            99997 333201011222345567789999999865554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.13  E-value=4e-09  Score=110.19  Aligned_cols=153  Identities=15%  Similarity=0.175  Sum_probs=105.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEEEEEeCC---C--eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004785           90 AESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGD---H--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (730)
Q Consensus        90 DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~LaSgS~D---g--tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~l  164 (730)
                      +..|.+|+..++....- ..+..+.|||||++|+..+.+   +  .|++||+.+++.......+ . +..++|+| +++.
T Consensus        42 ~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~  117 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRK  117 (347)
T ss_dssp             EEEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSE
T ss_pred             cceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCE
Confidence            56688889876632111 568899999999999988764   2  4888899888766555444 3 99999999 7777


Q ss_pred             EEEEeC---------------------------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 004785          165 IASGSL---------------------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-----  212 (730)
Q Consensus       165 LaSgS~---------------------------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-----  212 (730)
                      |+.++.                           ...|++||+.+++.+..+... .+..+.|+||| +++++..+     
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~  195 (347)
T 2gop_A          118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQ  195 (347)
T ss_dssp             EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred             EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEeccccccc
Confidence            777653                           257999999998873333224 78899999999 77777531     


Q ss_pred             ---eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          213 ---KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       213 ---~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                         ...||.+++++. .   .+..+ ..+..+  +|||++++..+.
T Consensus       196 ~~~~~~l~~~d~~~~-~---~l~~~-~~~~~~--spdg~~l~~~~~  234 (347)
T 2gop_A          196 YFKFWDIYIWEDGKE-E---KMFEK-VSFYAV--DSDGERILLYGK  234 (347)
T ss_dssp             SSCCEEEEEEETTEE-E---EEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred             ccccccEEEeCCCce-E---EeccC-cceeeE--CCCCCEEEEEEc
Confidence               334444443332 1   23334 445444  999998887764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.11  E-value=1.8e-09  Score=116.38  Aligned_cols=96  Identities=10%  Similarity=0.095  Sum_probs=74.1

Q ss_pred             CCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeC----------CCeEEEEECCCCeEEEEEecC------
Q 004785           89 EAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHG----------DHTVKIIDCQTGSCLKVLHGH------  148 (730)
Q Consensus        89 ~DgsIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS~----------DgtVrVWDl~tg~~l~~l~gH------  148 (730)
                      .|+.|.+||..++++    ..+..+  .++|+|||++|+++..          +++|.+||+.+++.+..+...      
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            367899999877643    233333  8999999999999863          678999999999988887643      


Q ss_pred             CCCcEEEEEccCCCCEEEEEeC--CCcEEEEECCCCeEEEE
Q 004785          149 RRTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGS  187 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~i~~  187 (730)
                      ......++|+| ++++++++..  +++|.+||+.+++.+..
T Consensus       107 g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A          107 LNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             CCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            34577899999 8888887763  68899999988766554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.11  E-value=1.4e-08  Score=107.46  Aligned_cols=172  Identities=9%  Similarity=0.010  Sum_probs=126.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-----C
Q 004785           79 DARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-----R  150 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-----~  150 (730)
                      ++++..++...++.|.+||..++++.   ........++++++++.+++...++.|.+||..+++....+....     .
T Consensus        52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~  131 (328)
T 3dsm_A           52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESG  131 (328)
T ss_dssp             ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCC
Confidence            34555555566789999999887532   234678899999998544444479999999999999887776433     1


Q ss_pred             CcEEEEEccCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-----------CeEEEEE
Q 004785          151 TPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-----------HKLYIWR  218 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-----------d~I~VWD  218 (730)
                      ....+++ . ++.++++.. .+++|.+||+.+++.+..+........++++|+|+++++...           +.|.+||
T Consensus       132 ~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id  209 (328)
T 3dsm_A          132 STEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRID  209 (328)
T ss_dssp             BCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred             CcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence            4567788 4 666666654 589999999999998888776666788999999997766654           3599999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ..+++...  ............++|+||++++.++.
T Consensus       210 ~~t~~v~~--~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          210 AETFTVEK--QFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             TTTTEEEE--EEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             CCCCeEEE--EEecCCCCCceeEEEecCCCEEEEEc
Confidence            98876533  11122234789999999999877653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.09  E-value=1.3e-09  Score=119.78  Aligned_cols=170  Identities=11%  Similarity=0.030  Sum_probs=126.4

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT  138 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~--------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t  138 (730)
                      .+.+....++.+++++.++ +.+|+.+.-              ....+.. |+.++|  |+++|+++ .++.|++||+.+
T Consensus        41 nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s  115 (388)
T 1xip_A           41 QNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE  115 (388)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS
T ss_pred             cEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh
Confidence            3445556777888888874 555875311              1234566 999999  99999999 889999999988


Q ss_pred             CeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004785          139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIW  217 (730)
Q Consensus       139 g~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VW  217 (730)
                      ......+..|...+..+.+.+ .  .++.++.||+|.+||+.++....   +...|.+++|||+|  ++.|. ++++++|
T Consensus       116 l~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~  187 (388)
T 1xip_A          116 LSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSF  187 (388)
T ss_dssp             TTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred             hhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence            776667777888898888776 2  28888999999999999887654   34589999999999  45555 6669999


Q ss_pred             EcCCCcc--cc---CCeEEe---cCCCCeEEEEEccCCCeEEEEEe
Q 004785          218 RYNMREE--TS---SPRIVL---RTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       218 Dl~t~~~--~~---~~~~l~---~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +......  ..   .+..+.   +|...|.+|.|.+++.++++=..
T Consensus       188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~  233 (388)
T 1xip_A          188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN  233 (388)
T ss_dssp             EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred             cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence            8877652  11   010112   36788999999999997765443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.09  E-value=8.5e-09  Score=107.67  Aligned_cols=158  Identities=11%  Similarity=0.119  Sum_probs=104.6

Q ss_pred             cCCCEEEEEeCC---C--eEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC----------------------
Q 004785           79 DARRGLASWVEA---E--SLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD----------------------  128 (730)
Q Consensus        79 d~g~~L~Sgs~D---g--sIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~D----------------------  128 (730)
                      .+++.|+....+   +  .|.+|++.+++   +..+.. +..+.|+|||+.|+.++.+                      
T Consensus        68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~  146 (347)
T 2gop_A           68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF  146 (347)
T ss_dssp             TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred             CCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence            455566655433   3  37777877652   333344 9999999999999888743                      


Q ss_pred             -----CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC---------cEEEEECCCCeEEEEecCCCCe
Q 004785          129 -----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH---------EVRLWNASTAECIGSRDFYRPI  194 (730)
Q Consensus       129 -----gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg---------tVrLWDl~tg~~i~~l~h~~~V  194 (730)
                           ..|++||+.+++.+..+.. . .+..+.|+| ++ +++++..+.         .|.++|  +++......+ ..+
T Consensus       147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~  219 (347)
T 2gop_A          147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSF  219 (347)
T ss_dssp             ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESE
T ss_pred             ccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC--CCceEEeccC-cce
Confidence                 5799999999987555655 3 788999999 77 877776542         355555  6665554444 445


Q ss_pred             EEEEEcCCCCEEEEEEC-C--------eEEEEEcCCCccccCCeEEecCCCCeEE-EEEccCCCeEEEE
Q 004785          195 ASIAFHASGELLAVASG-H--------KLYIWRYNMREETSSPRIVLRTRRSLRA-VHFHPHAAPLLLT  253 (730)
Q Consensus       195 ~sVafSPdG~~LAsgSd-d--------~I~VWDl~t~~~~~~~~~l~~h~~~V~s-VaFSPdG~~Llat  253 (730)
                      ..+  +|||++|+.++. +        .|++||  +++...   ....+...+.. +.|+ || .++++
T Consensus       220 ~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~---l~~~~~~~~~~~~~~s-dg-~~~~~  279 (347)
T 2gop_A          220 YAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG---ILDEVDRGVGQAKIKD-GK-VYFTL  279 (347)
T ss_dssp             EEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE---SSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred             eeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe---ccccCCcccCCccEEc-Cc-EEEEE
Confidence            444  999998887762 2        378887  333211   22345667886 8999 88 44443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.08  E-value=3e-09  Score=114.60  Aligned_cols=170  Identities=10%  Similarity=0.097  Sum_probs=122.3

Q ss_pred             EEEEecCCCEEEEEe----------CCCeEEEEeCCCCCCC----C------CCCCeEEEEECCCCCEEEEEeC--CCeE
Q 004785           74 FEAGRDARRGLASWV----------EAESLHHLRPKYCPLS----P------PPRSTIAAAFSPDGKTLASTHG--DHTV  131 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs----------~DgsIrlWd~~t~~L~----g------H~~~Vt~lafSPDG~~LaSgS~--DgtV  131 (730)
                      -++...+++.++...          .+++|.+||..+.+..    .      +......++|+|||++|+++..  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            445556777777765          3667999998765321    1      2245678999999999998864  5789


Q ss_pred             EEEECCCCeEEEE-EecC-------------------------------CCCcE--------------------------
Q 004785          132 KIIDCQTGSCLKV-LHGH-------------------------------RRTPW--------------------------  153 (730)
Q Consensus       132 rVWDl~tg~~l~~-l~gH-------------------------------~~~V~--------------------------  153 (730)
                      .+||+.+++.+.. +...                               .+.+.                          
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK  213 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence            9999988776655 2100                               00000                          


Q ss_pred             --------------------------------------------EEEEccCCCCEEEEEeC-----------CCcEEEEE
Q 004785          154 --------------------------------------------VVRFHPLNPTIIASGSL-----------DHEVRLWN  178 (730)
Q Consensus       154 --------------------------------------------sVafSP~dg~lLaSgS~-----------DgtVrLWD  178 (730)
                                                                  .++|+| +++.++.+..           +++|.+||
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD  292 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMD  292 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEE
Confidence                                                        156777 4444444322           34799999


Q ss_pred             CCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCC--ccccCCeEEecCCCCeEEEEEccCCC
Q 004785          179 ASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMR--EETSSPRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       179 l~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~--~~~~~~~~l~~h~~~V~sVaFSPdG~  248 (730)
                      +.+++.+..+.... +.+++|+|||++|++++++.|.|||..++  +.+.   .+..+....+.+.|+|+|+
T Consensus       293 ~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~---~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          293 TKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLR---TIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             TTTTEEEEEEECTT-CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEE---EETTSCSSEEEEEECCCSC
T ss_pred             CCCCcEEEEEecCC-eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeE---EeccCCCCcEEEEecCCCC
Confidence            99999998887556 99999999999999888866999999998  6543   3446677889999999996

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.08  E-value=9e-09  Score=120.14  Aligned_cols=146  Identities=9%  Similarity=0.032  Sum_probs=107.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc------
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDH-----TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE------  173 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~Dg-----tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt------  173 (730)
                      +|...+..++|||||++||.++.++     .|++||+.+++.+.....+. .+..++|+| +++.|+.++.|+.      
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTH-DGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECT-TSSEEEEEECCCCSSCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEe-CCCEEEEEEECCccccccc
Confidence            3445688999999999999876643     89999999998775433222 367899999 8888888887766      


Q ss_pred             ----------EEEEECCCCeE--EEEec---CCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCC------Ccccc
Q 004785          174 ----------VRLWNASTAEC--IGSRD---FYRPIASIAFHASGELLAVASG------HKLYIWRYNM------REETS  226 (730)
Q Consensus       174 ----------VrLWDl~tg~~--i~~l~---h~~~V~sVafSPdG~~LAsgSd------d~I~VWDl~t------~~~~~  226 (730)
                                |++|++.+++.  ...+.   +...+..+.|+|||++|+..+.      ..|++||+.+      +..  
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--  277 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--  277 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC--
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc--
Confidence                      99999988762  22222   3456789999999999887762      2499999976      421  


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ....+..+...+.. .|+++|+.++..++
T Consensus       278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred             ceEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence            13345566666655 48999998887764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.07  E-value=2.9e-08  Score=101.22  Aligned_cols=167  Identities=13%  Similarity=0.114  Sum_probs=120.2

Q ss_pred             cCCCEEEEEeC--CCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--cCCC
Q 004785           79 DARRGLASWVE--AESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRR  150 (730)
Q Consensus        79 d~g~~L~Sgs~--DgsIrlWd~~t~~---L-~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH~~  150 (730)
                      +.+..|+....  ++.|.+||.....   + ..+...+.+++++++|+++++...++.|++||. +++.+..+.  .+..
T Consensus        86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  164 (286)
T 1q7f_A           86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLE  164 (286)
T ss_dssp             TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCS
T ss_pred             cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccC
Confidence            34445555543  7899999954331   2 234567899999999998888778899999995 466666664  4555


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---CCeEEEEEcCCCCEEEEEEC-C-eEEEEEcCCCccc
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASG-H-KLYIWRYNMREET  225 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---~~V~sVafSPdG~~LAsgSd-d-~I~VWDl~t~~~~  225 (730)
                      .+..+++++ +++++++...++.|++||.. ++.+..+...   ..+..++++++|+++++... + .|++||.. ++..
T Consensus       165 ~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~  241 (286)
T 1q7f_A          165 FPNGVVVND-KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI  241 (286)
T ss_dssp             SEEEEEECS-SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE
T ss_pred             CcEEEEECC-CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE
Confidence            689999999 88888888889999999984 5555555432   57899999999998877764 3 79999964 3332


Q ss_pred             cCCeEEecC--CCCeEEEEEccCCCeEEE
Q 004785          226 SSPRIVLRT--RRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       226 ~~~~~l~~h--~~~V~sVaFSPdG~~Lla  252 (730)
                      .   .+..+  ...+..++|+|+|+.+++
T Consensus       242 ~---~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          242 S---ALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             E---EEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             E---EEcccCCCCcceeEEECCCCcEEEE
Confidence            2   22222  234789999999984444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.06  E-value=6.6e-09  Score=109.64  Aligned_cols=174  Identities=13%  Similarity=0.159  Sum_probs=128.8

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC--CC------------CCCCCCeEEEEECC-CCCEEEEEe-CCCeEEEEECCC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC--PL------------SPPPRSTIAAAFSP-DGKTLASTH-GDHTVKIIDCQT  138 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~--~L------------~gH~~~Vt~lafSP-DG~~LaSgS-~DgtVrVWDl~t  138 (730)
                      ++....+..+++...++.|++|+....  .+            .++......++|+| +|.++++.+ .++.|++|| .+
T Consensus        96 ia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A           96 LSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             EEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            444445667777778899999998654  11            34555789999999 788888876 689999999 67


Q ss_pred             CeEEEEEecC----------CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCE
Q 004785          139 GSCLKVLHGH----------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGEL  205 (730)
Q Consensus       139 g~~l~~l~gH----------~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~  205 (730)
                      |+.+..+...          ...+..|+++|++++++++...++.|++||..+++.+..+.   +...+..++|+| |..
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~  253 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFL  253 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEE
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEE
Confidence            8877777432          23488999999448888888899999999999898888764   556789999999 433


Q ss_pred             EEEEE--------CCeEEEEEcCCCccccCCeEE---ecCCCCeEEEEEccCCCeEEEEE
Q 004785          206 LAVAS--------GHKLYIWRYNMREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       206 LAsgS--------dd~I~VWDl~t~~~~~~~~~l---~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ++..+        +..|++||+.+++.+.   .+   ..+...+..|+|+|+|. ++++.
T Consensus       254 ~~~~g~~~v~~~~~~~v~~~~~~~g~~~~---~~~~~~~~~~~p~~ia~~~dG~-lyvad  309 (329)
T 3fvz_A          254 FAVNGKPYFGDQEPVQGFVMNFSSGEIID---VFKPVRKHFDMPHDIVASEDGT-VYIGD  309 (329)
T ss_dssp             EEEECCCCTTCSCCCCEEEEETTTCCEEE---EECCSSSCCSSEEEEEECTTSE-EEEEE
T ss_pred             EEeCCCEEeccCCCcEEEEEEcCCCeEEE---EEcCCCCccCCeeEEEECCCCC-EEEEE
Confidence            33332        1249999998887544   22   24566789999999995 54443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.04  E-value=1.5e-08  Score=105.49  Aligned_cols=166  Identities=11%  Similarity=0.039  Sum_probs=126.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC-CCc
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP----LSPPP-RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR-RTP  152 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~-~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-~~V  152 (730)
                      ..++.|++++.++.|.+||.++++    +..+. ..+.++.++|+|++|+  +.++.|+.||. +|+.+..++.+. ..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            456788899999999999998873    33444 4688999999999888  45788999998 899999998753 468


Q ss_pred             EEEEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEEecCC-------CCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004785          153 WVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRDFY-------RPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~l~h~-------~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~  223 (730)
                      .++.+.+ +++++++.+. ++.|..+|. +|+.+..+...       .....+++.++|++|++..+ +.|.+||.. ++
T Consensus        80 ~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~  156 (276)
T 3no2_A           80 QTARILP-DGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ  156 (276)
T ss_dssp             EEEEECT-TSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccEECC-CCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence            8899999 8999998887 778888886 67776665311       23456788999999998874 559999987 66


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .+.    .......+.++.+.++|..+++..
T Consensus       157 ~~w----~~~~~~~~~~~~~~~~g~~~v~~~  183 (276)
T 3no2_A          157 LLN----SVKLSGTPFSSAFLDNGDCLVACG  183 (276)
T ss_dssp             EEE----EEECSSCCCEEEECTTSCEEEECB
T ss_pred             EEE----EEECCCCccceeEcCCCCEEEEeC
Confidence            533    222234567788899999766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.00  E-value=4.3e-09  Score=109.66  Aligned_cols=147  Identities=12%  Similarity=0.106  Sum_probs=109.4

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC----CcEEEEE
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWN  178 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D----gtVrLWD  178 (730)
                      +..+...+.+++|+++|++++++..++.|++||..+++....+..+...+.+++|+| +++++++...+    +.|.+||
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEEC
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEe
Confidence            344566789999999999888888899999999998886655545677899999999 78888887766    6899999


Q ss_pred             CCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEEC-------CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCC
Q 004785          179 ASTAECIGSRD---FYRPIASIAFHASGELLAVASG-------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAA  248 (730)
Q Consensus       179 l~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSd-------d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~  248 (730)
                      ..+++....+.   ....+..++++|+|+++++...       +.|+.||..+++..    .+......+..++|+|+|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEEEESSEEEEEECTTSS
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE----EeecCCCcccceEECCCCC
Confidence            98877653332   3457899999999998776653       23666665544321    2223334578999999998


Q ss_pred             eEEEEE
Q 004785          249 PLLLTA  254 (730)
Q Consensus       249 ~Llatg  254 (730)
                      +++++.
T Consensus       195 ~l~v~~  200 (333)
T 2dg1_A          195 VLWVTE  200 (333)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.00  E-value=6.9e-08  Score=98.42  Aligned_cols=170  Identities=9%  Similarity=0.095  Sum_probs=121.3

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCC---C------CCCCCCeEEEEE-CCCCCEEEEEeC-CCeEEEEECCCCeEEEEE
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCP---L------SPPPRSTIAAAF-SPDGKTLASTHG-DHTVKIIDCQTGSCLKVL  145 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~---L------~gH~~~Vt~laf-SPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l  145 (730)
                      ....+..+++...++.|.+||.....   +      .+|...+.++++ .++++++++... ++.|++|| .+++.+..+
T Consensus        37 ~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~  115 (286)
T 1q7f_A           37 VNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKF  115 (286)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEE
T ss_pred             ECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEe
Confidence            33345556666778899999976431   1      234567899999 567777666643 88999999 677777777


Q ss_pred             ec-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004785          146 HG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVAS-GHKLYIWRYN  220 (730)
Q Consensus       146 ~g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~  220 (730)
                      .. +...+..+++++ +++++++...++.|++||.. ++.+..+.   +...+..++++++|+++++.. ++.|++||..
T Consensus       116 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~  193 (286)
T 1q7f_A          116 GATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE  193 (286)
T ss_dssp             CTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred             cCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence            43 445789999999 78888888888999999964 55555553   345689999999999766655 5669999975


Q ss_pred             CCccccCCeEEec--CCCCeEEEEEccCCCeEEEE
Q 004785          221 MREETSSPRIVLR--TRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       221 t~~~~~~~~~l~~--h~~~V~sVaFSPdG~~Llat  253 (730)
                      .. ...   .+..  +...+..++++++|+.+++.
T Consensus       194 g~-~~~---~~~~~g~~~~p~~i~~d~~G~l~v~~  224 (286)
T 1q7f_A          194 GQ-YLR---QIGGEGITNYPIGVGINSNGEILIAD  224 (286)
T ss_dssp             CC-EEE---EESCTTTSCSEEEEEECTTCCEEEEE
T ss_pred             CC-EEE---EEccCCccCCCcEEEECCCCCEEEEe
Confidence            43 211   2222  23578999999999855554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.00  E-value=1.5e-08  Score=119.19  Aligned_cols=237  Identities=12%  Similarity=0.018  Sum_probs=144.5

Q ss_pred             ecCCCEEEEEeCC-----CeEEEEeCCCCCCC-CCCCC--eEEEEECCCCCEEEEEeCCCe--------------EEEEE
Q 004785           78 RDARRGLASWVEA-----ESLHHLRPKYCPLS-PPPRS--TIAAAFSPDGKTLASTHGDHT--------------VKIID  135 (730)
Q Consensus        78 ~d~g~~L~Sgs~D-----gsIrlWd~~t~~L~-gH~~~--Vt~lafSPDG~~LaSgS~Dgt--------------VrVWD  135 (730)
                      +.+++.|+....+     ..|++||+.++... .+...  +..++|+|| +.|+.++.|..              |++|+
T Consensus       171 SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~  249 (741)
T 1yr2_A          171 SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHR  249 (741)
T ss_dssp             CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEE
T ss_pred             CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEE
Confidence            3455556544432     36999999987532 11112  357899999 99998887654              99999


Q ss_pred             CCCCeE--EEEEec--CCCCcEEEEEccCCCCEEEEEeCC-----CcEEEEECCCC--e-EEEEecCCCCeEEEEEcCCC
Q 004785          136 CQTGSC--LKVLHG--HRRTPWVVRFHPLNPTIIASGSLD-----HEVRLWNASTA--E-CIGSRDFYRPIASIAFHASG  203 (730)
Q Consensus       136 l~tg~~--l~~l~g--H~~~V~sVafSP~dg~lLaSgS~D-----gtVrLWDl~tg--~-~i~~l~h~~~V~sVafSPdG  203 (730)
                      +.++..  ...+..  +...+..+.|+| ++++++..+.+     ..|++||+.++  + ......+...+... ++|+|
T Consensus       250 lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg  327 (741)
T 1yr2_A          250 LGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVG  327 (741)
T ss_dssp             TTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEET
T ss_pred             CCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccC
Confidence            987752  333433  334588999999 88777766644     38999999887  4 44444455455555 34899


Q ss_pred             CEEEEEECC-----eEEEEEcCCCc-cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccC
Q 004785          204 ELLAVASGH-----KLYIWRYNMRE-ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRY  277 (730)
Q Consensus       204 ~~LAsgSdd-----~I~VWDl~t~~-~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~  277 (730)
                      +.|+..++.     +|++||+.++. ...  ..+..+...+..+.|+  +..++++.......                 
T Consensus       328 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~-----------------  386 (741)
T 1yr2_A          328 DQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPESKDNLESVGIA--GNRLFASYIHDAKS-----------------  386 (741)
T ss_dssp             TEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCCSSEEEEEEEE--BTEEEEEEEETTEE-----------------
T ss_pred             CEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCCCCeEEEEEEE--CCEEEEEEEECCEE-----------------
Confidence            988888742     29999987752 211  2233344456677777  44465554322111                 


Q ss_pred             CCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceee
Q 004785          278 PPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       278 p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                         .+.+.+.. +........ + ....+..+.+++|++.|++...+...+.+++.+++.+...+.|
T Consensus       387 ---~l~~~~~~-g~~~~~l~~-~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          387 ---QVLAFDLD-GKPAGAVSL-P-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             ---EEEEEETT-SCEEEECBC-S-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             ---EEEEEeCC-CCceeeccC-C-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence               12222211 000000000 0 0112335788899999999888888899999999877664444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.98  E-value=2.4e-08  Score=116.77  Aligned_cols=241  Identities=11%  Similarity=0.011  Sum_probs=150.5

Q ss_pred             EecCCCEEE-EEe----CCCeEEEEeCCCCCC-CCCCCCe--EEEEECCCCCEEEEEeCCC-------------eEEEEE
Q 004785           77 GRDARRGLA-SWV----EAESLHHLRPKYCPL-SPPPRST--IAAAFSPDGKTLASTHGDH-------------TVKIID  135 (730)
Q Consensus        77 ~~d~g~~L~-Sgs----~DgsIrlWd~~t~~L-~gH~~~V--t~lafSPDG~~LaSgS~Dg-------------tVrVWD  135 (730)
                      .+.+++.|+ +..    +...|++||+.+++. ..+...+  ..++|+ ||+.|+.++.|.             .|++|+
T Consensus       136 ~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~  214 (693)
T 3iuj_A          136 FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHR  214 (693)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEE
T ss_pred             ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEE
Confidence            344555555 332    335699999998853 2222223  578999 999999998874             499999


Q ss_pred             CCCCeE--EEEEe--c-CCCCcEEEEEccCCCCEE-EEEeC---CCcEEEEECCCC--eEEEEecCCCCeEEEEEcCCCC
Q 004785          136 CQTGSC--LKVLH--G-HRRTPWVVRFHPLNPTII-ASGSL---DHEVRLWNASTA--ECIGSRDFYRPIASIAFHASGE  204 (730)
Q Consensus       136 l~tg~~--l~~l~--g-H~~~V~sVafSP~dg~lL-aSgS~---DgtVrLWDl~tg--~~i~~l~h~~~V~sVafSPdG~  204 (730)
                      +.++..  ...+.  . |...+..+.|+| +++++ ++.+.   ++.|++||+.++  +......+....... |+++|.
T Consensus       215 lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~  292 (693)
T 3iuj_A          215 LGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGS  292 (693)
T ss_dssp             TTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETT
T ss_pred             CCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCC
Confidence            987642  33333  3 445577899999 66655 44432   358999999876  444444555555554 777787


Q ss_pred             EEEEEEC-----CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCC
Q 004785          205 LLAVASG-----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPP  279 (730)
Q Consensus       205 ~LAsgSd-----d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~  279 (730)
                      .|+..++     .+|.+||+.++.... ...+..+...+.  .|++++++|+.+.......                   
T Consensus       293 ~l~~~t~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~-------------------  350 (693)
T 3iuj_A          293 TLYLLTNRDAPNRRLVTVDAANPGPAH-WRDLIPERQQVL--TVHSGSGYLFAEYMVDATA-------------------  350 (693)
T ss_dssp             EEEEEECTTCTTCEEEEEETTSCCGGG-CEEEECCCSSCE--EEEEETTEEEEEEEETTEE-------------------
T ss_pred             EEEEEECCCCCCCEEEEEeCCCCCccc-cEEEecCCCCEE--EEEEECCEEEEEEEECCee-------------------
Confidence            6666652     239999998765422 235666666665  8999999888776533211                   


Q ss_pred             CeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCcceeeec
Q 004785          280 PVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT  346 (730)
Q Consensus       280 ~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~  346 (730)
                       .+.+++........+..  +. ......+.+++|++.|++...+...+.+++..++.+...+.|..
T Consensus       351 -~l~~~d~~g~~~~~l~~--p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          351 -RVEQFDYEGKRVREVAL--PG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             -EEEEECTTSCEEEEECC--SS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred             -EEEEEECCCCeeEEeec--CC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence             22223222111000000  00 01122566788999999988888889999999987766555543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.93  E-value=1.8e-08  Score=117.39  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=100.1

Q ss_pred             CCCCCeEEEEECCCCCEEEEE-----eCCCeEEEEECCCCeEEEEEecCCCC--cEEEEEccCCCCEEEEEeCCCc----
Q 004785          105 PPPRSTIAAAFSPDGKTLAST-----HGDHTVKIIDCQTGSCLKVLHGHRRT--PWVVRFHPLNPTIIASGSLDHE----  173 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSg-----S~DgtVrVWDl~tg~~l~~l~gH~~~--V~sVafSP~dg~lLaSgS~Dgt----  173 (730)
                      +|...+..++|||||++||.+     +++.+|++||+.+++.+.  ..+...  ...++|+| +++.|+.++.|..    
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCc
Confidence            566679999999999999844     445789999999998641  112222  26799999 8888888888776    


Q ss_pred             ---------EEEEECCCCeE--EEEec---CCCCeEEEEEcCCCCEEEEEE-CC----eEEEEEcCCCccccCCeEEecC
Q 004785          174 ---------VRLWNASTAEC--IGSRD---FYRPIASIAFHASGELLAVAS-GH----KLYIWRYNMREETSSPRIVLRT  234 (730)
Q Consensus       174 ---------VrLWDl~tg~~--i~~l~---h~~~V~sVafSPdG~~LAsgS-dd----~I~VWDl~t~~~~~~~~~l~~h  234 (730)
                               |++|++.+++.  ...+.   +...+.++.|+|||++|+..+ ++    .|++||..+++    ...+..+
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~----~~~l~~~  270 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD----FRLLVKG  270 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----CEEEEEC
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----eEEeecC
Confidence                     99999998762  22222   345788999999999887766 33    37777654443    2345556


Q ss_pred             CCCeEEEEEccCCCeEEEEE
Q 004785          235 RRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       235 ~~~V~sVaFSPdG~~Llatg  254 (730)
                      ...+....| ++|. +++.+
T Consensus       271 ~~~~~~~~~-~~g~-l~~~s  288 (695)
T 2bkl_A          271 VGAKYEVHA-WKDR-FYVLT  288 (695)
T ss_dssp             SSCCEEEEE-ETTE-EEEEE
T ss_pred             CCceEEEEe-cCCc-EEEEE
Confidence            666677767 6777 66554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.90  E-value=3.8e-07  Score=94.68  Aligned_cols=178  Identities=8%  Similarity=0.004  Sum_probs=115.4

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCCC--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC-
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCPL--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH-  148 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH-  148 (730)
                      .-..+..+.+..+++...++.|..||..++.+  ......+.+++|+++|+++++ . +..|.+||.++++........ 
T Consensus        16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~   93 (297)
T 3g4e_A           16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN   93 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT
T ss_pred             cCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC
Confidence            34444444566677777888999999887642  234567999999999995554 3 568999999888754333221 


Q ss_pred             ---CCCcEEEEEccCCCCEEEEEeCC---------CcEEEEECC-CCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCe
Q 004785          149 ---RRTPWVVRFHPLNPTIIASGSLD---------HEVRLWNAS-TAECIGSRDFYRPIASIAFHASGELLAVAS--GHK  213 (730)
Q Consensus       149 ---~~~V~sVafSP~dg~lLaSgS~D---------gtVrLWDl~-tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~  213 (730)
                         ...++.++++| +++++++...+         ....||.+. .++...........+.++|+|||+.|+++.  +++
T Consensus        94 ~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~  172 (297)
T 3g4e_A           94 DKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYS  172 (297)
T ss_dssp             TCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCc
Confidence               23478899999 78877765322         223444443 244444444445578999999999887766  456


Q ss_pred             EEEEEcC--CCccccCCeEE---ecCCCCeEEEEEccCCCeEEEE
Q 004785          214 LYIWRYN--MREETSSPRIV---LRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       214 I~VWDl~--t~~~~~~~~~l---~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      |++||+.  ++.... ...+   ..+...+..++++++|+.+++.
T Consensus       173 i~~~~~d~~~G~~~~-~~~~~~~~~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          173 VDAFDYDLQTGQISN-RRSVYKLEKEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             EEEEEECTTTCCEEE-EEEEEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred             EEEEeccCCCCcccC-cEEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            9999984  443211 1111   1233567899999999855544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.90  E-value=1.5e-07  Score=108.37  Aligned_cols=170  Identities=11%  Similarity=0.024  Sum_probs=128.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECC--CCeEEEEEecCCCCcEEEE
Q 004785           82 RGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQ--TGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~--tg~~l~~l~gH~~~V~sVa  156 (730)
                      ..+++...++.|.++|..++++.   .....+..+.|+|||++|++++.|+.|.+||+.  +++.+..+.... ....++
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia  246 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIE  246 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeE
Confidence            45566678899999999887432   123357799999999999999999999999996  888888887543 467899


Q ss_pred             Ec----cCCCCEEEE-EeCCCcEEEEECCCCeEEEEecC------------CCCeEEEEEcCCCCEEEEEE--CCeEEEE
Q 004785          157 FH----PLNPTIIAS-GSLDHEVRLWNASTAECIGSRDF------------YRPIASIAFHASGELLAVAS--GHKLYIW  217 (730)
Q Consensus       157 fS----P~dg~lLaS-gS~DgtVrLWDl~tg~~i~~l~h------------~~~V~sVafSPdG~~LAsgS--dd~I~VW  217 (730)
                      |+    | +++++++ ...+++|.++|..+.+.++.+..            ...+..+.+++++..+++.-  ++.|.++
T Consensus       247 ~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v  325 (567)
T 1qks_A          247 TSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  325 (567)
T ss_dssp             ECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence            99    7 6666555 45579999999999998877542            12678899999988666655  3559999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      |+...+...  ............+.|+|||++++++..
T Consensus       326 d~~~~~~~~--v~~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          326 DYTDLNNLK--TTEISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             ETTCSSEEE--EEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             ecCCCccce--eeeeeccccccCceECCCCCEEEEEeC
Confidence            997764322  122344566788999999999887764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.90  E-value=6.8e-08  Score=99.34  Aligned_cols=171  Identities=18%  Similarity=0.134  Sum_probs=117.1

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCCCC-------C-CCCCeEEEEECCCCCEEEEE----e-------------CCCe
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYCPLS-------P-PPRSTIAAAFSPDGKTLAST----H-------------GDHT  130 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~-------g-H~~~Vt~lafSPDG~~LaSg----S-------------~Dgt  130 (730)
                      +....+..+++...++.|.+||..++++.       + ....+.+++++|+|+++++.    +             ..+.
T Consensus        75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence            33334555555445689999998766421       1 12346789999999988873    2             1345


Q ss_pred             EEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-CCeE---EEEe-cCCCCeEEEEEcCCCCE
Q 004785          131 VKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-TAEC---IGSR-DFYRPIASIAFHASGEL  205 (730)
Q Consensus       131 VrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~---i~~l-~h~~~V~sVafSPdG~~  205 (730)
                      |..+|.. ++ +..+..+...+..++|+| +++++++.+.++.|++||+. +++.   ...+ .....+..++++++|++
T Consensus       155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l  231 (296)
T 3e5z_A          155 VFRLAPD-GT-LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLI  231 (296)
T ss_dssp             EEEECTT-SC-EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCE
T ss_pred             EEEECCC-CC-EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCE
Confidence            6666655 54 445556667789999999 77777777888999999997 5554   2223 23445678999999997


Q ss_pred             EEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEE-ccCCCeEEEEEe
Q 004785          206 LAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHF-HPHAAPLLLTAE  255 (730)
Q Consensus       206 LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaF-SPdG~~Llatgs  255 (730)
                      +++. +++|.+||.. ++...   .+..+.. +.+++| +|+++.|.+++.
T Consensus       232 ~v~~-~~~v~~~~~~-g~~~~---~~~~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          232 WASA-GDGVHVLTPD-GDELG---RVLTPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEEE-TTEEEEECTT-SCEEE---EEECSSC-CCEEEEESTTSCEEEEEET
T ss_pred             EEEc-CCeEEEECCC-CCEEE---EEECCCC-ceeEEEECCCCCEEEEEcC
Confidence            6666 7779999986 43322   3444555 899999 589887777653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.89  E-value=1.2e-07  Score=95.20  Aligned_cols=168  Identities=10%  Similarity=0.004  Sum_probs=117.7

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      .+. |+.+..++.|..||.....+.    .....+.+++++++|+++++...++.|.+|+..+.............+..+
T Consensus        77 ~g~-l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i  155 (270)
T 1rwi_B           77 AGT-VYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  155 (270)
T ss_dssp             TCC-EEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCE
T ss_pred             CCC-EEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeE
Confidence            344 444444889999998765321    233578999999999977777778899999876554433223333467889


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      ++++ +++++++...++.|.+||..++...... .....+..++++++|+++++.. ++.|.+||........   ....
T Consensus       156 ~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---~~~~  231 (270)
T 1rwi_B          156 AVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFT  231 (270)
T ss_dssp             EECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE---CCCC
T ss_pred             EEeC-CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee---eccC
Confidence            9999 7788888777889999999876654432 2336789999999997655554 4569999986643211   1122


Q ss_pred             CCCCeEEEEEccCCCeEEE
Q 004785          234 TRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Lla  252 (730)
                      +...+.+++++++|+.+++
T Consensus       232 ~~~~p~~i~~~~~g~l~v~  250 (270)
T 1rwi_B          232 GLNTPLAVAVDSDRTVYVA  250 (270)
T ss_dssp             SCSCEEEEEECTTCCEEEE
T ss_pred             CCCCceeEEECCCCCEEEE
Confidence            3357899999999984444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.87  E-value=1.2e-07  Score=100.30  Aligned_cols=173  Identities=10%  Similarity=0.009  Sum_probs=122.0

Q ss_pred             EEEecCCCEEEEEe-CCCeEEEEeCCCCCCC-----CC----CCCeEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEE
Q 004785           75 EAGRDARRGLASWV-EAESLHHLRPKYCPLS-----PP----PRSTIAAAFSPDGKTLASTH--GDHTVKIIDCQTGSCL  142 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs-~DgsIrlWd~~t~~L~-----gH----~~~Vt~lafSPDG~~LaSgS--~DgtVrVWDl~tg~~l  142 (730)
                      ++...++ .++... .++.|.+||..+.++.     +.    ......+++  +++.|+.+.  .++.|.+||..+++.+
T Consensus        89 i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           89 IHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             EEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             EEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            3343344 455444 7899999999876421     11    114556777  455555554  4889999999999988


Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCC----------CcEEEEECCCCeEEEEecC--CCCeEEEEEcCCCCEEEEEE
Q 004785          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLD----------HEVRLWNASTAECIGSRDF--YRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~D----------gtVrLWDl~tg~~i~~l~h--~~~V~sVafSPdG~~LAsgS  210 (730)
                      ..+... .....+.++| ++++++++..+          +.|.+||..+++.+..+..  ......++|+|++++|+++.
T Consensus       166 ~~i~~g-~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          166 DELTIG-IQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             EEEECS-SCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             EEEEcC-CCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence            888653 3467899999 78877776654          7899999999988766653  34789999999999998876


Q ss_pred             CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          211 GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       211 dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      . .|++||..+++... .............++++|++..+.++.
T Consensus       244 ~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          244 N-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             S-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             c-EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEc
Confidence            5 89999998876532 111122246789999999655555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.85  E-value=8.3e-07  Score=102.08  Aligned_cols=177  Identities=11%  Similarity=-0.019  Sum_probs=125.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCC--CCCCC---CCCCCeEEEEEC----CCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPK--YCPLS---PPPRSTIAAAFS----PDGKTLASTHG-DHTVKIIDCQTGSCLKV  144 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~--t~~L~---gH~~~Vt~lafS----PDG~~LaSgS~-DgtVrVWDl~tg~~l~~  144 (730)
                      +..+.+++.++.++.|+.|.+||+.  +.++.   ........++|+    |||++++++.. +++|.|+|..+.+.++.
T Consensus       202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~  281 (567)
T 1qks_A          202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI  281 (567)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEE
T ss_pred             eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEE
Confidence            4445577888888899999999985  44211   012235789999    69999988876 58999999999998887


Q ss_pred             EecC-----------CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE--EEecCCCCeEEEEEcCCCCEEEEEE-
Q 004785          145 LHGH-----------RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI--GSRDFYRPIASIAFHASGELLAVAS-  210 (730)
Q Consensus       145 l~gH-----------~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i--~~l~h~~~V~sVafSPdG~~LAsgS-  210 (730)
                      +...           ...+..+..++++..++++...+|.|.++|..+.+..  ..+........+.|+|+|++|+++. 
T Consensus       282 i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          282 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             EECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             EeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC
Confidence            7522           1257788888855666777777899999999876433  3344556678899999999998887 


Q ss_pred             -CCeEEEEEcCCCccccCCeEE---ecCCC-CeEEEEEccCCCeEEEEE
Q 004785          211 -GHKLYIWRYNMREETSSPRIV---LRTRR-SLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       211 -dd~I~VWDl~t~~~~~~~~~l---~~h~~-~V~sVaFSPdG~~Llatg  254 (730)
                       +++|.++|+.+++..... ..   ..|.. .+. + ++|++..+.++.
T Consensus       362 ~sn~V~ViD~~t~kl~~~i-~vgg~~Phpg~g~~-~-~~p~~g~v~~t~  407 (567)
T 1qks_A          362 ARNKLVVIDTKEGKLVAIE-DTGGQTPHPGRGAN-F-VHPTFGPVWATS  407 (567)
T ss_dssp             GGTEEEEEETTTTEEEEEE-ECSSSSBCCTTCEE-E-EETTTEEEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEE-eccCcCCCCcccee-e-ECCCCCcEEEeC
Confidence             466999999988754311 11   12322 222 2 688866565554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.85  E-value=1.8e-06  Score=88.39  Aligned_cols=163  Identities=10%  Similarity=0.052  Sum_probs=108.9

Q ss_pred             EeCCCeEEEEeCCCCCCC--------CCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEE-Eec----CCCCc
Q 004785           87 WVEAESLHHLRPKYCPLS--------PPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKV-LHG----HRRTP  152 (730)
Q Consensus        87 gs~DgsIrlWd~~t~~L~--------gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~-l~g----H~~~V  152 (730)
                      ...++.|.+||..++++.        ++...+.+++++++ |+++++. .+..|.+||.. ++.... ...    ....+
T Consensus        42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~  119 (314)
T 1pjx_A           42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGC  119 (314)
T ss_dssp             TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCC
T ss_pred             CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCC
Confidence            366788999997766421        24567999999999 6655544 44479999988 765433 221    12358


Q ss_pred             EEEEEccCCCCEEEEEeCC---------------CcEEEEECCCCeEEEEecCCCCeEEEEEc----CCCCEEEEEE--C
Q 004785          153 WVVRFHPLNPTIIASGSLD---------------HEVRLWNASTAECIGSRDFYRPIASIAFH----ASGELLAVAS--G  211 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~D---------------gtVrLWDl~tg~~i~~l~h~~~V~sVafS----PdG~~LAsgS--d  211 (730)
                      ..+++++ +++++++...+               +.|..||.. ++.............++|+    |+|+.|+++.  +
T Consensus       120 ~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~  197 (314)
T 1pjx_A          120 NDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT  197 (314)
T ss_dssp             CEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT
T ss_pred             cCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC
Confidence            8999999 78888877655               568888876 6655444444567899999    9998777665  4


Q ss_pred             CeEEEEEcC-CCcccc--CCeEEecCC-CCeEEEEEccCCCeEEEE
Q 004785          212 HKLYIWRYN-MREETS--SPRIVLRTR-RSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       212 d~I~VWDl~-t~~~~~--~~~~l~~h~-~~V~sVaFSPdG~~Llat  253 (730)
                      ++|++||+. .++...  ....+..+. ..+..++++++|+.+++.
T Consensus       198 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~  243 (314)
T 1pjx_A          198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence            569999986 332111  001111222 567899999999866554

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.78  E-value=1.7e-06  Score=91.31  Aligned_cols=169  Identities=12%  Similarity=0.005  Sum_probs=112.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec---C-CCCc
Q 004785           79 DARRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG---H-RRTP  152 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g---H-~~~V  152 (730)
                      +.+..+++...++.|..||..++.+.  .....+.+++|+++|+++++. .+ .|.+||..+++.......   . ...+
T Consensus        59 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~  136 (326)
T 2ghs_A           59 ASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRS  136 (326)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEE
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCC
Confidence            34556666667788889988765321  234679999999999877754 44 599999988875433221   1 1347


Q ss_pred             EEEEEccCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC--CC
Q 004785          153 WVVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN--MR  222 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~--t~  222 (730)
                      ..++++| +++++++...      .+.|..+|  +++...........+.++|+|||+.|+++.  ++.|++||+.  ++
T Consensus       137 ~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G  213 (326)
T 2ghs_A          137 NDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  213 (326)
T ss_dssp             EEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             CCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence            8899999 7777776542      24566666  565544434344678999999999887776  3459999986  44


Q ss_pred             -ccccCCeEEe---cCCCCeEEEEEccCCCeEEEE
Q 004785          223 -EETSSPRIVL---RTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       223 -~~~~~~~~l~---~h~~~V~sVaFSPdG~~Llat  253 (730)
                       .... ...+.   .....+..++++++|..++++
T Consensus       214 l~~~~-~~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          214 LPTGK-AEVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             CBSSC-CEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             CcccC-ceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence             3211 11221   133457889999999865554

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.77  E-value=3e-07  Score=108.02  Aligned_cols=145  Identities=14%  Similarity=0.064  Sum_probs=100.1

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCc-------
Q 004785          106 PPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE-------  173 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dgt-------  173 (730)
                      |...+..++|||||++|+.++.+     .+|++||+.+++.+... .+...+..++|+| + +.|+.++.|+.       
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEEST-T-SEEEEEECCCC-------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEEC-C-CEEEEEEecCcccccccc
Confidence            33468899999999999988664     46999999999876532 1222245789999 6 77777766554       


Q ss_pred             -------EEEEECCCCeE--EEEec---CCCCeEEEEEcCCCCEEEEEE-CC-----eEEEEEcCCCccccCCeEEecCC
Q 004785          174 -------VRLWNASTAEC--IGSRD---FYRPIASIAFHASGELLAVAS-GH-----KLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       174 -------VrLWDl~tg~~--i~~l~---h~~~V~sVafSPdG~~LAsgS-dd-----~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                             |++|++.+++.  ...+.   +...+..+.|+|||++|+..+ ++     .|++||+.++... ....+..+.
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~  316 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-PVTALIPDL  316 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC-CCEEEECSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc-ccEEecCCC
Confidence                   99999987752  22332   223588999999999888776 32     4999999876321 023455555


Q ss_pred             CCeEEEEEccCCCeEEEEEe
Q 004785          236 RSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+.... +|+|+.|+..++
T Consensus       317 ~~~~~~~-~~dg~~l~~~s~  335 (741)
T 1yr2_A          317 KAQWDFV-DGVGDQLWFVSG  335 (741)
T ss_dssp             SSCEEEE-EEETTEEEEEEC
T ss_pred             CceEEEE-eccCCEEEEEEC
Confidence            5555553 589998887764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.76  E-value=2.1e-07  Score=108.73  Aligned_cols=210  Identities=12%  Similarity=0.083  Sum_probs=125.9

Q ss_pred             CCCCCeEEEEECCCCCEEEEEe-----CCCeEEEEECCCCeEEEE-EecCCCCcEEEEEccCCCCEEEEEeCCC------
Q 004785          105 PPPRSTIAAAFSPDGKTLASTH-----GDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDH------  172 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS-----~DgtVrVWDl~tg~~l~~-l~gH~~~V~sVafSP~dg~lLaSgS~Dg------  172 (730)
                      +|...+..++|||||++||.+.     ++.+|++||+.+|+.+.. +.+.  ....++|+  |++.|+.++.|.      
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws--Dg~~l~y~~~~~~~~~~~  201 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL--GNEGFFYSSYDKPDGSEL  201 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE--TTTEEEEEESSCCC----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe--CCCEEEEEEecCcccccc
Confidence            3566789999999999998643     236799999999986543 2221  13568899  445555555553      


Q ss_pred             -------cEEEEECCCCeE--EEEec----CCCCeEEEEEcCCCCEEEEEE-C----CeEEEEEcCCCccccCCeEEecC
Q 004785          173 -------EVRLWNASTAEC--IGSRD----FYRPIASIAFHASGELLAVAS-G----HKLYIWRYNMREETSSPRIVLRT  234 (730)
Q Consensus       173 -------tVrLWDl~tg~~--i~~l~----h~~~V~sVafSPdG~~LAsgS-d----d~I~VWDl~t~~~~~~~~~l~~h  234 (730)
                             .|++|++.++..  ...+.    +...+.++.|+|||++|+... .    ..|++||+.++..  ....+..+
T Consensus       202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~--~~~~l~~~  279 (693)
T 3iuj_A          202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA--PLLTVQGD  279 (693)
T ss_dssp             ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC--CCEEEECS
T ss_pred             cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC--ceEEEeCC
Confidence                   499999987653  23332    234578899999999886654 2    2499999987642  23345556


Q ss_pred             CCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecC
Q 004785          235 RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRD  314 (730)
Q Consensus       235 ~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpD  314 (730)
                      ....... |+++|..++..++...                   +...|..++...+.........+.. -.. . .|+++
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~-------------------~~~~l~~~d~~~~~~~~~~~l~~~~-~~~-~-~~s~~  336 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDA-------------------PNRRLVTVDAANPGPAHWRDLIPER-QQV-L-TVHSG  336 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTC-------------------TTCEEEEEETTSCCGGGCEEEECCC-SSC-E-EEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCC-------------------CCCEEEEEeCCCCCccccEEEecCC-CCE-E-EEEEE
Confidence            6666555 7788887777654211                   1123444554443321111111111 112 2 89999


Q ss_pred             CCEEEEEecCCCCCcccceeecCCCcceee
Q 004785          315 DERISLQHTEHDSGATRTQQSLRSSSSVRL  344 (730)
Q Consensus       315 g~rI~~~~~~~dsgs~~~~~~~~ss~~~~l  344 (730)
                      ++.|++...++. ...+...++++....++
T Consensus       337 g~~lv~~~~~~g-~~~l~~~d~~g~~~~~l  365 (693)
T 3iuj_A          337 SGYLFAEYMVDA-TARVEQFDYEGKRVREV  365 (693)
T ss_dssp             TTEEEEEEEETT-EEEEEEECTTSCEEEEE
T ss_pred             CCEEEEEEEECC-eeEEEEEECCCCeeEEe
Confidence            999887554332 22445555554433333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.76  E-value=3.3e-07  Score=92.01  Aligned_cols=168  Identities=8%  Similarity=0.002  Sum_probs=112.3

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCcE
Q 004785           80 ARRGLA-SWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPW  153 (730)
Q Consensus        80 ~g~~L~-Sgs~DgsIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH~~~V~  153 (730)
                      .+...+ +...++.|..|+..+...    ..+...+.+++++++|+++++.. ++.|.+||...... ..+. .....+.
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~  111 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPE  111 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEE
T ss_pred             CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCc
Confidence            444333 335678899998765421    23345688999999998666655 88999999876543 3333 2335688


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l  231 (730)
                      .+++++ +++++++...++.|.+||..+....... .....+..++++++|+++++.. ++.|++||........   ..
T Consensus       112 ~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~  187 (270)
T 1rwi_B          112 GLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LP  187 (270)
T ss_dssp             EEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CC
T ss_pred             ceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---ec
Confidence            999999 7888888778899999987665443322 2334678899999999665554 4569999987654322   11


Q ss_pred             ecCCCCeEEEEEccCCCeEEEE
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..+...+..++++++|..+++.
T Consensus       188 ~~~~~~p~~i~~d~~g~l~v~~  209 (270)
T 1rwi_B          188 FTDITAPWGIAVDEAGTVYVTE  209 (270)
T ss_dssp             CSSCCSEEEEEECTTCCEEEEE
T ss_pred             ccCCCCceEEEECCCCCEEEEE
Confidence            2233678999999999644443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.74  E-value=5.3e-07  Score=93.79  Aligned_cols=175  Identities=11%  Similarity=-0.003  Sum_probs=116.2

Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC---
Q 004785           74 FEAGRDARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH---  148 (730)
Q Consensus        74 l~a~~d~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH---  148 (730)
                      ..+..+++..+++...++.|..|+....  .+..+...+..++++++|+++++...++.|.+||.. ++........   
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~  128 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGK  128 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTE
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCC
Confidence            3334344446778888888999987422  233456678999999999977766667899999986 6533222111   


Q ss_pred             -CCCcEEEEEccCCCCEEEE----EeC-------------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785          149 -RRTPWVVRFHPLNPTIIAS----GSL-------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       149 -~~~V~sVafSP~dg~lLaS----gS~-------------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS  210 (730)
                       ...+..+++++ +++++++    |..             .+.|..||..+++..... .....+.++|+|||+.|+++.
T Consensus       129 ~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~  206 (305)
T 3dr2_A          129 RLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQ  206 (305)
T ss_dssp             ECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEe
Confidence             13467899999 8888886    332             256888888777655444 445678899999999888776


Q ss_pred             C-------CeEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEE
Q 004785          211 G-------HKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       211 d-------d~I~VWDl~t~~~~~~~~~l-~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      .       +.|++||+.... +.....+ .........++++++|+.+++
T Consensus       207 ~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~  255 (305)
T 3dr2_A          207 TPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS  255 (305)
T ss_dssp             CCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC
T ss_pred             cCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe
Confidence            4       359999987654 2111111 112334567889999984443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.70  E-value=7.9e-07  Score=92.37  Aligned_cols=167  Identities=13%  Similarity=0.061  Sum_probs=124.7

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCC----CCCC-CCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEec----
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCP----LSPP-PRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHG----  147 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH-~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~g----  147 (730)
                      ..++..++  +.++.|..||. +++    +..+ ...+.++.+.+||++|++.+. ++.|..+|. +|+.+..+..    
T Consensus        45 ~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~  120 (276)
T 3no2_A           45 TKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGI  120 (276)
T ss_dssp             CTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSC
T ss_pred             CCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC
Confidence            34555555  45677888887 442    2232 346889999999999999887 788888885 7887777652    


Q ss_pred             --CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCcc
Q 004785          148 --HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREE  224 (730)
Q Consensus       148 --H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~  224 (730)
                        +......+++.+ +++++++...++.|..||.. |+.+..+.....+.++.+.++|++|++++++ +|..+|..+++.
T Consensus       121 ~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          121 ERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             SSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             CcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence              212345677888 89999999999999999998 9999988876777888999999999888865 599999988876


Q ss_pred             ccCCeEEecC------CCCeEEEEEccCCCeEEEE
Q 004785          225 TSSPRIVLRT------RRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       225 ~~~~~~l~~h------~~~V~sVaFSPdG~~Llat  253 (730)
                      +.   .+...      -..+..+...++|..+++.
T Consensus       199 ~w---~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          199 VR---RVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             EE---EEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             EE---EecCCCCCCccccccccceEcCCCCEEEEe
Confidence            44   22211      2347888889999866554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.67  E-value=1.5e-06  Score=88.91  Aligned_cols=166  Identities=11%  Similarity=0.145  Sum_probs=113.3

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCC----CC-----CCCCeEEEEECCCCCEEEEEeCC---------------CeEEEEECC
Q 004785           82 RGLASWVEAESLHHLRPKYCPL----SP-----PPRSTIAAAFSPDGKTLASTHGD---------------HTVKIIDCQ  137 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~L----~g-----H~~~Vt~lafSPDG~~LaSgS~D---------------gtVrVWDl~  137 (730)
                      ..|+.+.....|.+||.+ +++    ..     +...+.+++++++|+++++...+               +.|..||..
T Consensus        83 g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (314)
T 1pjx_A           83 NQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD  161 (314)
T ss_dssp             SEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred             CcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC
Confidence            456666555678889877 532    11     12358899999999888777655               578888866


Q ss_pred             CCeEEEEEecCCCCcEEEEEc----cCCCC-EEEEEeCCCcEEEEECC-CCeE-----EEEec-CC-CCeEEEEEcCCCC
Q 004785          138 TGSCLKVLHGHRRTPWVVRFH----PLNPT-IIASGSLDHEVRLWNAS-TAEC-----IGSRD-FY-RPIASIAFHASGE  204 (730)
Q Consensus       138 tg~~l~~l~gH~~~V~sVafS----P~dg~-lLaSgS~DgtVrLWDl~-tg~~-----i~~l~-h~-~~V~sVafSPdG~  204 (730)
                       ++.... ..+......++|+    | +++ ++++...++.|.+||+. +++.     ...+. +. ..+..++++++|+
T Consensus       162 -g~~~~~-~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          162 -GQMIQV-DTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -SCEEEE-EEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -CCEEEe-ccCCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence             654333 3334457889999    9 665 45555678899999986 4542     11222 22 5678899999999


Q ss_pred             EEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          205 LLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       205 ~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ++++.. ++.|.+||..+++...   .+..+...+.+++|+++|++|.++.
T Consensus       239 l~v~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          239 LLVANWGSSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             EEEEEETTTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEcCCCEEEEEcCCCCcEeE---EEeCCCCCceeEEECCCCCEEEEEe
Confidence            777765 5669999987655322   3444557899999999999665554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.63  E-value=7.8e-06  Score=82.48  Aligned_cols=164  Identities=10%  Similarity=0.030  Sum_probs=116.1

Q ss_pred             CEEEEEeC-CCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCCcE
Q 004785           82 RGLASWVE-AESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRTPW  153 (730)
Q Consensus        82 ~~L~Sgs~-DgsIrlWd~~t~~L-----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH~~~V~  153 (730)
                      ..++.+.. ++.|..||.. +.+     ..+...+.+++++++|.++++...++.|..||.. ++. ..+.  .....+.
T Consensus        26 g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~  102 (299)
T 2z2n_A           26 GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPY  102 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEE
T ss_pred             CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCce
Confidence            34444444 6889999877 432     2345679999999999988877778899999976 443 3332  3455789


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-c-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-D-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~  230 (730)
                      .+++.+ +++++++...++.|.+||. +++..... . ....+..++++++|+++++.. ++.|.+||. +++...  ..
T Consensus       103 ~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~  177 (299)
T 2z2n_A          103 GITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE--FK  177 (299)
T ss_dssp             EEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE--EE
T ss_pred             eeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE--ee
Confidence            999999 8888888777889999999 66544332 2 345789999999998777665 456999998 544321  11


Q ss_pred             EecCCCCeEEEEEccCCCeEEEE
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      .......+..++++++|+.+++.
T Consensus       178 ~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          178 IPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCCCCcceeEEECCCCCEEEEc
Confidence            22334568899999999855543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.60  E-value=8.4e-06  Score=82.25  Aligned_cols=168  Identities=11%  Similarity=0.033  Sum_probs=117.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~~~V~s  154 (730)
                      .+...++...++.|..|+....    .+......+.+++++++|+++++...++.|.+||. +++.... +..+...+..
T Consensus        67 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           67 DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             CCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence            3444444444778888987522    12234557899999999988887777889999998 6654432 2334567899


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEE
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l  231 (730)
                      +++.+ +++++++...++.|..||. +++.... .. ....+..++++++|+++++.. ++.|.+||. +++...  ...
T Consensus       146 i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~~  220 (299)
T 2z2n_A          146 ITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE--FKI  220 (299)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EEC
T ss_pred             EEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE--EEC
Confidence            99999 7888887777889999999 6765543 22 345688999999999655554 456999998 554321  112


Q ss_pred             ecCCCCeEEEEEccCCCeEEEE
Q 004785          232 LRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..+...+..++++++|+.+++.
T Consensus       221 ~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEE
T ss_pred             CCCCCCceeEEECCCCCEEEec
Confidence            2345678999999999855443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.60  E-value=5.2e-06  Score=86.03  Aligned_cols=175  Identities=12%  Similarity=0.061  Sum_probs=113.9

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCCCC---C-----CCCCeEEEEECCCCCEEEEEeCC---------CeEEEEECCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYCPLS---P-----PPRSTIAAAFSPDGKTLASTHGD---------HTVKIIDCQT  138 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~---g-----H~~~Vt~lafSPDG~~LaSgS~D---------gtVrVWDl~t  138 (730)
                      +....+. ++.+. +..|.+||.+++++.   .     ....+++++++|+|+++++...+         ..-.||.+..
T Consensus        60 ~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~  137 (297)
T 3g4e_A           60 ALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP  137 (297)
T ss_dssp             EEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT
T ss_pred             EECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC
Confidence            3333444 55444 567889998776321   1     12347899999999977655321         2234444432


Q ss_pred             -CeEEEEEecCCCCcEEEEEccCCCC-EEEEEeCCCcEEEEEC--CCCeEE--EE---ec-CCCCeEEEEEcCCCCEEEE
Q 004785          139 -GSCLKVLHGHRRTPWVVRFHPLNPT-IIASGSLDHEVRLWNA--STAECI--GS---RD-FYRPIASIAFHASGELLAV  208 (730)
Q Consensus       139 -g~~l~~l~gH~~~V~sVafSP~dg~-lLaSgS~DgtVrLWDl--~tg~~i--~~---l~-h~~~V~sVafSPdG~~LAs  208 (730)
                       ++... +..+....+.++|+| +++ ++++.+.++.|.+||+  .+++..  ..   +. .......++++++|++.++
T Consensus       138 ~g~~~~-~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva  215 (297)
T 3g4e_A          138 DHHVKK-YFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA  215 (297)
T ss_dssp             TSCEEE-EEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE
T ss_pred             CCCEEE-EeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE
Confidence             44333 333444578899999 665 5566677889999997  455432  11   11 2356789999999987666


Q ss_pred             EEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEEeeC
Q 004785          209 ASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAEVN  257 (730)
Q Consensus       209 gSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS-PdG~~Llatgsvw  257 (730)
                      ..+ +.|.+||..+++...   .+..+...+++++|. ||++.|.++....
T Consensus       216 ~~~~~~v~~~d~~tG~~~~---~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          216 CYNGGRVIRLDPVTGKRLQ---TVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EETTTEEEEECTTTCCEEE---EEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EcCCCEEEEEcCCCceEEE---EEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            654 459999998776543   344455789999998 8998887776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.57  E-value=7e-06  Score=89.13  Aligned_cols=170  Identities=12%  Similarity=0.070  Sum_probs=105.7

Q ss_pred             EEEecCCCEEEEEe----------CCCeEEEEeCCCCCCCCC-----------CCCeEEEEECCCCCEEEEEeC--CCeE
Q 004785           75 EAGRDARRGLASWV----------EAESLHHLRPKYCPLSPP-----------PRSTIAAAFSPDGKTLASTHG--DHTV  131 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs----------~DgsIrlWd~~t~~L~gH-----------~~~Vt~lafSPDG~~LaSgS~--DgtV  131 (730)
                      ++...+++.++...          .++.|.+||..+.+..+.           ......+.|+|||++|+++..  +..|
T Consensus        71 i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v  150 (373)
T 2mad_H           71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV  150 (373)
T ss_pred             eEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeE
Confidence            33444666666554          367899999876532210           123458999999999999874  5789


Q ss_pred             EEEECCCCeEEEE-EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE------------------------
Q 004785          132 KIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG------------------------  186 (730)
Q Consensus       132 rVWDl~tg~~l~~-l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~------------------------  186 (730)
                      .++| .+++.+.. +....    ++.+.|.+.+.+++.+.|+.+.+||. +++.+.                        
T Consensus       151 ~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          151 GLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             EEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence            9999 99998877 54221    13334433344455555555555555 433221                        


Q ss_pred             --------------------------Eec-----------CCCCeEEEEEcCCCCEEEEEEC-----------CeEEEEE
Q 004785          187 --------------------------SRD-----------FYRPIASIAFHASGELLAVASG-----------HKLYIWR  218 (730)
Q Consensus       187 --------------------------~l~-----------h~~~V~sVafSPdG~~LAsgSd-----------d~I~VWD  218 (730)
                                                .+.           .......++++||++.|+++.+           +.|.++|
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence                                      010           0112233778999998887652           3499999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +.+.+.+.   .+ ........+.|+|||++++.++
T Consensus       305 ~~t~~vv~---~i-~~g~~p~~i~~s~Dg~~~l~v~  336 (373)
T 2mad_H          305 GLVGQTSS---QI-SLGHDVDAISVAQDGGPDLYAL  336 (373)
T ss_pred             CCCCEEEE---EE-ECCCCcCeEEECCCCCeEEEEE
Confidence            98887644   22 3344689999999999444443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.55  E-value=3.9e-05  Score=83.26  Aligned_cols=125  Identities=10%  Similarity=-0.054  Sum_probs=86.6

Q ss_pred             eEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecC-------CC
Q 004785           92 SLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------RR  150 (730)
Q Consensus        92 sIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH-------~~  150 (730)
                      +|.+||..++++    ..-..+  .++|||||++|+.+.          .++.|.+||..+++.+..+...       ..
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~  125 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP  125 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCC
Confidence            778888877642    222222  899999999999886          3678999999999888776432       12


Q ss_pred             CcEEEEEccCCCCEEEEEeC--CCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEE-EEE-ECCeEEEEEcCCCcc
Q 004785          151 TPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELL-AVA-SGHKLYIWRYNMREE  224 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~L-Asg-Sdd~I~VWDl~t~~~  224 (730)
                      ....++|+| ++++++.+..  ++.|.++| .+++.+.. +.....   +.+.|+++.. ++. .++++.+||. +++.
T Consensus       126 ~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~  198 (373)
T 2mad_H          126 YSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGA  198 (373)
T ss_pred             CccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcE
Confidence            356799999 8888877764  57899999 99998877 665443   3445555422 222 2555777777 5543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.54  E-value=1e-05  Score=90.35  Aligned_cols=174  Identities=11%  Similarity=0.120  Sum_probs=118.2

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC--CCCC-------------CCCeEEEEECCCCCEEEEEeCC------CeEEEEECC
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP--LSPP-------------PRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQ  137 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~--L~gH-------------~~~Vt~lafSPDG~~LaSgS~D------gtVrVWDl~  137 (730)
                      +.+..++.+..+.+|.++|..+..  .+-+             ...-..+..+||| +++++..+      +.|.++|.+
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            445556678888999999986541  1100             1123456788999 77776655      789999999


Q ss_pred             CCeEEEEEecCCC---CcEEEEEccCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEEecCC---C
Q 004785          138 TGSCLKVLHGHRR---TPWVVRFHPLNPTIIASGS-------------------LDHEVRLWNASTAECIGSRDFY---R  192 (730)
Q Consensus       138 tg~~l~~l~gH~~---~V~sVafSP~dg~lLaSgS-------------------~DgtVrLWDl~tg~~i~~l~h~---~  192 (730)
                      +++.+..+....+   .-+.+.|+| +++.+++..                   .+.+|.+||+.+++.+..+...   .
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999988863322   234588899 888888874                   3789999999999888877653   2


Q ss_pred             CeEEEEE--cCCCCEEEEEEC-----C--eEEEEEcCCCccccCCeEE-------ec-----------CCCCeEEEEEcc
Q 004785          193 PIASIAF--HASGELLAVASG-----H--KLYIWRYNMREETSSPRIV-------LR-----------TRRSLRAVHFHP  245 (730)
Q Consensus       193 ~V~sVaf--SPdG~~LAsgSd-----d--~I~VWDl~t~~~~~~~~~l-------~~-----------h~~~V~sVaFSP  245 (730)
                      ....+.|  +|+|+++++++.     .  .|.+|..+.++... ...+       ..           .......+.+|+
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~-~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA-EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE-EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE-EEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            3445656  999998888764     3  37776665432111 0000       00           024578899999


Q ss_pred             CCCeEEEEEe
Q 004785          246 HAAPLLLTAE  255 (730)
Q Consensus       246 dG~~Llatgs  255 (730)
                      ||++|.++..
T Consensus       331 DGrfLYVSnr  340 (462)
T 2ece_A          331 DDKFLYLSLW  340 (462)
T ss_dssp             TSCEEEEEET
T ss_pred             CCCEEEEEeC
Confidence            9998887754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.47  E-value=7.2e-06  Score=90.01  Aligned_cols=171  Identities=9%  Similarity=-0.025  Sum_probs=112.3

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEEEEeCCC--eEEEEECCCCeEEEEE----
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVL----  145 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l----  145 (730)
                      ++....+..+++...++.|+.||.+++.+.   ....... ++|+++++.|+++..++  .|.+||...+.....+    
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~  214 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLG  214 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECC
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeecc
Confidence            333344555555556789999999876321   1122233 99999999999988765  8999998776554444    


Q ss_pred             ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE----e-cCCCCe--EEEEEcCCCCEEEEEE--CCeEEE
Q 004785          146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS----R-DFYRPI--ASIAFHASGELLAVAS--GHKLYI  216 (730)
Q Consensus       146 ~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~----l-~h~~~V--~sVafSPdG~~LAsgS--dd~I~V  216 (730)
                      ......+.+++++|+++.+++ +..++.|+.||..++.....    . ......  ..++|+|++..|+++.  .+.|+.
T Consensus       215 ~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~  293 (409)
T 3hrp_A          215 STFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYK  293 (409)
T ss_dssp             TTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             chhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEE
Confidence            224566889999994455444 67788999999987764332    1 112222  3999999766666665  345999


Q ss_pred             EEcCCCccccCCeEEecC---------------CCCeEEEEEccCCCeEEE
Q 004785          217 WRYNMREETSSPRIVLRT---------------RRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       217 WDl~t~~~~~~~~~l~~h---------------~~~V~sVaFSPdG~~Lla  252 (730)
                      ||......     .+.++               -.....++|+++|+.+++
T Consensus       294 ~~~~g~~~-----~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva  339 (409)
T 3hrp_A          294 ITPDGECE-----WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV  339 (409)
T ss_dssp             ECTTCCEE-----EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred             EecCCCEE-----EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence            98764311     22222               235789999999994444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.46  E-value=1.6e-05  Score=83.81  Aligned_cols=165  Identities=13%  Similarity=0.075  Sum_probs=107.4

Q ss_pred             EEEEEeCCCeEEEEeCCCCCCC---C----C-CCCeEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEEecC
Q 004785           83 GLASWVEAESLHHLRPKYCPLS---P----P-PRSTIAAAFSPDGKTLASTHG------DHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~~L~---g----H-~~~Vt~lafSPDG~~LaSgS~------DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      .++.+..+ .|.+||..++++.   .    . ...+.+++++++|+++++...      .+.|..+|  +++.. .+..+
T Consensus       102 ~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~  177 (326)
T 2ghs_A          102 KQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD  177 (326)
T ss_dssp             EEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred             eEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence            34444444 4889998766421   1    1 235889999999997765542      24566666  56543 33333


Q ss_pred             CCCcEEEEEccCCCCE-EEEEeCCCcEEEEECC--CC-eE-----EEEec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEE
Q 004785          149 RRTPWVVRFHPLNPTI-IASGSLDHEVRLWNAS--TA-EC-----IGSRD-FYRPIASIAFHASGELLAVAS-GHKLYIW  217 (730)
Q Consensus       149 ~~~V~sVafSP~dg~l-LaSgS~DgtVrLWDl~--tg-~~-----i~~l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VW  217 (730)
                      ......++|+| +++. +++.+.++.|.+||+.  ++ +.     ...+. .......++++++|+++++.. +++|.+|
T Consensus       178 ~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          178 ISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             ESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             CcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence            34577899999 6664 4555667899999986  55 31     22222 234578899999998766655 4669999


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEEee
Q 004785          218 RYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAEV  256 (730)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFS-PdG~~Llatgsv  256 (730)
                      |. .++...   .+..+...+.+++|+ ++++.|+++...
T Consensus       257 d~-~g~~~~---~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          257 DT-DGNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             CT-TCCEEE---EEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CC-CCCEEE---EEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            98 344322   334455679999998 898877666543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.46  E-value=3.9e-05  Score=77.38  Aligned_cols=167  Identities=10%  Similarity=0.013  Sum_probs=115.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~~~V~  153 (730)
                      .+...++...++.|.+||.. ++     +..+...+.+++++++|+++++...++.|.+||.. ++... .+......+.
T Consensus        30 ~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~  107 (300)
T 2qc5_A           30 DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPY  107 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCc
Confidence            34433343457888889877 43     22344679999999999888777668899999987 65432 2222446789


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RD-FYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~-h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~  230 (730)
                      .+++.+ +++++++...++.|..||.. ++.... +. ....+..++++++|+++++.. ++.|.+||. +++...  ..
T Consensus       108 ~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~  182 (300)
T 2qc5_A          108 GITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE--YP  182 (300)
T ss_dssp             EEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EE
T ss_pred             cceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE--ee
Confidence            999998 88888887778899999987 655432 22 346789999999999555544 456999998 443321  11


Q ss_pred             EecCCCCeEEEEEccCCCeEEEE
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      .......+..++++++|..+++.
T Consensus       183 ~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          183 LPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCCCCCcceEEECCCCCEEEEc
Confidence            22334578999999999855543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.44  E-value=4.8e-05  Score=76.67  Aligned_cols=167  Identities=10%  Similarity=0.027  Sum_probs=115.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE-EecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~-l~gH~~~V~  153 (730)
                      .+...++...++.|..||.. ++     +......+.+++++++|+++++...++.|..||.. ++.... +......+.
T Consensus        72 ~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           72 LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA  149 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence            34444444446789999877 42     22234678999999999888877768899999987 654422 333456788


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~  230 (730)
                      .+++.+ +++++++...++.|..||. +++.....  .....+..++++++|+++++... +.|.+||. +++...  ..
T Consensus       150 ~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--~~  224 (300)
T 2qc5_A          150 FITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE--YD  224 (300)
T ss_dssp             EEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE--EE
T ss_pred             eEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE--EE
Confidence            999999 7787777777889999998 56554432  23456889999999986665543 45999998 333211  11


Q ss_pred             EecCCCCeEEEEEccCCCeEEEE
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      .......+.+++++++|+.+++.
T Consensus       225 ~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          225 IPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEE
T ss_pred             CCCCCCCceEEEECCCCCEEEec
Confidence            22345678999999999855444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.43  E-value=6.3e-06  Score=87.45  Aligned_cols=148  Identities=9%  Similarity=-0.019  Sum_probs=101.2

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecC------CCCcEEEEEccCCCCEEEEEe---C
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGH------RRTPWVVRFHPLNPTIIASGS---L  170 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH------~~~V~sVafSP~dg~lLaSgS---~  170 (730)
                      +|...+.+++|+++|+++++-..     +..|.+||+.+++.++.+...      ...+..++++++++.++++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            46678999999999887665544     579999999999977777532      234688999984556666665   6


Q ss_pred             CCcEEEEECCCCeEEEEecC------------------------------CCCeEEEEEcCCCCEEEEEECC--eEEEEE
Q 004785          171 DHEVRLWNASTAECIGSRDF------------------------------YRPIASIAFHASGELLAVASGH--KLYIWR  218 (730)
Q Consensus       171 DgtVrLWDl~tg~~i~~l~h------------------------------~~~V~sVafSPdG~~LAsgSdd--~I~VWD  218 (730)
                      ++.|.+||+.+++....+..                              ...++.++|+|||+.|+++...  .|+.++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            88999999998876654421                              0236889999999999888743  366665


Q ss_pred             cCC---Cc----cccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          219 YNM---RE----ETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       219 l~t---~~----~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      ...   +.    .........++......++++++|..+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va  264 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG  264 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE
Confidence            421   11    00001122234445678999999985554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.43  E-value=1.3e-05  Score=88.11  Aligned_cols=241  Identities=13%  Similarity=0.080  Sum_probs=141.9

Q ss_pred             EEEecCCCEEEEEe----------CCCeEEEEeCCCCCCCC-----C------CCCeEEEEECCCCCEEEEEeC--CCeE
Q 004785           75 EAGRDARRGLASWV----------EAESLHHLRPKYCPLSP-----P------PRSTIAAAFSPDGKTLASTHG--DHTV  131 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs----------~DgsIrlWd~~t~~L~g-----H------~~~Vt~lafSPDG~~LaSgS~--DgtV  131 (730)
                      ++...+++.++...          .++.|.+||..+.+...     .      ......+.|+|||++|+++..  ++.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            44445566565443          46789999998874221     1      124557999999999998864  6899


Q ss_pred             EEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCC-CeEEEEec-C----CCCe-EEEEEc-CCC
Q 004785          132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIGSRD-F----YRPI-ASIAFH-ASG  203 (730)
Q Consensus       132 rVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~i~~l~-h----~~~V-~sVafS-PdG  203 (730)
                      .++|+.+++.+..+....    +..+.|.+.+.+++.+.||++.+.++.+ ++...... .    ...+ ....|. ++|
T Consensus       163 sVID~~t~~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEECCCCcEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC
Confidence            999999999998886422    1223353677888889999999999986 55432211 1    1222 224664 788


Q ss_pred             CEEEEEECCeEEEEEcCCCccccCCeEE-ec--------CCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCc
Q 004785          204 ELLAVASGHKLYIWRYNMREETSSPRIV-LR--------TRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGY  274 (730)
Q Consensus       204 ~~LAsgSdd~I~VWDl~t~~~~~~~~~l-~~--------h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~  274 (730)
                      +++++..++.|++.|+............ ..        .......++++++++++..+.....-.+             
T Consensus       239 ~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~-------------  305 (386)
T 3sjl_D          239 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR-------------  305 (386)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC-------------
T ss_pred             cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc-------------
Confidence            7777666677999999765421101110 00        1123345777999988877654221110             


Q ss_pred             ccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCC-EEEEEecCCCCCcccceeecCCC
Q 004785          275 WRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDE-RISLQHTEHDSGATRTQQSLRSS  339 (730)
Q Consensus       275 ~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~-rI~~~~~~~dsgs~~~~~~~~ss  339 (730)
                      .+.+...|.+.|..+.+.......    .-+.+.+.|++|++ ++++. +.  ...++++.|..+.
T Consensus       306 hk~~~~~V~viD~~t~kv~~~i~v----g~~~~~lavs~D~~~~ly~t-n~--~~~~VsViD~~t~  364 (386)
T 3sjl_D          306 HKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYAL-ST--GDKTLYIHDAESG  364 (386)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECSSSSCEEEEE-ET--TTTEEEEEETTTC
T ss_pred             cCCCCCEEEEEECCCCeEEEEEEC----CCCcceEEECCCCCeEEEEE-cC--CCCeEEEEECCCC
Confidence            011223455555444433222211    11456899999998 55542 21  2334556665533

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.42  E-value=1.4e-06  Score=95.73  Aligned_cols=120  Identities=12%  Similarity=-0.005  Sum_probs=96.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ++..|+.+ .++.|++||....    .+..|...|.++.+.+.  .+++++.||.|.+||+.++....    +...|.++
T Consensus        96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v  168 (388)
T 1xip_A           96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF  168 (388)
T ss_dssp             ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred             CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence            56777777 8899999998653    24456777888888764  38889999999999999887643    34579999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeE--EEEe----------cCCCCeEEEEEcCCCCEEEEE
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAEC--IGSR----------DFYRPIASIAFHASGELLAVA  209 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~--i~~l----------~h~~~V~sVafSPdG~~LAsg  209 (730)
                      +|+| ++  ++.|..||++++|+...++.  .+.+          .|...|.+|.|.+++++|++=
T Consensus       169 ~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          169 DVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            9999 66  67899999999999988775  4445          256789999999999988754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.40  E-value=1.7e-05  Score=86.97  Aligned_cols=168  Identities=10%  Similarity=-0.046  Sum_probs=111.5

Q ss_pred             cCCCEEEEEeCCC--eEEEEeCCCCC----C----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE----
Q 004785           79 DARRGLASWVEAE--SLHHLRPKYCP----L----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV----  144 (730)
Q Consensus        79 d~g~~L~Sgs~Dg--sIrlWd~~t~~----L----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~----  144 (730)
                      ..+..|+....++  .|..|+.....    +    ......+.+++++|++..|+.+..++.|+.||..++.....    
T Consensus       180 ~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~  259 (409)
T 3hrp_A          180 KDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE  259 (409)
T ss_dssp             TTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC
T ss_pred             cCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc
Confidence            4455666666654  78888876432    1    22456688999999555566677788999999988764332    


Q ss_pred             EecCCCCc-E-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC---------------CCeEEEEEcCCCCEEE
Q 004785          145 LHGHRRTP-W-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---------------RPIASIAFHASGELLA  207 (730)
Q Consensus       145 l~gH~~~V-~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~---------------~~V~sVafSPdG~~LA  207 (730)
                      ..++...- . .++|+|+++.++++-..++.|+.||.... .....+..               .....++|+|+|++++
T Consensus       260 ~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyv  338 (409)
T 3hrp_A          260 LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYI  338 (409)
T ss_dssp             CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEE
T ss_pred             ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEE
Confidence            22333322 3 89999966777777778899999998643 33323321               3478999999999555


Q ss_pred             EEE-C-CeEEEEEcCCCccccCCeEEecC---------------CCCeEEEEEccCCCeEE
Q 004785          208 VAS-G-HKLYIWRYNMREETSSPRIVLRT---------------RRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       208 sgS-d-d~I~VWDl~t~~~~~~~~~l~~h---------------~~~V~sVaFSPdG~~Ll  251 (730)
                      +-+ . +.|++||+.++...    .+.++               -.....++++++|..++
T Consensus       339 ad~~~~~~I~~~~~~~G~v~----~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyV  395 (409)
T 3hrp_A          339 VDGFKGYCLRKLDILDGYVS----TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWI  395 (409)
T ss_dssp             EETTTTCEEEEEETTTTEEE----EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEE
T ss_pred             EeCCCCCEEEEEECCCCEEE----EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEE
Confidence            554 3 34999997766532    22222               24578999999976444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.38  E-value=3.6e-05  Score=85.57  Aligned_cols=97  Identities=10%  Similarity=0.010  Sum_probs=74.7

Q ss_pred             CeEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecC-------C
Q 004785           91 ESLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------R  149 (730)
Q Consensus        91 gsIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH-------~  149 (730)
                      +.|.++|..+.++.    --..+  .++++|||++|+++.          .++.|.++|..+++.+..+.--       .
T Consensus        99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g  176 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVG  176 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccC
Confidence            68999998876422    11223  799999999998886          3678999999999998887532       2


Q ss_pred             CCcEEEEEccCCCCEEEEEeC--CCcEEEEECCCCeEEEEecC
Q 004785          150 RTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSRDF  190 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~i~~l~h  190 (730)
                      .....+.|+| ++++++.+..  +++|.+.|+.+++.+..+..
T Consensus       177 ~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          177 TYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            3456799999 8887777664  67899999999998877654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.25  E-value=3.1e-05  Score=80.76  Aligned_cols=171  Identities=8%  Similarity=0.010  Sum_probs=117.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCCCCC--CCCeE--EEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPLSPP--PRSTI--AAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L~gH--~~~Vt--~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      ++...++.+.++.|+.+|++++++...  .....  .+++  +++.|+.. -.++.+.+||.++.+.+..+..- ..-+.
T Consensus        64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwG  140 (268)
T 3nok_A           64 QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWG  140 (268)
T ss_dssp             TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCC
T ss_pred             CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeE
Confidence            566666777888999999998854321  22233  3555  45555554 45889999999999999998743 33345


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---C---CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCcccc
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---Y---RPIASIAFHASGELLAVAS--GHKLYIWRYNMREETS  226 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h---~---~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~  226 (730)
                      +++   +++.|+.+..++.|.++|..+.+.+..+.-   .   ..++.+.|. +|+ |++..  ++.|.+.|..+++...
T Consensus       141 Lt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          141 LCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVG  215 (268)
T ss_dssp             EEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEE
T ss_pred             Eec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEE
Confidence            554   445555556688999999999988877542   1   245677887 775 44454  4569999999987644


Q ss_pred             CCeEE----------ecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004785          227 SPRIV----------LRTRRSLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       227 ~~~~l----------~~h~~~V~sVaFSPdG~~Llatgsvwd  258 (730)
                      .....          .....-.+.|+|+|+++.|+.|++.|.
T Consensus       216 ~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp  257 (268)
T 3nok_A          216 VIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP  257 (268)
T ss_dssp             EEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred             EEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence            11110          011245689999999999999999885

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.25  E-value=2.6e-05  Score=86.67  Aligned_cols=133  Identities=11%  Similarity=-0.029  Sum_probs=96.0

Q ss_pred             CCCCEEEEEeCC-----CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------CCCcEEEEECCC
Q 004785          117 PDGKTLASTHGD-----HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLWNAST  181 (730)
Q Consensus       117 PDG~~LaSgS~D-----gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS----------~DgtVrLWDl~t  181 (730)
                      ++++.+++....     +.|.++|..+++.+..+..-..+  .++++| +++.++.+.          .++.|.++|..+
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t  158 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVT  158 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence            478877776553     69999999999999998755554  899999 666555554          467899999999


Q ss_pred             CeEEEEecCC--------CCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecC------CCCeEEEEEc
Q 004785          182 AECIGSRDFY--------RPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRT------RRSLRAVHFH  244 (730)
Q Consensus       182 g~~i~~l~h~--------~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h------~~~V~sVaFS  244 (730)
                      ++.+..+...        .....+.|+|||++|+++..   +.|.+.|+.+.+.....  ....      ...-..+.++
T Consensus       159 ~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I--~v~g~~~~~p~g~~~~v~~~  236 (426)
T 3c75_H          159 FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRML--DVPDCYHIFPASPTVFYMNC  236 (426)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE--ECCSEEEEEEEETTEEEEEE
T ss_pred             CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEE--EcCCceeeccCCCcEEEEEc
Confidence            9988776432        34567899999999999872   45999999998765411  1110      0112346788


Q ss_pred             cCCCeEEEEE
Q 004785          245 PHAAPLLLTA  254 (730)
Q Consensus       245 PdG~~Llatg  254 (730)
                      +||+.++...
T Consensus       237 ~dG~~~~V~~  246 (426)
T 3c75_H          237 RDGSLARVDF  246 (426)
T ss_dssp             TTSSEEEEEC
T ss_pred             CCCCEEEEEC
Confidence            8888666554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.22  E-value=4.3e-05  Score=80.97  Aligned_cols=163  Identities=9%  Similarity=-0.029  Sum_probs=104.4

Q ss_pred             CCeEEEEeCCCCCC----------CCCCCCeEEEEECCCCCEE-EEEe---CCCeEEEEECCCCeEEEEEecCC------
Q 004785           90 AESLHHLRPKYCPL----------SPPPRSTIAAAFSPDGKTL-ASTH---GDHTVKIIDCQTGSCLKVLHGHR------  149 (730)
Q Consensus        90 DgsIrlWd~~t~~L----------~gH~~~Vt~lafSPDG~~L-aSgS---~DgtVrVWDl~tg~~l~~l~gH~------  149 (730)
                      +.+|.+||.+++++          ..+...+..+++++++..+ ++-.   .++.|.+||..+++..+.+.+|.      
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~  171 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED  171 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence            46888888876631          1233457899999865454 4444   57899999999888776664431      


Q ss_pred             -----------------------CCcEEEEEccCCCCEEEEEeCCC-cEEEEECC---CCe--------EEEEecCCCCe
Q 004785          150 -----------------------RTPWVVRFHPLNPTIIASGSLDH-EVRLWNAS---TAE--------CIGSRDFYRPI  194 (730)
Q Consensus       150 -----------------------~~V~sVafSP~dg~lLaSgS~Dg-tVrLWDl~---tg~--------~i~~l~h~~~V  194 (730)
                                             ..+..|+|+| +++.++.+..++ .|..+|..   .+.        .+....+....
T Consensus       172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p  250 (343)
T 2qe8_A          172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC  250 (343)
T ss_dssp             CCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC
T ss_pred             cceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC
Confidence                                   1257899999 777777776655 45444431   111        01122333456


Q ss_pred             EEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          195 ASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       195 ~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..++++++|+++++.. ++.|.+||..+++...  .....+...+..++|.++|+.++++..
T Consensus       251 dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~--~~~~~~~~~p~~va~~~~g~l~v~~~~  310 (343)
T 2qe8_A          251 DGISIDKDHNIYVGDLAHSAIGVITSADRAYKL--LVTDEKLSWTDSFNFGSDGYLYFDCNQ  310 (343)
T ss_dssp             SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEE--EEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred             ceEEECCCCCEEEEccCCCeEEEEECCCCCEEE--EEECCceecCCeeEECCCCcEEEEeCc
Confidence            6799999998777766 4569999984454211  111122456899999999886665553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.21  E-value=1.8e-05  Score=82.04  Aligned_cols=139  Identities=9%  Similarity=0.019  Sum_probs=99.4

Q ss_pred             CCCeEEEEECCCCC-EEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785          107 PRSTIAAAFSPDGK-TLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (730)
Q Consensus       107 ~~~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i  185 (730)
                      ........|+++|+ ++++...++.|..|+. +++ ...+..+...+..+++++ +++++++...++.|.+||.. ++..
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~  119 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAH  119 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEE
Confidence            34567899999998 5667777899999998 555 455666777899999999 88877776667889999986 6543


Q ss_pred             EEecC-----CCCeEEEEEcCCCCEEEE----EE--------------CCeEEEEEcCCCccccCCeEEecCCCCeEEEE
Q 004785          186 GSRDF-----YRPIASIAFHASGELLAV----AS--------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVH  242 (730)
Q Consensus       186 ~~l~h-----~~~V~sVafSPdG~~LAs----gS--------------dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVa  242 (730)
                      .....     ...++.++++|+|+++++    |.              .+.|+.||..+++...    +. .......++
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~----~~-~~~~p~gl~  194 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR----MA-DLDHPNGLA  194 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE----EE-EESSEEEEE
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE----Ee-cCCCCcceE
Confidence            33221     234678999999998876    32              1237777776655322    22 334678899


Q ss_pred             EccCCCeEEEEE
Q 004785          243 FHPHAAPLLLTA  254 (730)
Q Consensus       243 FSPdG~~Llatg  254 (730)
                      |+||++.|+.+.
T Consensus       195 ~spdg~~lyv~~  206 (305)
T 3dr2_A          195 FSPDEQTLYVSQ  206 (305)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            999999776654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.20  E-value=1.1e-05  Score=88.49  Aligned_cols=138  Identities=11%  Similarity=0.025  Sum_probs=98.7

Q ss_pred             EEECCCCCEEEEEeC-----CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------CCCcEEEE
Q 004785          113 AAFSPDGKTLASTHG-----DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLW  177 (730)
Q Consensus       113 lafSPDG~~LaSgS~-----DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS----------~DgtVrLW  177 (730)
                      ....||++.++....     ++.|.++|..+++.+..+..-..+ . ++++| ++++++.++          .++.|.+|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~sp-DG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECC-CCCEEEEEcccccccccCCCCCEEEEE
Confidence            455789999888865     679999999999999998765554 4 99999 666665554          46789999


Q ss_pred             ECCCCeEEEEecCC--------CCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeEEecC-----CCCeEEE
Q 004785          178 NASTAECIGSRDFY--------RPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRIVLRT-----RRSLRAV  241 (730)
Q Consensus       178 Dl~tg~~i~~l~h~--------~~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~~~~~l~~h-----~~~V~sV  241 (730)
                      |..+++.+..+...        .....++|+|||++|+++.   ++.|.++|+.+.+...... ..+.     ...-.-+
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g~~~~~P~g~~~~~  193 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTFF  193 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEE
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCCcceeecCCCceeE
Confidence            99999988876422        2456799999999999886   2459999999987654110 0000     0011124


Q ss_pred             EEccCCCeEEEEE
Q 004785          242 HFHPHAAPLLLTA  254 (730)
Q Consensus       242 aFSPdG~~Llatg  254 (730)
                      ..++||+.++...
T Consensus       194 ~~~~DG~~~~v~~  206 (386)
T 3sjl_D          194 MHCRDGSLAKVAF  206 (386)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EECCCCCEEEEEC
Confidence            6778887655544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.20  E-value=3.8e-05  Score=85.73  Aligned_cols=164  Identities=10%  Similarity=0.020  Sum_probs=109.0

Q ss_pred             CeEEEEeCCCCCCC------CCC-CCeEEEEECCCCCEEEEEe-------------------CCCeEEEEECCCCeEEEE
Q 004785           91 ESLHHLRPKYCPLS------PPP-RSTIAAAFSPDGKTLASTH-------------------GDHTVKIIDCQTGSCLKV  144 (730)
Q Consensus        91 gsIrlWd~~t~~L~------gH~-~~Vt~lafSPDG~~LaSgS-------------------~DgtVrVWDl~tg~~l~~  144 (730)
                      +.|.++|.++.++.      ... .--+.+-|+|+++.+++..                   .+.+|.+||+.+++.+..
T Consensus       164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t  243 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS  243 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence            67899998876322      122 2244688899999888884                   368999999999988888


Q ss_pred             EecC-C-CCcEEEEE--ccCCCCEEEEEe------CCCcEEEEECCCCeEE--EEe--cC-----------------CCC
Q 004785          145 LHGH-R-RTPWVVRF--HPLNPTIIASGS------LDHEVRLWNASTAECI--GSR--DF-----------------YRP  193 (730)
Q Consensus       145 l~gH-~-~~V~sVaf--SP~dg~lLaSgS------~DgtVrLWDl~tg~~i--~~l--~h-----------------~~~  193 (730)
                      +..- . .....|.|  +| ++++++.++      .+++|.+|....++..  +.+  ..                 ...
T Consensus       244 I~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~  322 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL  322 (462)
T ss_dssp             EESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred             EecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence            7642 1 23455666  99 666665554      6778888766555321  111  10                 245


Q ss_pred             eEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEE-ecCC-------------CCeEEEEEccCCCeEEEEEe
Q 004785          194 IASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIV-LRTR-------------RSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       194 V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l-~~h~-------------~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...|.+||||++|+++..  +.|.+||+...........+ .+..             ...+.+.++|||++|+++.+
T Consensus       323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence            678999999999999983  45999998643221101111 1100             13588999999999888875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.19  E-value=3.2e-05  Score=80.48  Aligned_cols=173  Identities=8%  Similarity=0.023  Sum_probs=112.8

Q ss_pred             CCCEEEEEeCCC--eEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAE--SLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~Dg--sIrlWd~~t~~L~g---H~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ++....+.+.++  .|+.+|++++++..   -..........++++.|+... .++.+.+||.++.+.+..+.... .=+
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~  130 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGW  130 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-Cce
Confidence            345555655555  89999999885321   112333322333456666655 48899999999999999987432 223


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC---C---CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF---Y---RPIASIAFHASGELLAVAS--GHKLYIWRYNMREET  225 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h---~---~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~  225 (730)
                      .++  +++..++++ ..++.|.++|..+.+.+..+.-   .   ..++.+.|. +|+ |++..  ++.|.+.|..+++..
T Consensus       131 glt--~dg~~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          131 GLT--HNDQYLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             CEE--ECSSCEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEE
T ss_pred             EEe--cCCCEEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEE
Confidence            444  424444444 4578899999999988777542   1   345667886 675 44454  456999999998864


Q ss_pred             cCCeE--E-------ecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004785          226 SSPRI--V-------LRTRRSLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       226 ~~~~~--l-------~~h~~~V~sVaFSPdG~~Llatgsvwd  258 (730)
                      .....  +       .....-.+.|+|+|+++.|+.+++.|.
T Consensus       206 ~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          206 GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            41111  0       011235689999999999999999885

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.14  E-value=7.4e-05  Score=77.96  Aligned_cols=168  Identities=8%  Similarity=-0.020  Sum_probs=111.7

Q ss_pred             EEEEEe---CCCeEEEEeCCCCCCC-----CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           83 GLASWV---EAESLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        83 ~L~Sgs---~DgsIrlWd~~t~~L~-----gH~~~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      .|+...   .+++|+.+|..++++.     +.......+++.  ++.|+.+.. ++.|.++|..+++.+..+..-...  
T Consensus        33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--  108 (266)
T 2iwa_A           33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--  108 (266)
T ss_dssp             EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--
T ss_pred             eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--
Confidence            455443   2578999999987422     111122345554  556666554 789999999999999888632122  


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC------CCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS--GHKLYIWRYNMREET  225 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~------~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~  225 (730)
                      ...+++++..+++ +..+++|.++|..+.+.+..+.-.      ...+.+.|. +|+ |++..  ++.|.+.|..+++..
T Consensus       109 g~glt~Dg~~l~v-s~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg~V~  185 (266)
T 2iwa_A          109 GWGLATDGKILYG-SDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDGTLL  185 (266)
T ss_dssp             CCEEEECSSSEEE-ECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTCCEE
T ss_pred             eEEEEECCCEEEE-ECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCCcEE
Confidence            2345563444554 456889999999998887775422      246788888 774 55554  456999999998865


Q ss_pred             cCCeEEec-----------CCCCeEEEEEccCCCeEEEEEeeCC
Q 004785          226 SSPRIVLR-----------TRRSLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       226 ~~~~~l~~-----------h~~~V~sVaFSPdG~~Llatgsvwd  258 (730)
                      ... .+.+           .......++|+|+++++++++..|+
T Consensus       186 ~~I-~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~  228 (266)
T 2iwa_A          186 GWI-LLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP  228 (266)
T ss_dssp             EEE-ECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             EEE-ECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence            411 1111           0135689999999999999998774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.08  E-value=4.4e-05  Score=87.77  Aligned_cols=172  Identities=8%  Similarity=-0.059  Sum_probs=121.1

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCCCC-----CCCCCeEEEEE-C-CCCCEEEEEe------------------CCCeEEE
Q 004785           80 ARRGLA-SWVEAESLHHLRPKYCPLS-----PPPRSTIAAAF-S-PDGKTLASTH------------------GDHTVKI  133 (730)
Q Consensus        80 ~g~~L~-Sgs~DgsIrlWd~~t~~L~-----gH~~~Vt~laf-S-PDG~~LaSgS------------------~DgtVrV  133 (730)
                      +++.++ +-..+..|.+.|+++.+..     ........+++ + |++++++.++                  .++.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            344444 4445667999999886311     22345889998 5 8999998885                  2568999


Q ss_pred             EECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--------------------------------------cEE
Q 004785          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--------------------------------------EVR  175 (730)
Q Consensus       134 WDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg--------------------------------------tVr  175 (730)
                      +|.++.+.+.++.--. ....++++| +++++++.+.+.                                      .|.
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999999888876433 456789999 788887777543                                      477


Q ss_pred             EEECCC--CeE-EEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc--------cCCeEEecCCCCeEEEE
Q 004785          176 LWNAST--AEC-IGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREET--------SSPRIVLRTRRSLRAVH  242 (730)
Q Consensus       176 LWDl~t--g~~-i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~--------~~~~~l~~h~~~V~sVa  242 (730)
                      +.|.++  ++. +..+.......++.++|||+++++++  ++.|.++|+.+.+..        ........-....+.++
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            888887  544 45555555677899999999999988  456999999865310        00111223356789999


Q ss_pred             EccCCCeEEEEE
Q 004785          243 FHPHAAPLLLTA  254 (730)
Q Consensus       243 FSPdG~~Llatg  254 (730)
                      |+|+| ++.++.
T Consensus       338 F~~dG-~aY~t~  348 (595)
T 1fwx_A          338 FDGRG-NAYTSL  348 (595)
T ss_dssp             ECTTS-EEEEEE
T ss_pred             ECCCC-eEEEEE
Confidence            99999 665554

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.08  E-value=2.6e-07  Score=99.94  Aligned_cols=139  Identities=12%  Similarity=0.016  Sum_probs=75.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC-cE-
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT-PW-  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~-V~-  153 (730)
                      .+..++.++.|+.|..||.+++++    ..  +.+.+..+..+++.+++++.|+.|+.||.++|+.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567888999999999999988742    22  44555556667888888889999999999999887766543211 10 


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccc
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREET  225 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~  225 (730)
                      ...+.  .+..+++++.|+.|+.||..+|+.+..+....   ...++|++..|++++. +.|+.||.++++..
T Consensus        86 sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           86 SPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             CceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence            01111  34567788889999999999999887765433   2456778888888874 55999999988754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.07  E-value=0.00019  Score=73.96  Aligned_cols=174  Identities=14%  Similarity=0.096  Sum_probs=112.3

Q ss_pred             CCCEEEEEeCC--CeEEEEeCCCCCCCC---CCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEA--ESLHHLRPKYCPLSP---PPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~D--gsIrlWd~~t~~L~g---H~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ++....+.+..  ..|+.+|.+++++..   -...........+++.|+.. -.++.+.+||.++.+.+..+.... .-+
T Consensus        30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gw  108 (243)
T 3mbr_X           30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGW  108 (243)
T ss_dssp             TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-Cce
Confidence            34444455554  489999999885321   11222222223335555554 458899999999999999987433 234


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC------CCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcccc
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY------RPIASIAFHASGELLAVAS-GHKLYIWRYNMREETS  226 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~------~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~  226 (730)
                      .++  ++++.+++| ..++.|.++|..+.+.+..+.-.      ..++.+.|. +|+..+... ++.|.+.|..+++...
T Consensus       109 glt--~dg~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          109 ALT--SDDSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVA  184 (243)
T ss_dssp             EEE--ECSSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred             EEe--eCCCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEE
Confidence            555  434455555 55889999999999887775421      355677776 666443332 5669999999987644


Q ss_pred             CCeE--E--------ecCCCCeEEEEEccCCCeEEEEEeeCC
Q 004785          227 SPRI--V--------LRTRRSLRAVHFHPHAAPLLLTAEVND  258 (730)
Q Consensus       227 ~~~~--l--------~~h~~~V~sVaFSPdG~~Llatgsvwd  258 (730)
                      ....  +        .....-.+.|+|+|+++.|+.+++.|.
T Consensus       185 ~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp  226 (243)
T 3mbr_X          185 WIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP  226 (243)
T ss_dssp             EEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred             EEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            1110  0        011235689999999999999999885

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.06  E-value=8.4e-05  Score=87.01  Aligned_cols=160  Identities=13%  Similarity=0.140  Sum_probs=110.2

Q ss_pred             eEEEEeCCCCCC------CCCC-------CCeEEEEECCCC---CEEEEEeCCCeEEEEECCCCeEEEEEecCCCC----
Q 004785           92 SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT----  151 (730)
Q Consensus        92 sIrlWd~~t~~L------~gH~-------~~Vt~lafSPDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~----  151 (730)
                      +|..+|.+++++      ..|.       .....+....||   +.|+.++.+|.|+++|.++|+.+..++.....    
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            588888887742      2231       223334444477   67899999999999999999988766422100    


Q ss_pred             -------c------------------------EEEEEccCCCCEEEEEeC------------------------------
Q 004785          152 -------P------------------------WVVRFHPLNPTIIASGSL------------------------------  170 (730)
Q Consensus       152 -------V------------------------~sVafSP~dg~lLaSgS~------------------------------  170 (730)
                             +                        ..++|+| +..+++....                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC-CCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                   0                        1478899 6666665432                              


Q ss_pred             -------------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCC
Q 004785          171 -------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRR  236 (730)
Q Consensus       171 -------------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~  236 (730)
                                   .+.|..||+.+++.+..+.+...+....+..+|.++++++ ++.+++||..+++.+.  .....+..
T Consensus       443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw--~~~~~~~~  520 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW--EAPTGTGV  520 (677)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EEECSSCC
T ss_pred             ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee--eeeCCCCc
Confidence                         2789999999999998887766666667778888888887 4569999999998754  12223333


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004785          237 SLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       237 ~V~sVaFSPdG~~Llatg  254 (730)
                      .-.-+.|..+|+.+++..
T Consensus       521 ~~~p~~y~~~G~~~v~~~  538 (677)
T 1kb0_A          521 VAAPSTYMVDGRQYVSVA  538 (677)
T ss_dssp             CSCCEEEEETTEEEEEEE
T ss_pred             ccCCEEEEeCCEEEEEEe
Confidence            334556778998666554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.06  E-value=4.3e-05  Score=83.27  Aligned_cols=87  Identities=11%  Similarity=-0.097  Sum_probs=64.1

Q ss_pred             eEEEEeCCCCCCC----CCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecC-------CC
Q 004785           92 SLHHLRPKYCPLS----PPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGH-------RR  150 (730)
Q Consensus        92 sIrlWd~~t~~L~----gH~~~Vt~lafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH-------~~  150 (730)
                      +|.++|..+.++.    .-..+  .+.|+|||++|+++.          .+++|.+||+.+++.+..+...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            6778888776321    11223  799999999999886          3789999999999999998643       13


Q ss_pred             CcEEEEEccCCCCEEEEEeC--CCcEEE--EECCC
Q 004785          151 TPWVVRFHPLNPTIIASGSL--DHEVRL--WNAST  181 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~--DgtVrL--WDl~t  181 (730)
                      ....++|+| ++++++.+..  +..|.+  +|+.+
T Consensus       125 ~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh
Confidence            466799999 7777776654  456888  87743

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.06  E-value=0.00068  Score=80.08  Aligned_cols=238  Identities=11%  Similarity=0.020  Sum_probs=132.1

Q ss_pred             cCCCEEE-EEeCCC----eEEEEeCCCC-CCC-CC-CCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCe--EEE
Q 004785           79 DARRGLA-SWVEAE----SLHHLRPKYC-PLS-PP-PRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGS--CLK  143 (730)
Q Consensus        79 d~g~~L~-Sgs~Dg----sIrlWd~~t~-~L~-gH-~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~--~l~  143 (730)
                      .+++.|+ +...+|    .|+++|+.++ ... .+ ......+.|+|||+.|+....|     ..|+++++.++.  ...
T Consensus       184 PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l  263 (751)
T 2xe4_A          184 PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVC  263 (751)
T ss_dssp             TTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEE
T ss_pred             CCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEE
Confidence            3555454 333333    4999999887 532 11 1123468999999988887765     368889998764  233


Q ss_pred             EEec-CCCCcEEEEEccCCCCEEEEEe---CCCcEEEEECCCC--eE--EEEec-CCCCeEEEEEcCCCCEEEEEE-CC-
Q 004785          144 VLHG-HRRTPWVVRFHPLNPTIIASGS---LDHEVRLWNASTA--EC--IGSRD-FYRPIASIAFHASGELLAVAS-GH-  212 (730)
Q Consensus       144 ~l~g-H~~~V~sVafSP~dg~lLaSgS---~DgtVrLWDl~tg--~~--i~~l~-h~~~V~sVafSPdG~~LAsgS-dd-  212 (730)
                      .+.. .......+.|+| ++++|+..+   ....|+++|+.++  +.  ..... ......++.|+. |+.|+..+ .+ 
T Consensus       264 v~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~  341 (751)
T 2xe4_A          264 LYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGG  341 (751)
T ss_dssp             EEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTT
T ss_pred             EEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCC
Confidence            4432 234456789999 777666544   2446889999875  23  22222 334455666554 55555544 32 


Q ss_pred             ----eEEEEEcCCCccccCCeE-EecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecC
Q 004785          213 ----KLYIWRYNMREETSSPRI-VLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGA  287 (730)
Q Consensus       213 ----~I~VWDl~t~~~~~~~~~-l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~  287 (730)
                          +|.++|+.+...   ... +..+...+.--.|++++.+|+++.......                    .+.+.+.
T Consensus       342 a~~~~L~~~d~~~~~~---~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~--------------------~l~~~dl  398 (751)
T 2xe4_A          342 AVNHKLLIAPRGQPSD---WSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLT--------------------RIWTMMA  398 (751)
T ss_dssp             CTTCEEEEEETTSTTC---CCCEEECCCSSEEEEEEEECSSEEEEEEEETTEE--------------------EEEEEEC
T ss_pred             CCCcEEEEEcCCCccc---ceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEE--------------------EEEEEec
Confidence                277777764321   122 344444433333444567777665432211                    2222221


Q ss_pred             -------CCCC-CCCcccccCCCCCCceeeeE------ecCCCEEEEEecCCCCCcccceeecCCCcceeeec
Q 004785          288 -------HSSS-HPGLAEEVPLITPPFLRPSF------VRDDERISLQHTEHDSGATRTQQSLRSSSSVRLLT  346 (730)
Q Consensus       288 -------~s~d-~~~L~~~~~~~slpil~p~F------SpDg~rI~~~~~~~dsgs~~~~~~~~ss~~~~l~~  346 (730)
                             ..+. ...+. .    +.......+      +.|++.+++...+...+...+..++.+...+.|..
T Consensus       399 ~~~~~~~~~g~~~~~l~-l----~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~~l~~  466 (751)
T 2xe4_A          399 DSQDGVFKAGTGLREVV-M----EEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKV  466 (751)
T ss_dssp             CTTTSCCCTTTCCEECC-C----CCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEEEEEE
T ss_pred             ccccccccCCccceEEC-C----CCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence                   1111 00000 0    000111233      56888899988888888899988887766666653

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.97  E-value=0.00059  Score=71.13  Aligned_cols=170  Identities=8%  Similarity=0.074  Sum_probs=106.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCC-----------------------CCCCeEEEEECC-CCCEEEEEeCCCeEEEEEC
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLSP-----------------------PPRSTIAAAFSP-DGKTLASTHGDHTVKIIDC  136 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~g-----------------------H~~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl  136 (730)
                      +..+++...++.|..|+...+.+..                       ....+..+++++ +|+ |+.+...+.|.++|.
T Consensus        30 g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~d~  108 (322)
T 2fp8_A           30 NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSVVGS  108 (322)
T ss_dssp             CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEEECT
T ss_pred             CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEEEeC
Confidence            4446677777888888776543210                       013578999998 554 555555556888887


Q ss_pred             CCCeEEEEEec-----CCCCcEEEEEccCCCCEEEEEeC-----------------CCcEEEEECCCCeEEEEecCCCCe
Q 004785          137 QTGSCLKVLHG-----HRRTPWVVRFHPLNPTIIASGSL-----------------DHEVRLWNASTAECIGSRDFYRPI  194 (730)
Q Consensus       137 ~tg~~l~~l~g-----H~~~V~sVafSP~dg~lLaSgS~-----------------DgtVrLWDl~tg~~i~~l~h~~~V  194 (730)
                      .+++. ..+..     .......+++.+.+++++++-..                 ++.|..||..+++...........
T Consensus       109 ~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p  187 (322)
T 2fp8_A          109 EGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP  187 (322)
T ss_dssp             TCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC
T ss_pred             CCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC
Confidence            76542 23321     11346789998734566665432                 367999998877654433322345


Q ss_pred             EEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          195 ASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       195 ~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +.++|+|+|++|+++.  .++|++||+..... .....+..... ...++++++|+.+++..
T Consensus       188 ~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             CEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            6799999999887775  35699999875321 11111212223 78899999998666554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.97  E-value=0.00024  Score=83.38  Aligned_cols=161  Identities=12%  Similarity=0.135  Sum_probs=107.0

Q ss_pred             eEEEEeCCCCCC------CCCC-------CCeEEEEECCCCC---EEEEEeCCCeEEEEECCCCeEEEEEecCC------
Q 004785           92 SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHR------  149 (730)
Q Consensus        92 sIrlWd~~t~~L------~gH~-------~~Vt~lafSPDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~------  149 (730)
                      .|..||.+++++      ..|.       ..+.......+|+   .|+.++.+|.++++|.++|+.+...+...      
T Consensus       276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  355 (689)
T 1yiq_A          276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG  355 (689)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence            388999988742      2232       1222223333665   78899999999999999999874432111      


Q ss_pred             --------------------------------C-CcEEEEEccCCCCEEEEEeC--------------------------
Q 004785          150 --------------------------------R-TPWVVRFHPLNPTIIASGSL--------------------------  170 (730)
Q Consensus       150 --------------------------------~-~V~sVafSP~dg~lLaSgS~--------------------------  170 (730)
                                                      + .-..++|+| +..+++....                          
T Consensus       356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  434 (689)
T 1yiq_A          356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL  434 (689)
T ss_dssp             EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred             cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCc
Confidence                                            0 011378888 6566665421                          


Q ss_pred             -------------------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeE
Q 004785          171 -------------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       171 -------------------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~  230 (730)
                                         +++|+.||+.+|+.+..+.+...+....+...|.+|++++ ++.|+.||.++++.+.  ..
T Consensus       435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw--~~  512 (689)
T 1yiq_A          435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW--EQ  512 (689)
T ss_dssp             EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE--EE
T ss_pred             cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccce--ee
Confidence                               3789999999999998877665555556777888888888 4559999999998754  12


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...+.....-+.|..+|+.+++...
T Consensus       513 ~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          513 PAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eCCCCcccCceEEEECCEEEEEEEe
Confidence            2233222344677889987766554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.96  E-value=0.00073  Score=68.36  Aligned_cols=143  Identities=12%  Similarity=0.025  Sum_probs=95.8

Q ss_pred             CeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004785          109 STIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~  187 (730)
                      .+..++|+++++.|+.+. .++.|.++|...+.....+.........++++++++.++++-...+.|.++|+........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            467999999766665554 4789999998766544444333356889999984566666666778999999875433222


Q ss_pred             ecC-CCCeEEEEEcCCCCEEEEEEC----CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          188 RDF-YRPIASIAFHASGELLAVASG----HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       188 l~h-~~~V~sVafSPdG~~LAsgSd----d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ... ......++++|++..|+.+..    +.|..++++.... .  ......-.....++|++++.+|..+.
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~--~~~~~~~~~P~gia~d~~~~~lyv~d  185 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R--ILAQDNLGLPNGLTFDAFSSQLCWVD  185 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E--EEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E--EEEECCCCCCcEEEEcCCCCEEEEEE
Confidence            322 246789999998777766653    3488888764322 1  11112334678999999988776654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.90  E-value=0.0004  Score=72.19  Aligned_cols=191  Identities=10%  Similarity=0.110  Sum_probs=116.7

Q ss_pred             eEEEEECCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 004785          110 TIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS  187 (730)
Q Consensus       110 Vt~lafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~  187 (730)
                      ...+.|+ ++.++.+++.++  .|+++|+++++.+..+.-.. ........+.++.+++..-.++.+.++|..+.+.+..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            5789998 777777777766  89999999999998886543 3444334443456666666799999999999999998


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCCeEEEEEeeCCccCCC
Q 004785          188 RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAAPLLLTAEVNDLDSSE  263 (730)
Q Consensus       188 l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPdG~~Llatgsvwdl~s~~  263 (730)
                      +.....-  ..+++||+.|+.+. +++|+++|..+.+....... ....   ..++.+.|. +|+ +.+  ++|.-   +
T Consensus       123 i~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V-~~~g~~~~~lNELe~~-~G~-lya--n~w~~---~  192 (262)
T 3nol_A          123 FNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV-TAHGEELPELNELEWV-DGE-IFA--NVWQT---N  192 (262)
T ss_dssp             EECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC-EETTEECCCEEEEEEE-TTE-EEE--EETTS---S
T ss_pred             EECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe-ccCCccccccceeEEE-CCE-EEE--EEccC---C
Confidence            8765432  34446788777765 45599999998876542111 1111   345567776 675 443  23431   2


Q ss_pred             cceeEeccCCcccCCCCeEEEecCCCCCCCCccccc--CCCCCCce-eeeEecCCCEEEEEec
Q 004785          264 SSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEV--PLITPPFL-RPSFVRDDERISLQHT  323 (730)
Q Consensus       264 ~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~--~~~slpil-~p~FSpDg~rI~~~~~  323 (730)
                      ....+...+|.      ++...+...     +....  .......+ -.+|+|+++++.+...
T Consensus       193 ~I~vIDp~tG~------V~~~Id~~~-----L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          193 KIVRIDPETGK------VTGIIDLNG-----ILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEECTTTCB------EEEEEECTT-----GGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             eEEEEECCCCc------EEEEEECCc-----CccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            23333333333      222222110     00000  00112344 6899999999998443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.87  E-value=0.00042  Score=72.23  Aligned_cols=189  Identities=10%  Similarity=0.056  Sum_probs=116.3

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR  188 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l  188 (730)
                      ....+.|+ ++.++.+.+.++.|+++|+++++.+..+ -. .........+.++.+++..-.++.+.++|..+.+.+..+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti  132 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT  132 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence            35788997 4666777788889999999999988777 22 334443333435677777778999999999999999988


Q ss_pred             cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCCeEEEEEeeCCccCCCc
Q 004785          189 DFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAAPLLLTAEVNDLDSSES  264 (730)
Q Consensus       189 ~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPdG~~Llatgsvwdl~s~~~  264 (730)
                      .....-..++  +||+.|+.+. ++.|+++|..+.+...... ...+.   ..++.+.|. +|+ +.+  ++|.-   +.
T Consensus       133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~-V~~~g~~v~~lNeLe~~-dG~-lya--nvw~s---~~  202 (268)
T 3nok_A          133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ-VKLRGQPVELINELECA-NGV-IYA--NIWHS---SD  202 (268)
T ss_dssp             ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE-CEETTEECCCEEEEEEE-TTE-EEE--EETTC---SE
T ss_pred             eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE-eCCCCcccccccccEEe-CCE-EEE--EECCC---Ce
Confidence            7654434444  5788888776 4559999999887654211 11122   245677777 675 443  33432   23


Q ss_pred             ceeEeccCCcccCCCCeEEEecCCCCCCCCccc-cc--CCCCCCce-eeeEecCCCEEEEE
Q 004785          265 SLTLATSPGYWRYPPPVICMAGAHSSSHPGLAE-EV--PLITPPFL-RPSFVRDDERISLQ  321 (730)
Q Consensus       265 ~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~-~~--~~~slpil-~p~FSpDg~rI~~~  321 (730)
                      ...+...+|.      ++...+...     +.. ..  .......+ -.+|+++++++.+.
T Consensus       203 I~vIDp~TG~------V~~~Idl~~-----L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          203 VLEIDPATGT------VVGVIDASA-----LTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             EEEECTTTCB------EEEEEECHH-----HHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             EEEEeCCCCc------EEEEEECCC-----CcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence            3333333333      222222110     000 00  01112344 58999999999883

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.86  E-value=0.0011  Score=69.08  Aligned_cols=139  Identities=12%  Similarity=0.053  Sum_probs=92.5

Q ss_pred             CeEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEEEEecCCC-CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785          109 STIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKVLHGHRR-TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~l~gH~~-~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i  185 (730)
                      ....+.|++|+.++++.+.  +..|.++|+.+++.+..+.-... ....+++.  ++.++++.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3689999998754444443  57999999999999888753222 22345554  4566666777899999999999998


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec--CCCCeEEEEEccCCCeEEE
Q 004785          186 GSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR--TRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       186 ~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~--h~~~V~sVaFSPdG~~Lla  252 (730)
                      ..+... .-....+++||+.|+++. ++.|+++|..+.+.......-..  .-..++.+.|. +|+ +.+
T Consensus       100 ~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~-lyv  166 (266)
T 2iwa_A          100 KNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE-VWA  166 (266)
T ss_dssp             EEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEE
T ss_pred             EEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE-EEE
Confidence            887654 112344667888777665 34599999988775441111110  11246788888 664 443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.73  E-value=0.00095  Score=78.84  Aligned_cols=144  Identities=13%  Similarity=0.080  Sum_probs=90.3

Q ss_pred             CCCC-CeEEEEEC-CCCCEEEEEeC-C----CeEEEEECCCC-eEEE-EEecCCCCcEEEEEccCCCCEEEEEeCC----
Q 004785          105 PPPR-STIAAAFS-PDGKTLASTHG-D----HTVKIIDCQTG-SCLK-VLHGHRRTPWVVRFHPLNPTIIASGSLD----  171 (730)
Q Consensus       105 gH~~-~Vt~lafS-PDG~~LaSgS~-D----gtVrVWDl~tg-~~l~-~l~gH~~~V~sVafSP~dg~lLaSgS~D----  171 (730)
                      +|.- .+....|| |||++||.+.. +    .+|+++|+.++ +.+. .+..   ....++|+| +++.|+....|    
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~Wsp-Dg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGP-DHTSLFYVTKDETLR  245 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECS-STTEEEEEEECTTCC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEec-CCCEEEEEEECCCCC
Confidence            3443 67899999 99999887644 2    35999999998 6321 1211   134689999 66666555554    


Q ss_pred             -CcEEEEECCCCeE--EEEe--cCCCCeEEEEEcCCCCEEEEEE-C--C-eEEEEEcCCCccccCC--eEEec-CCCCeE
Q 004785          172 -HEVRLWNASTAEC--IGSR--DFYRPIASIAFHASGELLAVAS-G--H-KLYIWRYNMREETSSP--RIVLR-TRRSLR  239 (730)
Q Consensus       172 -gtVrLWDl~tg~~--i~~l--~h~~~V~sVafSPdG~~LAsgS-d--d-~I~VWDl~t~~~~~~~--~~l~~-h~~~V~  239 (730)
                       ..|+++++.+++.  ...+  ........+.|+|||++|+..+ .  . .|+++|+.++..  ..  ..+.. ......
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--HNTLEIVRPREKGVRY  323 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--CCCEEESSCCCTTCCE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--CceeEEeecCCCCceE
Confidence             3688899987642  2222  2334567889999999888766 2  2 299999987531  11  12222 334455


Q ss_pred             EEEEccCCCeEEEEEe
Q 004785          240 AVHFHPHAAPLLLTAE  255 (730)
Q Consensus       240 sVaFSPdG~~Llatgs  255 (730)
                      ++.|+. |+.|+..++
T Consensus       324 s~~~~~-g~~l~~~t~  338 (751)
T 2xe4_A          324 DVQMHG-TSHLVILTN  338 (751)
T ss_dssp             EEEEET-TTEEEEEEC
T ss_pred             EEeeee-CCEEEEEeC
Confidence            555543 555665543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.72  E-value=1.7e-05  Score=85.48  Aligned_cols=126  Identities=16%  Similarity=0.103  Sum_probs=65.6

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC--CeE
Q 004785          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIA  195 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~--~V~  195 (730)
                      ++.++++++.|+.|+.||..+|+.+..++.  +.+.+..+.. ++.++++++.|+.|+.||..+|+.+.......  .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            678999999999999999999999988876  5566555666 66778888899999999999998766654221  110


Q ss_pred             -EEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          196 -SIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       196 -sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                       +..+. ++..|++++ ++.|+.||..+++...   ....+.    ...++|++..+++++
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w---~~~~~~----~~~~~p~~~~v~~~~  137 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ---TLSSAF----ADSLSPSTSLLYLGR  137 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEE
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE---EecCCC----cccccccCCEEEEEe
Confidence             11111 344566665 5569999999987643   111121    234567777666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.66  E-value=0.0043  Score=63.78  Aligned_cols=196  Identities=14%  Similarity=0.085  Sum_probs=116.8

Q ss_pred             CCeEEEEECCCCCEEEEEeCC--CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE
Q 004785          108 RSTIAAAFSPDGKTLASTHGD--HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI  185 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~D--gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i  185 (730)
                      ..+..+.|+. +.++.+.+.+  ..|+++|+++|+.+..+.-... .........++++++..-.++.+.++|..+.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            3477999985 5566666665  4899999999999988864433 3333333335666777778999999999999999


Q ss_pred             EEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCC---CCeEEEEEccCCCeEEEEEeeCCccC
Q 004785          186 GSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR---RSLRAVHFHPHAAPLLLTAEVNDLDS  261 (730)
Q Consensus       186 ~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~---~~V~sVaFSPdG~~Llatgsvwdl~s  261 (730)
                      ..+.....-..++  +|++.|+++. +++|+++|..+.+...... ...+.   ..++.+.|. +|+ +.  .++|.-  
T Consensus        99 ~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~-V~~~g~~~~~lNeLe~~-~G~-ly--anvw~s--  169 (243)
T 3mbr_X           99 ARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIK-VTAGGRPLDNLNELEWV-NGE-LL--ANVWLT--  169 (243)
T ss_dssp             EEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEE-CEETTEECCCEEEEEEE-TTE-EE--EEETTT--
T ss_pred             EEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEE-EccCCcccccceeeEEe-CCE-EE--EEECCC--
Confidence            9987655434444  5677777665 4459999999887654211 11121   345566665 565 44  334432  


Q ss_pred             CCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce-eeeEecCCCEEEEEec
Q 004785          262 SESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL-RPSFVRDDERISLQHT  323 (730)
Q Consensus       262 ~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil-~p~FSpDg~rI~~~~~  323 (730)
                       +....+...+|.      ++...+...-.. ..... .......+ -.+|+++++++.+...
T Consensus       170 -~~I~vIDp~tG~------V~~~idl~~l~~-~~~~~-~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 -SRIARIDPASGK------VVAWIDLQALVP-DADAL-TDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             -TEEEEECTTTCB------EEEEEECGGGST-TTTSC-CCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             -CeEEEEECCCCC------EEEEEECCcCcc-ccccc-cCCcCCceEEEEEcCCCCEEEEECC
Confidence             233344444444      233222110000 00000 00112344 5899999999998433

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.65  E-value=0.00068  Score=79.29  Aligned_cols=78  Identities=10%  Similarity=0.130  Sum_probs=59.1

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------------eEEEEECCCCeEEEEEec--CC-------CCcEEEEEccCCC
Q 004785          111 IAAAFSPDGKTLASTHGDH-------------------TVKIIDCQTGSCLKVLHG--HR-------RTPWVVRFHPLNP  162 (730)
Q Consensus       111 t~lafSPDG~~LaSgS~Dg-------------------tVrVWDl~tg~~l~~l~g--H~-------~~V~sVafSP~dg  162 (730)
                      ..+++++++.+|+.+..++                   .|..+|.++|+.+..++.  |.       .....+.... ++
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG  324 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AG  324 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TT
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CC
Confidence            3578899999998887664                   599999999999888764  21       1223334444 55


Q ss_pred             ---CEEEEEeCCCcEEEEECCCCeEEEEec
Q 004785          163 ---TIIASGSLDHEVRLWNASTAECIGSRD  189 (730)
Q Consensus       163 ---~lLaSgS~DgtVrLWDl~tg~~i~~l~  189 (730)
                         ..++.++.+|.|+++|..+|+.+..+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKN  354 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence               688999999999999999999887654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.64  E-value=0.00063  Score=69.84  Aligned_cols=159  Identities=12%  Similarity=0.012  Sum_probs=106.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR  156 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVa  156 (730)
                      +..|+.+..++.|..+|.. +.    +..+...+.++...++|. |..++.++.|..+|.. ++.+..+......+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            5678888888999999987 42    223344456667777776 5567788999999998 888777776666677788


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCC
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTR  235 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~  235 (730)
                      +.+ ++.+++..   +.|..+| .+++.+.... ....+.++..+++|.+.+...++.|..+|. +++...   ......
T Consensus       184 ~d~-~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~---~~~~~~  254 (330)
T 3hxj_A          184 IGK-DGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKW---RFKTGK  254 (330)
T ss_dssp             ECT-TCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEE---EEECSS
T ss_pred             EcC-CCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeE---EeeCCC
Confidence            876 66655544   7899999 7777666654 335678888998887665544677888874 333221   222223


Q ss_pred             CCeEEEEEccCCCeEE
Q 004785          236 RSLRAVHFHPHAAPLL  251 (730)
Q Consensus       236 ~~V~sVaFSPdG~~Ll  251 (730)
                      ..+..+.+.++|...+
T Consensus       255 ~~~~~~~~~~~g~l~v  270 (330)
T 3hxj_A          255 RIESSPVIGNTDTIYF  270 (330)
T ss_dssp             CCCSCCEECTTSCEEE
T ss_pred             CccccceEcCCCeEEE
Confidence            3344556666776443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.57  E-value=0.0097  Score=59.98  Aligned_cols=162  Identities=9%  Similarity=0.020  Sum_probs=102.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEE-ecCCCCc
Q 004785           81 RRGLASWVEAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHG---DHTVKIIDCQTGSCLKVL-HGHRRTP  152 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~---L-~gH~~~Vt~lafSPDG~~LaSgS~---DgtVrVWDl~tg~~l~~l-~gH~~~V  152 (730)
                      +...++-...+.|.+++.+...   + .........++++|++..|+.+..   .+.|.++++.. +....+ .......
T Consensus        91 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P  169 (267)
T 1npe_A           91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLP  169 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCE
T ss_pred             CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCC
Confidence            3444444556788888876431   1 112245789999997666665554   36888888754 333333 2333467


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccccCCeE
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~~~~~~  230 (730)
                      ..++++++++.++++-...+.|.++|+.................++..  +..|+++.  ++.|.++|..+++...   .
T Consensus       170 ~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~---~  244 (267)
T 1npe_A          170 NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD---T  244 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEE---E
T ss_pred             cEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceE---E
Confidence            899999944556666667789999999765444333333445566654  56676666  3559999998877543   2


Q ss_pred             EecC-CCCeEEEEEccCCC
Q 004785          231 VLRT-RRSLRAVHFHPHAA  248 (730)
Q Consensus       231 l~~h-~~~V~sVaFSPdG~  248 (730)
                      +... ......+++.|++.
T Consensus       245 i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          245 FHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             ECCSSCCCCCCEEEECSCC
T ss_pred             EccccccccceeeecCccC
Confidence            2222 22467888888875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.54  E-value=0.00021  Score=82.21  Aligned_cols=163  Identities=11%  Similarity=0.104  Sum_probs=105.0

Q ss_pred             CCeEEEEeCCCCCCCCC---CCCeEEEEECCCCCEEEEEeCCC-------------------------------------
Q 004785           90 AESLHHLRPKYCPLSPP---PRSTIAAAFSPDGKTLASTHGDH-------------------------------------  129 (730)
Q Consensus        90 DgsIrlWd~~t~~L~gH---~~~Vt~lafSPDG~~LaSgS~Dg-------------------------------------  129 (730)
                      ++.+.++|.++.++...   .+.-..++++|||+++++++.+.                                     
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            44688888877521100   11335678999999999988543                                     


Q ss_pred             -eEEEEECCC--CeE-EEEEecCCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECCCCe------------EEEEecCCC
Q 004785          130 -TVKIIDCQT--GSC-LKVLHGHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAE------------CIGSRDFYR  192 (730)
Q Consensus       130 -tVrVWDl~t--g~~-l~~l~gH~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~------------~i~~l~h~~  192 (730)
                       .|.|.|.++  ++. +..+..- ....++.++| |++++ +++..+.+|.++|+.+.+            .........
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~  331 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL  331 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred             CcEEEEeCcccCCceeEEEEecC-CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence             377777777  544 4455432 3467799999 66655 555578899999999653            344455566


Q ss_pred             CeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCc------c-ccCCeEEecCCCC-----eEEEEEccCCCeEEEEEe
Q 004785          193 PIASIAFHASGELLAVAS--GHKLYIWRYNMRE------E-TSSPRIVLRTRRS-----LRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       193 ~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~------~-~~~~~~l~~h~~~-----V~sVaFSPdG~~Llatgs  255 (730)
                      ....++|+|+| ++++..  ++.|.+||+....      . ......+.-|-.+     -..+.++|||++|+++..
T Consensus       332 gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          332 GPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            78999999999 777776  6679999997721      1 1111122223221     122346899998877764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.51  E-value=0.007  Score=65.56  Aligned_cols=165  Identities=9%  Similarity=-0.028  Sum_probs=110.2

Q ss_pred             EeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCC
Q 004785           87 WVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (730)
Q Consensus        87 gs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg  162 (730)
                      .+....|+.+++....   +......+..++|++.+..|+ +-...+.|+.++...+.....+.........+++.+.++
T Consensus        92 ~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g  171 (386)
T 3v65_B           92 FANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD  171 (386)
T ss_dssp             EECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTT
T ss_pred             eecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCC
Confidence            4455678888876542   223345688999998655555 445578999999887664444443344567899988567


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCCCe
Q 004785          163 TIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      +++++-...+.|.+.++........+. .-.....++++|.+..|+....   +.|+.+++......   ......-...
T Consensus       172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~~~~~~P  248 (386)
T 3v65_B          172 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---IIADTHLFWP  248 (386)
T ss_dssp             EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCSCE
T ss_pred             eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE---EEEECCCCCe
Confidence            777777778889999987554333333 3356789999998887777763   34888887654321   1222334467


Q ss_pred             EEEEEccCCCeEEEEE
Q 004785          239 RAVHFHPHAAPLLLTA  254 (730)
Q Consensus       239 ~sVaFSPdG~~Llatg  254 (730)
                      ..|+|+|++..|..+-
T Consensus       249 nGlavd~~~~~lY~aD  264 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVD  264 (386)
T ss_dssp             EEEEEEGGGTEEEEEE
T ss_pred             eeEEEeCCCCEEEEEE
Confidence            8999999887776664

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.50  E-value=0.018  Score=60.43  Aligned_cols=162  Identities=10%  Similarity=-0.005  Sum_probs=103.2

Q ss_pred             CCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCC----CeEEEEEecCCCCcEEEEEccCC
Q 004785           90 AESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFHPLN  161 (730)
Q Consensus        90 DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~t----g~~l~~l~gH~~~V~sVafSP~d  161 (730)
                      ...|+..|+....   +......+.+++|+++++.|+.+ ..++.|+.+++..    ......+.........+++.+.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            4456777766542   22334567899999866555554 4568999999876    22222333333456889998746


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCCC
Q 004785          162 PTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRS  237 (730)
Q Consensus       162 g~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~~  237 (730)
                      ++++++-...+.|.+.|+........+. .......++++|.+..|+.+..   ++|..+++.......   .....-..
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~---~~~~~~~~  165 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQW  165 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCSC
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE---EEECCCCC
Confidence            6777777778899999987554433333 3456789999997776666652   458888875433211   12223456


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004785          238 LRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       238 V~sVaFSPdG~~Llatg  254 (730)
                      ...++|++++..|..+.
T Consensus       166 P~gla~d~~~~~lY~~D  182 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVD  182 (316)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeccCCEEEEEE
Confidence            78999999888776654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.47  E-value=0.014  Score=60.50  Aligned_cols=168  Identities=12%  Similarity=0.106  Sum_probs=97.5

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeC-C-CeEEEEECCCCeEEEEEec-CCCCcEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHG-D-HTVKIIDCQTGSCLKVLHG-HRRTPWVV  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~--L~gH~~~Vt~lafSPDG~~LaSgS~-D-gtVrVWDl~tg~~l~~l~g-H~~~V~sV  155 (730)
                      +..+++-..++.|..||.....  +..-...+..++++++|+++++... + ..|..+|..+++....... .......+
T Consensus        43 g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~  122 (306)
T 2p4o_A           43 GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI  122 (306)
T ss_dssp             SCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEE
T ss_pred             CCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcc
Confidence            3334444456677777765431  1112345889999999996655543 2 2577778888875433321 22233455


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeE-EEEe----------cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCC
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAEC-IGSR----------DFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMR  222 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~-i~~l----------~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~  222 (730)
                      +..+ ++..+++-..++.|+++|..+++. +...          ..-...+.+  +|++++|+++.  .+.|++||+...
T Consensus       123 ~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~  199 (306)
T 2p4o_A          123 TPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST  199 (306)
T ss_dssp             EESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT
T ss_pred             cccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC
Confidence            6555 555566555688999999876532 2110          011234555  88999888887  345999998752


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      ........+.. ......++++++|+.+++
T Consensus       200 g~~~~~~~~~~-~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          200 DKPGEPEIFVE-QTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             SCBCCCEEEEE-SCCCSSEEEBTTCCEEEE
T ss_pred             CCCCccEEEec-cCCCCCeEECCCCCEEEE
Confidence            21111112211 234567899999975443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.42  E-value=0.014  Score=62.31  Aligned_cols=163  Identities=9%  Similarity=-0.043  Sum_probs=107.0

Q ss_pred             CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCE
Q 004785           89 EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI  164 (730)
Q Consensus        89 ~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~l  164 (730)
                      ....|+..++....   +......+..++|++....|+.. ...+.|+.++...+.....+.........+++.+.++++
T Consensus        51 ~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  130 (349)
T 3v64_C           51 NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  130 (349)
T ss_dssp             CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred             cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence            44556666665432   22233457899999865555544 457899999988765444444334556789999856777


Q ss_pred             EEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCCCeEE
Q 004785          165 IASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSLRA  240 (730)
Q Consensus       165 LaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~~V~s  240 (730)
                      +++-...+.|.+.++........+. .-.....++++|.+..|+....   ++|+.++++......   .....-.....
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnG  207 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNG  207 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEE
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcce
Confidence            7777778899999987554333332 3356789999998777776663   448888876543211   11123346789


Q ss_pred             EEEccCCCeEEEEE
Q 004785          241 VHFHPHAAPLLLTA  254 (730)
Q Consensus       241 VaFSPdG~~Llatg  254 (730)
                      |+|+|++..|..+-
T Consensus       208 la~d~~~~~lY~aD  221 (349)
T 3v64_C          208 LTIDYAGRRMYWVD  221 (349)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEeCCCCEEEEEE
Confidence            99999888776663

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.41  E-value=0.0017  Score=66.61  Aligned_cols=161  Identities=14%  Similarity=-0.004  Sum_probs=104.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      +.+..|+.+..++.|..+|.. +.    +......+.++.+.++|.+++ ++  +.|..+| .+++.+..+......+.+
T Consensus       145 ~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~  219 (330)
T 3hxj_A          145 SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTR  219 (330)
T ss_dssp             CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred             cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceec
Confidence            335568888888999999987 52    222344567777877777554 44  7899999 788877777766667888


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      +...+ ++. +..++.++.|..+|. +++.+..+.. ...+.++.+.++|++.+...++.|..+|. +++...   ....
T Consensus       220 ~~~~~-~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~---~~~~  292 (330)
T 3hxj_A          220 PAISE-DGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKW---NFET  292 (330)
T ss_dssp             CEECT-TSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEE---EEEC
T ss_pred             eEECC-CCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEE---EEEc
Confidence            88877 555 444667788888885 5655555443 23344566676776544333557999985 444322   2222


Q ss_pred             CCCCeEEEEEccCCCeEE
Q 004785          234 TRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Ll  251 (730)
                      ....+.++...++|+.++
T Consensus       293 ~~~~~~~~~~d~~g~l~~  310 (330)
T 3hxj_A          293 GSWIIATPVIDENGTIYF  310 (330)
T ss_dssp             SSCCCSCCEECTTCCEEE
T ss_pred             CCccccceEEcCCCEEEE
Confidence            345566777778887444

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.39  E-value=0.0035  Score=73.15  Aligned_cols=160  Identities=13%  Similarity=0.157  Sum_probs=100.8

Q ss_pred             eEEEEeCCCCCC------CCCC-------CCeEEEEECCCCC---EEEEEeCCCeEEEEECCCCeEEEEEecCCCC----
Q 004785           92 SLHHLRPKYCPL------SPPP-------RSTIAAAFSPDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHRRT----  151 (730)
Q Consensus        92 sIrlWd~~t~~L------~gH~-------~~Vt~lafSPDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~----  151 (730)
                      .|..+|.+++++      ..|.       .......+..+|+   .|+.++.+|.++++|..+|+.+..++.....    
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~  350 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccc
Confidence            388888888742      2232       2233333334675   6888999999999999999988544322100    


Q ss_pred             --------------------------------cEEEEEccCCCCEEEEE-------------------------------
Q 004785          152 --------------------------------PWVVRFHPLNPTIIASG-------------------------------  168 (730)
Q Consensus       152 --------------------------------V~sVafSP~dg~lLaSg-------------------------------  168 (730)
                                                      -..++++| +..+++..                               
T Consensus       351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  429 (668)
T 1kv9_A          351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (668)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             cccccCCccccccccccCCeeEECCCCccccCCCcceECC-CCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence                                            01267788 44444331                               


Q ss_pred             -----eCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCC-CCeEEE
Q 004785          169 -----SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTR-RSLRAV  241 (730)
Q Consensus       169 -----S~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~-~~V~sV  241 (730)
                           ..++.|..||+.+|+.+.............+...|.+|++++ ++.|++||.++++.+.   .+.... -.-.-+
T Consensus       430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~---~~~~~~~~~~~p~  506 (668)
T 1kv9_A          430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW---QFEAQSGIVAAPM  506 (668)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE---EEECSSCCCSCCE
T ss_pred             CCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe---EecCCCCcccCce
Confidence                 124789999999999988876555555555666788888887 4559999999998654   121111 111234


Q ss_pred             EEccCCCeEEEEEe
Q 004785          242 HFHPHAAPLLLTAE  255 (730)
Q Consensus       242 aFSPdG~~Llatgs  255 (730)
                      .+..+|+.+++.+.
T Consensus       507 ~~~~~G~~yva~~~  520 (668)
T 1kv9_A          507 TFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEECCEEEEEEEe
Confidence            45568886665554

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.35  E-value=0.0019  Score=75.60  Aligned_cols=81  Identities=14%  Similarity=0.045  Sum_probs=61.5

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCC--CeEEEEEcCCCC-
Q 004785          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYR--PIASIAFHASGE-  204 (730)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~--~V~sVafSPdG~-  204 (730)
                      ++.|+.||+.+|+.+..++.+.. +....+.. .+.+++.++.|+.|+.||.++|+.+..+....  ...-+.|..+|+ 
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence            37899999999999988876543 34345666 67889999999999999999999998876433  234577788888 


Q ss_pred             EEEEEE
Q 004785          205 LLAVAS  210 (730)
Q Consensus       205 ~LAsgS  210 (730)
                      ++++.+
T Consensus       532 yv~~~~  537 (689)
T 1yiq_A          532 YVTFMA  537 (689)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            455444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.33  E-value=0.023  Score=66.87  Aligned_cols=174  Identities=7%  Similarity=-0.012  Sum_probs=119.8

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCCCC------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCPLS------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~------------gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l  142 (730)
                      ....+....|+.|..++-|..|+..++++.            -....|.++...++|++|..|+.++-|.+||..+++..
T Consensus       361 ~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~  440 (795)
T 4a2l_A          361 CIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE  440 (795)
T ss_dssp             EEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             EEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence            334566778999999888999998765321            12356999999988885677788778999999887643


Q ss_pred             EEEe-----cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------CCCCeEEEEEcCCCCEEEEEE
Q 004785          143 KVLH-----GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       143 ~~l~-----gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-------h~~~V~sVafSPdG~~LAsgS  210 (730)
                       .+.     .....|.++...+ ++.+.+...  +-|.+||..+++......       ....|.++..+++|++.+...
T Consensus       441 -~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  516 (795)
T 4a2l_A          441 -NFNQRNSQLVNENVYAILPDG-EGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE  516 (795)
T ss_dssp             -EECTTTSCCSCSCEEEEEECS-SSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES
T ss_pred             -EeecCCCCcCCCeeEEEEECC-CCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC
Confidence             332     1345688888887 666665543  459999998876544321       135789999999998665544


Q ss_pred             CCeEEEEEcCCCccccCC---eEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          211 GHKLYIWRYNMREETSSP---RIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       211 dd~I~VWDl~t~~~~~~~---~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                       ++|.+||..+... ...   .........|.++..+++|...+.+.
T Consensus       517 -~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~  561 (795)
T 4a2l_A          517 -EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR  561 (795)
T ss_dssp             -SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES
T ss_pred             -CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC
Confidence             7799999876543 100   00011345789999999999666654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.29  E-value=0.027  Score=61.31  Aligned_cols=166  Identities=10%  Similarity=-0.001  Sum_probs=111.0

Q ss_pred             EEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCC----eEEEEEecCCCCcEEEEE
Q 004785           86 SWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRF  157 (730)
Q Consensus        86 Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg----~~l~~l~gH~~~V~sVaf  157 (730)
                      ..+....|+..++....   +......+..++|++.+..|+.+ ...+.|+.+++...    .....+.........+++
T Consensus        87 l~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           87 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             EEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             EEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            34445778888876542   33445678999999866655555 45688999998652    233344434556788999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEec
Q 004785          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      .+.+++++++-...+.|.+.|+........+. .......++++|.+.+|+....   +.|+..+++......   ....
T Consensus       167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~---~~~~  243 (400)
T 3p5b_L          167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTE  243 (400)
T ss_dssp             ETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE---EECS
T ss_pred             EecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE---EEEC
Confidence            87567777777778899999998665444443 3456789999998777777662   348888886543211   2223


Q ss_pred             CCCCeEEEEEccCCCeEEEEE
Q 004785          234 TRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .-.....|+|++++..|..+-
T Consensus       244 ~l~~P~glavd~~~~~lY~aD  264 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLYWVD  264 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEEEeCCCEEEEEE
Confidence            335778999999888777663

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.21  E-value=0.0068  Score=63.01  Aligned_cols=140  Identities=8%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC--------------------CCCcEEEEEccCCCCEEEEE
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH--------------------RRTPWVVRFHPLNPTIIASG  168 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH--------------------~~~V~sVafSP~dg~lLaSg  168 (730)
                      ...+++|+++|++++++..++.|..||..+++. ..+...                    ...+..+++.+++++ |+.+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            345788999999888888899999999876653 333210                    135788999873444 4445


Q ss_pred             eCCCcEEEEECCCCeEEEEec-----CCCCeEEEEEcC-CCCEEEEEEC------------------CeEEEEEcCCCcc
Q 004785          169 SLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHA-SGELLAVASG------------------HKLYIWRYNMREE  224 (730)
Q Consensus       169 S~DgtVrLWDl~tg~~i~~l~-----h~~~V~sVafSP-dG~~LAsgSd------------------d~I~VWDl~t~~~  224 (730)
                      ...+.|..+|..+++......     .....+.+++++ +|++.++-..                  +.|+.||..+++.
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            445568899987654322211     113578899999 9986665432                  3488888766543


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ..    ..........++|+++|+++.++.
T Consensus       178 ~~----~~~~~~~p~gia~~~dg~~lyv~d  203 (322)
T 2fp8_A          178 TL----LLKELHVPGGAEVSADSSFVLVAE  203 (322)
T ss_dssp             EE----EEEEESCCCEEEECTTSSEEEEEE
T ss_pred             EE----eccCCccCcceEECCCCCEEEEEe
Confidence            21    122223456799999998666553

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.17  E-value=0.00081  Score=73.17  Aligned_cols=89  Identities=13%  Similarity=-0.081  Sum_probs=71.4

Q ss_pred             eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----------CCCcEEEEECCCCeEEEEecCC--------
Q 004785          130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----------LDHEVRLWNASTAECIGSRDFY--------  191 (730)
Q Consensus       130 tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS----------~DgtVrLWDl~tg~~i~~l~h~--------  191 (730)
                      +|.++|..+++.+..+..-..+  .+.++| +++.++.+.          .+++|.+||+.+++.+..+...        
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence            8899999999999998755555  799999 666666654          4788999999999998887532        


Q ss_pred             CCeEEEEEcCCCCEEEEEEC---CeEEE--EEcCC
Q 004785          192 RPIASIAFHASGELLAVASG---HKLYI--WRYNM  221 (730)
Q Consensus       192 ~~V~sVafSPdG~~LAsgSd---d~I~V--WDl~t  221 (730)
                      .....++|+|||++|+++..   +.|.+  +|..+
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            34568999999999999872   34888  98866

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.14  E-value=0.0044  Score=65.57  Aligned_cols=139  Identities=6%  Similarity=-0.062  Sum_probs=91.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC------CC-------CCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS------PP-------PRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~------gH-------~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      +..++.+..++.|..+|.+++++.      ..       ...+.+ ....++..|+.++.++.|..+|.++|+.+..+..
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            567777888889999998877421      11       122322 1222466788888999999999999998877765


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeE------EEEEcCCCCEEEEEE-CCeEEEEEcC
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA------SIAFHASGELLAVAS-GHKLYIWRYN  220 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~------sVafSPdG~~LAsgS-dd~I~VWDl~  220 (730)
                      ...........   +..++.++.++.|..+|..+|+.+..+.....+.      .....  +..+++++ ++.|..+|..
T Consensus       132 ~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          132 AGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             SSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred             CCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence            44322223332   3567778889999999999999888766443321      22222  34566666 5569999998


Q ss_pred             CCccc
Q 004785          221 MREET  225 (730)
Q Consensus       221 t~~~~  225 (730)
                      +++..
T Consensus       207 tG~~~  211 (376)
T 3q7m_A          207 QGQMI  211 (376)
T ss_dssp             TCCEE
T ss_pred             CCcEE
Confidence            88753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.13  E-value=0.065  Score=57.07  Aligned_cols=169  Identities=11%  Similarity=0.021  Sum_probs=106.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      .+...++-...+.|..++.....    +.........+++.+.+..| ++-...+.|.+.++........+.........
T Consensus        84 ~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~  163 (349)
T 3v64_C           84 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  163 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred             ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence            34444555567888888876542    11223445789998855555 44455789999998755443444444456789


Q ss_pred             EEEccCCCCEEEEEeCC-CcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeE
Q 004785          155 VRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       155 VafSP~dg~lLaSgS~D-gtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~  230 (730)
                      ++++|.++.++++-..+ +.|...++.......... .-...+.++|+|++..|+.+..  +.|..+|+......   ..
T Consensus       164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~---~~  240 (349)
T 3v64_C          164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AV  240 (349)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EE
T ss_pred             EEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE---EE
Confidence            99999566666665555 789999986543333222 2345789999999888888873  44999998754321   12


Q ss_pred             EecCCCCeEEEEEccCCCeEEEE
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..........+++. .+ .+..+
T Consensus       241 ~~~~~~~P~giav~-~~-~ly~t  261 (349)
T 3v64_C          241 ISQGLPHPFAITVF-ED-SLYWT  261 (349)
T ss_dssp             ECSSCSSEEEEEEE-TT-EEEEE
T ss_pred             EeCCCCCceEEEEE-CC-EEEEe
Confidence            22334456777773 33 34444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.13  E-value=0.058  Score=63.47  Aligned_cols=178  Identities=9%  Similarity=0.005  Sum_probs=120.3

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCCCCCC----------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKYCPLS----------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL  142 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~----------gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l  142 (730)
                      +.....|....|+.|..++-|..|+..+..+.          -....|.++...++|.+. .|+.++-|..||..+++..
T Consensus       312 i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~  390 (795)
T 4a2l_A          312 VRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFT  390 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEE
T ss_pred             EEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEE
Confidence            33344567788999999888999987654321          123469999999888654 5777777999998877643


Q ss_pred             EEEec--------CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----CCCCeEEEEEcCCCCEEEEE
Q 004785          143 KVLHG--------HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----FYRPIASIAFHASGELLAVA  209 (730)
Q Consensus       143 ~~l~g--------H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----h~~~V~sVafSPdG~~LAsg  209 (730)
                      .....        ....|.++...+ +++++..|+.++-|.+||..+++......     ....|.++..+++|++.+..
T Consensus       391 ~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt  469 (795)
T 4a2l_A          391 SYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT  469 (795)
T ss_dssp             EECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred             EEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence            32211        235688888877 67745567777779999998877554322     24578999999988865544


Q ss_pred             ECCeEEEEEcCCCccccCCeE---EecCCCCeEEEEEccCCCeEEEE
Q 004785          210 SGHKLYIWRYNMREETSSPRI---VLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       210 Sdd~I~VWDl~t~~~~~~~~~---l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                       .++|.+||..+++.......   ..-....|.++...++|+..+.+
T Consensus       470 -~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  515 (795)
T 4a2l_A          470 -LSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG  515 (795)
T ss_dssp             -SSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE
T ss_pred             -cCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe
Confidence             46799999877643220000   01123678999999999866655

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.06  E-value=0.0028  Score=67.03  Aligned_cols=132  Identities=10%  Similarity=0.040  Sum_probs=88.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-CCCCcEEEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRF  157 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-H~~~V~sVaf  157 (730)
                      +..++.+..++.+..+|.+++++.  ........+..  ++..|+.++.++.|..+|..+|+.+..... ....+.....
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  316 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL  316 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE
Confidence            456777788899999998877422  11223444444  467888888999999999999998877652 2223333333


Q ss_pred             ccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-CCCeEEEEEcCCCCEEEEEE-CCeEEEEE
Q 004785          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVAS-GHKLYIWR  218 (730)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-~~~V~sVafSPdG~~LAsgS-dd~I~VWD  218 (730)
                      .   +..++.++.++.|.++|..+|+.+..... ...+.+.... .+..|++++ ++.|+.||
T Consensus       317 ~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          317 Y---NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             E---TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             E---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            2   46777888999999999999998877654 3333221111 244566666 45688886

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.05  E-value=0.017  Score=66.33  Aligned_cols=162  Identities=9%  Similarity=0.059  Sum_probs=98.9

Q ss_pred             CeEEEEeCCCCC------CCCCC--------CCeEEEEEC-CCCC---EEEEEeCCCeEEEEECCCCeEEEEEecCCC--
Q 004785           91 ESLHHLRPKYCP------LSPPP--------RSTIAAAFS-PDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHRR--  150 (730)
Q Consensus        91 gsIrlWd~~t~~------L~gH~--------~~Vt~lafS-PDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~--  150 (730)
                      +.|.-+|.++++      +..|.        ..+. +... .+|+   .++.++.+|.++++|.++|+.+..+.....  
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            578888888773      22332        1222 2222 4674   788899999999999999998876653320  


Q ss_pred             ----------C---------------------------------cEEEEEccCCCCEEEEEe------------------
Q 004785          151 ----------T---------------------------------PWVVRFHPLNPTIIASGS------------------  169 (730)
Q Consensus       151 ----------~---------------------------------V~sVafSP~dg~lLaSgS------------------  169 (730)
                                .                                 -..++++|+.+.+++...                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      0                                 013566773333333221                  


Q ss_pred             --------------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecC
Q 004785          170 --------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT  234 (730)
Q Consensus       170 --------------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h  234 (730)
                                    .++.|..||+.+|+.+........+..-.....|.++++++ ++.++.||.++++.+-.  .....
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~--~~~~~  527 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK--FQTGS  527 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSS
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE--ecCCC
Confidence                          36789999999999887766444333222223466777777 45599999999987541  11111


Q ss_pred             CCCeEEEEEccCCCeEEEEEe
Q 004785          235 RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       235 ~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...-.-+.|..+|+.+++...
T Consensus       528 g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          528 GIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             CCCSCCEEEEETTEEEEEEEE
T ss_pred             CcccCceEEEECCEEEEEEEc
Confidence            111123566788986666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.01  E-value=0.01  Score=68.03  Aligned_cols=136  Identities=10%  Similarity=0.048  Sum_probs=88.2

Q ss_pred             CCCC---EEEEEeCCCeEEEEECCCCeEEEEEecCC-------------CCc--------------------------EE
Q 004785          117 PDGK---TLASTHGDHTVKIIDCQTGSCLKVLHGHR-------------RTP--------------------------WV  154 (730)
Q Consensus       117 PDG~---~LaSgS~DgtVrVWDl~tg~~l~~l~gH~-------------~~V--------------------------~s  154 (730)
                      .+|+   .++.++.+|.++++|..+|+.+..++...             .++                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            4774   57788889999999999999887664321             111                          23


Q ss_pred             EEEccCCCCEEEEEe-------------------------------------CCCcEEEEECCCCeEEEEecCCCCeEEE
Q 004785          155 VRFHPLNPTIIASGS-------------------------------------LDHEVRLWNASTAECIGSRDFYRPIASI  197 (730)
Q Consensus       155 VafSP~dg~lLaSgS-------------------------------------~DgtVrLWDl~tg~~i~~l~h~~~V~sV  197 (730)
                      ++++| +..+++...                                     .++.|..||+.+++.+..+.....+.+.
T Consensus       391 ~a~dp-~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~  469 (571)
T 2ad6_A          391 DSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG  469 (571)
T ss_dssp             CEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB
T ss_pred             ceECC-CCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccce
Confidence            57888 545554432                                     3578999999999998887655544444


Q ss_pred             EEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          198 AFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       198 afSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .+...+..+++++ ++.|+.||.++++.+..  ........-.-+.+..+|+.++.+..
T Consensus       470 ~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~--~~~~~~~~~~p~~~~~~G~~yv~~~~  526 (571)
T 2ad6_A          470 TLYTKGGLVWYATLDGYLKALDNKDGKELWN--FKMPSGGIGSPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             CEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eEEECCCEEEEEcCCCeEEEEECCCCCEEEE--EeCCCCcEeeeEEEEECCEEEEEEEC
Confidence            4444566777777 45699999999987541  11222111122446678886665544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.01  E-value=0.03  Score=61.81  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=87.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC----Ce-EEEEECCCCeE-EEEEecCCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD----HT-VKIIDCQTGSC-LKVLHGHRRT  151 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~D----gt-VrVWDl~tg~~-l~~l~gH~~~  151 (730)
                      +..|+.....+.|+.++..++.   +.........++|+++|+ |+.+...    .. +...+...+.. ...+. ....
T Consensus       152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~  229 (433)
T 4hw6_A          152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARG  229 (433)
T ss_dssp             TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSS
T ss_pred             CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCC
Confidence            3555555444889999987663   334455689999999999 4444331    22 33333322211 11222 2344


Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE-EEec--CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCC
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-GSRD--FYRPIASIAFHASGELLAVASG--HKLYIWRYNM  221 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i-~~l~--h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t  221 (730)
                      ...++++|.++.++++-..++.|+.+|..+++.. ..+.  .......++|+|+|++|+++..  +.|+.+|++.
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            5678999866777777667889999999877662 2222  2223457999999998877763  4599988763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.01  E-value=0.051  Score=58.72  Aligned_cols=169  Identities=11%  Similarity=0.021  Sum_probs=105.3

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      .+...++-...+.|..++.....    +.........+++++.+..| ++-...+.|.+.++........+.........
T Consensus       127 ~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~g  206 (386)
T 3v65_B          127 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA  206 (386)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEE
T ss_pred             CCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcE
Confidence            34444555567788888876542    12222345678888755555 44455678999888655444444444466889


Q ss_pred             EEEccCCCCEEEEEeCC-CcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeE
Q 004785          155 VRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       155 VafSP~dg~lLaSgS~D-gtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~  230 (730)
                      |+++|.++.++++-..+ +.|...++.......... .-...+.++|+|++..|+.+..  +.|+.+|+......   ..
T Consensus       207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~  283 (386)
T 3v65_B          207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AV  283 (386)
T ss_dssp             EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EE
T ss_pred             EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EE
Confidence            99999566666665555 789999987543333332 3345789999998888888873  44999998654321   12


Q ss_pred             EecCCCCeEEEEEccCCCeEEEE
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..........+++. .+ .++.+
T Consensus       284 ~~~~~~~P~giav~-~~-~ly~t  304 (386)
T 3v65_B          284 ISQGLPHPFAITVF-ED-SLYWT  304 (386)
T ss_dssp             ECSSCSSEEEEEEE-TT-EEEEE
T ss_pred             EECCCCCceEEEEE-CC-EEEEe
Confidence            22234456777773 33 34444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.00  E-value=0.016  Score=63.74  Aligned_cols=139  Identities=13%  Similarity=0.042  Sum_probs=92.3

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCC----C-eEEEEECCCCeEE--EEEecCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGD----H-TVKIIDCQTGSCL--KVLHGHRR  150 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~D----g-tVrVWDl~tg~~l--~~l~gH~~  150 (730)
                      +..|+.....+.|+.+|.+.+.   +.........++|+++|++|+.+...    . .+.+++. .+...  ..+.. ..
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~  226 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQ  226 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CS
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CC
Confidence            3455555545889999987653   22345568899999999977666541    1 3444443 33221  23322 23


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t  221 (730)
                      ....++++|+++.++++-..++.|..+|..++......  ........++|+|+|++|+++.  .+.|+.++.+.
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            46779999966777777777889999999877653332  2334578899999999777776  34599988764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.89  E-value=0.21  Score=52.13  Aligned_cols=167  Identities=9%  Similarity=-0.007  Sum_probs=101.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCC----CC----CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           81 RRGLASWVEAESLHHLRPKY----CP----LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t----~~----L~gH~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      +...++-...+.|..++...    ..    +.........+++++.+..|+ +-...+.|.++|.........+......
T Consensus        42 ~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~  121 (316)
T 1ijq_A           42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK  121 (316)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred             CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCC
Confidence            34444555567788887664    11    112224567899987555554 4456789999998754433334434456


Q ss_pred             cEEEEEccCCCCEEEEEeCC-CcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccC
Q 004785          152 PWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSS  227 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~D-gtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~  227 (730)
                      ...++++|.++.++++.... +.|...++......... ..-...+.++|++++..|+.+..  +.|..+|+.....   
T Consensus       122 P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~---  198 (316)
T 1ijq_A          122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR---  198 (316)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---
T ss_pred             cceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce---
Confidence            88999998555555554443 68888888643332222 23356789999999988888873  4599999875322   


Q ss_pred             CeEEec---CCCCeEEEEEccCCCeEEEE
Q 004785          228 PRIVLR---TRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       228 ~~~l~~---h~~~V~sVaFSPdG~~Llat  253 (730)
                       ..+..   .......+++.  +..++.+
T Consensus       199 -~~~~~~~~~~~~P~giav~--~~~ly~~  224 (316)
T 1ijq_A          199 -KTILEDEKRLAHPFSLAVF--EDKVFWT  224 (316)
T ss_dssp             -EEEEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred             -EEEeecCCccCCcEEEEEE--CCEEEEE
Confidence             12221   22346677774  3345544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.82  E-value=0.043  Score=57.93  Aligned_cols=163  Identities=10%  Similarity=-0.026  Sum_probs=104.3

Q ss_pred             CCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeE-EEEEecCCCCcEEEEEccCC
Q 004785           89 EAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPLN  161 (730)
Q Consensus        89 ~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~-l~~l~gH~~~V~sVafSP~d  161 (730)
                      ....|+.++++...     +......+.+++|++.+..| .+-...+.|+.++...+.. ...+.........+++.+.+
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            35567777776542     11112346789999854444 4545578999999876632 12233333457789998756


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCCC
Q 004785          162 PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRS  237 (730)
Q Consensus       162 g~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~~  237 (730)
                      ++++++-...+.|.++++......... ........++++|.+..|+....   ..|+..+++.....   ......-..
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~~~~~~l~~  167 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF---IIINSEIYW  167 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCSC
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE---EEEECCCCC
Confidence            777777777889999998754433333 34456789999998777777662   34888887643321   122223346


Q ss_pred             eEEEEEccCCCeEEEEE
Q 004785          238 LRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       238 V~sVaFSPdG~~Llatg  254 (730)
                      ...|+|++++..|..+-
T Consensus       168 Pnglavd~~~~~lY~aD  184 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWAD  184 (318)
T ss_dssp             EEEEEEETTTTEEEEEE
T ss_pred             ccEEEEeccCCEEEEEE
Confidence            78999999887777664

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.81  E-value=0.086  Score=54.36  Aligned_cols=152  Identities=9%  Similarity=0.113  Sum_probs=99.1

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEECCCCeEEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLAS-THGDHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaS-gS~DgtVrVWDl~tg~~l~~l~g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      .+.+-...+..++|+|+++.|++ ...++.|...|.. ++.++.+.- -......|++.+ ++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEc
Confidence            35556667999999998766655 5668889999987 888887742 224578899988 7777777667788999987


Q ss_pred             CCCeE---EEEe-------cCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEe-------cCCCCeEEE
Q 004785          180 STAEC---IGSR-------DFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVL-------RTRRSLRAV  241 (730)
Q Consensus       180 ~tg~~---i~~l-------~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~-------~h~~~V~sV  241 (730)
                      .....   +...       ..+.....++|+|+++.|+++.... ..||.++............       .....+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            65432   1222       1344579999999998888877433 4444443100000011111       123467899


Q ss_pred             EEccCCCeEEEEEe
Q 004785          242 HFHPHAAPLLLTAE  255 (730)
Q Consensus       242 aFSPdG~~Llatgs  255 (730)
                      +|+|....+++.+.
T Consensus       179 ~~dp~tg~lliLS~  192 (255)
T 3qqz_A          179 EFNQQKNTLLVLSH  192 (255)
T ss_dssp             EEETTTTEEEEEET
T ss_pred             EEcCCCCeEEEEEC
Confidence            99998776666554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.051  Score=63.79  Aligned_cols=169  Identities=12%  Similarity=0.038  Sum_probs=113.6

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe---
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH---  146 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~L~-------gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~---  146 (730)
                      ..+....|+.|..++-|..|+..+..+.       .....|.++...++|.+.+ |+.++-|..+|..+++.. .+.   
T Consensus       369 ~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~  446 (781)
T 3v9f_A          369 CDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEK  446 (781)
T ss_dssp             EECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTT
T ss_pred             EEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCC
Confidence            3456678998987777888887654221       2345699999988876554 666677899998877643 332   


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC------CCCeEEEEEcCCCCEEEEEECCeEEEEEcC
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF------YRPIASIAFHASGELLAVASGHKLYIWRYN  220 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h------~~~V~sVafSPdG~~LAsgSdd~I~VWDl~  220 (730)
                      .....|.++...+ ++.+.+ |+. +-|.++|..+++.......      ...|.++..+++|++.+...+++|..||..
T Consensus       447 ~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~  523 (781)
T 3v9f_A          447 NELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPD  523 (781)
T ss_dssp             TCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTT
T ss_pred             CCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCC
Confidence            1345688888876 555554 444 5699999887765443221      357899999999986655445679889887


Q ss_pred             CCccccCCeEEec---CCCCeEEEEEccCCCeEEEE
Q 004785          221 MREETSSPRIVLR---TRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       221 t~~~~~~~~~l~~---h~~~V~sVaFSPdG~~Llat  253 (730)
                      +.+...   ....   ....|.++...++|...+.+
T Consensus       524 ~~~~~~---~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          524 MQLVRK---FNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             CCEEEE---ECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             CCeEEE---ccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence            654321   1101   24578999999999966655

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.79  E-value=0.051  Score=62.70  Aligned_cols=161  Identities=10%  Similarity=0.055  Sum_probs=98.3

Q ss_pred             CeEEEEeCCCCCC------CCCC--------CCeEEEEEC-CCC---CEEEEEeCCCeEEEEECCCCeEEEEEecCC---
Q 004785           91 ESLHHLRPKYCPL------SPPP--------RSTIAAAFS-PDG---KTLASTHGDHTVKIIDCQTGSCLKVLHGHR---  149 (730)
Q Consensus        91 gsIrlWd~~t~~L------~gH~--------~~Vt~lafS-PDG---~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~---  149 (730)
                      .+|.-+|.+++++      ..|.        ..+. +... .+|   +.++.++.+|.++++|.++|+.+...+...   
T Consensus       278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  356 (599)
T 1w6s_A          278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN  356 (599)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             ceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence            3688888887742      2332        2222 3332 567   467778899999999999999887654211   


Q ss_pred             ----------CCc--------------------------EEEEEccCCCCEEEEE-------------------------
Q 004785          150 ----------RTP--------------------------WVVRFHPLNPTIIASG-------------------------  168 (730)
Q Consensus       150 ----------~~V--------------------------~sVafSP~dg~lLaSg-------------------------  168 (730)
                                .++                          ..++++| +..+++..                         
T Consensus       357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~  435 (599)
T 1w6s_A          357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGAT  435 (599)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC-CCCEEEEeccccceeeecccccccCCcceeccc
Confidence                      011                          2356777 44444332                         


Q ss_pred             --------e------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEec
Q 004785          169 --------S------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       169 --------S------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~  233 (730)
                              +      .++.|..||+.+++.+.......+..+-.+.-.|.+|++++ ++.|+.||.++++.+-.  ....
T Consensus       436 ~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~--~~l~  513 (599)
T 1w6s_A          436 LNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWK--FKIP  513 (599)
T ss_dssp             EEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECS
T ss_pred             ceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEE--eeCC
Confidence                    1      34789999999999888775443333222333567777777 45599999999987541  1122


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ......-+.|..+|+.+++...
T Consensus       514 ~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          514 SGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             SCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCcEeccEEEEeCCEEEEEEEc
Confidence            2122233556678886666554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.77  E-value=0.016  Score=63.83  Aligned_cols=142  Identities=11%  Similarity=0.151  Sum_probs=87.4

Q ss_pred             CCeEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-CC----cEEEEECCC
Q 004785          108 RSTIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-DH----EVRLWNAST  181 (730)
Q Consensus       108 ~~Vt~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~-Dg----tVrLWDl~t  181 (730)
                      .....++|+| ++..|+.+...+.|+.+|..+++..... ........|+|++ +++.|+.+.. ++    .+.+.+. .
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~  213 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E  213 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence            3567899998 4666776666588999999877644433 3455688999999 7774444443 22    2333443 3


Q ss_pred             CeEE--EEecCCCCeEEEEEcC-CCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          182 AECI--GSRDFYRPIASIAFHA-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       182 g~~i--~~l~h~~~V~sVafSP-dG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +...  ..+........++++| +|.++++-. .++|+.+|........  ..........+.++|+|+|++|+.+.
T Consensus       214 g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          214 SGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             GTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             CceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            3221  2222233456788999 555444433 4569999987654311  11122234578999999999666654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.75  E-value=0.1  Score=62.27  Aligned_cols=166  Identities=10%  Similarity=0.009  Sum_probs=109.5

Q ss_pred             EEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCC----eEEEEEecCCCCcEEEEE
Q 004785           86 SWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTG----SCLKVLHGHRRTPWVVRF  157 (730)
Q Consensus        86 Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg----~~l~~l~gH~~~V~sVaf  157 (730)
                      .......|+..++...   .+......+..|+|++....|+ +-...+.|+.+++...    .....+.........|++
T Consensus       399 l~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv  478 (791)
T 3m0c_C          399 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  478 (791)
T ss_dssp             EEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             ccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence            3445566777776544   2334456788999998555554 4455688999998653    233444445566788999


Q ss_pred             ccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEec
Q 004785          158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       158 SP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      .+.+++++++-...+.|.+.++........+. .-.....|+++|.+.+|+....   .+|.+.++.......   .+..
T Consensus       479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~---lv~~  555 (791)
T 3m0c_C          479 DWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTE  555 (791)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECS
T ss_pred             eecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE---EEeC
Confidence            98566777787788999999998655433332 3456889999998777777762   348888886543311   2223


Q ss_pred             CCCCeEEEEEccCCCeEEEEE
Q 004785          234 TRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .-.....|++++.+..|..+-
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD  576 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVD  576 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEecCCCeEEEEe
Confidence            345789999998877776663

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.62  E-value=0.27  Score=53.32  Aligned_cols=170  Identities=9%  Similarity=-0.024  Sum_probs=104.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC-------C-CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCC
Q 004785           80 ARRGLASWVEAESLHHLRPKYC-------P-LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRR  150 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~-------~-L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~  150 (730)
                      .+...++-...+.|+.+++...       . +.........+++.+.+..| ++-...+.|.+.++........+.....
T Consensus       123 ~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~  202 (400)
T 3p5b_L          123 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS  202 (400)
T ss_dssp             TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC
T ss_pred             cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC
Confidence            3444445556778888887541       1 22234567899999854444 4445578999999876655445554555


Q ss_pred             CcEEEEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCcccc
Q 004785          151 TPWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETS  226 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~  226 (730)
                      ....|+++|.++.++.+-.. .+.|...++.......... .-...+.+++++++..|+.+..  +.|..+|++......
T Consensus       203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~  282 (400)
T 3p5b_L          203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  282 (400)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEE
T ss_pred             CcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEE
Confidence            68899999955555555433 4789999987544333332 2357789999999998888873  459999986543211


Q ss_pred             CCeEEec--CCCCeEEEEEccCCCeEEEEE
Q 004785          227 SPRIVLR--TRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       227 ~~~~l~~--h~~~V~sVaFSPdG~~Llatg  254 (730)
                         ....  .-.....+++  ++..++.+.
T Consensus       283 ---~~~~~~~l~~P~gl~v--~~~~lywtd  307 (400)
T 3p5b_L          283 ---ILEDEKRLAHPFSLAV--FEDKVFWTD  307 (400)
T ss_dssp             ---EEECSSTTSSEEEEEE--ETTEEEEEE
T ss_pred             ---EEeCCCCCCCCEEEEE--eCCEEEEec
Confidence               2221  1234556666  344455543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.62  E-value=0.081  Score=54.59  Aligned_cols=160  Identities=12%  Similarity=0.003  Sum_probs=90.9

Q ss_pred             eEEEEeCCCCCCC-----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-EEEEec---------CCCCcEEEE
Q 004785           92 SLHHLRPKYCPLS-----PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC-LKVLHG---------HRRTPWVVR  156 (730)
Q Consensus        92 sIrlWd~~t~~L~-----gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~-l~~l~g---------H~~~V~sVa  156 (730)
                      .|..++..++++.     ........+++.+++..+++-..++.|+++|..+++. +....+         .....+.| 
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence            4555665554321     1122345556555555555544688999999876532 221111         11234555 


Q ss_pred             EccCCCCEEEEEeCCCcEEEEECCC-CeE--EEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEe
Q 004785          157 FHPLNPTIIASGSLDHEVRLWNAST-AEC--IGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVL  232 (730)
Q Consensus       157 fSP~dg~lLaSgS~DgtVrLWDl~t-g~~--i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~  232 (730)
                       +++++.++++-...+.|..+|+.. ++.  ...+........++++++|+++++.. .+.|.++|.. ++... ...+.
T Consensus       175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~-~~~~~  251 (306)
T 2p4o_A          175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTI-IAQAE  251 (306)
T ss_dssp             -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEE-EECGG
T ss_pred             -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEE-Eeecc
Confidence             773345666666788999999875 331  11121123456789999998655444 4569999875 33211 00111


Q ss_pred             cCCCCeEEEEEc---cCCCeEEEEEe
Q 004785          233 RTRRSLRAVHFH---PHAAPLLLTAE  255 (730)
Q Consensus       233 ~h~~~V~sVaFS---PdG~~Llatgs  255 (730)
                      ..-....+++|.   ||+++|+++..
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             cccCCceEEEEecccCCCCEEEEECC
Confidence            123568999999   89887777654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.51  E-value=0.17  Score=59.24  Aligned_cols=173  Identities=4%  Similarity=-0.062  Sum_probs=114.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCCCC-------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCPLS-------------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC  141 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~-------------gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~  141 (730)
                      ....|....|+.|..++-|..++.....+.             -....|.++...++|.+ ..|+.++-|.+||..++..
T Consensus       317 ~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~  395 (781)
T 3v9f_A          317 YIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVA  395 (781)
T ss_dssp             EEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEE
T ss_pred             EEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeE
Confidence            334566778999998888888987754321             02346999999888764 4566666688899765543


Q ss_pred             EEEE---ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEECCeEE
Q 004785          142 LKVL---HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHKLY  215 (730)
Q Consensus       142 l~~l---~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSdd~I~  215 (730)
                      ....   ......|.++...+ ++.+.+ |+.++-|..+|..+++......   ....|.++..+++|++. .|+.++|.
T Consensus       396 ~~~~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~~Gl~  472 (781)
T 3v9f_A          396 IYNKENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTHAGVF  472 (781)
T ss_dssp             ECC-----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEETTEEE
T ss_pred             EEccCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEECCceE
Confidence            2111   12335688888876 565555 6666779999998876544321   34678999998888744 45557899


Q ss_pred             EEEcCCCccccCCeEEecC-----CCCeEEEEEccCCCeEEEEE
Q 004785          216 IWRYNMREETSSPRIVLRT-----RRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h-----~~~V~sVaFSPdG~~Llatg  254 (730)
                      +||..+++...   .....     ...|.++...++|+..+.+.
T Consensus       473 ~~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt~  513 (781)
T 3v9f_A          473 VIDLASKKVIH---HYDTSNSQLLENFVRSIAQDSEGRFWIGTF  513 (781)
T ss_dssp             EEESSSSSCCE---EECTTTSSCSCSCEEEEEECTTCCEEEEES
T ss_pred             EEeCCCCeEEe---cccCcccccccceeEEEEEcCCCCEEEEEc
Confidence            99987764321   11111     35789999999999666653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.48  E-value=0.35  Score=55.98  Aligned_cols=162  Identities=7%  Similarity=-0.048  Sum_probs=109.7

Q ss_pred             CCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCC
Q 004785           89 EAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (730)
Q Consensus        89 ~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg  162 (730)
                      ....|+..+++...     ....-..+..++|++++..|+.+ ..++.|+.+++........+.........+++.+.++
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            56678888876542     11234568899999966665544 4578999999876544444443335678899987567


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEE---CCeEEEEEcCCCccccCCeEEecCCCCe
Q 004785          163 TIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVAS---GHKLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgS---dd~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      +++++-...+.|.+.|+........+ ..-.....++++|....|+...   ..+|...++.....    ..+...-...
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----~~l~~~~~~P  168 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----TTLVPNVGRA  168 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----EEEECSCSSE
T ss_pred             EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce----EEEECCCCCc
Confidence            77777777889999999755433333 3345678999999777777666   23488787765442    2333455678


Q ss_pred             EEEEEccCCCeEEEEE
Q 004785          239 RAVHFHPHAAPLLLTA  254 (730)
Q Consensus       239 ~sVaFSPdG~~Llatg  254 (730)
                      ..|++++++..|..+-
T Consensus       169 ~GlalD~~~~~LY~aD  184 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTD  184 (628)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             ceEEEccccCEEEEEE
Confidence            8999999888776654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.43  E-value=0.11  Score=56.02  Aligned_cols=173  Identities=10%  Similarity=0.090  Sum_probs=107.1

Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCCCC-CCeEEEEECCC----CCE--EEEEeC----CCeEEEEEC--CCCeEEEEEec-
Q 004785           82 RGLASWVEAESLHHLRPKYCPLSPPP-RSTIAAAFSPD----GKT--LASTHG----DHTVKIIDC--QTGSCLKVLHG-  147 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~L~gH~-~~Vt~lafSPD----G~~--LaSgS~----DgtVrVWDl--~tg~~l~~l~g-  147 (730)
                      ..++.-.+.+-+.+||+.-..+.... +.++.+..-|+    |+.  |+.+++    +++|.+|++  .+++ +..+.. 
T Consensus        41 s~ii~t~k~~gL~Vydl~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~  119 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDP  119 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCT
T ss_pred             cEEEEEcCCCCEEEEcCCCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecccc
Confidence            33455556667888888433222112 56777777662    332  333333    578999977  3443 555521 


Q ss_pred             -----CC-CCcEEEEE--ccCCCC-EEEEEeCCCcEEEEECC-------CCeEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 004785          148 -----HR-RTPWVVRF--HPLNPT-IIASGSLDHEVRLWNAS-------TAECIGSRDFYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       148 -----H~-~~V~sVaf--SP~dg~-lLaSgS~DgtVrLWDl~-------tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd  211 (730)
                           .. ..+..+++  +|.++. +++....++.+..|++.       +.+.++.+.....+..+..++....|+++-.
T Consensus       120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eE  199 (355)
T 3amr_A          120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEE  199 (355)
T ss_dssp             TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred             ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecc
Confidence                 11 56777888  664454 67778889999999883       3456777888889999999999999999986


Q ss_pred             Ce-EEEEEcCCCcccc-CCeEEec--C-CCCeEEEEE--ccCCC-eEEEEEe
Q 004785          212 HK-LYIWRYNMREETS-SPRIVLR--T-RRSLRAVHF--HPHAA-PLLLTAE  255 (730)
Q Consensus       212 d~-I~VWDl~t~~~~~-~~~~l~~--h-~~~V~sVaF--SPdG~-~Llatgs  255 (730)
                      +. |..+|.+-..... .......  + ...+..|++  .++|+ +|++++.
T Consensus       200 d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ  251 (355)
T 3amr_A          200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ  251 (355)
T ss_dssp             TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence            54 7667754222100 0111111  1 246888888  56676 6776663

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.42  E-value=0.54  Score=48.31  Aligned_cols=165  Identities=12%  Similarity=0.066  Sum_probs=96.2

Q ss_pred             EeCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---EEEEe------cCCCCc
Q 004785           87 WVEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLH------GHRRTP  152 (730)
Q Consensus        87 gs~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~---l~~l~------gH~~~V  152 (730)
                      ..+++.|...|....     .+.+ ....-.+++.+++.++++.-.++.+.++++.....   +....      ......
T Consensus        45 ~d~~~~I~~ld~~g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~  123 (255)
T 3qqz_A           45 INKPAAIVEMTTNGDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGF  123 (255)
T ss_dssp             EETTEEEEEEETTCCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCC
T ss_pred             ECCCCeEEEEeCCCCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCc
Confidence            445666666666521     1222 24578899998887766655678899998765432   23332      123446


Q ss_pred             EEEEEccCCCCEEEEEeCCC-cEEEEEC-CCCeEEEEec--------CCCCeEEEEEcCCCCEEEEEECC--eEEEEEcC
Q 004785          153 WVVRFHPLNPTIIASGSLDH-EVRLWNA-STAECIGSRD--------FYRPIASIAFHASGELLAVASGH--KLYIWRYN  220 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~Dg-tVrLWDl-~tg~~i~~l~--------h~~~V~sVafSPdG~~LAsgSdd--~I~VWDl~  220 (730)
                      ..++|+|.++.++++.-.+. .|+.|+- .....+..+.        +...+.+++++|....|++.++.  .|.++|..
T Consensus       124 EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~  203 (255)
T 3qqz_A          124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV  203 (255)
T ss_dssp             EEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence            89999994444555444444 4555551 1111112111        23467899999987777777743  38888876


Q ss_pred             CCccccCCeEEecC-------CCCeEEEEEccCCCeEEEEEe
Q 004785          221 MREETSSPRIVLRT-------RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       221 t~~~~~~~~~l~~h-------~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .. ... ...+...       -..-..|+|.++|+ |..+++
T Consensus       204 g~-~~~-~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE  242 (255)
T 3qqz_A          204 GE-VIG-EMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSE  242 (255)
T ss_dssp             CC-EEE-EEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEET
T ss_pred             CC-EEE-EEEcCCccCCcccccCCCCeeEECCCCC-EEEEcC
Confidence            44 322 1122211       13668999999998 555554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.41  E-value=0.36  Score=57.53  Aligned_cols=143  Identities=10%  Similarity=-0.043  Sum_probs=93.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC--------CCCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           81 RRGLASWVEAESLHHLRPKYC--------PLSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~--------~L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      +...++-...+.|+.+++...        .+.........|++.+.++.|+.+ ...+.|.+.++........+......
T Consensus       436 ~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~  515 (791)
T 3m0c_C          436 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK  515 (791)
T ss_dssp             TEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC
T ss_pred             CeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC
Confidence            344445556677877777532        122234456789999877655554 55789999998755544444445556


Q ss_pred             cEEEEEccCCCCEEEEEeCC-CcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCc
Q 004785          152 PWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMRE  223 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~D-gtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~  223 (730)
                      ...|+++|.++.++++-..+ +.|.+.++........+. .-...+.|++++.+..|+.+..  +.|..+|+....
T Consensus       516 P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            88999999556666654333 789999987544433333 2357899999998888888873  449999986543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.39  E-value=0.43  Score=50.14  Aligned_cols=169  Identities=9%  Similarity=-0.069  Sum_probs=102.4

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~L-----~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      .+...++-...+.|..++......     .........+++.+.+..| ++-...+.|.++++........+........
T Consensus        46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~  125 (318)
T 3sov_A           46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPR  125 (318)
T ss_dssp             GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCcc
Confidence            344445555677888888765421     1122346678998755444 4445578999999865443333334456678


Q ss_pred             EEEEccCCCCEEEEEe-CCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCe
Q 004785          154 VVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR  229 (730)
Q Consensus       154 sVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~  229 (730)
                      .++++|.++.++.+-. ..+.|...++.......... .-...+.++|+|++..|+.+..  +.|+.+|++.....   .
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~  202 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ---A  202 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---E
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE---E
Confidence            9999984455555542 35788888886433222222 2345689999999888888873  45999998753321   1


Q ss_pred             EEecCCCCeEEEEEccCCCeEEEE
Q 004785          230 IVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       230 ~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ...........+++..  ..++.+
T Consensus       203 ~~~~~~~~P~glav~~--~~lywt  224 (318)
T 3sov_A          203 VVKGSLPHPFALTLFE--DILYWT  224 (318)
T ss_dssp             EECSCCSCEEEEEEET--TEEEEE
T ss_pred             EecCCCCCceEEEEeC--CEEEEE
Confidence            2222344566777753  334444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.20  E-value=0.091  Score=60.67  Aligned_cols=176  Identities=9%  Similarity=-0.011  Sum_probs=102.6

Q ss_pred             cCCCEEEEEe-CCCeEEEEeCCCCC---CC--CCCCCeEEEEECCCCCEEEEEe-CC-----CeEEEEECCCCeEEEE--
Q 004785           79 DARRGLASWV-EAESLHHLRPKYCP---LS--PPPRSTIAAAFSPDGKTLASTH-GD-----HTVKIIDCQTGSCLKV--  144 (730)
Q Consensus        79 d~g~~L~Sgs-~DgsIrlWd~~t~~---L~--gH~~~Vt~lafSPDG~~LaSgS-~D-----gtVrVWDl~tg~~l~~--  144 (730)
                      .+++.++.|+ .+..+.+||..+.+   +.  .....-.++++.+||++++.|+ .+     ..+.+||..+++-...  
T Consensus       252 ~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~  331 (656)
T 1k3i_A          252 GNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN  331 (656)
T ss_dssp             TTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT
T ss_pred             CCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCC
Confidence            4556666666 45689999987652   11  1122234566667899999998 34     5799999877642221  


Q ss_pred             -----------------------EecCCC---------------------------------------CcEEEEEccCCC
Q 004785          145 -----------------------LHGHRR---------------------------------------TPWVVRFHPLNP  162 (730)
Q Consensus       145 -----------------------l~gH~~---------------------------------------~V~sVafSP~dg  162 (730)
                                             +-+..+                                       .-.++.|...++
T Consensus       332 ~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~  411 (656)
T 1k3i_A          332 AKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKG  411 (656)
T ss_dssp             SCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTT
T ss_pred             ccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCC
Confidence                                   000000                                       012233323367


Q ss_pred             CEEEEEeCCC-----------cEEEEECCCCeEEEEe----cCCCCeEEEEEcCCCCEEEEEEC------------CeEE
Q 004785          163 TIIASGSLDH-----------EVRLWNASTAECIGSR----DFYRPIASIAFHASGELLAVASG------------HKLY  215 (730)
Q Consensus       163 ~lLaSgS~Dg-----------tVrLWDl~tg~~i~~l----~h~~~V~sVafSPdG~~LAsgSd------------d~I~  215 (730)
                      ++++.|+.++           .|.+||..+.+.....    .....-.+.+..|+|+++++|+.            ..+.
T Consensus       412 ~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~  491 (656)
T 1k3i_A          412 KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE  491 (656)
T ss_dssp             EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCE
T ss_pred             eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceE
Confidence            7788877542           6888888877655443    22233345667789999999872            2389


Q ss_pred             EEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +||..+.+-.. .......+.......+.+||+.+++++.
T Consensus       492 ~ydp~t~~W~~-~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          492 IYVPEQDTFYK-QNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEGGGTEEEE-CCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EEcCCCCceee-cCCCCCccccccHhhcCCCcEEEecCCC
Confidence            99987764321 1111112223344556799997666664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.19  E-value=0.093  Score=56.24  Aligned_cols=143  Identities=12%  Similarity=0.117  Sum_probs=92.7

Q ss_pred             CeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEE-Eec----CCC--CcEEEEE---ccCCCCEEEEEe--------
Q 004785          109 STIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKV-LHG----HRR--TPWVVRF---HPLNPTIIASGS--------  169 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~-l~g----H~~--~V~sVaf---SP~dg~lLaSgS--------  169 (730)
                      .-.+++|.+....|+.++ ..++|..||...+..... +.+    ...  .+..|.|   .| ++.++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence            345789988555555555 689999999876654333 222    111  3578999   68 677777543        


Q ss_pred             -----CCCcEEEEECC---CCeEEEEecC--------------CCCeEEEEEcCCCCEEEEEE-C-CeEEEEEcCCCccc
Q 004785          170 -----LDHEVRLWNAS---TAECIGSRDF--------------YRPIASIAFHASGELLAVAS-G-HKLYIWRYNMREET  225 (730)
Q Consensus       170 -----~DgtVrLWDl~---tg~~i~~l~h--------------~~~V~sVafSPdG~~LAsgS-d-d~I~VWDl~t~~~~  225 (730)
                           .+..|..+|+.   +++.+.....              ....+.++.+++|+..++++ . +.|..++...... 
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-  171 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-  171 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-
Confidence                 26779999999   7877665431              12478999999999888777 4 4466666544321 


Q ss_pred             cCCeEEe----cCCCCeEEEEEccCCCeEEEEE
Q 004785          226 SSPRIVL----RTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       226 ~~~~~l~----~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      . .....    ......+.++++|+|+.|++..
T Consensus       172 ~-~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~  203 (334)
T 2p9w_A          172 S-TFAWESGNGGQRPGYSGITFDPHSNKLIAFG  203 (334)
T ss_dssp             E-EEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred             e-eeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence            1 01111    1123467999999999777654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.15  E-value=0.25  Score=51.80  Aligned_cols=141  Identities=9%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEEC--CCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDC--QTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl--~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                      ++...+..+.+.+++.+++.+......+-+|-  .+-+.+.  ......+..+.+.+ ++.+++ ++.+|.+++++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~-~g~~~~-~~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTP-DGRLWM-IVNGGKIAFSDPDNS  235 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECT-TSCEEE-EETTTEEEEEETTEE
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECC-CCCEEE-EeCCceEEEecCCCC
Confidence            45667999999999888877654443444442  2223321  23456788899988 666554 456788887753334


Q ss_pred             eEEEEec-----CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEe---cCCCCeEEEEEccCCCeEEEEE
Q 004785          183 ECIGSRD-----FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVL---RTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       183 ~~i~~l~-----h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~---~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +....+.     ....+..+.|.+++++++++.++.|+ +..+.++.-.   .+.   .....++.+.|.++++ +++.+
T Consensus       236 ~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW~---~~~~~~~~~~~~~~v~~~~~~~-~~~~G  310 (327)
T 2xbg_A          236 ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTWQ---QDVDVKKVPSNFYKILFFSPDQ-GFILG  310 (327)
T ss_dssp             EEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSCE---ECGGGTTSSSCCCEEEEEETTE-EEEEC
T ss_pred             CeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCcccE---EcCccCCCCCCeEEEEEECCCc-eEEEc
Confidence            4333222     22358899999999888888777663 4444443211   222   1235678898986665 44443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.15  E-value=0.16  Score=54.42  Aligned_cols=141  Identities=9%  Similarity=0.006  Sum_probs=95.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC-----CCC----CC--CCeEEEEE---CCCCCEEEEEe-------------CCCeEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP-----LSP----PP--RSTIAAAF---SPDGKTLASTH-------------GDHTVK  132 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~-----L~g----H~--~~Vt~laf---SPDG~~LaSgS-------------~DgtVr  132 (730)
                      .+..+++-...++|..|+...+.     +.+    ..  ..+..|.|   .|+++++++..             .+..|.
T Consensus        24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~  103 (334)
T 2p9w_A           24 RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFH  103 (334)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEE
T ss_pred             CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEE
Confidence            34444455577888888876441     111    11  13589999   68887777543             267899


Q ss_pred             EEECC---CCeEEEEEe--cC-----------CCCcEEEEEccCCCCEEEEEeCC-CcEEEEECCCCeEEEEe-cC----
Q 004785          133 IIDCQ---TGSCLKVLH--GH-----------RRTPWVVRFHPLNPTIIASGSLD-HEVRLWNASTAECIGSR-DF----  190 (730)
Q Consensus       133 VWDl~---tg~~l~~l~--gH-----------~~~V~sVafSP~dg~lLaSgS~D-gtVrLWDl~tg~~i~~l-~h----  190 (730)
                      .||+.   +++.+....  ..           ......++..+ +++..++++.- +.|...|.......... ..    
T Consensus       104 ~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~  182 (334)
T 2p9w_A          104 SFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGG  182 (334)
T ss_dssp             EEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSS
T ss_pred             EEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcc
Confidence            99999   787765543  11           12477899999 89999998888 88888887643222111 11    


Q ss_pred             -CCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004785          191 -YRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (730)
Q Consensus       191 -~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t  221 (730)
                       ....+.|+++|+|+.|++... +.|..+|+..
T Consensus       183 ~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          183 QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence             224679999999998888764 4499999884

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.10  E-value=0.016  Score=66.27  Aligned_cols=81  Identities=9%  Similarity=0.074  Sum_probs=56.3

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCe--EEEEEcCCCCE
Q 004785          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGEL  205 (730)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V--~sVafSPdG~~  205 (730)
                      ++.|..||+.+|+.+..++... .+....+.. .+.+++.++.|+.|+.||.++|+.+..+.....+  ..+.+..+|+.
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEECCCCCEEEEecCCC-CccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            4789999999999887775432 233333333 4567777899999999999999999887644333  23445678875


Q ss_pred             EEEEE
Q 004785          206 LAVAS  210 (730)
Q Consensus       206 LAsgS  210 (730)
                      ++...
T Consensus       521 yv~~~  525 (571)
T 2ad6_A          521 YIGSM  525 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.06  E-value=0.42  Score=51.57  Aligned_cols=161  Identities=11%  Similarity=0.075  Sum_probs=97.5

Q ss_pred             CCCeEEEEeCCCC--C-----CCC-----CCCCeEEEEECC--CCC-EEEEE-eC--CCeEEEEECCCC-e---EEEEEe
Q 004785           89 EAESLHHLRPKYC--P-----LSP-----PPRSTIAAAFSP--DGK-TLAST-HG--DHTVKIIDCQTG-S---CLKVLH  146 (730)
Q Consensus        89 ~DgsIrlWd~~t~--~-----L~g-----H~~~Vt~lafSP--DG~-~LaSg-S~--DgtVrVWDl~tg-~---~l~~l~  146 (730)
                      .+|.|.++|.+..  +     +.+     ..-....+.+.+  +|. +|+.+ ..  +.+|.+|++..+ .   .+..+.
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            6888999998632  1     222     223567777755  454 34443 33  567888776543 2   223444


Q ss_pred             cCC-CCcEEEEEccCCCCEEEEEeC-----------------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEE
Q 004785          147 GHR-RTPWVVRFHPLNPTIIASGSL-----------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV  208 (730)
Q Consensus       147 gH~-~~V~sVafSP~dg~lLaSgS~-----------------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAs  208 (730)
                      +.. ...+.+.+.+ ++.++++...                 .+.|..+|.  ++.......-...+.++|+|||+.|++
T Consensus       161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv  237 (355)
T 3sre_A          161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI  237 (355)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence            322 3478899999 8887777541                 244555555  333333333355789999999999988


Q ss_pred             EE--CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEcc-CCCeEEEE
Q 004785          209 AS--GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHP-HAAPLLLT  253 (730)
Q Consensus       209 gS--dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSP-dG~~Llat  253 (730)
                      +.  .++|+.||+...........+ ......-.+++.+ +|+..+++
T Consensus       238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEe
Confidence            87  355999998743322212222 3345677899999 59866544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.05  E-value=0.13  Score=58.00  Aligned_cols=140  Identities=14%  Similarity=0.098  Sum_probs=90.9

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC-------CCCCCeEEEEE-------CCCCCEEEEEeCCC-------eEEEEECCC-
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS-------PPPRSTIAAAF-------SPDGKTLASTHGDH-------TVKIIDCQT-  138 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~-------gH~~~Vt~laf-------SPDG~~LaSgS~Dg-------tVrVWDl~t-  138 (730)
                      +..+++....+.|++.|.+.+.+.       ........++|       +++|++|+.+...+       .|.+++... 
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~  231 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD  231 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred             CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence            334444444567999998876321       12235899999       99999777776543       366666443 


Q ss_pred             CeEE-----EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-------CCeE--------------EEEecCCC
Q 004785          139 GSCL-----KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-------TAEC--------------IGSRDFYR  192 (730)
Q Consensus       139 g~~l-----~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-------tg~~--------------i~~l~h~~  192 (730)
                      |...     ..+... .....++++|+++.++++-..++.|..+|+.       +++.              +.......
T Consensus       232 G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~  310 (496)
T 3kya_A          232 GTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS  310 (496)
T ss_dssp             SCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred             CceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence            2221     222221 2345789999777778888888899999997       5543              12233345


Q ss_pred             CeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785          193 PIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (730)
Q Consensus       193 ~V~sVafSPdG~~LAsgS--dd~I~VWDl~t  221 (730)
                      ....++|+|+|++|+++.  .+.|+.+|+..
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence            568999999999877776  34588877644

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.05  E-value=0.023  Score=65.17  Aligned_cols=82  Identities=17%  Similarity=0.255  Sum_probs=58.5

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeE--EEEEcCCCC-
Q 004785          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-  204 (730)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~--sVafSPdG~-  204 (730)
                      ++.|..||+.+|+.+..++... .+..-.... .+.+++.++.|+.++.||.++|+.+..+.....+.  -+.|..+|+ 
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            5789999999999887776432 222222222 45678889999999999999999999877555443  367778887 


Q ss_pred             EEEEEEC
Q 004785          205 LLAVASG  211 (730)
Q Consensus       205 ~LAsgSd  211 (730)
                      ++++.+.
T Consensus       543 Yv~~~~G  549 (582)
T 1flg_A          543 YLGVTVG  549 (582)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            5555543

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.05  E-value=0.097  Score=59.09  Aligned_cols=145  Identities=10%  Similarity=0.061  Sum_probs=88.4

Q ss_pred             CeEEEEECC-CCCEEEEEeC-CCeEEEEECCCCeEEEEEecCC---CCcEEEEE-------ccCCCCEEEEEeCCC----
Q 004785          109 STIAAAFSP-DGKTLASTHG-DHTVKIIDCQTGSCLKVLHGHR---RTPWVVRF-------HPLNPTIIASGSLDH----  172 (730)
Q Consensus       109 ~Vt~lafSP-DG~~LaSgS~-DgtVrVWDl~tg~~l~~l~gH~---~~V~sVaf-------SP~dg~lLaSgS~Dg----  172 (730)
                      ....|+|+| +...|+.+.. .+.|++.|++++.....+..-.   .....|+|       ++ +++.++.+...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            467999999 4555665554 4679999998887655544321   24788999       99 666555544433    


Q ss_pred             ---cEEEEECCC-CeEE-----EEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcC-------CCcc------c---
Q 004785          173 ---EVRLWNAST-AECI-----GSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYN-------MREE------T---  225 (730)
Q Consensus       173 ---tVrLWDl~t-g~~i-----~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~-------t~~~------~---  225 (730)
                         .|.+.+... ++..     ..+........++++|++..|+++.  ++.|+.+|+.       ++..      .   
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               266776443 2221     1222122445788999777666665  3459999987       4442      0   


Q ss_pred             -cCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          226 -SSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       226 -~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                       .............+.|+|+|+|++|..+-
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence             00111222344568999999999655543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.94  E-value=0.69  Score=53.37  Aligned_cols=164  Identities=9%  Similarity=-0.030  Sum_probs=103.1

Q ss_pred             eCCCeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeE-EEEEecCCCCcEEEEEccC
Q 004785           88 VEAESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSC-LKVLHGHRRTPWVVRFHPL  160 (730)
Q Consensus        88 s~DgsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~-l~~l~gH~~~V~sVafSP~  160 (730)
                      .+...|+..++...     .+.........++|++.+..|+.+. ..+.|+.+++..... ...+.........+++.+.
T Consensus        15 ~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~   94 (619)
T 3s94_A           15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL   94 (619)
T ss_dssp             ECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT
T ss_pred             eccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec
Confidence            34556666666532     1233455688999999766666554 467899999875532 2334333356889999985


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCC
Q 004785          161 NPTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRR  236 (730)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~  236 (730)
                      +++++++-...+.|.+.|+......... ..-.....|+++|.+.+|+....   .+|...+++.....   ......-.
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~---~l~~~~~~  171 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF---IIINSEIY  171 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCS
T ss_pred             CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE---EEEeCCCC
Confidence            6667777777889999999765433333 33445678999998777777662   34776676543321   12223345


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004785          237 SLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       237 ~V~sVaFSPdG~~Llatg  254 (730)
                      ....|++++++..|..+-
T Consensus       172 ~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          172 WPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             SEEEEEEETTTTEEEEEE
T ss_pred             CCcEEEEEccCCEEEEEe
Confidence            678999999877776653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.90  E-value=0.29  Score=51.40  Aligned_cols=187  Identities=10%  Similarity=0.001  Sum_probs=110.4

Q ss_pred             EEEECCCCCEEEEEeCC--------------CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe----CCCc
Q 004785          112 AAAFSPDGKTLASTHGD--------------HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS----LDHE  173 (730)
Q Consensus       112 ~lafSPDG~~LaSgS~D--------------gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS----~Dgt  173 (730)
                      +--|+++|.+|+.....              ..|+..++..++... +....    ...|++ +++.|+-..    .+..
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~~----~~~~s~-~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPDP----CIYASL-IGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECSC----EEEEEE-ETTEEEEEEESSSSCEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecCC----ccEEEE-eCCEEEEEeecCCCCce
Confidence            44567889998887653              468888887765433 32211    236777 555555544    3456


Q ss_pred             EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       174 VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      |+.-++..........+..    ..|+++|+.|+..+++.  |++.++......    .+..  ... ...++|++.+|+
T Consensus       131 Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~----~l~~--~~~-~~~~~P~g~~iy  199 (302)
T 3s25_A          131 LYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA----LFYD--CNC-YKPVVLDDTNVY  199 (302)
T ss_dssp             EEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE----EEEC--SCE-EEEEEEETTEEE
T ss_pred             EEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE----EEeC--CCc-cceeeecCCEEE
Confidence            7777777554444444432    45788999998887633  888888766532    2222  222 234669999887


Q ss_pred             EEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCccc
Q 004785          252 LTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATR  331 (730)
Q Consensus       252 atgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~  331 (730)
                      .+.....                     ..|...+........|...      .  .+.|++++++|++.....  ...+
T Consensus       200 ~t~~~~~---------------------~~I~~~~ldG~~~~~Lt~~------~--~~~~~~~g~~Iy~~~~~~--~~~i  248 (302)
T 3s25_A          200 YMDVNRD---------------------NAIVHVNINNPNPVVLTEA------N--IEHYNVYGSLIFYQRGGD--NPAL  248 (302)
T ss_dssp             EEEGGGT---------------------TEEEEECSSSCCCEECSCS------C--EEEEEEETTEEEEEECSS--SCEE
T ss_pred             EEEcCCC---------------------cEEEEEECCCCCeEEEeCC------C--cceEEECCCEEEEEECCC--CcEE
Confidence            7642110                     1233333333222222111      1  256899999997654433  3678


Q ss_pred             ceeecCCCcceeeec
Q 004785          332 TQQSLRSSSSVRLLT  346 (730)
Q Consensus       332 ~~~~~~ss~~~~l~~  346 (730)
                      ...+++++...+|..
T Consensus       249 ~~~~~DG~~r~~l~~  263 (302)
T 3s25_A          249 CVVKNDGTGFKELAK  263 (302)
T ss_dssp             EEEETTSCCCEEEEE
T ss_pred             EEEECCCCccEEeeC
Confidence            888898888777754

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=95.86  E-value=0.06  Score=62.67  Aligned_cols=144  Identities=13%  Similarity=0.055  Sum_probs=92.0

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC----C-CCCCeEEEEECC--CCCEEEEEeC------CCeEEEEECCCCeEEEEEec
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS----P-PPRSTIAAAFSP--DGKTLASTHG------DHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~----g-H~~~Vt~lafSP--DG~~LaSgS~------DgtVrVWDl~tg~~l~~l~g  147 (730)
                      +..|+.+..|+.|..+|.+++++.    . .......+..+|  .+..++.+..      ++.|+.+|.++|+.+..+..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            456778888999999999887421    1 100000111112  1335555543      58999999999999887753


Q ss_pred             CC-------------------------------CCcEEEEEccCCCCEEEEEeCCC-------------------cEEEE
Q 004785          148 HR-------------------------------RTPWVVRFHPLNPTIIASGSLDH-------------------EVRLW  177 (730)
Q Consensus       148 H~-------------------------------~~V~sVafSP~dg~lLaSgS~Dg-------------------tVrLW  177 (730)
                      ..                               .....+++.| ..++++.+..++                   .|..+
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            11                               0112468888 667777777665                   49999


Q ss_pred             ECCCCeEEEEecCC----------CCeEEEEEcCCCC---EEEEEEC-CeEEEEEcCCCccc
Q 004785          178 NASTAECIGSRDFY----------RPIASIAFHASGE---LLAVASG-HKLYIWRYNMREET  225 (730)
Q Consensus       178 Dl~tg~~i~~l~h~----------~~V~sVafSPdG~---~LAsgSd-d~I~VWDl~t~~~~  225 (730)
                      |..+|+.+..+...          .+.....+..+|+   .|+.++. +.++++|..+++.+
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            99999998876521          2233333344675   5667764 45999999998864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.78  E-value=0.014  Score=68.61  Aligned_cols=163  Identities=9%  Similarity=-0.002  Sum_probs=99.9

Q ss_pred             CCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCC----CeEEEEEecCCCCcEEEEEccC
Q 004785           89 EAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQT----GSCLKVLHGHRRTPWVVRFHPL  160 (730)
Q Consensus        89 ~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~t----g~~l~~l~gH~~~V~sVafSP~  160 (730)
                      ....|+..++....   +......+..++|++++..|+.+. ..+.|+.+++..    ......+.........|++.+.
T Consensus       384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            44567777776542   333344577899998776666553 467899999875    2222222222234567888864


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCC
Q 004785          161 NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRR  236 (730)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~  236 (730)
                      +++++++-...+.|.++|+........+. .......++++|.+.+|+.+..   ++|+++++......   ......-.
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~---~l~~~~l~  540 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY---SLVTENIQ  540 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC---EESCSSCS
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee---EEEeCCCC
Confidence            66777776677889999987655444333 2245678999997776665542   44887777543221   11112234


Q ss_pred             CeEEEEEccCCCeEEEEE
Q 004785          237 SLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       237 ~V~sVaFSPdG~~Llatg  254 (730)
                      ....|+|+|++.+|..+-
T Consensus       541 ~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          541 WPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             SCCCEEECTTTCCEEEEE
T ss_pred             CccEEEEeccCCEEEEEe
Confidence            567899999877776654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.68  E-value=0.28  Score=52.18  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=61.6

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEe---cCCCCcEEEEEccC---CCCEEEEEeCC-----CcEE
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLH---GHRRTPWVVRFHPL---NPTIIASGSLD-----HEVR  175 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~---gH~~~V~sVafSP~---dg~lLaSgS~D-----gtVr  175 (730)
                      ....++|.|||++++ +..++.|++++  +++..  ..+.   ........|+|+|+   ++.++++-..+     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            467999999998555 45679999998  45422  1111   12345789999993   35555554433     6788


Q ss_pred             EEECCCCeE-----EEE-ecC----CCCeEEEEEcCCCCEEEEEE
Q 004785          176 LWNASTAEC-----IGS-RDF----YRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       176 LWDl~tg~~-----i~~-l~h----~~~V~sVafSPdG~~LAsgS  210 (730)
                      .|+...++.     +.. +..    ......++|.|||.+.++.+
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            888775421     111 221    12346899999997555543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.61  E-value=0.14  Score=56.46  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=84.4

Q ss_pred             CCeEEEEECCC--CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC---Cc-EEEEECCC
Q 004785          108 RSTIAAAFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD---HE-VRLWNAST  181 (730)
Q Consensus       108 ~~Vt~lafSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D---gt-VrLWDl~t  181 (730)
                      .....++|+|+  +..|+.+...+.|+.+|..+++.... .........++|++ +++++++....   .. +...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence            45679999995  45565554448999999988875544 34455688999999 77765554321   12 33333222


Q ss_pred             CeE-EEEecCCCCeEEEEEcC-CCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          182 AEC-IGSRDFYRPIASIAFHA-SGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       182 g~~-i~~l~h~~~V~sVafSP-dG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      +.. ...+........++++| +|.+.++-. ++.|+.+|..++..... .........-..++|+|+|++|..+.
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCCCCCcccEEEeCCCCEEEEEe
Confidence            111 01222234456789999 555443333 34599999876653110 11112223345799999999666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.45  E-value=0.28  Score=52.43  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe-EEEEEe---cCCCCcEEEEEccC---CCCEEEEEeC---C----Cc
Q 004785          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS-CLKVLH---GHRRTPWVVRFHPL---NPTIIASGSL---D----HE  173 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~-~l~~l~---gH~~~V~sVafSP~---dg~lLaSgS~---D----gt  173 (730)
                      .....++|.|||++++ +..++.|+++| .+++ .+..+.   ........|+|+|+   ++.++++-+.   +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3467999999998555 45669999997 4565 222211   12345789999994   3566555442   3    56


Q ss_pred             EEEEECCCC--e---E--E-EEec--CCCCeEEEEEcCCCCEEEEEE
Q 004785          174 VRLWNASTA--E---C--I-GSRD--FYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       174 VrLWDl~tg--~---~--i-~~l~--h~~~V~sVafSPdG~~LAsgS  210 (730)
                      |..|+...+  .   .  + ..+.  .......++|.|||++.++.+
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence            888887654  1   1  1 1122  122346799999998666543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.42  E-value=0.43  Score=52.94  Aligned_cols=102  Identities=14%  Similarity=0.183  Sum_probs=62.5

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--EEec------CCCCcEEEEEccC---CCCEEEEEeC-------
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VLHG------HRRTPWVVRFHPL---NPTIIASGSL-------  170 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l~g------H~~~V~sVafSP~---dg~lLaSgS~-------  170 (730)
                      ....|+|.|||+++++-...+.|++++..+++...  .+..      ..+....|+|+|+   ++.++++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            46799999999877765444579888876665322  2221      1345678999994   4555555432       


Q ss_pred             -----CCcEEEEECCCC--e-----EEEE-ec--CCCCeEEEEEcCCCCEEEEEE
Q 004785          171 -----DHEVRLWNASTA--E-----CIGS-RD--FYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       171 -----DgtVrLWDl~tg--~-----~i~~-l~--h~~~V~sVafSPdG~~LAsgS  210 (730)
                           ...|..|++..+  +     .+.. +.  ..+....++|.|||++.++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 235666665432  1     1111 22  234578999999999666554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.34  E-value=0.49  Score=51.09  Aligned_cols=129  Identities=14%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             CCeEEEEeC--CCCCCC---C------CC-CCeEEEEE--CCC-CC-EEEEEeCCCeEEEEECC-------CCeEEEEEe
Q 004785           90 AESLHHLRP--KYCPLS---P------PP-RSTIAAAF--SPD-GK-TLASTHGDHTVKIIDCQ-------TGSCLKVLH  146 (730)
Q Consensus        90 DgsIrlWd~--~t~~L~---g------H~-~~Vt~laf--SPD-G~-~LaSgS~DgtVrVWDl~-------tg~~l~~l~  146 (730)
                      +++|.+|++  .++++.   .      .. ..+..+++  +++ ++ ++++...++.+..|++.       +++.++.|.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            578999955  444321   1      11 45667777  774 54 57777889999999882       345677776


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC-----CCeEEEEecC---CCCeEEEEE--cCCCC-EEEEEE--CCe
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS-----TAECIGSRDF---YRPIASIAF--HASGE-LLAVAS--GHK  213 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~-----tg~~i~~l~h---~~~V~sVaf--SPdG~-~LAsgS--dd~  213 (730)
                      .. ..+..+...+ ....|+.+-.|.-|..+|..     +++.+..+..   ...+..+++  .++|+ +|++++  ++.
T Consensus       178 lg-sq~EgcvvDd-~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          178 MN-SQTEGMAADD-EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             CS-SCEEEEEEET-TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             CC-CCcceEEEcC-CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            44 4688889988 77888888888777777755     3556655542   257888888  56777 777777  456


Q ss_pred             EEEEEcC
Q 004785          214 LYIWRYN  220 (730)
Q Consensus       214 I~VWDl~  220 (730)
                      ..|||..
T Consensus       256 ~~Vydr~  262 (355)
T 3amr_A          256 YAIYDRQ  262 (355)
T ss_dssp             EEEEESS
T ss_pred             EEEEECC
Confidence            9999986

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.23  E-value=1.8  Score=50.00  Aligned_cols=168  Identities=7%  Similarity=-0.074  Sum_probs=106.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      +...++-..++.|..++.....    +.........+++...+..|+.+ ...+.|.+.++........+.........|
T Consensus        49 ~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~i  128 (628)
T 4a0p_A           49 NRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRAL  128 (628)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEE
T ss_pred             CEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccE
Confidence            3444455567778777765431    11122356788998766655544 456889999986554333333445567899


Q ss_pred             EEccCCCCEEEEE-eCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEEe
Q 004785          156 RFHPLNPTIIASG-SLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVL  232 (730)
Q Consensus       156 afSP~dg~lLaSg-S~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l~  232 (730)
                      +++|.++.++.+- +..+.|...++...........-...+.++++++++.|+.+..  +.|..+|+.....    ..+.
T Consensus       129 avdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~----~v~~  204 (628)
T 4a0p_A          129 ALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR----EVIA  204 (628)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEE
T ss_pred             EEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce----EEee
Confidence            9999556555553 2356788888875544444445567889999999998888874  4599999876433    1333


Q ss_pred             cCCCCeEEEEEccCCCeEEEEE
Q 004785          233 RTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       233 ~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      ........+++..  .++..+.
T Consensus       205 ~~l~~P~glav~~--~~ly~tD  224 (628)
T 4a0p_A          205 DDLPHPFGLTQYQ--DYIYWTD  224 (628)
T ss_dssp             ECCSCEEEEEEET--TEEEEEE
T ss_pred             ccCCCceEEEEEC--CEEEEec
Confidence            3444566788764  3455543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.16  E-value=0.36  Score=51.44  Aligned_cols=143  Identities=17%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-------cCCCCcEEEEEccC---CCCEEEEEeC-------C
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-------GHRRTPWVVRFHPL---NPTIIASGSL-------D  171 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-------gH~~~V~sVafSP~---dg~lLaSgS~-------D  171 (730)
                      ....|+|.|||+.|+.+...+.|++++. .++....+.       ...+....|+|+|+   ++.++++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3679999999984445567799999985 343221111       12334688999994   4555555333       2


Q ss_pred             CcEEEEECCCC--e---EEEE---ec----CCCCeEEEEEcCCCCEEEEEEC--------------CeEEEEEcCCCccc
Q 004785          172 HEVRLWNASTA--E---CIGS---RD----FYRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET  225 (730)
Q Consensus       172 gtVrLWDl~tg--~---~i~~---l~----h~~~V~sVafSPdG~~LAsgSd--------------d~I~VWDl~t~~~~  225 (730)
                      ..|..|++..+  +   ....   +.    .......++|.|||.+.++.++              ++|.-+|....-..
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~  177 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD  177 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence            35777776543  1   1111   11    1123467999999965554433              24555565432000


Q ss_pred             ---------cCCeEEecCCCCeEEEEEcc-CCCeEEEE
Q 004785          226 ---------SSPRIVLRTRRSLRAVHFHP-HAAPLLLT  253 (730)
Q Consensus       226 ---------~~~~~l~~h~~~V~sVaFSP-dG~~Llat  253 (730)
                               .........-.....++|+| +|+ |.++
T Consensus       178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~-l~~~  214 (353)
T 2g8s_A          178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNA-LWLN  214 (353)
T ss_dssp             TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTE-EEEE
T ss_pred             CCCCcCCCCCCccEEEEcCcCccceEEECCCCC-EEEE
Confidence                     00112222234578999999 565 4443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.07  E-value=3.3  Score=47.65  Aligned_cols=163  Identities=7%  Similarity=-0.050  Sum_probs=105.3

Q ss_pred             eCCCeEEEEeCCCCCC-----C-CCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC
Q 004785           88 VEAESLHHLRPKYCPL-----S-PPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (730)
Q Consensus        88 s~DgsIrlWd~~t~~L-----~-gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~  160 (730)
                      +..+.|+..++.....     . ..-..+.+++|++.+..|+.+ ...+.|+.++.........+......+..+++.+.
T Consensus       323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~  402 (619)
T 3s94_A          323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV  402 (619)
T ss_dssp             EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred             EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence            3456677777765421     1 223457899999855555544 45788999998765444444444456788999875


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCC
Q 004785          161 NPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRR  236 (730)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~  236 (730)
                      +++++.+-...+.|.+.++.......... .-.....++++|...+|+....   .+|...+++.....   ......-.
T Consensus       403 ~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~---~l~~~~l~  479 (619)
T 3s94_A          403 ARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV---VLVNTSLG  479 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---EEECSSCS
T ss_pred             cCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE---EEEeCCCC
Confidence            67777777778899999987554322232 3356789999998666666552   34766666543321   12223345


Q ss_pred             CeEEEEEccCCCeEEEE
Q 004785          237 SLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       237 ~V~sVaFSPdG~~Llat  253 (730)
                      ....|++++++..|..+
T Consensus       480 ~P~GlalD~~~~~LY~a  496 (619)
T 3s94_A          480 WPNGLALDYDEGKIYWG  496 (619)
T ss_dssp             CEEEEEEETTTTEEEEE
T ss_pred             CCeeeEEcccCCEEEEE
Confidence            77899999977767665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.94  E-value=0.75  Score=49.41  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=82.0

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE--EE----ecCCCCcEEEEEccC---CCCEEEEE--eCCCcEEE
Q 004785          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK--VL----HGHRRTPWVVRFHPL---NPTIIASG--SLDHEVRL  176 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~--~l----~gH~~~V~sVafSP~---dg~lLaSg--S~DgtVrL  176 (730)
                      .....|+|.|||+++++--..+.|++++..+++...  .+    ....+....|+|+|+   ++.++++-  ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            356799999999977776558999999876665422  12    122345788999993   35555542  24456666


Q ss_pred             EECCCC----------eEEE-Eec--CCCCeEEEEEcCCCCEEEEEEC--------------CeEEEEEcCCCccc----
Q 004785          177 WNASTA----------ECIG-SRD--FYRPIASIAFHASGELLAVASG--------------HKLYIWRYNMREET----  225 (730)
Q Consensus       177 WDl~tg----------~~i~-~l~--h~~~V~sVafSPdG~~LAsgSd--------------d~I~VWDl~t~~~~----  225 (730)
                      |.+..+          +.+. .+.  ..+....+.|.|||.+.++.++              ++|.-.+....-..    
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            766541          1111 122  2234567999999986666442              22433343322000    


Q ss_pred             -cCCeEEecCCCCeEEEEEccCCCeE
Q 004785          226 -SSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       226 -~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                       .......+| .....++|+|+|..+
T Consensus       192 ~~~~i~a~G~-RNp~Gla~dp~G~L~  216 (347)
T 3das_A          192 PGSPVYSYGH-RNVQGLAWDDKQRLF  216 (347)
T ss_dssp             TTCCEEEBCC-SBCCEEEECTTCCEE
T ss_pred             CCCeEEeeCC-CCcceEEECCCCCEE
Confidence             011223334 456789999998733

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.79  E-value=0.9  Score=47.49  Aligned_cols=143  Identities=15%  Similarity=0.114  Sum_probs=83.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC--CCC
Q 004785          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA--STA  182 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl--~tg  182 (730)
                      +.+.+..+.+.+++..++.+ .++.|.. ....|+.-..+ ..+...+..+.+.+ ++.+++.+...+..+-+|-  .+-
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCSSC
T ss_pred             CCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCCce
Confidence            44568888888777766655 4555433 22335443333 34556788999998 7777766654443444453  233


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEE-ecCCCCeEEEEEccCCCeEEE
Q 004785          183 ECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIV-LRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       183 ~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l-~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      +.+ .......+..+.+.+++++++++.++.+++++.+.++.-.....- ......+..+.|.+++..+++
T Consensus       197 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~  266 (327)
T 2xbg_A          197 EPH-NRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA  266 (327)
T ss_dssp             EEE-ECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE
T ss_pred             eEC-CCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE
Confidence            333 233456788999999998877776666777642222211100000 112345889999988775444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.65  E-value=1.2  Score=49.37  Aligned_cols=137  Identities=13%  Similarity=0.116  Sum_probs=88.8

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCC----CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSP----PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------  140 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~g----H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---------  140 (730)
                      ..++..++.+. ++.||.-++...    .+.-    .-..|..+..||+|++||..+ +..|.|-.+..+.         
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence            34555565543 467777665522    1211    123578899999999999885 4588888886321         


Q ss_pred             ---EEEEEec------CCCCcEEEEEccCC--CCEEEEEeCCCcEEEEECCCC--eEEEEe-------c---CCCCeEEE
Q 004785          141 ---CLKVLHG------HRRTPWVVRFHPLN--PTIIASGSLDHEVRLWNASTA--ECIGSR-------D---FYRPIASI  197 (730)
Q Consensus       141 ---~l~~l~g------H~~~V~sVafSP~d--g~lLaSgS~DgtVrLWDl~tg--~~i~~l-------~---h~~~V~sV  197 (730)
                         ..+.+.-      ....|..+.|||..  +..|++-..|++|++||+...  ++. .+       +   ....|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence               1233332      24679999999953  347888899999999999862  222 22       1   22578899


Q ss_pred             EEcCCCCEEEEEE--CCe-EEEE
Q 004785          198 AFHASGELLAVAS--GHK-LYIW  217 (730)
Q Consensus       198 afSPdG~~LAsgS--dd~-I~VW  217 (730)
                      +|..+|-.|+..+  .++ |+-.
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEEE
Confidence            9999887777655  333 6543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.40  E-value=0.19  Score=58.03  Aligned_cols=111  Identities=19%  Similarity=0.196  Sum_probs=77.1

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------eEEEEECCCCeE--EEEEec-CCCCcEEEEEccCCCCEEEEEeC-CCcEE
Q 004785          112 AAAFSP-DGKTLASTHGDH-----------TVKIIDCQTGSC--LKVLHG-HRRTPWVVRFHPLNPTIIASGSL-DHEVR  175 (730)
Q Consensus       112 ~lafSP-DG~~LaSgS~Dg-----------tVrVWDl~tg~~--l~~l~g-H~~~V~sVafSP~dg~lLaSgS~-DgtVr  175 (730)
                      .+++.+ +|++++.|+.+.           .+.+||..+++-  +..+.. +.....++++.. ++++++.|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence            566777 888888887643           689999988752  233322 333344577777 8899999884 56899


Q ss_pred             EEECCCCeEEEEe--cCCCCeEEEEEcCCCCEEEEEE-C------CeEEEEEcCCCc
Q 004785          176 LWNASTAECIGSR--DFYRPIASIAFHASGELLAVAS-G------HKLYIWRYNMRE  223 (730)
Q Consensus       176 LWDl~tg~~i~~l--~h~~~V~sVafSPdG~~LAsgS-d------d~I~VWDl~t~~  223 (730)
                      +||..+++....-  .....-.+++..++|++++.|+ .      ..+.+||..+.+
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            9999887655442  2333345667778999998887 2      239999998764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.01  E-value=0.083  Score=61.93  Aligned_cols=138  Identities=9%  Similarity=-0.038  Sum_probs=83.3

Q ss_pred             EEEeCCCeEEEEeCCC----C---CC-CCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           85 ASWVEAESLHHLRPKY----C---PL-SPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        85 ~Sgs~DgsIrlWd~~t----~---~L-~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ++-...+.|+.+++..    .   .+ .........|++.+.+..| ++-...+.|.++++........+.........|
T Consensus       422 ~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gi  501 (699)
T 1n7d_A          422 WSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAI  501 (699)
T ss_dssp             ECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCE
T ss_pred             EEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceE
Confidence            3334566788888764    1   11 1122335678888654444 444557889999987554433333333557789


Q ss_pred             EEccCCCCEEEEEeCC-CcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCC
Q 004785          156 RFHPLNPTIIASGSLD-HEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMR  222 (730)
Q Consensus       156 afSP~dg~lLaSgS~D-gtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~  222 (730)
                      +++|.++.++++-... +.|.++++......... ..-...+.|+|+|++..|+.+..  +.|.++|+...
T Consensus       502 avDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          502 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             ECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             EEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            9999556666554333 67888887543222222 12245678999999887777763  45999998653

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.83  E-value=1.3  Score=46.31  Aligned_cols=180  Identities=8%  Similarity=0.049  Sum_probs=99.8

Q ss_pred             CCCCEEEEEe--CCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CC-------------CcEEEEECC
Q 004785          117 PDGKTLASTH--GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LD-------------HEVRLWNAS  180 (730)
Q Consensus       117 PDG~~LaSgS--~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~D-------------gtVrLWDl~  180 (730)
                      .+|.+|+...  +++.|+..+..... ...+....    +--+++ +++.|+.+. .+             ..|+..++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~~----~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSNDT----AMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEEE----EEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCCc----eeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            4677776664  25667777764433 34443221    234577 555555443 33             468888888


Q ss_pred             CCeEEEEecCCCCeEEEEEcCCCCEEEEEE---CCe--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          181 TAECIGSRDFYRPIASIAFHASGELLAVAS---GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       181 tg~~i~~l~h~~~V~sVafSPdG~~LAsgS---dd~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .++........    ...|+++|++|+...   ++.  |+..++.....    ..+..+..    ..|+++|+.|..+..
T Consensus        97 g~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~----~~lt~~~~----~~~~~~g~~iy~t~~  164 (302)
T 3s25_A           97 GHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK----KKIKNHYL----FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             SCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC----EEEESSCC----CCSEEETTEEEEECT
T ss_pred             CCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe----EEEeCCCc----eEeeEECCEEEEEeC
Confidence            76644443322    236788999998876   333  77777664432    23444432    457888988876643


Q ss_pred             eCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceee
Q 004785          256 VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQS  335 (730)
Q Consensus       256 vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~  335 (730)
                            +.                +.|...++.......+...      +...| +.|++++|++....  .+..++.++
T Consensus       165 ------g~----------------~~Iy~~~l~g~~~~~l~~~------~~~~~-~~P~g~~iy~t~~~--~~~~I~~~~  213 (302)
T 3s25_A          165 ------KN----------------GQLYRYDTASQSEALFYDC------NCYKP-VVLDDTNVYYMDVN--RDNAIVHVN  213 (302)
T ss_dssp             ------TT----------------CCEEEEETTTTEEEEEECS------CEEEE-EEEETTEEEEEEGG--GTTEEEEEC
T ss_pred             ------CC----------------ceEEEEECCCCCEEEEeCC------Cccce-eeecCCEEEEEEcC--CCcEEEEEE
Confidence                  11                1222222222111111111      11223 56899999885433  236788899


Q ss_pred             cCCCcceeee
Q 004785          336 LRSSSSVRLL  345 (730)
Q Consensus       336 ~~ss~~~~l~  345 (730)
                      ++++..++|+
T Consensus       214 ldG~~~~~Lt  223 (302)
T 3s25_A          214 INNPNPVVLT  223 (302)
T ss_dssp             SSSCCCEECS
T ss_pred             CCCCCeEEEe
Confidence            9888877664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.75  E-value=0.76  Score=52.90  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=66.6

Q ss_pred             CCEEEEEeC-CCeEEEEeC-CCCCC------CCCC---------CCeEEEEECCCCCE----EEEEeCCCeEEEEECCCC
Q 004785           81 RRGLASWVE-AESLHHLRP-KYCPL------SPPP---------RSTIAAAFSPDGKT----LASTHGDHTVKIIDCQTG  139 (730)
Q Consensus        81 g~~L~Sgs~-DgsIrlWd~-~t~~L------~gH~---------~~Vt~lafSPDG~~----LaSgS~DgtVrVWDl~tg  139 (730)
                      +..|+.+.. ++.|.-+|. ++++.      ....         .....++++|.+..    |+.++.|+.|.-+|.++|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            345666666 777888888 66631      1110         00123455444444    888889999999999999


Q ss_pred             eEEEEEecCCC----CcE-EEEEccCCCCEEEEEe------CCCcEEEEECCCCeEEEEecC
Q 004785          140 SCLKVLHGHRR----TPW-VVRFHPLNPTIIASGS------LDHEVRLWNASTAECIGSRDF  190 (730)
Q Consensus       140 ~~l~~l~gH~~----~V~-sVafSP~dg~lLaSgS------~DgtVrLWDl~tg~~i~~l~h  190 (730)
                      +.+...+....    .+. ...+.  ++. ++.++      .++.|+-+|.++|+.+..+..
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            98877653220    121 11221  344 44444      489999999999999887653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.15  E-value=11  Score=43.59  Aligned_cols=166  Identities=10%  Similarity=0.006  Sum_probs=104.1

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCCCCCC----CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-----c
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYCPLSP----PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-----G  147 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~~L~g----H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-----g  147 (730)
                      ..+....|+.+..+| +..||..+.++..    ....|.++.. .+| .|..++.+ -|..+|..+++. ..+.     .
T Consensus        69 ~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l  143 (758)
T 3ott_A           69 VIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGL  143 (758)
T ss_dssp             EEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCC
T ss_pred             EEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCc
Confidence            345677899888765 7789987764432    2335777754 355 45556665 688889877654 3331     1


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-cC-----CCCeEEEEEcCCCCEEEEEECCeEEEEEcCC
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-DF-----YRPIASIAFHASGELLAVASGHKLYIWRYNM  221 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-~h-----~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t  221 (730)
                      ....|.++.... ++.+.+ +..+ -|..+|..+++..... ..     ...|.++..+.++..|.+|+++++..+|..+
T Consensus       144 ~~~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~  220 (758)
T 3ott_A          144 PNNTIYSIIRTK-DNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPST  220 (758)
T ss_dssp             SCSCEEEEEECT-TCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTT
T ss_pred             CCCeEEEEEEcC-CCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCC
Confidence            134577777776 666655 3444 5888998876643321 11     2248888888888766667766799999876


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      .+... ...+  ....|.++....+|...+.+
T Consensus       221 ~~~~~-~~~l--~~~~i~~i~~d~~g~lWigT  249 (758)
T 3ott_A          221 GQIKQ-TEAF--HNNSIKSLALDGNGDLLAGT  249 (758)
T ss_dssp             TEEEE-EEEE--EEEEEEEEEECTTCCEEEEE
T ss_pred             CeEEe-ccCC--CCCeEEEEEEcCCCCEEEEe
Confidence            54321 1111  23458888888888866655

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.12  E-value=0.53  Score=47.82  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=82.8

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE------EEEEe--cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC------LKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~------l~~l~--gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      .+.+++|+|||.+.++  .++.++-.+..+...      -..+-  +-.. ...+.|.| ++.+.++  .||.|+-++-.
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCCC
Confidence            6779999999986666  677777777644211      12221  1122 56899999 8888887  56999888864


Q ss_pred             CCeEEE------Eec--CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc---ccCCeEEe-cCCCCeEEEEEccCCC
Q 004785          181 TAECIG------SRD--FYRPIASIAFHASGELLAVASGHKLYIWRYNMREE---TSSPRIVL-RTRRSLRAVHFHPHAA  248 (730)
Q Consensus       181 tg~~i~------~l~--h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~---~~~~~~l~-~h~~~V~sVaFSPdG~  248 (730)
                      +.....      .+.  .-..+..|.|+|+|.+.++. ++.++-+...+...   ......+. ..-..-+.+.|.++|.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            421111      111  12467999999999998888 77765443332211   00011222 2222345567999998


Q ss_pred             eEEEE
Q 004785          249 PLLLT  253 (730)
Q Consensus       249 ~Llat  253 (730)
                      .+.+.
T Consensus       195 l~~v~  199 (236)
T 1tl2_A          195 LFGVQ  199 (236)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.97  E-value=4.4  Score=44.90  Aligned_cols=130  Identities=13%  Similarity=0.152  Sum_probs=81.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe----------
Q 004785          118 DGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE----------  183 (730)
Q Consensus       118 DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~----------  183 (730)
                      +|..|+.+ .++.||.-++..+...+.++..    -..|..+..+| ++++++..+ +.+|.|-.+..+.          
T Consensus        31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred             CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence            55555555 3467777777644444444432    23588899999 999888865 4579998887332          


Q ss_pred             --EEEEec-------CCCCeEEEEEcCCC---CEEEEEE-CCeEEEEEcCCCccccCCeEEe---------cCCCCeEEE
Q 004785          184 --CIGSRD-------FYRPIASIAFHASG---ELLAVAS-GHKLYIWRYNMREETSSPRIVL---------RTRRSLRAV  241 (730)
Q Consensus       184 --~i~~l~-------h~~~V~sVafSPdG---~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~---------~h~~~V~sV  241 (730)
                        ..+.+.       ...+|..+.|||-|   ..|++-. |+.|++||+.....  .+..+.         .....|.++
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~--~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE--KPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS--CCEEESCCCSEEESCSSCCCEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC--CCcchhccccccCCCcccceEEEE
Confidence              111221       24679999999965   4666666 55699999987432  122111         112567888


Q ss_pred             EEccCCCeEEE
Q 004785          242 HFHPHAAPLLL  252 (730)
Q Consensus       242 aFSPdG~~Lla  252 (730)
                      +|..++-.|.+
T Consensus       186 ~Fg~~~lTLYv  196 (452)
T 3pbp_A          186 EFSKDGLTLYC  196 (452)
T ss_dssp             EECTTSSCEEE
T ss_pred             EEcCCCcEEEE
Confidence            88887655544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.59  E-value=0.6  Score=47.43  Aligned_cols=130  Identities=14%  Similarity=0.103  Sum_probs=77.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCe------EEEEEec-CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEE------
Q 004785          119 GKTLASTHGDHTVKIIDCQTGS------CLKVLHG-HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI------  185 (730)
Q Consensus       119 G~~LaSgS~DgtVrVWDl~tg~------~l~~l~g-H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i------  185 (730)
                      ..+|+...+| +|+.=...++.      ....+-. --..+..++|+| ++.+.+.  .++.++-.+..+....      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            3456666666 66655444433      1223321 134678999999 8887777  6777777776552211      


Q ss_pred             EEecC--CCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc---CCeEEecCC-CCeEEEEEccCCCeEEEE
Q 004785          186 GSRDF--YRPIASIAFHASGELLAVASGHKLYIWRYNMREETS---SPRIVLRTR-RSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       186 ~~l~h--~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~---~~~~l~~h~-~~V~sVaFSPdG~~Llat  253 (730)
                      ..++.  -....++.|+|+|.+.++ +++.|+-++-.+.....   .-.++..+. ..+..|.|.|+|...+++
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             cEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            11211  112578999999998888 88888877754332211   011222211 367899999999966555

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.48  E-value=2.1  Score=45.30  Aligned_cols=107  Identities=13%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ec----CCCCeEEEEEcCC---CCEEEEEEC---
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD----FYRPIASIAFHAS---GELLAVASG---  211 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~----h~~~V~sVafSPd---G~~LAsgSd---  211 (730)
                      .+...-...+.++|.| +++++++ ..++.|++++  +++....  +.    .......++|+|+   +..|+++..   
T Consensus        25 ~va~~l~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~  100 (352)
T 2ism_A           25 EVVGGLEVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAE  100 (352)
T ss_dssp             EEECCCSCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred             EEECCCCCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence            3333344578999999 7776555 5679999998  4543221  11    2356889999998   666655542   


Q ss_pred             ----CeEEEEEcCCCccccCCeE---Ee---cCCCCeEEEEEccCCCeEEEEE
Q 004785          212 ----HKLYIWRYNMREETSSPRI---VL---RTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       212 ----d~I~VWDl~t~~~~~~~~~---l~---~h~~~V~sVaFSPdG~~Llatg  254 (730)
                          +.|..|+............   +.   ........++|.|||..+++.+
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence                4588888764321110011   11   1112346899999997555544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=90.65  E-value=2.6  Score=45.25  Aligned_cols=113  Identities=14%  Similarity=0.190  Sum_probs=68.8

Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--e-----cCCCCeEEEEEcCC---CCEEEEE-E
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--R-----DFYRPIASIAFHAS---GELLAVA-S  210 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l-----~h~~~V~sVafSPd---G~~LAsg-S  210 (730)
                      +..+...-...+.|+|.| ++.++++--..|.|++++..+++....  +     ........|+|+|+   +.+|++. +
T Consensus        24 ~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            444544456688999999 888777765589999998766654322  2     12456789999996   4445443 2


Q ss_pred             ---CCeEEEEEcCCCc----cccCCeEEe-----cCCCCeEEEEEccCCCeEEEEEe
Q 004785          211 ---GHKLYIWRYNMRE----ETSSPRIVL-----RTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       211 ---dd~I~VWDl~t~~----~~~~~~~l~-----~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                         +++|.-|.+....    .......+.     .....-..|.|.|||..+++.+.
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence               3446667665421    111111111     11123457999999986666654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=90.18  E-value=12  Score=40.10  Aligned_cols=142  Identities=10%  Similarity=0.143  Sum_probs=79.6

Q ss_pred             eEEEEECCCCCEEEEE------------eCCCeEEEEECCC--CeEE-EEEec-----CCCCcEEEEEccC-CCC--EEE
Q 004785          110 TIAAAFSPDGKTLAST------------HGDHTVKIIDCQT--GSCL-KVLHG-----HRRTPWVVRFHPL-NPT--IIA  166 (730)
Q Consensus       110 Vt~lafSPDG~~LaSg------------S~DgtVrVWDl~t--g~~l-~~l~g-----H~~~V~sVafSP~-dg~--lLa  166 (730)
                      .-++...++|..++++            ..+|.|.++|..+  ++.. ..+.+     .......+.+.++ ++.  +++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3455566665444443            1688999999873  3321 12232     2345677887662 232  444


Q ss_pred             EEeC--CCcEEEEECCCC--eEE--EEecC--CCCeEEEEEcCCCCEEEEEE----C------------CeEEEEEcCCC
Q 004785          167 SGSL--DHEVRLWNASTA--ECI--GSRDF--YRPIASIAFHASGELLAVAS----G------------HKLYIWRYNMR  222 (730)
Q Consensus       167 SgS~--DgtVrLWDl~tg--~~i--~~l~h--~~~V~sVafSPdG~~LAsgS----d------------d~I~VWDl~t~  222 (730)
                      .-..  +.+|.+|++..+  ...  ..+.+  -...+.+.+.++|.+.++..    +            ..=+||.+..+
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4333  567778776543  222  22332  24678999999999777654    1            11234433333


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +    ...+...-...+.++|+||++++..+..
T Consensus       212 ~----~~~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          212 D----VRVVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             C----CEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             e----EEEeecCCcccCcceECCCCCEEEEEeC
Confidence            2    2233344456789999999998777653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.15  E-value=3  Score=44.29  Aligned_cols=110  Identities=10%  Similarity=0.125  Sum_probs=63.8

Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe-EEEEec----CCCCeEEEEEcCC---CCEEEEEE-C--
Q 004785          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE-CIGSRD----FYRPIASIAFHAS---GELLAVAS-G--  211 (730)
Q Consensus       143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~i~~l~----h~~~V~sVafSPd---G~~LAsgS-d--  211 (730)
                      ..+...-...+.|+|.| +++++++ ..++.|+++| .+++ .+..+.    .......++|+|+   +..|+++. .  
T Consensus        22 ~~va~~l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~   98 (354)
T 3a9g_A           22 SEVASDLEVPWSIAPLG-GGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA   98 (354)
T ss_dssp             EEEECSCSCEEEEEEEE-TTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             EEEeCCCCCCeEEEEcC-CCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence            33333345678999999 7775554 6669999997 4555 222211    2356889999998   55555443 2  


Q ss_pred             ------CeEEEEEcCCCc-cccCCeE----Eec-CCCCeEEEEEccCCCeEEEEEe
Q 004785          212 ------HKLYIWRYNMRE-ETSSPRI----VLR-TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       212 ------d~I~VWDl~t~~-~~~~~~~----l~~-h~~~V~sVaFSPdG~~Llatgs  255 (730)
                            +.|..|+..... .......    +.. .......+.|.|||..+++.+.
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~  154 (354)
T 3a9g_A           99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD  154 (354)
T ss_dssp             GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred             CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence                  447778776541 0000111    111 1123467999999985555443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.50  E-value=4.2  Score=44.94  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ec-------CCCCeEEEEEcCC---CCEEEEEE
Q 004785          143 KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RD-------FYRPIASIAFHAS---GELLAVAS  210 (730)
Q Consensus       143 ~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~-------h~~~V~sVafSPd---G~~LAsgS  210 (730)
                      ..+...-...+.|+|.| +++++++-...+.|++++..+++....  +.       .......|+|+|+   +..|++..
T Consensus        20 ~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           20 KVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             EEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            33433344678999999 888777654445799998766654322  21       2356779999996   55555543


Q ss_pred             C--------------CeEEEEEcCCCc-cccCCeEEe---c--CCCCeEEEEEccCCCeEEEEEe
Q 004785          211 G--------------HKLYIWRYNMRE-ETSSPRIVL---R--TRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       211 d--------------d~I~VWDl~t~~-~~~~~~~l~---~--h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      .              ..|.-|++.... .+.....+.   .  .......|.|.|||..+++.+.
T Consensus        99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            1              236666654321 111011111   1  1234689999999986666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.89  E-value=13  Score=37.55  Aligned_cols=139  Identities=15%  Similarity=0.095  Sum_probs=74.9

Q ss_pred             CCCEEEEEeCC----CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEECCCCeEEE
Q 004785           80 ARRGLASWVEA----ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD------HTVKIIDCQTGSCLK  143 (730)
Q Consensus        80 ~g~~L~Sgs~D----gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D------gtVrVWDl~tg~~l~  143 (730)
                      ++..++.|+.+    ..+.+||..+.+      +.........+.+  ++++++.|+.+      ..+.+||..+.+-..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            34444445433    568888887652      2111112223333  67777777764      468999998875322


Q ss_pred             E--EecCCCCcEEEEEccCCCCEEEEEeC---------CCcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEE
Q 004785          144 V--LHGHRRTPWVVRFHPLNPTIIASGSL---------DHEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       144 ~--l~gH~~~V~sVafSP~dg~lLaSgS~---------DgtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgS  210 (730)
                      .  +.........+.+   ++.+++.|+.         -..+.+||+.+.+-...-.  ....-.+++.. ++++++.|+
T Consensus       133 ~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred             CCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeC
Confidence            1  1111111122222   5677777653         3458899999886544422  22212222222 666666665


Q ss_pred             C------CeEEEEEcCCCcc
Q 004785          211 G------HKLYIWRYNMREE  224 (730)
Q Consensus       211 d------d~I~VWDl~t~~~  224 (730)
                      .      +.+.+||+.+.+-
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEE
T ss_pred             CCCCCCCceEEEeeCCCCcE
Confidence            1      2389999887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=88.28  E-value=9.9  Score=42.33  Aligned_cols=120  Identities=14%  Similarity=0.153  Sum_probs=85.0

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEE
Q 004785          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (730)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LA  207 (730)
                      +..|.|.|+.++..+..-.-   .-.+.-.+| ..++++--. ..++.|+|+.+.+.++.+.....|.--.|-. .+.|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis-~~~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEE-TTEEE
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecC-CCeEE
Confidence            34788889988654422111   123466788 667766654 6789999999999999988878888888864 46788


Q ss_pred             EEECCeEEEEEcCCCccccCCeEEecC----CCCeEEEEEccCCCeEEEEEe
Q 004785          208 VASGHKLYIWRYNMREETSSPRIVLRT----RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       208 sgSdd~I~VWDl~t~~~~~~~~~l~~h----~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..++..|+-|++.....  ....+..|    ...|..-..+++.++++..|=
T Consensus       121 lVT~taVyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI  170 (494)
T 1bpo_A          121 LVTDNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  170 (494)
T ss_dssp             EECSSEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEE
T ss_pred             EEcCCeeEEecccCCCC--chhheecchhcccceEEEEEECCCCCeEEEEee
Confidence            88888899999976332  11233333    457888889999999887663

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=88.11  E-value=43  Score=38.62  Aligned_cols=166  Identities=13%  Similarity=0.023  Sum_probs=100.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCC--------CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLSP--------PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----  148 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~g--------H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----  148 (730)
                      ...|+.+..+ -|..++..+.++..        ....|.++....+|.+.+ ++.+ -|..+|..+++.. .+...    
T Consensus       112 ~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~  187 (758)
T 3ott_A          112 GDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSS  187 (758)
T ss_dssp             TTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCTT
T ss_pred             CCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCccc
Confidence            4578877766 57788876554321        234688998888887665 4444 4778888776533 22211    


Q ss_pred             --CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccc
Q 004785          149 --RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGHKLYIWRYNMREET  225 (730)
Q Consensus       149 --~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~  225 (730)
                        ...|.++.... ++..|..|.. +-+..+|..+++...... ....|.++..+.+|.+.+ |+++++.+++..+....
T Consensus       188 ~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~Gl~~~~~~~~~~~  264 (758)
T 3ott_A          188 QSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNGLYVYHNDTTPLQ  264 (758)
T ss_dssp             CSSCCEEEEEEET-TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTEEEEECCTTSCCE
T ss_pred             cccceeEEEEEEC-CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCceeEEecCCCcEE
Confidence              12377787766 4553333443 458889988775433211 233578888888887554 44678999987665321


Q ss_pred             cCCeE----EecCCCCeEEEEEccCCCeEEEE
Q 004785          226 SSPRI----VLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       226 ~~~~~----l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      .-...    ..-....|.++....+|...+.+
T Consensus       265 ~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT  296 (758)
T 3ott_A          265 HIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT  296 (758)
T ss_dssp             EECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred             EEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence            10000    00123468999988888866655

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=87.75  E-value=20  Score=35.79  Aligned_cols=128  Identities=13%  Similarity=0.043  Sum_probs=70.1

Q ss_pred             CeEEEEeCCCCC---CC------CCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEE--EEEecCCCCcEE
Q 004785           91 ESLHHLRPKYCP---LS------PPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCL--KVLHGHRRTPWV  154 (730)
Q Consensus        91 gsIrlWd~~t~~---L~------gH~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l--~~l~gH~~~V~s  154 (730)
                      ..+.+||..+.+   ..      .......++.+  ++++++.|+.+     ..+.+||..+.+-.  ..+.........
T Consensus        78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  155 (301)
T 2vpj_A           78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGL  155 (301)
T ss_dssp             CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceE
Confidence            358888877654   11      11111222333  57777777653     46889998876522  222211111222


Q ss_pred             EEEccCCCCEEEEEeCC-----CcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCC
Q 004785          155 VRFHPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG------HKLYIWRYNM  221 (730)
Q Consensus       155 VafSP~dg~lLaSgS~D-----gtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgSd------d~I~VWDl~t  221 (730)
                      +.+   ++++++.|+.+     ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+.      +.+.+||+.+
T Consensus       156 ~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          156 VVA---SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EEE---TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EEE---CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCC
Confidence            222   56778877654     468999998876554422  2211112222 25666677662      2389999987


Q ss_pred             Ccc
Q 004785          222 REE  224 (730)
Q Consensus       222 ~~~  224 (730)
                      .+-
T Consensus       232 ~~W  234 (301)
T 2vpj_A          232 DSW  234 (301)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.00  E-value=23  Score=35.64  Aligned_cols=129  Identities=11%  Similarity=0.033  Sum_probs=71.4

Q ss_pred             CCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCeEEEE--EecCCCCcEEEEE
Q 004785           90 AESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (730)
Q Consensus        90 DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D----gtVrVWDl~tg~~l~~--l~gH~~~V~sVaf  157 (730)
                      ...+..||..+.+      +.........+.+  ++++++.|+.+    ..+.+||..+++-...  +.........+.+
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  100 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA  100 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence            4567888877652      1111112223333  56777777754    6789999988753222  2111111222223


Q ss_pred             ccCCCCEEEEEeCC------CcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEE----------CCeEEEEEc
Q 004785          158 HPLNPTIIASGSLD------HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS----------GHKLYIWRY  219 (730)
Q Consensus       158 SP~dg~lLaSgS~D------gtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgS----------dd~I~VWDl  219 (730)
                         ++.+++.|+.+      ..+.+||..+.+-...-.  ....-.+++. -++++++.|+          .+.+.+||.
T Consensus       101 ---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~  176 (306)
T 3ii7_A          101 ---EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDP  176 (306)
T ss_dssp             ---TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred             ---CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCC
Confidence               66788887765      468999999876544422  2221122222 2666666665          123889998


Q ss_pred             CCCcc
Q 004785          220 NMREE  224 (730)
Q Consensus       220 ~t~~~  224 (730)
                      .+.+-
T Consensus       177 ~~~~W  181 (306)
T 3ii7_A          177 ATETW  181 (306)
T ss_dssp             TTTEE
T ss_pred             CCCeE
Confidence            87753

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=85.40  E-value=25  Score=38.97  Aligned_cols=103  Identities=21%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             CeEEEEECCCCC-EEEEEeCCCeEEEEECCCC---eEEEEEe-----c----CCCCcEEEEEccC---CCCEEEEEeC--
Q 004785          109 STIAAAFSPDGK-TLASTHGDHTVKIIDCQTG---SCLKVLH-----G----HRRTPWVVRFHPL---NPTIIASGSL--  170 (730)
Q Consensus       109 ~Vt~lafSPDG~-~LaSgS~DgtVrVWDl~tg---~~l~~l~-----g----H~~~V~sVafSP~---dg~lLaSgS~--  170 (730)
                      .-..|+|.|||. .|+++...|.|++++....   ..+..+.     +    ..+....|+|+|+   ++.++++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            357899999996 5556678899999975322   1222221     1    1345788999993   2455554332  


Q ss_pred             C----------CcEEEEECCC----------CeEEEEec---CCCCeEEEEEcCCCCEEEEEEC
Q 004785          171 D----------HEVRLWNAST----------AECIGSRD---FYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       171 D----------gtVrLWDl~t----------g~~i~~l~---h~~~V~sVafSPdG~~LAsgSd  211 (730)
                      +          ..|.-|.+..          .+.+..+.   .......|+|.|||++.++.++
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          1344465542          12222222   2345688999999986665553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=84.26  E-value=20  Score=35.80  Aligned_cols=126  Identities=18%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEEEE--EecCCCCcEEEEE
Q 004785           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (730)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~--l~gH~~~V~sVaf  157 (730)
                      ..+.+||..+.+      +......-.++.+  ++++++.|+.+     ..+.+||+.+.+-...  +.........+.+
T Consensus       128 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  205 (301)
T 2vpj_A          128 TSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL  205 (301)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             ceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE
Confidence            358888887652      1111111222333  67777777654     4689999887753222  1111111222323


Q ss_pred             ccCCCCEEEEEeCC-----CcEEEEECCCCeEEEEec--CCC-CeEEEEEcCCCCEEEEEE-C-----CeEEEEEcCCCc
Q 004785          158 HPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYR-PIASIAFHASGELLAVAS-G-----HKLYIWRYNMRE  223 (730)
Q Consensus       158 SP~dg~lLaSgS~D-----gtVrLWDl~tg~~i~~l~--h~~-~V~sVafSPdG~~LAsgS-d-----d~I~VWDl~t~~  223 (730)
                         ++.+++.|+.+     ..+.+||+.+.+-...-.  ... ....+.+  ++++++.|+ +     +.|.+||..+.+
T Consensus       206 ---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          206 ---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             ---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             ---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence               56788887764     469999999876554422  221 1222222  666666665 2     227888887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=83.25  E-value=20  Score=35.88  Aligned_cols=126  Identities=18%  Similarity=0.173  Sum_probs=67.6

Q ss_pred             eEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-------CeEEEEECCCCeEEEE--EecCCCCcEEEE
Q 004785           92 SLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-------HTVKIIDCQTGSCLKV--LHGHRRTPWVVR  156 (730)
Q Consensus        92 sIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D-------gtVrVWDl~tg~~l~~--l~gH~~~V~sVa  156 (730)
                      .+.+||..+.+      +........++.+  ++++++.|+.+       ..+.+||+.+.+=...  +.........+.
T Consensus       125 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  202 (302)
T 2xn4_A          125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV  202 (302)
T ss_dssp             EEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             eEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE
Confidence            57888887652      1111111222333  56777776542       3588999987652221  111111122222


Q ss_pred             EccCCCCEEEEEeCC-----CcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEE-C-----CeEEEEEcCCCc
Q 004785          157 FHPLNPTIIASGSLD-----HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVAS-G-----HKLYIWRYNMRE  223 (730)
Q Consensus       157 fSP~dg~lLaSgS~D-----gtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgS-d-----d~I~VWDl~t~~  223 (730)
                      +   ++.+++.|+.+     ..+.+||+.+.+-...-.  ....-.+++. -++++++.|+ +     +.+.+||..+.+
T Consensus       203 ~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          203 L---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             E---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             E---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE-ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            2   56788887764     469999999876554422  1111112222 2566666665 2     128888887664

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=82.89  E-value=28  Score=36.55  Aligned_cols=132  Identities=12%  Similarity=0.059  Sum_probs=70.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC--C-C-------CCCCCCeEEEEECCC---CCEEEEE-eC-------CCeEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC--P-L-------SPPPRSTIAAAFSPD---GKTLAST-HG-------DHTVKI  133 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~--~-L-------~gH~~~Vt~lafSPD---G~~LaSg-S~-------DgtVrV  133 (730)
                      ++...++..|+.....+.|++++....  + +       ....+....|+|+||   +.+|+.+ +.       ...|..
T Consensus        23 i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r  102 (353)
T 2g8s_A           23 LAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGY  102 (353)
T ss_dssp             EEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEE
Confidence            333334442555556788888875422  1 1       112346789999996   4555444 22       235666


Q ss_pred             EECCCC--e--EEE-EEec------CCCCcEEEEEccCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 004785          134 IDCQTG--S--CLK-VLHG------HRRTPWVVRFHPLNPTIIASGSL-------------DHEVRLWNASTA-------  182 (730)
Q Consensus       134 WDl~tg--~--~l~-~l~g------H~~~V~sVafSP~dg~lLaSgS~-------------DgtVrLWDl~tg-------  182 (730)
                      |+...+  +  ..+ .+..      .......|+|.| ++.++++.+.             .+.|.-+|....       
T Consensus       103 ~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf  181 (353)
T 2g8s_A          103 GRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPF  181 (353)
T ss_dssp             EEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTT
T ss_pred             EEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCC
Confidence            766543  1  112 1221      112245799999 7777776543             245777776532       


Q ss_pred             -------eEEEEecCCCCeEEEEEcC-CCCEEEE
Q 004785          183 -------ECIGSRDFYRPIASIAFHA-SGELLAV  208 (730)
Q Consensus       183 -------~~i~~l~h~~~V~sVafSP-dG~~LAs  208 (730)
                             ..+...++ .....++|+| +|++.++
T Consensus       182 ~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          182 IKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             cCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence                   11222233 3467899999 5554443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=81.56  E-value=37  Score=33.92  Aligned_cols=128  Identities=18%  Similarity=0.159  Sum_probs=68.8

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEEEE--EecCCCCcEEEEE
Q 004785           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLKV--LHGHRRTPWVVRF  157 (730)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~~--l~gH~~~V~sVaf  157 (730)
                      ..+.+||..+.+      +.........+.+  ++++++.|+.+     ..+.+||..+.+-...  +.........+.+
T Consensus        77 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~  154 (302)
T 2xn4_A           77 RTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV  154 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             cceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE
Confidence            357888887652      1111112223333  57777778765     3588899887652221  1111111222222


Q ss_pred             ccCCCCEEEEEeCC-------CcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCCC
Q 004785          158 HPLNPTIIASGSLD-------HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG------HKLYIWRYNMR  222 (730)
Q Consensus       158 SP~dg~lLaSgS~D-------gtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~~LAsgSd------d~I~VWDl~t~  222 (730)
                         ++++++.|+.+       ..+.+||+.+.+-...-  .....-.+++. -++++++.|+.      +.+.+||..+.
T Consensus       155 ---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          155 ---GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             ---TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             ---CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence               56777776542       45899999887655442  22221122222 25677777652      23899998776


Q ss_pred             cc
Q 004785          223 EE  224 (730)
Q Consensus       223 ~~  224 (730)
                      +-
T Consensus       231 ~W  232 (302)
T 2xn4_A          231 AW  232 (302)
T ss_dssp             EE
T ss_pred             CE
Confidence            43

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=80.38  E-value=37  Score=34.32  Aligned_cols=129  Identities=9%  Similarity=-0.010  Sum_probs=69.6

Q ss_pred             CeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeC-----C------CeEEEEECCCCeEEEEEec---CCCC
Q 004785           91 ESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHG-----D------HTVKIIDCQTGSCLKVLHG---HRRT  151 (730)
Q Consensus        91 gsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~-----D------gtVrVWDl~tg~~l~~l~g---H~~~  151 (730)
                      ..+..||..+.+     +..............++++++.|+.     .      ..+.+||..+++- ..+..   ....
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-LGMPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-EECCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE-EECCCCCcchhc
Confidence            567777877653     2222222333333457888888873     1      2378889887652 22211   1111


Q ss_pred             cEEEEEccCCCCEEEEEeCC--------CcEEEEECCCCeEEEEec--CCCCeEEEEEcCCCCEEEEEEC-------CeE
Q 004785          152 PWVVRFHPLNPTIIASGSLD--------HEVRLWNASTAECIGSRD--FYRPIASIAFHASGELLAVASG-------HKL  214 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~D--------gtVrLWDl~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgSd-------d~I  214 (730)
                      ...+.+   ++.+++.|+.+        ..+.+||..+++-...-.  ....-.+++. -++++++.|+.       +.+
T Consensus        92 ~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~  167 (315)
T 4asc_A           92 FGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKM  167 (315)
T ss_dssp             CEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCE
T ss_pred             eeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceE
Confidence            122222   56777777642        458999999876544322  2221122222 35666666653       238


Q ss_pred             EEEEcCCCcc
Q 004785          215 YIWRYNMREE  224 (730)
Q Consensus       215 ~VWDl~t~~~  224 (730)
                      .+||..+.+-
T Consensus       168 ~~yd~~~~~W  177 (315)
T 4asc_A          168 CVYDPKKFEW  177 (315)
T ss_dssp             EEEETTTTEE
T ss_pred             EEEeCCCCeE
Confidence            9999887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=80.35  E-value=33  Score=34.66  Aligned_cols=128  Identities=14%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             CeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEEE--EEecCCCCcEEEEE
Q 004785           91 ESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLASTHGD-----HTVKIIDCQTGSCLK--VLHGHRRTPWVVRF  157 (730)
Q Consensus        91 gsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~LaSgS~D-----gtVrVWDl~tg~~l~--~l~gH~~~V~sVaf  157 (730)
                      ..+.+||..+.+      +.........+.+  ++++++.|+.+     ..+.+||..+.+-..  .+.........+.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            357888887652      1111112223333  67777777643     468899988765221  11111111222333


Q ss_pred             ccCCCCEEEEEeCC-----CcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCCEEEEEEC------CeEEEEEcCCCcc
Q 004785          158 HPLNPTIIASGSLD-----HEVRLWNASTAECIGSR--DFYRPIASIAFHASGELLAVASG------HKLYIWRYNMREE  224 (730)
Q Consensus       158 SP~dg~lLaSgS~D-----gtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~~LAsgSd------d~I~VWDl~t~~~  224 (730)
                         ++.+++.|+.+     ..+.+||+.+.+-...-  .....-.+++.. ++++++.|+.      +.+.+||+.+.+-
T Consensus       168 ---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  243 (308)
T 1zgk_A          168 ---NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW  243 (308)
T ss_dssp             ---TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             ---CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence               56777777654     45899999887654432  222211222222 6677777652      2399999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	730
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	9e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	4e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-11
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
                             + +FS  G+ L + + D    + D        VL GH     
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWN 178
            +     +   +A+GS D  +++WN
Sbjct: 317 CLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV--VRFHPLNPTIIASGS 169
           A  F P+G   A+   D T ++ D +    L           +  V F   +  ++ +G 
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGY 289

Query: 170 LDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIW 217
            D    +W+A  A+  G        ++ +     G  +A  S    L IW
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (164), Expect = 9e-13
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 11/141 (7%)

Query: 119 GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL-- 176
            +   S   D + K+ D + G C +   GH      + F P N    A+GS D   RL  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFD 254

Query: 177 -WNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT 234
                        +    I S++F  SG LL          +W        +    VL  
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA----LKADRAGVLAG 310

Query: 235 -RRSLRAVHFHPHAAPLLLTA 254
               +  +         + T 
Sbjct: 311 HDNRVSCLGVTDD-GMAVATG 330

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAF 199
             + L GH    + + +   +  ++ S S D ++ +W++ T   + +       + + A+
Sbjct: 47  TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 200 HASGELLAVASGHKLYIWRY 219
             SG  +A      +     
Sbjct: 106 APSGNYVACGGLDNICSIYN 125

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 9/53 (16%), Positives = 17/53 (32%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
           A  +  D + L S   D  + I D  T + +  +           + P    +
Sbjct: 60  AMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (186), Expect = 1e-15
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 3/128 (2%)

Query: 92  SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT 151
            +                +        G  L S   D T+K+ D  TG CL  L GH   
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS 210
              V FH      I S + D  +R+W+     C+ +       + S+ FH +   +   S
Sbjct: 250 VRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308

Query: 211 G-HKLYIW 217
               + +W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 7e-12
 Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 27/176 (15%)

Query: 101 CPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
              +           + DG  +AS   D TV++    T  C   L  HR     + + P 
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 161 NP-------------------TIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFH 200
           +                      + SGS D  +++W+ ST  C+ +       +  + FH
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 201 ASGELLAVASG-HKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPLLLTA 254
           + G+ +   +    L +W Y    +       L      + ++ FH   AP ++T 
Sbjct: 257 SGGKFILSCADDKTLRVWDY----KNKRCMKTLNAHEHFVTSLDFHKT-APYVVTG 307

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 8e-09
 Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 11/158 (6%)

Query: 105 PPPRSTI--------AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVR 156
           PP +  +           F P    + S   D T+K+ D +TG   + L GH  +   + 
Sbjct: 7   PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 66

Query: 157 FHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYI 216
           F      + +  +                        ++S++   +G+ +  AS  K   
Sbjct: 67  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK--- 123

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
                  +T          R    +        L+ + 
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
                    +     +  + +  P+G  + S   D T+K+ + QTG C+K   GHR    
Sbjct: 88  FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 147

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASGH 212
           +VR +  + T+IAS S D  VR+W  +T EC    R+    +  I++       +++   
Sbjct: 148 MVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 2e-12
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 93  LHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP 152
           +  +    C  +     ++ +        L S + D TVKI D +TG CL+ L G  +  
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 260

Query: 153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECI------GSRDFYRPIASIAFHASGELL 206
             V     N   + + S D  V+LW+  T E I       S      +  I    +  + 
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320

Query: 207 AVASGH-----KLYIWRYN 220
           AV S +     KL +  ++
Sbjct: 321 AVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 5/163 (3%)

Query: 85  ASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV 144
            S      +  +    C                DG+ + S   D  VK+ D +T +CL  
Sbjct: 113 GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 172

Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGE 204
           L GH    + ++F   +   + SGSLD  +R+W+  T  CI +   ++ + S        
Sbjct: 173 LQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELKDN 228

Query: 205 LLAVA-SGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
           +L    +   + IW     +   + +   + + ++  + F+ +
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 9e-09
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
              +       G  + S   D+T+K+    TG CL+ L GH    W  +   
Sbjct: 16  DDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 135 DCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRP 193
                   KVL GH                I SGS D+ +++W+A T +C+ +       
Sbjct: 2   RRGELKSPKVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 194 IASIAFH 200
           + S    
Sbjct: 60  VWSSQMR 66

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 92  SLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----H 146
            +   +       P    +       +   + ++  D TVK+ D +TG  ++ L      
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG 302

Query: 147 GHRRTPWVVRFHPLNPTIIASGSLDH----EVRLWN 178
           G     W +R       + A GS +     ++ + +
Sbjct: 303 GSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLD 337

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.4 bits (161), Expect = 4e-12
 Identities = 35/280 (12%), Positives = 63/280 (22%), Gaps = 28/280 (10%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSC-----LKVLHGHRRTPWVVRFHPLNPTIIASG 168
             S  G+ L     D  V +ID           +K+    R           +   IA  
Sbjct: 68  RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127

Query: 169 SLDHEVRLWNASTAECIGSRDFYRPI------------ASIAFHASGELLAVASGHKLYI 216
               +  + +  T E    +                  A+I          V       I
Sbjct: 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 187

Query: 217 WRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR 276
              +  +  +     +   R L             +TA                      
Sbjct: 188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHR-YFITAANARNKLVVIDTKEGKLVAIED 246

Query: 277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSL 336
                       +  HP      P+     +    V         H ++   A +   S 
Sbjct: 247 TGGQTPHPGRGANFVHPTFG---PVWATSHMGDDSVALIGTDPEGHPDN---AWKILDSF 300

Query: 337 RSSSSVRLLTYSTPSGQYELVLSPI----ASNRSSPMPDG 372
            +     L   + P+ QY  V + +      + S  + D 
Sbjct: 301 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 340

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 15/132 (11%)

Query: 102 PLSPPPRSTIAAAFSPDGKTL--ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
                P   +      D + L   +      + +ID  T     VL        + R   
Sbjct: 16  APEDRPTQQM---NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSA 71

Query: 160 LNPTIIASGSLDHEVRLWNASTAECIGSRDF------YRPIASIAFHASGELLAVAS--G 211
            +   +     D +V + +    E     +            S       +     +   
Sbjct: 72  -SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP 130

Query: 212 HKLYIWRYNMRE 223
            +  I      E
Sbjct: 131 PQYVIMDGETLE 142

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.0 bits (159), Expect = 4e-12
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGS--CLKVLHGHRRTPWVVRFHPLNPTIIASGS 169
             A++ D   +A    +H V I +        +  L  H      V + P +   I +  
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCG 70

Query: 170 LDHEVRLWN 178
            D    +W 
Sbjct: 71  TDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY---RPIASIAFHASGELLAVASG 211
             ++  + T IA    +HEV ++  S  + +   +       +  + +      +     
Sbjct: 13  HAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 212 -HKLYIWRYNM 221
               Y+W    
Sbjct: 72  DRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 9/77 (11%)

Query: 116 SPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG------HRRTPWVVRFHP---LNPTIIA 166
            P   +          + +D +  S      G      H+ +   +          +   
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345

Query: 167 SGSLDHEVRLWNASTAE 183
           +  +D  + +W+  + E
Sbjct: 346 TTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 8/124 (6%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
            F  +   +A+ H    V +    + +      G    P       L        +LD +
Sbjct: 250 TFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGLTA-RERFQNLDKK 307

Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGE--LLAVASG---HKLYIWRYNMREETSSP 228
                ++ A           ++ I+  + G+       +      + IW     E     
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367

Query: 229 -RIV 231
            +IV
Sbjct: 368 LKIV 371

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (157), Expect = 9e-12
 Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 21/174 (12%)

Query: 66  CSGSFSQIFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST 125
             G    I     D    +        +  L  +    +    S  +  F+ DG+++ S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWV------------VRFHPLNPTIIASGSLDHE 173
             D +VK+ + Q  +                          V     N   I SGS D  
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRG 331

Query: 174 VRLWNASTAECIGS-RDFYRPIASIA------FHASGELLAVASG-HKLYIWRY 219
           V  W+  +   +   +     + S+A            + A  SG  K  IW+Y
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 8/139 (5%)

Query: 151 TPWVVRFHPLNPTIIASGSLDHEVRLWNAST-----AECIGSRDFYRPIASIAFHASGEL 205
            P+++     +         +    L+N +       E   S D    +  + F   GE 
Sbjct: 17  PPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEY 76

Query: 206 LAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESS 265
           LA        ++R +     +         +    ++     +       +  +  S   
Sbjct: 77  LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS---DLYIRSVCFSPDG 133

Query: 266 LTLATSPGYWRYPPPVICM 284
             LAT           I  
Sbjct: 134 KFLATGAEDRLIRIWDIEN 152

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 25/110 (22%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
              FS DG+ LA+   + T ++     GS +  L             P N    +S S D
Sbjct: 67  CVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDD----SAANKDPENLNTSSSPSSD 121

Query: 172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNM 221
             +R                    S+ F   G+ LA  +  +L       
Sbjct: 122 LYIR--------------------SVCFSPDGKFLATGAEDRLIRIWDIE 151

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
            GD TV+I D +TG C             V   P +   IA+GSLD  VR+W++ T   +
Sbjct: 182 SGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 186 GSRDFYR--------PIASIAFHASGELLAVASGHK 213
              D            + S+ F   G+ +   S  +
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 276

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 1e-11
 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD 171
           +  F+  GK   ST  D+ +       G+ +        +         +   I +GS D
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGD 327

Query: 172 HEVRLWN 178
            +  ++ 
Sbjct: 328 KKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 3/105 (2%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHE 173
            + P G+   +   + +   +          LH H      ++F         S   D+ 
Sbjct: 231 GYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNL 288

Query: 174 VRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-HKLYIW 217
           +  W       I        + S       + +   SG  K  ++
Sbjct: 289 LNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 7/95 (7%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----HGHRRTPWVVRFHPLNPTIIA 166
           A   S   + + +  G   VK+ D         +               +  P +   + 
Sbjct: 56  AVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLI 113

Query: 167 SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA 201
            G     + +W+ +        +      +    A
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.8 bits (151), Expect = 4e-11
 Identities = 15/141 (10%), Positives = 39/141 (27%), Gaps = 8/141 (5%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDH 172
           A     + +  T+  + + ++D  + +  K      +  P      P N T     +   
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 173 EVRLWNASTAECIGSRDF-------YRPIASIAFHASGELLAVASGHKLYIWRYNMREET 225
           ++   +  T +     +         R + S A    G+ +         +  + + +  
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 226 SSPRIVLRTRRSLRAVHFHPH 246
                        + V   P 
Sbjct: 123 RLEVFSTADGLEAKPVRTFPM 143

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.8 bits (125), Expect = 7e-08
 Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 2/117 (1%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
           F  D +  A+    +    +D +TG             +              G   + +
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRL 274

Query: 175 RLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRI 230
             ++    + I + +       +AF   G+ L +    + L ++  +  E+  + ++
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 20/201 (9%), Positives = 49/201 (24%), Gaps = 18/201 (8%)

Query: 105 PPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLH------GHRRTPWVVRF 157
           P       A  +PD +T     +    +  ID  T       +         R+ +    
Sbjct: 37  PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 96

Query: 158 HPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-----YRPIASIAFHASGELLAVASGH 212
            P    + A+ +    +          +           +P+ +        L+  A   
Sbjct: 97  SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156

Query: 213 KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSP 272
            LY+   ++       ++ ++T +   A+             +V      +S     +  
Sbjct: 157 SLYVAGPDIY------KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 273 GYWRYPPPVICMAGAHSSSHP 293
                              + 
Sbjct: 211 YTIARFKDDKQDPATADLLYG 231

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 6/41 (14%), Positives = 13/41 (31%)

Query: 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145
               +    AF   G  L      + + + +  T   +K +
Sbjct: 289 NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.5 bits (142), Expect = 4e-10
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 86  SWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL 145
           + V+                   S     +SPDG  +AS   D T+KI +  T    K +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 146 HGHRRTP-WVVRFHPLNPTIIASGSLDHEVRLWN 178
               R     +         + S S +  +   N
Sbjct: 277 PVGTRIEDQQLGIIW-TKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 8e-10
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL 170
           +    +P G  +   +G  +V  +   + +  ++   H     V +  P +    ASG +
Sbjct: 21  VVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDV 78

Query: 171 DHEVRLWN 178
              VR+W+
Sbjct: 79  HGNVRIWD 86

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 136 CQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA 195
                   + +              + T IAS S D  +++WN +T +   +      I 
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283

Query: 196 S--IAFHASGELLAVASGHK-LYIW 217
              +    + + L   S +  +   
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFV 308

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 5e-10
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 103 LSPPPRSTIAA-AFSPDGKTLASTHGDHTVKIIDCQTGSC---LKVLHGHRRTPWVVRFH 158
           +   P+  I+     P    L  T  D ++ +      +    L     ++       F 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 159 PLNPTIIASGSLDHEVRLWNASTAEC 184
                 I  G++  E+   +   +  
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 17/161 (10%), Positives = 38/161 (23%), Gaps = 18/161 (11%)

Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL- 145
           W                    +    A    + +  A +  D  V +             
Sbjct: 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 146 --------------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY 191
                                  + F P     + +   D  +  WN  T + I +   +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292

Query: 192 RPIASIAFHASGELLAVASGHKLYI--WRYNMREETSSPRI 230
              + +    S  +L +A+    +      +   E ++  I
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 8/86 (9%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST----AECIGSRDFYRPIAS 196
            +++    +     ++  P + +++   S D  + ++         + + S  +  P+  
Sbjct: 3   IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 197 IAFHASGELLAVASGHKLYIWRYNMR 222
             F  + +L       +  I + ++ 
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 194 IASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL 252
           I+ I    S  LL + S    L +++++++ +       LR +  L   +F  +    + 
Sbjct: 14  ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY 73

Query: 253 TA 254
             
Sbjct: 74  VG 75

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.8 bits (140), Expect = 6e-10
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 3/110 (2%)

Query: 139 GSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIAS 196
           GS  +V +GH +    +     +   + S   +  +  W+ ST              I  
Sbjct: 2   GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 197 IAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
           I   + G+L  V+    L +         SS  +  +       +     
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 4e-07
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSL 170
           A + S DGKTL S   +  +   D  TG   +V    H      ++    +   + + S 
Sbjct: 17  ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT--SKGDLFTVSW 74

Query: 171 DHEVRLWNASTAEC 184
           D  +++  A  +  
Sbjct: 75  DDHLKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.1 bits (107), Expect = 8e-06
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 87  WVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL- 145
              + + +         +         ++SPD   LA+   D++V + +    S   ++ 
Sbjct: 204 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 263

Query: 146 -HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
              H  +         N T I S   D  ++ WN
Sbjct: 264 KGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 11/99 (11%), Positives = 25/99 (25%), Gaps = 4/99 (4%)

Query: 124 STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE 183
                     +                          +   +A+GSLD+ V +WN +   
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257

Query: 184 C----IGSRDFYRPIASIAFHASGELLAVASGHKLYIWR 218
                I        + S+ +     +++      +  W 
Sbjct: 258 DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 14/139 (10%), Positives = 34/139 (24%)

Query: 108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS 167
            +++      +   + +   D  +++ D      L  L GH    W +++      +  S
Sbjct: 12  MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGS 71

Query: 168 GSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSS 227
                 V          +                      V       +  + + +E+S 
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 131

Query: 228 PRIVLRTRRSLRAVHFHPH 246
           P         L       +
Sbjct: 132 PDHGEEHDYPLVFHTPEEN 150

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 86  SWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV- 144
           +                       +    F      L S   ++   I + ++G  +   
Sbjct: 261 ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN 319

Query: 145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLW 177
           +       W V F     T++A+   D +  L 
Sbjct: 320 ILKDADQIWSVNFKG--KTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 3/97 (3%)

Query: 126 HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI 185
                  I         +    H      +    ++  I+ SGS +++  ++N  + + +
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316

Query: 186 GS--RDFYRPIASIAFHASGELLAVASGHKLYIWRYN 220
            +        I S+ F     + AV    + ++   +
Sbjct: 317 HANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 12/144 (8%)

Query: 117 PDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRL 176
            D K + S  GD T+K+ +  T   ++ L+GH      +        ++ SGS D+ +RL
Sbjct: 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQYRDRLVVSGSSDNTIRL 202

Query: 177 WNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRR 236
           W+     C+   + +  +       +  +++ A   K+ +W      +  +P   L  R 
Sbjct: 203 WDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 262

Query: 237 ------SLRAVHFHPHAAPLLLTA 254
                  +  + F       ++++
Sbjct: 263 LVEHSGRVFRLQFDEF---QIVSS 283

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 12/112 (10%)

Query: 115 FSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEV 174
                + + S   D+T+++ D + G+CL+VL GH     +VR    +   I SG+ D ++
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH---EELVRCIRFDNKRIVSGAYDGKI 240

Query: 175 RLWNASTAECIGSRDFYRPIASIAFHA--------SGELLAVASG-HKLYIW 217
           ++W+   A    +      + ++  H+            +  +S    + IW
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 93  LHHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG---------SCLK 143
           L  +    C         +      D K + S   D  +K+ D              CL+
Sbjct: 202 LWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 261

Query: 144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWN 178
            L  H    + ++F       I S S D  + +W+
Sbjct: 262 TLVEHSGRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
               D + + S   D+T+KI D  T  C ++L GH  +   +++  
Sbjct: 20  CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG 186
           G H+++ I C++           +  + +++   +   I SG  D+ +++W+ +T EC  
Sbjct: 1   GRHSLQRIHCRSE--------TSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKR 49

Query: 187 S 187
            
Sbjct: 50  I 50

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.3 bits (137), Expect = 3e-09
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 6/118 (5%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-----HGHRRTPWVVRFHPLNPTIIA 166
            +  S  G+ L     D  + +ID       KV         R           +   IA
Sbjct: 66  ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125

Query: 167 SGSLDHEVRLWNASTAECIGSRDF-YRPIASIAFHASGELLAVASGHKLYIWRYNMRE 223
                 +  + +  T E           + +  +H    + A+ + H+   +  N++E
Sbjct: 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 4e-07
 Identities = 19/160 (11%), Positives = 40/160 (25%), Gaps = 11/160 (6%)

Query: 103 LSPPPRSTIAAAFSPDGKTLA--STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL 160
           L  P           D   L   +      + ++D  +   +KV+        + R    
Sbjct: 14  LVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA- 71

Query: 161 NPTIIASGSLDHEVRLWNASTAEC-----IGSRDFYRPIA-SIAFHASGELLAVASGHKL 214
           +   +     D  + + +    E      I      R +  S             +    
Sbjct: 72  SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPP 131

Query: 215 YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA 254
                +  E     +IV     ++    +HP      + A
Sbjct: 132 QFAIMDG-ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 26/202 (12%), Positives = 57/202 (28%), Gaps = 18/202 (8%)

Query: 73  IFEAGRDARRGLASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTLAST-HGDHTV 131
           +   GRDAR  +      E       K            +     + +   +  +     
Sbjct: 76  LLVIGRDARIDMIDLWAKEPTKVAEIKIG--IEARSVESSKFKGYEDRYTIAGAYWPPQF 133

Query: 132 KIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI------ 185
            I+D +T    +++     T     +HP         S +H   + N      +      
Sbjct: 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193

Query: 186 -------GSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMRE--ETSSPRIVLRTRR 236
                   S      +A   + +S      A+ +   +   + ++   ++   +      
Sbjct: 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253

Query: 237 SLRAVHFHPHAAPLLLTAEVND 258
              A   HP   P+  T+ + D
Sbjct: 254 GRGANFVHPKYGPVWSTSHLGD 275

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 8e-04
 Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 17/148 (11%)

Query: 105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
           P      + +   DG                      +  L G       ++ HP +  +
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YAWKKVAELQGQGGGSLFIKTHPKSSHL 318

Query: 165 IA------SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAV-----ASGHK 213
                      +   V +++    +         PIA  A    G    V       G +
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQV---LPIAEWADLGEGAKRVVQPEYNKRGDE 375

Query: 214 LYIWRYNMREETSSPRIVLRTRRSLRAV 241
           ++   +N + ++S+  +V      L+AV
Sbjct: 376 VWFSVWNGKNDSSALVVVDDKTLKLKAV 403

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 3e-09
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRRT 151
                       P +  I A    D +  A+   D T+++ D  T  C++       +  
Sbjct: 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297

Query: 152 PWVVRFHPLNPTIIASGSLDHEVRLWN 178
              V         I S SLD  +  + 
Sbjct: 298 NQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 7e-08
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 18/169 (10%)

Query: 103 LSPPPRST----IAAAFSPDGKTLASTHGDHT-VKIIDCQTGS--CLKVLHGHRRTP-WV 154
           + P P +        ++ P    +A   G    V+ +D        +    GH  +    
Sbjct: 9   IPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT 68

Query: 155 VRFHPL-NPTIIASGSLDHEVRLWNASTAECIGSRDFYR---------PIASIAFHASGE 204
           V+F P+     + SG    +V +W  +  +   S +            PI+ I++   G 
Sbjct: 69  VKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR 128

Query: 205 LLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT 253
            L V    +     +   +  +S   V    + + A H         +T
Sbjct: 129 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 9/77 (11%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 146 HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECI-----GSRDFYRPIASIAFH 200
                   +     L+    A+   D  +R+W+ +T++C+       +        +   
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT 306

Query: 201 ASGELLAVASGHKLYIW 217
            +G +++++    L  +
Sbjct: 307 GNGRIISLSLDGTLNFY 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 11/119 (9%), Positives = 26/119 (21%), Gaps = 5/119 (4%)

Query: 111 IAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV-LHGHRRTPWVVRFHPLNPTIIASGS 169
                  D      T     +  +D +TG      +       +    +P          
Sbjct: 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA---FG 257

Query: 170 LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSS 227
             + +  ++      I          S+     G  + +      L  +     E+   
Sbjct: 258 AYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 122 LASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA 179
           + +      + +ID +  +  KV+       TP V    P      A+ +    +   + 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 180 STAECIGSRDFYRP------IASIAFHASGELLAVASGHKLYIWRYN 220
            T E +G  D   P      +   A    G+ LA+          + 
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 17/147 (11%)

Query: 99  KYCPLSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRF 157
           K   ++    + +    +P G+   A+ +   ++  ID  TG  L  +        V   
Sbjct: 25  KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL 84

Query: 158 HPL----NPTIIASGSLDHEVRL------------WNASTAECIGSRDFYRPIASIAFHA 201
                  +   +A       + L            ++A T     + +  R I  +A+  
Sbjct: 85  FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR 144

Query: 202 SGELLAVASGHKLYIWRYNMREETSSP 228
            G  L         +           P
Sbjct: 145 DGSKLYGLGRDLHVMDPEAGTLVEDKP 171

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL----HGHRRTPWVVRF 157
           +   S DG T+        +   D +T      +    +       V  F
Sbjct: 284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLF 333

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 7e-08
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVLHGHRRTP 152
                K   +S  P    A     +   +A+   D  + I   +     +K L+ H+   
Sbjct: 202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 261

Query: 153 WVVRFHPLNPTIIASGSLDHEVRLWN 178
             + +    P+ + S   D  ++ WN
Sbjct: 262 NNLLWET--PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 8e-08
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 141 CLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFH 200
            LK + GH +    +  +PL      SGS D  +  W++S+      +D    I S+   
Sbjct: 5   VLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSS----MHQDHSNLIVSLDNS 55

Query: 201 ASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH 246
            + E  +++    L +      E  S P++         AV  +  
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD 101

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 10/93 (10%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST-AECIG 186
              VK       +        +          +   ++A+GSLD  + +++     + I 
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252

Query: 187 SRDFYR-PIASIAFHASGELLAVASGHKLYIWR 218
           + + ++  + ++ +     L++  +   +  W 
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 13/126 (10%), Positives = 30/126 (23%), Gaps = 7/126 (5%)

Query: 71  SQIFEAGRDARRGLASWVEAESLHHLRPK-YCPLSPPPRSTIAAAFSPDGKTLASTHGDH 129
           S   EAG      +       ++     +   PL                          
Sbjct: 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 298

Query: 130 TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD 189
            +   D +T      +   +     +R    +   +     D ++  +     E   + +
Sbjct: 299 VLLKYDVKTRK----VTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

Query: 190 F-YRPI 194
              RP+
Sbjct: 354 TDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 109 STIAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIAS 167
           S  A  FSP DG  +A         I D      LKV    R     VR           
Sbjct: 4   SKFAEDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKVPEPLR--IRYVRRGGDTKVAFIH 60

Query: 168 GSLDHE-VRLWNASTAECIGSRDFYRPIASIAFH 200
           G+ + + + +++  T +     +    + ++   
Sbjct: 61  GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVD 94

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 6e-07
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 12/84 (14%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSC------------LKVLHGHRRTPWVVRFHPLN 161
           + S       S  GD  +K+ D +                 K    H      +      
Sbjct: 19  SVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78

Query: 162 PTIIASGSLDHEVRLWNASTAECI 185
             ++A+ S   ++  +  +  +  
Sbjct: 79  LCLVATTSFSGDLLFYRITREDET 102

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 114 AFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWVVRFHPLNPTIIASGS 169
           +F+  G+TL S   D  ++  D +T   +  L+ H         ++       ++   G 
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355

Query: 170 LDHEVRLWNASTAECIGSRDFYRPIASIAF 199
            D  V+         +G+ D    +  +  
Sbjct: 356 FD--VKFLKKGWRSGMGA-DLNESLCCVCL 382

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 2/87 (2%)

Query: 102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL- 160
            ++                          V ++D +TG  L            +      
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDE 311

Query: 161 NPTIIASGSLDHEVRLWNASTAECIGS 187
            P + A  + D  + + +A + E + S
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRS 338

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (114), Expect = 2e-06
 Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 16/154 (10%)

Query: 110 TIAAAFSPDGKTL-----ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTI 164
            I  A +PD + +     A         +ID + G  + ++ G                I
Sbjct: 4   RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFI 61

Query: 165 ---------IASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLY 215
                    IA G     V +++  T       +       +             G  L 
Sbjct: 62  AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121

Query: 216 IWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAP 249
            ++++         +  +  + +  V    H  P
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP 155

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 105 PPPRSTIAAAFSPDGKTL--ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHP 159
                  +   S D K L  A + GD T+ I D ++G  L+ ++     P V+    
Sbjct: 297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 19/148 (12%), Positives = 33/148 (22%), Gaps = 26/148 (17%)

Query: 114 AFSPDGKTLAST----------HGDHTVKIIDCQTGSCLKVLHGHRRT-------PWVVR 156
             + DG  +A                 V++ D  T      +             PW+  
Sbjct: 53  VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS 112

Query: 157 FHPLNPTII-ASGSLDHEVRLWNASTAECIGSRD--------FYRPIASIAFHASGELLA 207
             P   T++    S    V + +          D           P         G L  
Sbjct: 113 LTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK 172

Query: 208 VASGHKLYIWRYNMREETSSPRIVLRTR 235
           VA G +      +          ++   
Sbjct: 173 VAFGTEGTPEITHTEVFHPEDEFLINHP 200

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 21/130 (16%), Positives = 33/130 (25%), Gaps = 24/130 (18%)

Query: 112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGHRRTPWVVRFHPLNPTIIA--- 166
             A+S     L        +  ID  +G    L  +           + P     +A   
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258

Query: 167 ----------------SGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS 210
                             +    V + +A T E +   +    I SI      + L  A 
Sbjct: 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318

Query: 211 G---HKLYIW 217
                 LYI 
Sbjct: 319 STGDKTLYIH 328

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 127 GDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC 184
               + +ID  +      +      P      P    +  + +  ++V + + +T   
Sbjct: 10  ESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 1/94 (1%)

Query: 94  HHLRPKYCPLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW 153
            +       +   P                     +TV +ID  T      +      P 
Sbjct: 189 TNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PA 247

Query: 154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS 187
            +   P    +  + S  + V + + +T     +
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT 281

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 112 AAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVL 145
             A +PDGK +  +    +TV +ID  T +    +
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 7/104 (6%), Positives = 27/104 (25%), Gaps = 6/104 (5%)

Query: 124 STHGDHTVKIIDCQTGSCLKVLH--GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAST 181
           ++     + + +      L +            +   P    +      +  V  +  + 
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 182 AECIGSRDFYRPI----ASIAFHASGELLAVASGHKLYIWRYNM 221
            +   +      +      I+    G+ + V S +   +    +
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 31/289 (10%), Positives = 63/289 (21%), Gaps = 43/289 (14%)

Query: 109 STIAAAFSPDGKTL-----ASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPT 163
           S+         +       A   G     +     G  L    G      +         
Sbjct: 21  SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA--FLSLAVAGHSGSD 78

Query: 164 I---------IASGSLDHEVRLWNASTAECIGSRDFYRPIA--------SIAFHASGELL 206
                      A G     V +++  T   I   +               I   AS   L
Sbjct: 79  FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138

Query: 207 AVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSL 266
                        ++   +       +  +S    H HP AA            +S ++ 
Sbjct: 139 LFFLFGSSAAAGLSVPGAS-----DDQLTKSASCFHIHPGAAATHYL---GSCPASLAAS 190

Query: 267 TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHD 326
            LA +P                  +    A+           P  +      S+   +  
Sbjct: 191 DLAAAPAAAG-----------IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

Query: 327 SGATRTQQSLRSSSSVRLLTYSTPSGQYELVLSPIASNRSSPMPDGTGT 375
           +     + ++  + S R       +G   +              + + +
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRS 288

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	730
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.9
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.9
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.88
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.87
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.86
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.86
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.84
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.84
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.83
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.83
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.83
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.78
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.78
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.77
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.75
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.74
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.73
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.73
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.73
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.72
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.71
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.69
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.68
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.67
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.65
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.6
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.54
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.53
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.53
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.51
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.42
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.33
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.33
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.18
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.17
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.11
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.06
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.06
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.94
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.94
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.42
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.32
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.93
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.8
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.79
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.7
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.68
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.62
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.58
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.43
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.39
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.67
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.21
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.96
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.68
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.5
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.21
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	93.09
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.74
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	92.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.93
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.54
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.48
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.28
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	91.26
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	91.25
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.41
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.27
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.08
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.19
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.55
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	84.76

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-21  Score=204.13  Aligned_cols=215  Identities=18%  Similarity=0.178  Sum_probs=178.7

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH  148 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH  148 (730)
                      ++...++..|++++.|++|++||....      .+..|...|.++.|+|++.+|++++.|+.|++||+.+++....+.+|
T Consensus       103 v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             EEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445567889999999999999998754      35689999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccC
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSS  227 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~  227 (730)
                      ...|.+++|++ ++..+++++.|+.|++||+++++.+..+.+...|.+++|+|++++|++++.++ |++||++..+..  
T Consensus       183 ~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--  259 (337)
T d1gxra_         183 TDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--  259 (337)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--
T ss_pred             ccccccccccc-cccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc--
Confidence            99999999999 89999999999999999999999999999999999999999999999998555 999999887643  


Q ss_pred             CeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCce
Q 004785          228 PRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFL  307 (730)
Q Consensus       228 ~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil  307 (730)
                        ....|...|.+++|+|+|+++++++..                       ..+.+|+...........    ...++.
T Consensus       260 --~~~~~~~~i~~v~~s~~g~~l~s~s~D-----------------------g~i~iwd~~~~~~~~~~~----~~~~v~  310 (337)
T d1gxra_         260 --QLHLHESCVLSLKFAYCGKWFVSTGKD-----------------------NLLNAWRTPYGASIFQSK----ESSSVL  310 (337)
T ss_dssp             --EECCCSSCEEEEEECTTSSEEEEEETT-----------------------SEEEEEETTTCCEEEEEE----CSSCEE
T ss_pred             --cccccccccceEEECCCCCEEEEEeCC-----------------------CeEEEEECCCCCEEEEcc----CCCCEE
Confidence              467789999999999999987766531                       123344433322221111    233566


Q ss_pred             eeeEecCCCEEEEE
Q 004785          308 RPSFVRDDERISLQ  321 (730)
Q Consensus       308 ~p~FSpDg~rI~~~  321 (730)
                      .+.|++|++.|+..
T Consensus       311 ~~~~s~d~~~l~t~  324 (337)
T d1gxra_         311 SCDISVDDKYIVTG  324 (337)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             EEEEeCCCCEEEEE
Confidence            78999999998864

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=3.6e-22  Score=207.68  Aligned_cols=192  Identities=14%  Similarity=0.165  Sum_probs=159.7

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEE
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLK  143 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~  143 (730)
                      ...++...++..|++++.|++|++||....      .+.+|...|.+++|+|++++|++++.  +..++||++++++.+.
T Consensus        61 v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~  140 (311)
T d1nr0a1          61 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG  140 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred             EEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccc
Confidence            334445567899999999999999998765      25689999999999999999999986  4569999999999999


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t  221 (730)
                      .+.+|...|.+++|+|++..++++|+.|+.|++||+++++....+. |...|.++.|+|++++|++++. +.|++||+.+
T Consensus       141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccc
Confidence            9999999999999999445578999999999999999998887764 7889999999999999999985 4599999988


Q ss_pred             Ccccc----CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCC
Q 004785          222 REETS----SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSE  263 (730)
Q Consensus       222 ~~~~~----~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~  263 (730)
                      +....    ......+|...|++++|+|++++|++++.     +|++..++
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            76432    11233468889999999999998887653     55555443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=8e-22  Score=199.42  Aligned_cols=174  Identities=18%  Similarity=0.266  Sum_probs=139.1

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEE-------------------
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKII-------------------  134 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVW-------------------  134 (730)
                      ...+..|++++.|++|++||..++    .+..|...|.+++|+|++++|++++.|+.+++|                   
T Consensus        64 s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  143 (340)
T d1tbga_          64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT  143 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS
T ss_pred             CCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccc
Confidence            345667777777777777777665    355677777777777777776666555555554                   


Q ss_pred             --------------------------------------------------------------------ECCCCeEEEEEe
Q 004785          135 --------------------------------------------------------------------DCQTGSCLKVLH  146 (730)
Q Consensus       135 --------------------------------------------------------------------Dl~tg~~l~~l~  146 (730)
                                                                                          |+++++.+..+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~  223 (340)
T d1tbga_         144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEe
Confidence                                                                                445566677788


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCC
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGH-KLYIWRYNMR  222 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~  222 (730)
                      +|...|++++|+| ++++|++++.|+.|++||+...+.+..+.   +...|.+++|+|+|++|++|+.+ .|+|||+.++
T Consensus       224 ~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  302 (340)
T d1tbga_         224 GHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC
Confidence            8999999999999 99999999999999999999988877653   56689999999999999999955 4999999988


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +...   .+.+|...|++++|+|++++|++++.
T Consensus       303 ~~~~---~~~~H~~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         303 DRAG---VLAGHDNRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             CEEE---EECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             cEEE---EEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence            7644   67789999999999999998877664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3.2e-22  Score=211.35  Aligned_cols=217  Identities=16%  Similarity=0.186  Sum_probs=164.7

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE--EEEEecC
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVLHGH  148 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l~gH  148 (730)
                      ...++..|++++.|+.|++||..++      .+.+|.+.|.+++|+|++++|++++.|++|+|||+.++..  ...+.+|
T Consensus        15 ~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~   94 (371)
T d1k8kc_          15 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI   94 (371)
T ss_dssp             ECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCC
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccc
Confidence            3457789999999999999998765      3679999999999999999999999999999999987764  3455788


Q ss_pred             CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-----ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCC
Q 004785          149 RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-----RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMR  222 (730)
Q Consensus       149 ~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-----l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~  222 (730)
                      ...|.+++|+| +++.+++++.|++|++|++........     ..|...|.+++|+|+|++|++++. +.|++||....
T Consensus        95 ~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_          95 NRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             SSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             ccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence            99999999999 899999999999999999876543222     237789999999999999999985 45999998654


Q ss_pred             cccc---------------CCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecC
Q 004785          223 EETS---------------SPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGA  287 (730)
Q Consensus       223 ~~~~---------------~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~  287 (730)
                      ....               .......|...|.+++|+|+|+++++++..                       ..+.+|+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----------------------~~i~iwd~  230 (371)
T d1k8kc_         174 EVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----------------------STVCLADA  230 (371)
T ss_dssp             TTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----------------------TEEEEEEG
T ss_pred             ccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----------------------CcceEEee
Confidence            3211               012334678889999999999987766531                       12333333


Q ss_pred             CCCCCCCcccccCCCCCCceeeeEecCCCEEEE
Q 004785          288 HSSSHPGLAEEVPLITPPFLRPSFVRDDERISL  320 (730)
Q Consensus       288 ~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~  320 (730)
                      ..+.....   ......++..+.|++|++.|+.
T Consensus       231 ~~~~~~~~---~~~~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         231 DKKMAVAT---LASETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             GGTTEEEE---EECSSCCEEEEEEEETTEEEEE
T ss_pred             ecccceee---eecccccceeeeecCCCCEEEE
Confidence            22221111   1112346678899999977765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.89  E-value=7e-22  Score=205.45  Aligned_cols=175  Identities=15%  Similarity=0.115  Sum_probs=146.9

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR  149 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~  149 (730)
                      +....+..|+.+ .++.|.+|++.+.    .+.+|...|++++|+|||++|++|+.|++|+|||+.+++..  ..+.+|.
T Consensus        24 a~~~~g~~l~~~-~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~  102 (311)
T d1nr0a1          24 GNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS  102 (311)
T ss_dssp             EECTTSSEEEEE-ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSS
T ss_pred             EEcCCCCEEEEE-eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccccc
Confidence            344566677666 4677999999875    35799999999999999999999999999999999887643  5678999


Q ss_pred             CCcEEEEEccCCCCEEEEEeC--CCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCE-EEEEECC-eEEEEEcCCCcc
Q 004785          150 RTPWVVRFHPLNPTIIASGSL--DHEVRLWNASTAECIGSRD-FYRPIASIAFHASGEL-LAVASGH-KLYIWRYNMREE  224 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~--DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~-LAsgSdd-~I~VWDl~t~~~  224 (730)
                      +.|.+++|+| +++++++++.  +..+++||+.+++....+. |...|.+++|+|++++ |++|+++ .|++||+++.+.
T Consensus       103 ~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~  181 (311)
T d1nr0a1         103 GPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF  181 (311)
T ss_dssp             SCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred             Cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccc
Confidence            9999999999 8888888875  4669999999988877654 7889999999999985 7778754 499999998775


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..   ....|...|+++.|+|+++++++++.
T Consensus       182 ~~---~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         182 KS---TFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             EE---EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cc---ccccccccccccccCccccccccccc
Confidence            43   67788999999999999998777664

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.3e-21  Score=199.28  Aligned_cols=215  Identities=12%  Similarity=0.079  Sum_probs=170.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC--CeEEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT--GSCLK  143 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t--g~~l~  143 (730)
                      ++...+++.|++++ |+.|++||+...         ...+|.+.|.+++|+|||++|++++.|++|++||+..  ++...
T Consensus        57 v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~  135 (337)
T d1gxra_          57 VTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA  135 (337)
T ss_dssp             EEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE
T ss_pred             EEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc
Confidence            44556888999987 789999998754         1357999999999999999999999999999999875  45667


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCC
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNM  221 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t  221 (730)
                      .+..|...+..+.|+| ++.++++++.|+.|++||+.+++...... |...|.+++|+++++.+++++. +.|++||+++
T Consensus       136 ~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~  214 (337)
T d1gxra_         136 ELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7889999999999999 99999999999999999999998877654 7889999999999999999985 5599999998


Q ss_pred             CccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCC
Q 004785          222 REETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPL  301 (730)
Q Consensus       222 ~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~  301 (730)
                      ++.+.    ...+...|.+++|+|+++++++++...                       .+.+++...++....    ..
T Consensus       215 ~~~~~----~~~~~~~i~~l~~~~~~~~l~~~~~d~-----------------------~i~i~d~~~~~~~~~----~~  263 (337)
T d1gxra_         215 GRQLQ----QHDFTSQIFSLGYCPTGEWLAVGMESS-----------------------NVEVLHVNKPDKYQL----HL  263 (337)
T ss_dssp             TEEEE----EEECSSCEEEEEECTTSSEEEEEETTS-----------------------CEEEEETTSSCEEEE----CC
T ss_pred             ceeec----ccccccceEEEEEcccccccceecccc-----------------------ccccccccccccccc----cc
Confidence            87543    556889999999999999877665311                       223333222221111    11


Q ss_pred             CCCCceeeeEecCCCEEEEEe
Q 004785          302 ITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       302 ~slpil~p~FSpDg~rI~~~~  322 (730)
                      ...++..+.|++|++.++...
T Consensus       264 ~~~~i~~v~~s~~g~~l~s~s  284 (337)
T d1gxra_         264 HESCVLSLKFAYCGKWFVSTG  284 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccceEEECCCCCEEEEEe
Confidence            233566789999999888643

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=3.1e-21  Score=195.07  Aligned_cols=192  Identities=16%  Similarity=0.170  Sum_probs=142.4

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeC-----------
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSL-----------  170 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~-----------  170 (730)
                      +|.||.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+| ++.++++++.           
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~  128 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSS
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccc
Confidence            4789999999999999999999999999999999999999999999999999999999 5555555444           


Q ss_pred             ----------------------------------------------------------------------------CCcE
Q 004785          171 ----------------------------------------------------------------------------DHEV  174 (730)
Q Consensus       171 ----------------------------------------------------------------------------DgtV  174 (730)
                                                                                                  |+.|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v  208 (340)
T d1tbga_         129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA  208 (340)
T ss_dssp             SCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             cccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceE
Confidence                                                                                        4555


Q ss_pred             EEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          175 RLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       175 rLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      ++||+++++++..+. |...|.+++|+|++++|++++.+ .|++||++...... ......+...|.+++|+|+++++++
T Consensus       209 ~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-TYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-EECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccc-ccccccccCceEEEEECCCCCEEEE
Confidence            555555555555543 67889999999999999999955 49999998876533 1123345678999999999998777


Q ss_pred             EEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       253 tgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                      ++...                       .+.+|+..+.+.....   .+...++..++|++|++.|+..
T Consensus       288 g~~dg-----------------------~i~iwd~~~~~~~~~~---~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         288 GYDDF-----------------------NCNVWDALKADRAGVL---AGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EETTS-----------------------CEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSCEEEE
T ss_pred             EECCC-----------------------EEEEEECCCCcEEEEE---cCCCCCEEEEEEeCCCCEEEEE
Confidence            65311                       2333333222221111   1223356678899999988763

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.2e-20  Score=186.89  Aligned_cols=177  Identities=18%  Similarity=0.298  Sum_probs=157.2

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT  151 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~  151 (730)
                      .....+..+++++.|+.+++||..++    .+.+|...+.+++|++++++|++++.|+.|++|++.+++.+..+.+|...
T Consensus       108 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~  187 (317)
T d1vyhc1         108 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  187 (317)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             eccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCC
Confidence            34456788999999999999999876    46789999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccCC-------------------CCEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC
Q 004785          152 PWVVRFHPLN-------------------PTIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       152 V~sVafSP~d-------------------g~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd  211 (730)
                      +.++.|+|+.                   +.++++++.|+.|++||+.+++++..+ .|...|.+++|+|+|++|++++.
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  267 (317)
T d1vyhc1         188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD  267 (317)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             ceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC
Confidence            9999998832                   357899999999999999999988876 48889999999999999999985


Q ss_pred             -CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          212 -HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       212 -d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       +.|+|||+++++.+.   .+..|...|++++|+|++++|++++.
T Consensus       268 dg~i~iwd~~~~~~~~---~~~~h~~~V~~~~~s~~~~~l~s~s~  309 (317)
T d1vyhc1         268 DKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYVVTGSV  309 (317)
T ss_dssp             TTEEEEECCTTSCCCE---EEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             CCeEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence             559999999887543   77889999999999999998887654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.7e-19  Score=178.45  Aligned_cols=237  Identities=19%  Similarity=0.249  Sum_probs=186.3

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcE
Q 004785           78 RDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPW  153 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~  153 (730)
                      ...+..|++++.|++|++||..++    .+.+|...|.+++|++++.+++++..++.+.+|+....+....+.+|...+.
T Consensus        26 sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (317)
T d1vyhc1          26 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS  105 (317)
T ss_dssp             CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccce
Confidence            346789999999999999999876    3678999999999999999999999999999999999998888999999999


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEE
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIV  231 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l  231 (730)
                      ++.|+| +++.+++++.|+.+++||+++++.+..+. |...+.+++|+|++++|++++.+ .|++|++.+.+...   .+
T Consensus       106 ~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~---~~  181 (317)
T d1vyhc1         106 SVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA---EL  181 (317)
T ss_dssp             EEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EE
T ss_pred             eeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeE---EE
Confidence            999999 89999999999999999999998887764 78899999999999999999955 49999998877543   56


Q ss_pred             ecCCCCeEEEEEccCCCe--------------------EEEEEe-----eCCccCCCcceeEeccCCccc----------
Q 004785          232 LRTRRSLRAVHFHPHAAP--------------------LLLTAE-----VNDLDSSESSLTLATSPGYWR----------  276 (730)
Q Consensus       232 ~~h~~~V~sVaFSPdG~~--------------------Llatgs-----vwdl~s~~~~~~l~t~sG~~~----------  276 (730)
                      ..|...+..+.|+|++..                    +++++.     +|++..+.....+..+.+.+.          
T Consensus       182 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  261 (317)
T d1vyhc1         182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF  261 (317)
T ss_dssp             CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSC
T ss_pred             ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCE
Confidence            677888888888876542                    333222     566665554444433222211          


Q ss_pred             ----CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEE
Q 004785          277 ----YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQ  321 (730)
Q Consensus       277 ----~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~  321 (730)
                          .....+.+|+..++.......   ....++..++|++|++.|+..
T Consensus       262 l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~V~~~~~s~~~~~l~s~  307 (317)
T d1vyhc1         262 ILSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTG  307 (317)
T ss_dssp             EEEEETTTEEEEECCTTSCCCEEEE---CCSSCEEEEEECSSSSCEEEE
T ss_pred             EEEEECCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEE
Confidence                012456777776665544332   234567788999999988863

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=8.7e-20  Score=189.84  Aligned_cols=227  Identities=18%  Similarity=0.219  Sum_probs=167.1

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC----------------------CCCCCCCeEEEEECCCCCEEEEEeCCCeEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCP----------------------LSPPPRSTIAAAFSPDGKTLASTHGDHTVK  132 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----------------------L~gH~~~Vt~lafSPDG~~LaSgS~DgtVr  132 (730)
                      ++...++..|++|+ |++|++||+.++.                      ...|...|++++|+|||++|++|+.|+.|+
T Consensus        68 l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~  146 (388)
T d1erja_          68 VKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR  146 (388)
T ss_dssp             EEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccccccc
Confidence            33445778898886 8999999987642                      235778899999999999999999999999


Q ss_pred             EEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 004785          133 IIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHA-SGELLAVASG  211 (730)
Q Consensus       133 VWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSP-dG~~LAsgSd  211 (730)
                      +||..+++.+..+.+|...|.++.|++ ++..+++++.++.|++||..+........+......+.|++ ++++|++++.
T Consensus       147 i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  225 (388)
T d1erja_         147 IWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL  225 (388)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC
Confidence            999999999999999999999999999 89999999999999999999998888877777777777765 7889999985


Q ss_pred             C-eEEEEEcCCCccccC----CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCe
Q 004785          212 H-KLYIWRYNMREETSS----PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPV  281 (730)
Q Consensus       212 d-~I~VWDl~t~~~~~~----~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~  281 (730)
                      + .|++||+.++.....    ......|...|.+++|+|+++++++++.     +|++...............     ..
T Consensus       226 d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~  300 (388)
T d1erja_         226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG-----TC  300 (388)
T ss_dssp             TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------CE
T ss_pred             CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc-----ce
Confidence            4 599999988765331    1223467889999999999998877654     5555543332211111000     01


Q ss_pred             EEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEe
Q 004785          282 ICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQH  322 (730)
Q Consensus       282 V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~  322 (730)
                      ..              ........+..++|++|++.|+...
T Consensus       301 ~~--------------~~~~~~~~v~~~~~s~~~~~l~sg~  327 (388)
T d1erja_         301 EV--------------TYIGHKDFVLSVATTQNDEYILSGS  327 (388)
T ss_dssp             EE--------------EEECCSSCEEEEEECGGGCEEEEEE
T ss_pred             ee--------------ecccccceEEEEEECCCCCEEEEEe
Confidence            11              1111233456789999999988743

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.84  E-value=1.3e-19  Score=182.75  Aligned_cols=179  Identities=13%  Similarity=0.109  Sum_probs=140.9

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC----C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCP----L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------  140 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~----L-~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---------  140 (730)
                      .+...++..|++++.|++|++||+.+++    + .+|...|++++|+|+|++ ++++.|+.+++|+.....         
T Consensus        18 l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~   96 (299)
T d1nr0a2          18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVDSSKAVAN   96 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCccccccccccc
Confidence            3344577899999999999999998763    3 578999999999999865 556678999999874321         


Q ss_pred             ------------------------EEEEE-------ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE--E
Q 004785          141 ------------------------CLKVL-------HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--S  187 (730)
Q Consensus       141 ------------------------~l~~l-------~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~--~  187 (730)
                                              .+..+       ......+.+++|+| +++++++++.|+.|++||+++++...  .
T Consensus        97 ~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~  175 (299)
T d1nr0a2          97 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT  175 (299)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence                                    00000       01234577889999 88999999999999999999887543  4


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          188 RDFYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       188 l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..|...|.+++|+|++++|++++.+ .|++||+.++........+..|...|++++|+|+++++++++.
T Consensus       176 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         176 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence            5688999999999999999999854 5999999887665544556778999999999999998776653

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1.2e-19  Score=191.43  Aligned_cols=175  Identities=16%  Similarity=0.173  Sum_probs=145.5

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE----EEE
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC----LKV  144 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~----l~~  144 (730)
                      ++....+..|++++.|++|++||...+      .+.+|...|++++|+|++++|++++.|++|++|++.....    ...
T Consensus        57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence            334457789999999999999998765      3678999999999999999999999999999999876543    233


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCe------------------EEEE-ecCCCCeEEEEEcCCCCE
Q 004785          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAE------------------CIGS-RDFYRPIASIAFHASGEL  205 (730)
Q Consensus       145 l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~------------------~i~~-l~h~~~V~sVafSPdG~~  205 (730)
                      .+.|...|.+++|+| ++.+|++|+.|++|++||+....                  .+.. ..|...|.+++|+|+|++
T Consensus       137 ~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             CTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             ccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence            467899999999999 99999999999999999986432                  2222 347788999999999999


Q ss_pred             EEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          206 LAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       206 LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      |++++. +.|++||+..+....   .+..|..+|.+++|+||++++ +++
T Consensus       216 l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~s~~fs~d~~~l-a~g  261 (371)
T d1k8kc_         216 VAWVSHDSTVCLADADKKMAVA---TLASETLPLLAVTFITESSLV-AAG  261 (371)
T ss_dssp             EEEEETTTEEEEEEGGGTTEEE---EEECSSCCEEEEEEEETTEEE-EEE
T ss_pred             ccccccCCcceEEeeeccccee---eeecccccceeeeecCCCCEE-EEE
Confidence            999995 459999998877544   667788999999999999854 444

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=7.4e-19  Score=182.72  Aligned_cols=192  Identities=22%  Similarity=0.265  Sum_probs=154.2

Q ss_pred             EecCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCc
Q 004785           77 GRDARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTP  152 (730)
Q Consensus        77 ~~d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V  152 (730)
                      ...++..|++++.|+.|++|+...+    .+.+|...|.++.|++++..+++++.++.|++||..+.........+.. .
T Consensus       129 ~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~  207 (388)
T d1erja_         129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-V  207 (388)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-E
T ss_pred             ECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc-c
Confidence            3456789999999999999999876    3678999999999999999999999999999999999988877765554 5


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe--------cCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCc
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR--------DFYRPIASIAFHASGELLAVASG-HKLYIWRYNMRE  223 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l--------~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~  223 (730)
                      ..+.|++.++++|++++.|+.|++||+.++.....+        .|...|.+++|+|++++|++++. +.|++||+++..
T Consensus       208 ~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             ccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence            667777768899999999999999999998876654        36778999999999999999995 459999998764


Q ss_pred             ccc---------CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEe
Q 004785          224 ETS---------SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLA  269 (730)
Q Consensus       224 ~~~---------~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~  269 (730)
                      ...         .......|...|.+++|+|+|++|++++.     +|++..++....+.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            321         12244567889999999999998877654     77777665544444

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.8e-20  Score=199.29  Aligned_cols=173  Identities=20%  Similarity=0.228  Sum_probs=143.6

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC----------------------CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 004785           81 RRGLASWVEAESLHHLRPKYC----------------------PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT  138 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~----------------------~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t  138 (730)
                      ...+++++.|++|++|++...                      ....+...+.+++|+||+ +|++|+.|++|+|||+.+
T Consensus       136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~  214 (393)
T d1sq9a_         136 SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST  214 (393)
T ss_dssp             CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT
T ss_pred             ccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc
Confidence            467889999999999997421                      123556678999999997 899999999999999999


Q ss_pred             CeEEEEE------ecCCCCcEEEEEccCCCCEEEEEeCCCc---EEEEECCCCeEEEEe--------------cCCCCeE
Q 004785          139 GSCLKVL------HGHRRTPWVVRFHPLNPTIIASGSLDHE---VRLWNASTAECIGSR--------------DFYRPIA  195 (730)
Q Consensus       139 g~~l~~l------~gH~~~V~sVafSP~dg~lLaSgS~Dgt---VrLWDl~tg~~i~~l--------------~h~~~V~  195 (730)
                      ++.+..+      .+|...|.+++|+| ++++|++|+.|++   |++||+.+++.+..+              +|...|+
T Consensus       215 ~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~  293 (393)
T d1sq9a_         215 LRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM  293 (393)
T ss_dssp             TEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred             cccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence            9887655      46899999999999 9999999999975   899999999887765              4888999


Q ss_pred             EEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEecCCCCeE----EEEEccCCCeEEEEEeeCCc
Q 004785          196 SIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLRTRRSLR----AVHFHPHAAPLLLTAEVNDL  259 (730)
Q Consensus       196 sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~h~~~V~----sVaFSPdG~~Llatgsvwdl  259 (730)
                      +++|+|||++|++++. +.|+|||+.+++.+.   .+.+|...|.    .++|++++..++ ++.+|++
T Consensus       294 ~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~---~l~gH~~~v~~~~~~~~~~~~~~~~~-~~~~~~~  358 (393)
T d1sq9a_         294 SLSFNDSGETLCSAGWDGKLRFWDVKTKERIT---TLNMHCDDIEIEEDILAVDEHGDSLA-EPGVFDV  358 (393)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCGGGCSSGGGCCCBCTTSCBCS-SCCEEEE
T ss_pred             eeccCCCCCeeEEECCCCEEEEEECCCCCEEE---EECCcCCcccCCccEEEECCCCCEEE-EcccceE
Confidence            9999999999999995 459999999998654   6788987775    588999998654 3344443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=3.6e-19  Score=179.40  Aligned_cols=195  Identities=15%  Similarity=0.143  Sum_probs=141.3

Q ss_pred             CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-ecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECC
Q 004785          102 PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL-HGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNAS  180 (730)
Q Consensus       102 ~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l-~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~  180 (730)
                      .+.||.+.|++++|+|||++|++|+.|++|++||+++++.++.+ .+|...|.+++|+| ++. +++++.|+.+++|++.
T Consensus         7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEECSS
T ss_pred             EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEeccC
Confidence            46799999999999999999999999999999999999988887 47999999999999 666 5567789999999975


Q ss_pred             CCeE---------------------------------EE--------EecCCCCeEEEEEcCCCCEEEEEECC-eEEEEE
Q 004785          181 TAEC---------------------------------IG--------SRDFYRPIASIAFHASGELLAVASGH-KLYIWR  218 (730)
Q Consensus       181 tg~~---------------------------------i~--------~l~h~~~V~sVafSPdG~~LAsgSdd-~I~VWD  218 (730)
                      ....                                 +.        .......+.+++|+|++++|++++.+ .|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3210                                 00        01123457789999999999999854 599999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccc
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEE  298 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~  298 (730)
                      +++.+...  .....|...|.+++|+|+++++++++...                       .+.+|+............
T Consensus       165 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------------------~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         165 LSGASVSE--VKTIVHPAEITSVAFSNNGAFLVATDQSR-----------------------KVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EETTEEEE--EEEEECSSCEEEEEECTTSSEEEEEETTS-----------------------CEEEEEGGGTTEESCCCC
T ss_pred             cccccccc--ccccccccccccccccccccccccccccc-----------------------cccccccccccccccccc
Confidence            98776422  34567889999999999999887765411                       122222222111111111


Q ss_pred             cCCCCCCceeeeEecCCCEEEEEec
Q 004785          299 VPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       299 ~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                      ......++...+|+||++.|+....
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~  244 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSL  244 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccceEEEcC
Confidence            1222345667899999999887443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=8.8e-19  Score=181.85  Aligned_cols=182  Identities=13%  Similarity=0.129  Sum_probs=147.9

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC------------CCCCCCCCeEEEEECCCCCEEEEEeC--CCeEEEEECCCCeEEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC------------PLSPPPRSTIAAAFSPDGKTLASTHG--DHTVKIIDCQTGSCLKV  144 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~------------~L~gH~~~Vt~lafSPDG~~LaSgS~--DgtVrVWDl~tg~~l~~  144 (730)
                      .++..|++++.|++|++||....            .+..|.+.|.+++|++++++|++++.  ++.+++|+..+++.+..
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  154 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE  154 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccccee
Confidence            46678999999999999998643            23468899999999999999988765  67899999999999999


Q ss_pred             EecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe----cCCCCeEEEEEcCC-CCEEEEEEC-CeEEEEE
Q 004785          145 LHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR----DFYRPIASIAFHAS-GELLAVASG-HKLYIWR  218 (730)
Q Consensus       145 l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l----~h~~~V~sVafSPd-G~~LAsgSd-d~I~VWD  218 (730)
                      +.+|...|.+++|+|++..++++++.|+.|++||+..++.....    .+...|.+++|+|+ +++|++++. +.|++||
T Consensus       155 ~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd  234 (325)
T d1pgua1         155 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  234 (325)
T ss_dssp             CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             eeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence            99999999999999955567889999999999999988766654    35678999999997 678898885 5599999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEc---cCCCeEEEEEe-----eCCccCCC
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFH---PHAAPLLLTAE-----VNDLDSSE  263 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFS---PdG~~Llatgs-----vwdl~s~~  263 (730)
                      +++++...   .+..|...+..+.|+   |||++|++++.     +|++..++
T Consensus       235 ~~~~~~~~---~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         235 GKSGEFLK---YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             TTTCCEEE---ECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             eccccccc---cccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence            99887644   556677766665555   68887777654     56555443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=6.8e-18  Score=169.99  Aligned_cols=170  Identities=19%  Similarity=0.213  Sum_probs=144.4

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      ..+..++.+..|+.|++||..++    ...++...+.++.|++++.++++++.|+.|++||+.++..+..+++|...|.+
T Consensus       169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~  248 (355)
T d1nexb2         169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL  248 (355)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE
T ss_pred             cccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccc
Confidence            35678899999999999999876    35678889999999999999999999999999999999999999999999999


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecC
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRT  234 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h  234 (730)
                      ++|++   +++++++.|++|++||++++.......+........|++++++|++|+|+.|+|||+++++.+.  ..+.+|
T Consensus       249 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~--~~~~~~  323 (355)
T d1nexb2         249 LRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH--ANILKD  323 (355)
T ss_dssp             EEECS---SEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC--SCTTTT
T ss_pred             ccccc---ceeeeeecccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE--EEecCC
Confidence            99965   7999999999999999998877655544444444567889999999999999999999987643  235678


Q ss_pred             CCCeEEEEEccCCCeEEEEEe
Q 004785          235 RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       235 ~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...|.+++|+|+  .++++++
T Consensus       324 ~~~V~~v~~~~~--~~~~~~s  342 (355)
T d1nexb2         324 ADQIWSVNFKGK--TLVAAVE  342 (355)
T ss_dssp             CSEEEEEEEETT--EEEEEEE
T ss_pred             CCCEEEEEEcCC--eEEEEEE
Confidence            899999999986  3555544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.3e-17  Score=163.12  Aligned_cols=223  Identities=16%  Similarity=0.242  Sum_probs=148.5

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCe---------------
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGS---------------  140 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~---------------  140 (730)
                      .++.|++++.|++|++||..++    .+.+|...|.+++|+++  +|++++.|+++++|+.....               
T Consensus        26 ~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (342)
T d2ovrb2          26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM  103 (342)
T ss_dssp             ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeee
Confidence            4678999999999999999887    47899999999999864  89999999888888864321               


Q ss_pred             -----------------------------------------------------------------EEEEEecCCCCcEEE
Q 004785          141 -----------------------------------------------------------------CLKVLHGHRRTPWVV  155 (730)
Q Consensus       141 -----------------------------------------------------------------~l~~l~gH~~~V~sV  155 (730)
                                                                                       .+..+.+|...+.  
T Consensus       104 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--  181 (342)
T d2ovrb2         104 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--  181 (342)
T ss_dssp             EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--
T ss_pred             ecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccc--
Confidence                                                                             1122223433333  


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      .+++ ++.++++++.|++|++||++.++.+..+. |...+.+++++  +++|++++.+ .|++||+...+..........
T Consensus       182 ~~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  258 (342)
T d2ovrb2         182 SLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK  258 (342)
T ss_dssp             EEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred             cccC-CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccce
Confidence            3344 67899999999999999999999887764 67788877775  5689999855 599999988765431111223


Q ss_pred             CCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCcee
Q 004785          234 TRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLR  308 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~  308 (730)
                      |...+.++.|+  ++++++++.     +|++.+++....+...                          .......+++.
T Consensus       259 ~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~--------------------------~~~~~~~~v~~  310 (342)
T d2ovrb2         259 HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTL--------------------------ESGGSGGVVWR  310 (342)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEEC--------------------------TTGGGTCEEEE
T ss_pred             eeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecc--------------------------cCCCCCCCEEE
Confidence            55667777765  455665543     4444433322222110                          00112334667


Q ss_pred             eeEecCCCEEEEEecCCCCCcccceeecC
Q 004785          309 PSFVRDDERISLQHTEHDSGATRTQQSLR  337 (730)
Q Consensus       309 p~FSpDg~rI~~~~~~~dsgs~~~~~~~~  337 (730)
                      ++|+||+..++....+.....-+..+|++
T Consensus       311 v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         311 IRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            89999988777654443333344444443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=5.8e-18  Score=179.73  Aligned_cols=187  Identities=17%  Similarity=0.095  Sum_probs=141.6

Q ss_pred             CEEEEEeCCCeEEEEeCCCC--------------CCCCCCCCeEEEEECCC-----CCEEEEEeCCCeEEEEECCCCe--
Q 004785           82 RGLASWVEAESLHHLRPKYC--------------PLSPPPRSTIAAAFSPD-----GKTLASTHGDHTVKIIDCQTGS--  140 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~--------------~L~gH~~~Vt~lafSPD-----G~~LaSgS~DgtVrVWDl~tg~--  140 (730)
                      ..+++++.|++|++|+....              ....+...+..++|.++     +.++++++.|++|++||+....  
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            45778999999999986532              11235566888888875     4688999999999999974220  


Q ss_pred             -------------EEE---EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------cCCCCeEEE
Q 004785          141 -------------CLK---VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-------DFYRPIASI  197 (730)
Q Consensus       141 -------------~l~---~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-------~h~~~V~sV  197 (730)
                                   ...   ....+...+.+++|+| ++ +|++|+.|++|+|||+.+++.+..+       .|...|.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l  237 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  237 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence                         011   1124556789999999 55 8899999999999999999887653       377899999


Q ss_pred             EEcCCCCEEEEEECCe----EEEEEcCCCccccC----------CeEEecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004785          198 AFHASGELLAVASGHK----LYIWRYNMREETSS----------PRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND  258 (730)
Q Consensus       198 afSPdG~~LAsgSdd~----I~VWDl~t~~~~~~----------~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwd  258 (730)
                      +|+|||++|++|++++    |++||+.+++....          .....+|...|++++|+||+++|++++.     +||
T Consensus       238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            9999999999998542    99999998765331          1123479999999999999998877664     888


Q ss_pred             ccCCCcceeEec
Q 004785          259 LDSSESSLTLAT  270 (730)
Q Consensus       259 l~s~~~~~~l~t  270 (730)
                      +..++...++..
T Consensus       318 ~~~g~~~~~l~g  329 (393)
T d1sq9a_         318 VKTKERITTLNM  329 (393)
T ss_dssp             TTTTEEEEEEEC
T ss_pred             CCCCCEEEEECC
Confidence            887765555543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.1e-16  Score=158.88  Aligned_cols=188  Identities=16%  Similarity=0.211  Sum_probs=141.1

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCC--cE
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRT--PW  153 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~--V~  153 (730)
                      ++..|++|+.|++|++||..++    ++.+|.+.|++++|+++ .+|++|+.|++|++|+....+.......+...  ..
T Consensus        22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~  100 (355)
T d1nexb2          22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL  100 (355)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccc
Confidence            4679999999999999999886    47899999999999985 58999999999999999999887766544443  34


Q ss_pred             EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC----------------------CCCeEEEEEcCCCCEEEEEEC
Q 004785          154 VVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF----------------------YRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h----------------------~~~V~sVafSPdG~~LAsgSd  211 (730)
                      ...+++ ++.++++++.|+.|++||+.+.........                      ........+.+++++++++..
T Consensus       101 ~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (355)
T d1nexb2         101 DIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY  179 (355)
T ss_dssp             EEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEET
T ss_pred             cccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecc
Confidence            566677 888999999999999999987654332110                      001122345678899999985


Q ss_pred             Ce-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcceeEeccC
Q 004785          212 HK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESSLTLATSP  272 (730)
Q Consensus       212 d~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~~~l~t~s  272 (730)
                      +. |++||+++++...   ....+...+.++.|++++.++++++.     +|++..+.....+..+.
T Consensus       180 d~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~  243 (355)
T d1nexb2         180 DNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT  243 (355)
T ss_dssp             TSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             cceeeeeeccccccee---eeeccccccccccccccceeeecccccceEEeeecccccccccccccc
Confidence            54 9999999887543   56677888999999999998877654     67777666555554433

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=7.2e-17  Score=167.22  Aligned_cols=174  Identities=10%  Similarity=0.047  Sum_probs=131.6

Q ss_pred             ecCCCEEEEEeC--CCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEECCCCeEEEEE---ec
Q 004785           78 RDARRGLASWVE--AESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKT-LASTHGDHTVKIIDCQTGSCLKVL---HG  147 (730)
Q Consensus        78 ~d~g~~L~Sgs~--DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~-LaSgS~DgtVrVWDl~tg~~l~~l---~g  147 (730)
                      ..++..|++++.  ++.+++|+.+++    .+.+|...|.+++|+|++.+ +++++.|+.|++||..+++....+   ..
T Consensus       124 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~  203 (325)
T d1pgua1         124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK  203 (325)
T ss_dssp             CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC
T ss_pred             CCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccC
Confidence            345666666554  667899998765    47889999999999998875 678999999999999988876665   45


Q ss_pred             CCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEc---CCCCEEEEEECC-eEEEEEcCCC
Q 004785          148 HRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFH---ASGELLAVASGH-KLYIWRYNMR  222 (730)
Q Consensus       148 H~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafS---PdG~~LAsgSdd-~I~VWDl~t~  222 (730)
                      |...|.+++|+|+.+.++++++.|+.|++||+++++.+..+. |...+.++.|+   |||++|++++.+ .|+|||++++
T Consensus       204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence            677899999999668999999999999999999999988865 55555555554   689999999854 5999999988


Q ss_pred             ccccCCeEEecC--CCCeEEEEEccCCC-eEEEEE
Q 004785          223 EETSSPRIVLRT--RRSLRAVHFHPHAA-PLLLTA  254 (730)
Q Consensus       223 ~~~~~~~~l~~h--~~~V~sVaFSPdG~-~Llatg  254 (730)
                      +.+.   .+..|  ...+..++|.+.+. ++++++
T Consensus       284 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~s  315 (325)
T d1pgua1         284 KCVQ---KWTLDKQQLGNQQVGVVATGNGRIISLS  315 (325)
T ss_dssp             EEEE---EEECCTTCGGGCEEEEEEEETTEEEEEE
T ss_pred             CEEE---EEEecCCcccCeEEEEEECCCCEEEEEE
Confidence            7644   33333  33344444444332 455444

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=7.7e-17  Score=164.40  Aligned_cols=189  Identities=13%  Similarity=0.098  Sum_probs=142.6

Q ss_pred             EEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--cEEEEECCCCeEEEE
Q 004785          111 IAAAFSP-DGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--EVRLWNASTAECIGS  187 (730)
Q Consensus       111 t~lafSP-DG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg--tVrLWDl~tg~~i~~  187 (730)
                      ..-.||| ||+++|+++. +.|++||+.++..++ + +|...|.+++|+| ++++|++++.|.  .|++||+.+++....
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~-~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V-PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C-SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c-cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            3567999 9999999875 699999998887655 3 6999999999999 888887766553  799999999998888


Q ss_pred             ecCCCCeEEEEEcCCCCEEEEEECCe-EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCCccCCCcce
Q 004785          188 RDFYRPIASIAFHASGELLAVASGHK-LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSL  266 (730)
Q Consensus       188 l~h~~~V~sVafSPdG~~LAsgSdd~-I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~  266 (730)
                      ..|...|.+++|+|||++|++++.+. +++|++.+++...   ....+...+.+++|+|||++|+.+..........   
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~---  155 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNSRFIAYGFPLKHGETDG---  155 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS---
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccceee---eeecccccccchhhccceeeeeeeccccccceee---
Confidence            88999999999999999999999655 9999998887543   5667888899999999999888766533222110   


Q ss_pred             eEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEec
Q 004785          267 TLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHT  323 (730)
Q Consensus       267 ~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~  323 (730)
                                .....+.+++........+..    .......+.|++||++|++...
T Consensus       156 ----------~~~~~~~v~d~~~~~~~~~~~----~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         156 ----------YVMQAIHVYDMEGRKIFAATT----ENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             ----------CCEEEEEEEETTTTEEEECSC----SSSBEEEEEECTTSCEEEEEES
T ss_pred             ----------ccccceeeeccccCceeeecc----cccccccccccCCCCEEEEEeC
Confidence                      011235556644433222211    1233457899999999997543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-16  Score=158.90  Aligned_cols=169  Identities=17%  Similarity=0.294  Sum_probs=136.0

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWV  154 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~s  154 (730)
                      .....++.+..|+.|++||....    .+.+|...+..+.+  ++.+|++++.|+.|++||++.++.+..+.+|...+.+
T Consensus       145 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~  222 (342)
T d2ovrb2         145 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG  222 (342)
T ss_dssp             ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred             cccceeeeecCCCeEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeE
Confidence            45667888999999999998765    46788877776665  6889999999999999999999999999999999998


Q ss_pred             EEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec----CCCCeEEEEEcCCCCEEEEEECC-eEEEEEcCCCccccCCe
Q 004785          155 VRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD----FYRPIASIAFHASGELLAVASGH-KLYIWRYNMREETSSPR  229 (730)
Q Consensus       155 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~----h~~~V~sVafSPdG~~LAsgSdd-~I~VWDl~t~~~~~~~~  229 (730)
                      +.+++   +++++++.|+.|++||+...+....+.    |...+.++.|+  ++++++++++ .|+|||+++++.+....
T Consensus       223 ~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         223 MELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            88865   699999999999999999988776653    44566666664  6789999855 59999999987654211


Q ss_pred             E--EecCCCCeEEEEEccCCCeEEEEE
Q 004785          230 I--VLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       230 ~--l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .  ..+|...|++++|+|++..+++++
T Consensus       298 ~~~~~~~~~~v~~v~~s~~~~~la~g~  324 (342)
T d2ovrb2         298 TLESGGSGGVVWRIRASNTKLVCAVGS  324 (342)
T ss_dssp             ECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred             cccCCCCCCCEEEEEECCCCCEEEEEe
Confidence            1  124677899999999997554443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=1.1e-16  Score=163.25  Aligned_cols=169  Identities=11%  Similarity=-0.002  Sum_probs=140.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC--CCCCCCCeEEEEECCCCCEEEEEeCCC--eEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP--LSPPPRSTIAAAFSPDGKTLASTHGDH--TVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~--L~gH~~~Vt~lafSPDG~~LaSgS~Dg--tVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      +|+.++.++ ++.|.+||.+.+.  ..+|...|.+++|+|||++|++++.+.  .|++||.++++ ++.+..|...|.++
T Consensus        14 dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-~~~~~~~~~~v~~~   91 (360)
T d1k32a3          14 DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-AEKFEENLGNVFAM   91 (360)
T ss_dssp             GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-EEECCCCCCSEEEE
T ss_pred             CCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-EEEeeCCCceEEee
Confidence            456666654 5799999998773  347999999999999999998877653  79999998876 45677899999999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-----------CeEEEEEcCCCc
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-----------HKLYIWRYNMRE  223 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-----------d~I~VWDl~t~~  223 (730)
                      +|+| +++++++++.++.+++||+.+++....+. +...+.+++|+|||++|+.+..           ..+++||+.+++
T Consensus        92 ~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~  170 (360)
T d1k32a3          92 GVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  170 (360)
T ss_dssp             EECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             eecc-cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc
Confidence            9999 99999999999999999999998877764 6778899999999999987641           128999998876


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..    .+..+...+..+.|+|||++|++.+.
T Consensus       171 ~~----~~~~~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         171 IF----AATTENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             EE----ECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             ee----eecccccccccccccCCCCEEEEEeC
Confidence            43    35567778899999999998887664

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.7e-16  Score=153.60  Aligned_cols=167  Identities=16%  Similarity=0.333  Sum_probs=110.9

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC----------------
Q 004785           80 ARRGLASWVEAESLHHLRPKYC----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG----------------  139 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg----------------  139 (730)
                      ++..|++|+.|++|++||..++    .+.+|.+.|++++|  ++++|++|+.|+.|++|++..+                
T Consensus        24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~  101 (293)
T d1p22a2          24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL  101 (293)
T ss_dssp             CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred             cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccc
Confidence            4677888888888888888765    36778888888776  5678888888888888887443                


Q ss_pred             -------------------------------------------------------------------eEEEEEecCCCCc
Q 004785          140 -------------------------------------------------------------------SCLKVLHGHRRTP  152 (730)
Q Consensus       140 -------------------------------------------------------------------~~l~~l~gH~~~V  152 (730)
                                                                                         +.+..+.+|...+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v  181 (293)
T d1p22a2         102 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI  181 (293)
T ss_dssp             ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccccc
Confidence                                                                               2222223333333


Q ss_pred             EEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccc-----
Q 004785          153 WVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREET-----  225 (730)
Q Consensus       153 ~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~-----  225 (730)
                      ..+.+   ++..+++++.|++|++||+++.+.+.... +...+.  .+++++.+|++++. +.|++||+......     
T Consensus       182 ~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  256 (293)
T d1p22a2         182 ACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG  256 (293)
T ss_dssp             EEEEE---ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred             ccccC---CCCeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEEEEEcCCCEEEEEECCCCccccccCC
Confidence            33333   23577778888888888888777766654 444444  35667888888885 44999997543221     


Q ss_pred             -cCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          226 -SSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       226 -~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                       .....+.+|...|++++|+  +++|++++.
T Consensus       257 ~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~  285 (293)
T d1p22a2         257 TLCLRTLVEHSGRVFRLQFD--EFQIVSSSH  285 (293)
T ss_dssp             TTEEEEECCCSSCCCCEEEC--SSCEEECCS
T ss_pred             ceeeEEecCCCCCEEEEEEc--CCEEEEEec
Confidence             1123566788999999984  566665543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.8e-16  Score=157.70  Aligned_cols=147  Identities=8%  Similarity=-0.043  Sum_probs=105.9

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCC-------CCCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYCP-------LSPPPRSTIAAAFSPD-GKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~~-------L~gH~~~Vt~lafSPD-G~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      +....+..|++++.|++|++||+....       ..+|...|.+++|+++ +.+|++|+.|+.|++|+...+........
T Consensus        18 ~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~   97 (342)
T d1yfqa_          18 KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN   97 (342)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBS
T ss_pred             EEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccc
Confidence            334567899999999999999986541       2369999999999986 56899999999999999998887777766


Q ss_pred             CCCCcE-EEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE----Eec---CCCCeEEEEEcCCCCEEEEEEC-CeEEEEE
Q 004785          148 HRRTPW-VVRFHPLNPTIIASGSLDHEVRLWNASTAECIG----SRD---FYRPIASIAFHASGELLAVASG-HKLYIWR  218 (730)
Q Consensus       148 H~~~V~-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~----~l~---h~~~V~sVafSPdG~~LAsgSd-d~I~VWD  218 (730)
                      +...+. ...+.+ +...+++++.|+++++||++++....    ...   .........+.+++..+++++. +.|++||
T Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  176 (342)
T d1yfqa_          98 NEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR  176 (342)
T ss_dssp             CCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEE
T ss_pred             ccccccccccccc-ccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEe
Confidence            655554 444555 88999999999999999986532211    111   1223344556666666666663 3377777


Q ss_pred             cCCCc
Q 004785          219 YNMRE  223 (730)
Q Consensus       219 l~t~~  223 (730)
                      ++...
T Consensus       177 ~~~~~  181 (342)
T d1yfqa_         177 LPLCE  181 (342)
T ss_dssp             SSCCT
T ss_pred             cccCc
Confidence            65544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.69  E-value=7.1e-15  Score=146.07  Aligned_cols=166  Identities=14%  Similarity=0.229  Sum_probs=135.4

Q ss_pred             EEEeCCCeEEEEeCCCCCCC---CCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccC
Q 004785           85 ASWVEAESLHHLRPKYCPLS---PPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPL  160 (730)
Q Consensus        85 ~Sgs~DgsIrlWd~~t~~L~---gH~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~  160 (730)
                      ++...|++|.+||.+++++.   .....+..++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +..++|+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccc
Confidence            46678999999999987432   2335578999999999875 566789999999999999999987764 788999994


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEEecCCCCe
Q 004785          161 NPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       161 dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      +..+++++..++.+.+||..+++....+.+......+.|+|+|+.++....  ..+.+|+..+.....    ...+...+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  160 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN----TVSVGRSP  160 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE----EEECCSSE
T ss_pred             cccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceee----ecccCCCc
Confidence            445666777888999999999999999888888999999999998877763  449999998887543    34455678


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004785          239 RAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgs  255 (730)
                      ..+.|+|++++++++..
T Consensus       161 ~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             eEEEeeccccceeeecc
Confidence            99999999998877654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=5.2e-16  Score=155.31  Aligned_cols=139  Identities=12%  Similarity=0.177  Sum_probs=113.2

Q ss_pred             CCCEEEEEeCC-CeEEEEeCCCC-----CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE-EEecCCCCc
Q 004785           80 ARRGLASWVEA-ESLHHLRPKYC-----PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLK-VLHGHRRTP  152 (730)
Q Consensus        80 ~g~~L~Sgs~D-gsIrlWd~~t~-----~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~-~l~gH~~~V  152 (730)
                      .+..++.+..+ +.|++|+....     ....|...+++++|+|++++|++|+.|+.|++||+.+++... .+.+|...|
T Consensus       129 ~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         129 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence            45556655555 57999998643     234678899999999999999999999999999999988664 467899999


Q ss_pred             EEEEEccC---------CCCEEEEEeCCCcEEEEECCC-CeEEEEe-cCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEc
Q 004785          153 WVVRFHPL---------NPTIIASGSLDHEVRLWNAST-AECIGSR-DFYRPIASIAFHASGELLAVAS-GHKLYIWRY  219 (730)
Q Consensus       153 ~sVafSP~---------dg~lLaSgS~DgtVrLWDl~t-g~~i~~l-~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl  219 (730)
                      .+++|+|.         ++.++++|+.|++|++||+++ ++.+..+ .|...|.+++|+|+++ |++++ |+.|++||+
T Consensus       209 ~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         209 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             ceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            99999982         356899999999999999987 4455554 5899999999999876 55555 566999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=6.1e-16  Score=153.80  Aligned_cols=162  Identities=10%  Similarity=-0.028  Sum_probs=118.9

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---EEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEEC
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL---KVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNA  179 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l---~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl  179 (730)
                      +.+|.+.|++|+|+|++++|++|+.|++|+|||+.++...   ....+|.+.|.+++|+|+++.++++|+.|++|++||+
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            5689999999999999999999999999999999765432   3334799999999999956779999999999999999


Q ss_pred             CCCeEEEEec--CCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeE-Eec--CCCCeEEEEEccCCCeEEEE
Q 004785          180 STAECIGSRD--FYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRI-VLR--TRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       180 ~tg~~i~~l~--h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~-l~~--h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..+.......  +........+.+++..+++++. +.+++||++.......... ...  .......+.+.+++..++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (342)
T d1yfqa_          87 IGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG  166 (342)
T ss_dssp             SSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeee
Confidence            9877666543  3334455667778888888885 4599999976543221111 111  12344566777888877765


Q ss_pred             Ee-----eCCccCCCc
Q 004785          254 AE-----VNDLDSSES  264 (730)
Q Consensus       254 gs-----vwdl~s~~~  264 (730)
                      +.     +|++.....
T Consensus       167 ~~d~~i~~~~~~~~~~  182 (342)
T d1yfqa_         167 MNNSQVQWFRLPLCED  182 (342)
T ss_dssp             ESTTEEEEEESSCCTT
T ss_pred             cCCCcEEEEecccCcc
Confidence            54     666654443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=3.7e-15  Score=148.99  Aligned_cols=169  Identities=15%  Similarity=0.162  Sum_probs=126.7

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCC-C--CCCCCeEEEEECCCCCEEEEEeCCC-eEEEEECCCCeEEEEEe-cCCCCcEEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCPL-S--PPPRSTIAAAFSPDGKTLASTHGDH-TVKIIDCQTGSCLKVLH-GHRRTPWVV  155 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L-~--gH~~~Vt~lafSPDG~~LaSgS~Dg-tVrVWDl~tg~~l~~l~-gH~~~V~sV  155 (730)
                      ...++....++.+.+|+...+.. .  .+...  ..++++++..+++++.|+ .|++|++.+.+....+. .|.+.++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~  168 (287)
T d1pgua2          91 DGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  168 (287)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEEEECSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             CCceEEEeecccceeeeccceeeeeeccccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE
Confidence            34444455666777887766531 1  12222  345667788888887764 79999998776665554 477889999


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEE--ecCCCCeEEEEEcCC----------CCEEEEEECC-eEEEEEcCCC
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGS--RDFYRPIASIAFHAS----------GELLAVASGH-KLYIWRYNMR  222 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~--l~h~~~V~sVafSPd----------G~~LAsgSdd-~I~VWDl~t~  222 (730)
                      +|+| ++.+|++++.|+.|++||+.+++.+..  ..|...|.+++|+|+          +.+|++|+.+ .|+|||+++.
T Consensus       169 ~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~  247 (287)
T d1pgua2         169 SISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP  247 (287)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             Eecc-CccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence            9999 999999999999999999999887654  357889999999875          4689999854 5999999775


Q ss_pred             ccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          223 EETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       223 ~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ...  ...+.+|...|++++|+|++. +++++.
T Consensus       248 ~~~--~~~~~~h~~~V~~v~~~~~~~-l~s~g~  277 (287)
T d1pgua2         248 MKI--IKALNAHKDGVNNLLWETPST-LVSSGA  277 (287)
T ss_dssp             TCC--EEETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred             CeE--EEEeCCCCCCeEEEEECCCCE-EEEEEC
Confidence            431  234567999999999999875 666654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=8.4e-15  Score=157.36  Aligned_cols=169  Identities=12%  Similarity=0.023  Sum_probs=129.1

Q ss_pred             EEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEE--E---ecCCCCcE
Q 004785           83 GLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKV--L---HGHRRTPW  153 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~--l---~gH~~~V~  153 (730)
                      .+++...|++|++||..+++    +..| ..+..++|||||++|++++.|++|++||+.+++....  +   .+|.+.+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            45778899999999999874    4455 4699999999999999999999999999999875433  2   35666677


Q ss_pred             EEEEccCCCCEE-EEEeCCCcEEEEECCCCeEEEEec------------CCCCeEEEEEcCCCCEEEEEECC--eEEEEE
Q 004785          154 VVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLAVASGH--KLYIWR  218 (730)
Q Consensus       154 sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~------------h~~~V~sVafSPdG~~LAsgSdd--~I~VWD  218 (730)
                      +++|+| +++++ +++..++++++||..+++.+....            +......+.+++++..++....+  .+.+++
T Consensus       113 s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~  191 (426)
T d1hzua2         113 SKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  191 (426)
T ss_dssp             CCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             eeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            788889 66655 566689999999999998776542            33455677888888877777643  377777


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ........  .....+...+..+.|+|++++++++..
T Consensus       192 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         192 YKDIDNLT--VTSIGAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             CSSSSSCE--EEEEECCSSEEEEEECTTSCEEEEEET
T ss_pred             ecccccee--eEEeccCCccEeeeECCCCcEEEeeee
Confidence            66554322  345567888999999999998887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-14  Score=139.31  Aligned_cols=159  Identities=20%  Similarity=0.378  Sum_probs=121.1

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA  182 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg  182 (730)
                      +.+|...|+|+.|  ||++|++|+.|++|+|||+.+++++..+++|.+.|.+++|   ++++|++|+.|++|++|++..+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec---ccceeecccccccccccccccc
Confidence            4568889999765  7999999999999999999999999999999999999987   4589999999999999999999


Q ss_pred             eEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----e
Q 004785          183 ECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----V  256 (730)
Q Consensus       183 ~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----v  256 (730)
                      ............. ..+.+....++++. ++.+++||...............|...|..+.+.++.  +++.+.     +
T Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~d~~i~~  162 (293)
T d1p22a2          86 EMLNTLIHHCEAV-LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKV  162 (293)
T ss_dssp             CEEEEECCCCSCE-EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE--EEEEETTSEEEE
T ss_pred             ccccccccccccc-ccccccccceeecccccceeEeeccccccccccccccccccccccceecccc--cccccCCCceee
Confidence            8877765444433 33445556666666 4559999998876544344566778888888776543  444332     6


Q ss_pred             CCccCCCcceeEe
Q 004785          257 NDLDSSESSLTLA  269 (730)
Q Consensus       257 wdl~s~~~~~~l~  269 (730)
                      |++...+....+.
T Consensus       163 ~d~~~~~~~~~~~  175 (293)
T d1p22a2         163 WNTSTCEFVRTLN  175 (293)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             ecCCCCcEEEEEc
Confidence            7776665544443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=2.6e-14  Score=143.68  Aligned_cols=140  Identities=14%  Similarity=0.153  Sum_probs=115.9

Q ss_pred             CEEEEEeCCCeEEEEeCCCCC------CCCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCCC----
Q 004785           82 RGLASWVEAESLHHLRPKYCP------LSPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHRR----  150 (730)
Q Consensus        82 ~~L~Sgs~DgsIrlWd~~t~~------L~gH~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~~----  150 (730)
                      ..+++++.|++|++||.++++      +..+...+.+++|+|||++|+ +++.++.|++||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            578999999999999999873      234556688999999999875 566799999999999999988876543    


Q ss_pred             -CcEEEEEccCCCCEEEEEe------------CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEE
Q 004785          151 -TPWVVRFHPLNPTIIASGS------------LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIW  217 (730)
Q Consensus       151 -~V~sVafSP~dg~lLaSgS------------~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VW  217 (730)
                       .+..++|+| +++.++.+.            .+..+.+||..+++.+..+.....+..++|+|||+++++++ +.+.+|
T Consensus        82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-RDLHVM  159 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES-SSEEEE
T ss_pred             cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc-CCccee
Confidence             456799999 777777665            46789999999999999888888899999999999998875 347788


Q ss_pred             EcCCCc
Q 004785          218 RYNMRE  223 (730)
Q Consensus       218 Dl~t~~  223 (730)
                      |..+++
T Consensus       160 d~~~~~  165 (337)
T d1pbyb_         160 DPEAGT  165 (337)
T ss_dssp             ETTTTE
T ss_pred             eeecCc
Confidence            887654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=1.1e-14  Score=158.43  Aligned_cols=169  Identities=13%  Similarity=0.027  Sum_probs=132.7

Q ss_pred             EEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeE--EEEE---ecCCCCcE
Q 004785           83 GLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSC--LKVL---HGHRRTPW  153 (730)
Q Consensus        83 ~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~--l~~l---~gH~~~V~  153 (730)
                      .+++.+.+++|.+||.++++    +..| ..+..++|||||++|++++.|++|++||+.+++.  +..+   .+|.+.+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            35788899999999999874    4445 3699999999999999999999999999988763  3333   35666666


Q ss_pred             EEEEccCCCCE-EEEEeCCCcEEEEECCCCeEEEEec------------CCCCeEEEEEcCCCCEEEEEE--CCeEEEEE
Q 004785          154 VVRFHPLNPTI-IASGSLDHEVRLWNASTAECIGSRD------------FYRPIASIAFHASGELLAVAS--GHKLYIWR  218 (730)
Q Consensus       154 sVafSP~dg~l-LaSgS~DgtVrLWDl~tg~~i~~l~------------h~~~V~sVafSPdG~~LAsgS--dd~I~VWD  218 (730)
                      +..|+| ++++ +++++.+++|++||..+++.+..+.            +......+.++|+|..+++..  ++.|.+||
T Consensus       113 s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d  191 (432)
T d1qksa2         113 SKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVD  191 (432)
T ss_dssp             CCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             ecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEE
Confidence            677888 6665 5788899999999999998876642            345677899999999877665  34599999


Q ss_pred             cCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          219 YNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       219 l~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..+.+...  .....+...+..+.|+|||+++++++.
T Consensus       192 ~~~~~~~~--~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         192 YTDLNNLK--TTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             TTCSSEEE--EEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             ccCCCcce--EEEEcccCccccceECCCCCEEEEecc
Confidence            98776432  233456678899999999998888764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.54  E-value=2.9e-13  Score=136.39  Aligned_cols=194  Identities=12%  Similarity=0.046  Sum_probs=135.7

Q ss_pred             ecCCCEEEEEeCCCeEEEEeCCCCCC-----CCCCCCeEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEEecCC--
Q 004785           78 RDARRGLASWVEAESLHHLRPKYCPL-----SPPPRSTIAAAFSPDGKTLA-STHGDHTVKIIDCQTGSCLKVLHGHR--  149 (730)
Q Consensus        78 ~d~g~~L~Sgs~DgsIrlWd~~t~~L-----~gH~~~Vt~lafSPDG~~La-SgS~DgtVrVWDl~tg~~l~~l~gH~--  149 (730)
                      +.+++.+++++.+++|.+||++++++     ..|...+.+++|+|||++|+ ++..++.|++||+.+++.+..+....  
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~   84 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   84 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccc
Confidence            45788999999999999999998853     24566788999999999875 45578999999999999887775332  


Q ss_pred             ----CCcEEEEEccCCCCEEEEEe------------CCCcEE--------------------------------------
Q 004785          150 ----RTPWVVRFHPLNPTIIASGS------------LDHEVR--------------------------------------  175 (730)
Q Consensus       150 ----~~V~sVafSP~dg~lLaSgS------------~DgtVr--------------------------------------  175 (730)
                          ..+..++|+| ++++++.++            .+..+.                                      
T Consensus        85 ~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (346)
T d1jmxb_          85 GEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP  163 (346)
T ss_dssp             TEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS
T ss_pred             cccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCC
Confidence                2355688888 655554432            233333                                      


Q ss_pred             ---EEECCCCeEEEEe----------------------------------------------------------------
Q 004785          176 ---LWNASTAECIGSR----------------------------------------------------------------  188 (730)
Q Consensus       176 ---LWDl~tg~~i~~l----------------------------------------------------------------  188 (730)
                         +||+.+++.+..+                                                                
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1jmxb_         164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH  243 (346)
T ss_dssp             SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred             cceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE
Confidence               3444333322211                                                                


Q ss_pred             -----cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCC
Q 004785          189 -----DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VND  258 (730)
Q Consensus       189 -----~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwd  258 (730)
                           .+...+..+.+++++.+++....+.|++||+.+++...    ...+...+.+++|+|||+++++++.     +||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~----~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D  319 (346)
T d1jmxb_         244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK----AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN  319 (346)
T ss_dssp             EEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEE----EEECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred             EEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEE----EEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence                 12223445677778777777777889999998887543    3344567999999999998888654     777


Q ss_pred             ccCCCcceeEeccCCccc
Q 004785          259 LDSSESSLTLATSPGYWR  276 (730)
Q Consensus       259 l~s~~~~~~l~t~sG~~~  276 (730)
                      ..+.+....+....|...
T Consensus       320 ~~t~~~i~~i~~p~g~~~  337 (346)
T d1jmxb_         320 PDTLEKVKNIKLPGGDMS  337 (346)
T ss_dssp             TTTTEEEEEEECSSSCCB
T ss_pred             CccCCEEEEEECCCCCcc
Confidence            777776666666666544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.53  E-value=2.4e-13  Score=145.80  Aligned_cols=153  Identities=12%  Similarity=-0.009  Sum_probs=108.5

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeE
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSC  141 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~---------L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~  141 (730)
                      ...++.+.+|+.|++++.|++|++||+.+++         ..+|...+.+++|+|||++|+++ ..++.+++||..+++.
T Consensus        64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence            3345566688899999999999999998764         23566667788889999987555 5789999999999999


Q ss_pred             EEEEecCCCCcEEEEEccCCCCEEEEEeCCC-----------cEEEEECCCCe--EEEEecCCCCeEEEEEcCCCCEEEE
Q 004785          142 LKVLHGHRRTPWVVRFHPLNPTIIASGSLDH-----------EVRLWNASTAE--CIGSRDFYRPIASIAFHASGELLAV  208 (730)
Q Consensus       142 l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg-----------tVrLWDl~tg~--~i~~l~h~~~V~sVafSPdG~~LAs  208 (730)
                      +..+..|...+..+.+.+.+....+..+.|+           .+.+++.....  .+....+...+..+.|+|+|+++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  223 (426)
T d1hzua2         144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT  223 (426)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred             eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEe
Confidence            8888777655555555442222333334444           44444444433  2233567778899999999999998


Q ss_pred             EEC--CeEEEEEcCCCcc
Q 004785          209 ASG--HKLYIWRYNMREE  224 (730)
Q Consensus       209 gSd--d~I~VWDl~t~~~  224 (730)
                      +..  +.+.+||...++.
T Consensus       224 a~~~~~~~~~~~~~~~~~  241 (426)
T d1hzua2         224 AANNSNKVAVIDSKDRRL  241 (426)
T ss_dssp             EETTCSEEEEEETTTTEE
T ss_pred             eeecccceeeeecccccE
Confidence            873  3488888877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.1e-12  Score=132.26  Aligned_cols=170  Identities=11%  Similarity=0.065  Sum_probs=125.3

Q ss_pred             EEEEeCCCeEEEEeCCCC------CCCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEE---ecCCCCcE
Q 004785           84 LASWVEAESLHHLRPKYC------PLSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVL---HGHRRTPW  153 (730)
Q Consensus        84 L~Sgs~DgsIrlWd~~t~------~L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l---~gH~~~V~  153 (730)
                      ++++..|++|++|++...      +...|.+.+..|+|||||++|++++ .|+.|++|++........+   ..+...+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            467789999999997643      2336889999999999999996655 4899999999775433222   23445678


Q ss_pred             EEEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEE---ecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccC
Q 004785          154 VVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGS---RDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSS  227 (730)
Q Consensus       154 sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~---l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~  227 (730)
                      .++|+| +++++++++. ++.|.+|+.........   ..+...+.++.|+||++++++++.  ..|.+|+.........
T Consensus        87 ~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          87 HISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            899999 8888877764 77899999887665443   346677889999999999998883  4499999876643221


Q ss_pred             ---CeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          228 ---PRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       228 ---~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                         .............++|++++.+++.+.
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeec
Confidence               112223455678999999999877654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=8.6e-13  Score=143.17  Aligned_cols=153  Identities=11%  Similarity=-0.047  Sum_probs=121.0

Q ss_pred             eEEEEEecCCCEEEEEeCCCeEEEEeCCCCC---------CCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeE
Q 004785           72 QIFEAGRDARRGLASWVEAESLHHLRPKYCP---------LSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSC  141 (730)
Q Consensus        72 ~ll~a~~d~g~~L~Sgs~DgsIrlWd~~t~~---------L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~  141 (730)
                      ...++.+.+++.+++++.|++|++||+.++.         ..+|.+.+.+..|+|||++| ++++.+++|+|||..+++.
T Consensus        64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc
Confidence            4445566788999999999999999988753         23466667777888999986 6778899999999999999


Q ss_pred             EEEEecCC-----------CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE--EecCCCCeEEEEEcCCCCEEEE
Q 004785          142 LKVLHGHR-----------RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG--SRDFYRPIASIAFHASGELLAV  208 (730)
Q Consensus       142 l~~l~gH~-----------~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~--~l~h~~~V~sVafSPdG~~LAs  208 (730)
                      +..+..|.           .....+.++|++..++++...++.|.+||..+++...  .+.+...+..++|+|||+++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~v  223 (432)
T d1qksa2         144 KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFIT  223 (432)
T ss_dssp             EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred             eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEE
Confidence            88876543           4456788999444556777888999999999877544  4567778899999999999998


Q ss_pred             EEC--CeEEEEEcCCCcc
Q 004785          209 ASG--HKLYIWRYNMREE  224 (730)
Q Consensus       209 gSd--d~I~VWDl~t~~~  224 (730)
                      ++.  +.+.++|..+.+.
T Consensus       224 a~~~~~~v~v~d~~~~~~  241 (432)
T d1qksa2         224 AANARNKLVVIDTKEGKL  241 (432)
T ss_dssp             EEGGGTEEEEEETTTTEE
T ss_pred             eccccceEEEeecccceE
Confidence            883  4499999887654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.42  E-value=1.9e-11  Score=120.85  Aligned_cols=179  Identities=17%  Similarity=0.225  Sum_probs=136.2

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      +...++++..++.+.+|+..+++   ...+...+.++.|+|||+.++.. ..+..+.+|+..+++.+..+..+. .+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  163 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGI  163 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred             cccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-CceEE
Confidence            33455667788899999988763   22455678899999999987554 558899999999999888887554 58889


Q ss_pred             EEccCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-C---CeEEEEEcCCCccccCCeE
Q 004785          156 RFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G---HKLYIWRYNMREETSSPRI  230 (730)
Q Consensus       156 afSP~dg~lLaSgS-~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-d---d~I~VWDl~t~~~~~~~~~  230 (730)
                      .++| ++..++++. .++.+.+|+....+..........+..++|+++|+.++++. +   +.|++||+.+++...    
T Consensus       164 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~----  238 (301)
T d1l0qa2         164 AVTP-DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA----  238 (301)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE----
T ss_pred             Eeec-cccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE----
Confidence            9999 666666555 45778889988888888887778889999999999887665 2   349999999887543    


Q ss_pred             EecCCCCeEEEEEccCCCeEEEEEe------eCCccCCCc
Q 004785          231 VLRTRRSLRAVHFHPHAAPLLLTAE------VNDLDSSES  264 (730)
Q Consensus       231 l~~h~~~V~sVaFSPdG~~Llatgs------vwdl~s~~~  264 (730)
                      ...+...+..++|+|||+++++++.      +||+.+++.
T Consensus       239 ~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~  278 (301)
T d1l0qa2         239 RIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI  278 (301)
T ss_dssp             EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence            2344567899999999998866553      455554433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.33  E-value=4.9e-11  Score=119.23  Aligned_cols=181  Identities=18%  Similarity=0.115  Sum_probs=130.1

Q ss_pred             EEecCCCEE-EEEeCCCeEEEEeCCCCCC----CCC-----CCCeEEEEECCCCCEEEEEeC------------CCeEEE
Q 004785           76 AGRDARRGL-ASWVEAESLHHLRPKYCPL----SPP-----PRSTIAAAFSPDGKTLASTHG------------DHTVKI  133 (730)
Q Consensus        76 a~~d~g~~L-~Sgs~DgsIrlWd~~t~~L----~gH-----~~~Vt~lafSPDG~~LaSgS~------------DgtVrV  133 (730)
                      +...+++.+ +++..++.|.+||..++++    ..+     ...+..++|+||+++++++..            +..+.+
T Consensus        40 ~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~  119 (337)
T d1pbyb_          40 MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL  119 (337)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceee
Confidence            333455655 5778899999999988742    222     234568999999999988764            578999


Q ss_pred             EECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEe-------------------------
Q 004785          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSR-------------------------  188 (730)
Q Consensus       134 WDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l-------------------------  188 (730)
                      ||..+++.+..+..+ ..+..++|+| +++++++++.|  +.+||..+++....+                         
T Consensus       120 ~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (337)
T d1pbyb_         120 YDAETLSRRKAFEAP-RQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS  195 (337)
T ss_dssp             EETTTTEEEEEEECC-SSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred             ccccCCeEEEecccc-CCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecccccc
Confidence            999999998888754 5588899999 88888887654  778888776543322                         


Q ss_pred             ------------------------------------------cCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcccc
Q 004785          189 ------------------------------------------DFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETS  226 (730)
Q Consensus       189 ------------------------------------------~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~  226 (730)
                                                                .+...+..+.++|++.+++.. ++.|++||+.+++...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~  274 (337)
T d1pbyb_         196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIK  274 (337)
T ss_dssp             TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEE
T ss_pred             ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEE
Confidence                                                      122234456777888877655 4679999999987654


Q ss_pred             CCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCCccCCCcc
Q 004785          227 SPRIVLRTRRSLRAVHFHPHAAPLLLTAE-----VNDLDSSESS  265 (730)
Q Consensus       227 ~~~~l~~h~~~V~sVaFSPdG~~Llatgs-----vwdl~s~~~~  265 (730)
                          ...+...+.+++|+|||+++++++.     +||..+.+..
T Consensus       275 ----~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         275 ----RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ----EEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             ----EEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence                3456677899999999998877653     5555544433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.33  E-value=1.2e-11  Score=124.37  Aligned_cols=138  Identities=10%  Similarity=0.089  Sum_probs=107.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECCCCeEEEEecC
Q 004785          113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSRDF  190 (730)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l~h  190 (730)
                      ++|++++++|++++.|++|.+||+.+++.++.++ .|...+..++|+| +++++ +++..++.|++||+.+++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            5789999999999999999999999999999887 4566788999999 66655 6677899999999999998877542


Q ss_pred             C-------CCeEEEEEcCCCCEEEEEE-------------CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          191 Y-------RPIASIAFHASGELLAVAS-------------GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       191 ~-------~~V~sVafSPdG~~LAsgS-------------dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      .       ..+..++|+|||++|++++             +..+.+||..+++..... ........+..+.++++++.+
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  159 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-RTFPMPRQVYLMRAADDGSLY  159 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-EEEECCSSCCCEEECTTSCEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEE-EeeeccCceEEEEecCCCEEE
Confidence            2       2456899999999988775             234899998887664422 223334566777788888754


Q ss_pred             EE
Q 004785          251 LL  252 (730)
Q Consensus       251 la  252 (730)
                      +.
T Consensus       160 ~~  161 (346)
T d1jmxb_         160 VA  161 (346)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.18  E-value=5.2e-09  Score=107.31  Aligned_cols=167  Identities=7%  Similarity=-0.070  Sum_probs=91.9

Q ss_pred             cEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-------CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCcc
Q 004785          152 PWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-------FYRPIASIAFHASGELLAVASGHKLYIWRYNMREE  224 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-------h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~  224 (730)
                      +.++.|+|++...+++.+.|+++.+||..+++......       .......+.+++++.+++.+.++++++|+......
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE
Confidence            34566777444566788889999999988877665432       12234556777888777777777799999887653


Q ss_pred             ccCCeEEecC----------CCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCC
Q 004785          225 TSSPRIVLRT----------RRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPG  294 (730)
Q Consensus       225 ~~~~~~l~~h----------~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~  294 (730)
                      .. ......+          ......+++++++..++........       ....      .....+.+++..++....
T Consensus       247 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~------~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         247 TN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA-------WKLH------AAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             EE-EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce-------EEee------cCCCeEEEEECCCCcEEE
Confidence            22 1111111          2234456677777655543321110       0000      011245566655554333


Q ss_pred             cccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCC
Q 004785          295 LAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRS  338 (730)
Q Consensus       295 L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~s  338 (730)
                      ....    ......+.|+|||+++++..+..+  .++..+|+.+
T Consensus       313 ~~~~----~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~t  350 (373)
T d2madh_         313 QISL----GHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGA  350 (373)
T ss_pred             EecC----CCCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCC
Confidence            2211    223457899999998655333332  2345555543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.1e-10  Score=113.86  Aligned_cols=133  Identities=9%  Similarity=0.087  Sum_probs=98.6

Q ss_pred             EEEEEeCCCeEEEEECCCCeEEEEE--ecCCCCcEEEEEccCCCCEEE-EEeCCCcEEEEECCCCeEE----EEecCCCC
Q 004785          121 TLASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNPTIIA-SGSLDHEVRLWNASTAECI----GSRDFYRP  193 (730)
Q Consensus       121 ~LaSgS~DgtVrVWDl~tg~~l~~l--~gH~~~V~sVafSP~dg~lLa-SgS~DgtVrLWDl~tg~~i----~~l~h~~~  193 (730)
                      .+++++.|++|++||+.+...+..+  ..|.+.+..|+|+| ++++|+ ++..|+.|++|++......    ........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            3567778999999999765433333  36888999999999 777664 5556899999999765322    22345567


Q ss_pred             eEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          194 IASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       194 V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      +..++|+|||++|++++.  +.|.+|+........ ......+...+.++.|+||+++++.+..
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~v~~s~d~~~~~~~~~  147 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG-VVDVVEGLDGCHSANISPDNRTLWVPAL  147 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE-EEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeecccccccee-cccccCCCccceEEEeeecceeeecccc
Confidence            788999999999999983  349999887765433 2334556778899999999998776653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=1.4e-09  Score=116.99  Aligned_cols=141  Identities=11%  Similarity=0.102  Sum_probs=110.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec-----CCCCcEEEEEccCCCCEEEEEeC---------CCcEEEE
Q 004785          112 AAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG-----HRRTPWVVRFHPLNPTIIASGSL---------DHEVRLW  177 (730)
Q Consensus       112 ~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g-----H~~~V~sVafSP~dg~lLaSgS~---------DgtVrLW  177 (730)
                      .+.|.+|+++++.  +|+.+++||+.+++....+..     |...|.++.|+| |++.|+.++.         ++.+.||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEE
Confidence            5789999987763  578899999999988766654     457799999999 8888887643         5678999


Q ss_pred             ECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCe------EEec---------CCCCeEEEE
Q 004785          178 NASTAECIGSRDFYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPR------IVLR---------TRRSLRAVH  242 (730)
Q Consensus       178 Dl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~------~l~~---------h~~~V~sVa  242 (730)
                      |+.+++......+...+..+.|||||+.||...++.+++|+..+++......      ...+         .......+.
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            9999987776778889999999999999999999999999998876533110      0011         123345688


Q ss_pred             EccCCCeEEEEEe
Q 004785          243 FHPHAAPLLLTAE  255 (730)
Q Consensus       243 FSPdG~~Llatgs  255 (730)
                      |||||++|+....
T Consensus       178 wSPDGk~ia~~~~  190 (470)
T d2bgra1         178 WSPNGTFLAYAQF  190 (470)
T ss_dssp             ECTTSSEEEEEEE
T ss_pred             ECCCCCccceeEe
Confidence            9999998887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.06  E-value=4.9e-09  Score=106.30  Aligned_cols=99  Identities=10%  Similarity=0.017  Sum_probs=72.4

Q ss_pred             CCCeEEEEeCCCCCCCC--CCCCeEEEEECCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecCCC------
Q 004785           89 EAESLHHLRPKYCPLSP--PPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGHRR------  150 (730)
Q Consensus        89 ~DgsIrlWd~~t~~L~g--H~~~Vt~lafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH~~------  150 (730)
                      .+..|.+||..++++.+  +.+.+..++|||||++|++.+          .|+.|++||+.+++.+..+..+..      
T Consensus        26 ~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~  105 (355)
T d2bbkh_          26 AVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG  105 (355)
T ss_dssp             SSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBS
T ss_pred             CcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecC
Confidence            35579999998874221  122344799999999988654          478999999999998887764432      


Q ss_pred             -CcEEEEEccCCCCEEEEEe--CCCcEEEEECCCCeEEEEe
Q 004785          151 -TPWVVRFHPLNPTIIASGS--LDHEVRLWNASTAECIGSR  188 (730)
Q Consensus       151 -~V~sVafSP~dg~lLaSgS--~DgtVrLWDl~tg~~i~~l  188 (730)
                       ....++|+| ++++++.++  .+..+.+||..+++.+..+
T Consensus       106 ~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d2bbkh_         106 TYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRML  145 (355)
T ss_dssp             CCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence             345689999 777766654  5678999999998776553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.06  E-value=3e-09  Score=114.26  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             eCCCeEEEEeCCCC---------CCCCCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEECCCCeEEEEEecCC
Q 004785           88 VEAESLHHLRPKYC---------PLSPPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCLKVLHGHR  149 (730)
Q Consensus        88 s~DgsIrlWd~~t~---------~L~gH~~~Vt~lafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l~~l~gH~  149 (730)
                      .+++.|.+||+.++         ++..|...|.++.|||||++|+.+++         ++.+.|||+++++ +..+..|.
T Consensus        33 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~  111 (470)
T d2bgra1          33 KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIP  111 (470)
T ss_dssp             ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCC
T ss_pred             EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCC
Confidence            45778899998876         35667788999999999999998864         5678999999887 55678888


Q ss_pred             CCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecC-------------------CCCeEEEEEcCCCCEEEEEE
Q 004785          150 RTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDF-------------------YRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h-------------------~~~V~sVafSPdG~~LAsgS  210 (730)
                      ..+..+.|+| +++.++.. .|+.+++|+..+++..+....                   .+....+.|||||++|++..
T Consensus       112 ~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         112 NNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             TTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             cccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence            9999999999 88888875 567899999998877655321                   12345688999999999886

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=3.5e-07  Score=89.54  Aligned_cols=213  Identities=13%  Similarity=0.126  Sum_probs=136.0

Q ss_pred             CCCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CCCc--EEE
Q 004785          103 LSPPPRSTIAAAFSPDGKTLASTHGD---HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LDHE--VRL  176 (730)
Q Consensus       103 L~gH~~~Vt~lafSPDG~~LaSgS~D---gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~Dgt--VrL  176 (730)
                      +..+...+...+|||||+.||.....   ..+.+.+..++.. ..+..+.+......|+| ++..++... .++.  +..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecC-CCCeeeEeeecCCccceee
Confidence            34456678899999999999987663   3577778776664 44555777888999999 666665544 3433  334


Q ss_pred             EECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCe--EEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEE
Q 004785          177 WNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHK--LYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       177 WDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~--I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Lla  252 (730)
                      +.....................++++++.++..+  ++.  |.+.++......    .............|+|+|+.++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         112 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCCSSSEEEEEEECTTSSEEEE
T ss_pred             cccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce----eeecccccccccccccccceeEE
Confidence            4444444444455566667778899888766665  232  777777665432    34455667778899999998887


Q ss_pred             EEeeCCccCCCcceeEeccCCcccCCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccc
Q 004785          253 TAEVNDLDSSESSLTLATSPGYWRYPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRT  332 (730)
Q Consensus       253 tgsvwdl~s~~~~~~l~t~sG~~~~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~  332 (730)
                      ........                    .+.+.+...... .+..    .......|.|||||++|++.... .....++
T Consensus       188 ~~~~~~~~--------------------~i~~~~~~~~~~-~~~~----~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~  241 (269)
T d2hqsa1         188 VSSNGGQQ--------------------HIAKQDLATGGV-QVLS----STFLDETPSLAPNGTMVIYSSSQ-GMGSVLN  241 (269)
T ss_dssp             EEECSSCE--------------------EEEEEETTTCCE-EECC----CSSSCEEEEECTTSSEEEEEEEE-TTEEEEE
T ss_pred             EeecCCce--------------------eeeEeecccccc-eEee----cCccccceEECCCCCEEEEEEcC-CCCcEEE
Confidence            76532111                    122222121111 1111    11234579999999999996544 3456788


Q ss_pred             eeecCCCcceeeecc
Q 004785          333 QQSLRSSSSVRLLTY  347 (730)
Q Consensus       333 ~~~~~ss~~~~l~~~  347 (730)
                      ..+++++..++|+..
T Consensus       242 ~~~~dg~~~~~lt~~  256 (269)
T d2hqsa1         242 LVSTDGRFKARLPAT  256 (269)
T ss_dssp             EEETTSCCEEECCCS
T ss_pred             EEECCCCCEEEEeCC
Confidence            899988887777654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.94  E-value=2.8e-08  Score=101.66  Aligned_cols=159  Identities=9%  Similarity=0.010  Sum_probs=109.8

Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEECCCCeEEEEEec---------------
Q 004785           84 LASWVEAESLHHLRPKYCPLSPPPRSTIAAAFSPDGKTL-ASTHGDHTVKIIDCQTGSCLKVLHG---------------  147 (730)
Q Consensus        84 L~Sgs~DgsIrlWd~~t~~L~gH~~~Vt~lafSPDG~~L-aSgS~DgtVrVWDl~tg~~l~~l~g---------------  147 (730)
                      ++.+..++.+.+|+....+...+.....++.|+|+|+.+ ++.+.|+++.+||..+++.......               
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (373)
T d2madh_         141 FFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQ  220 (373)
T ss_pred             EEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEE
Confidence            334455667888888777777777778888999988754 5677889999998765543322110               


Q ss_pred             ----------------------------------CC----------CCcEEEEEccCCCC----------EEEEEeCCCc
Q 004785          148 ----------------------------------HR----------RTPWVVRFHPLNPT----------IIASGSLDHE  173 (730)
Q Consensus       148 ----------------------------------H~----------~~V~sVafSP~dg~----------lLaSgS~Dgt  173 (730)
                                                        +.          .....+++++ ++.          .+++...++.
T Consensus       221 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~  299 (373)
T d2madh_         221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLK-SSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             ECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEec-CCCeEEEecCCCceEEeecCCCe
Confidence                                              00          0111234444 222          2334556678


Q ss_pred             EEEEECCCCeEEEEecCCCCeEEEEEcCCCCEE--EEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004785          174 VRLWNASTAECIGSRDFYRPIASIAFHASGELL--AVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH  246 (730)
Q Consensus       174 VrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~L--AsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPd  246 (730)
                      |.+||..+++.+..+.+...+..++|+|||+.+  ++++ ++.|+|||+.+++.+.   .+..+....+.|++.++
T Consensus       300 v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~---~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         300 VTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ---STVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE---EECCCCCCCcEEEEecC
Confidence            999999999999999988999999999999853  4444 4459999999998755   56667777777776554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.71  E-value=2.4e-07  Score=95.79  Aligned_cols=115  Identities=8%  Similarity=-0.164  Sum_probs=80.0

Q ss_pred             eEEEEeCCCCCC----CCCCCCeEEEEECCCCCEEEEEe----------CCCeEEEEECCCCeEEEEEecCCC-------
Q 004785           92 SLHHLRPKYCPL----SPPPRSTIAAAFSPDGKTLASTH----------GDHTVKIIDCQTGSCLKVLHGHRR-------  150 (730)
Q Consensus        92 sIrlWd~~t~~L----~gH~~~Vt~lafSPDG~~LaSgS----------~DgtVrVWDl~tg~~l~~l~gH~~-------  150 (730)
                      .|.+||..++++    ..+..  ..++|+|||+.|++.+          .|+.|++||..+++.+..+..+..       
T Consensus        47 ~~~~~d~~~~~~~~~~~~~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          47 ENWVSCAGCGVTLGHSLGAFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEeCCCCcEEEEEeCCCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence            356668777632    23333  3589999999998865          377899999999999888865432       


Q ss_pred             CcEEEEEccCCCCEEEEEe-CCCcEEEEECCCCeEEEEecCCC--------CeEEEEEcCCCCEEEEE
Q 004785          151 TPWVVRFHPLNPTIIASGS-LDHEVRLWNASTAECIGSRDFYR--------PIASIAFHASGELLAVA  209 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~i~~l~h~~--------~V~sVafSPdG~~LAsg  209 (730)
                      ....++|+| ++++++.+. .++.|.+||+.+++.+..+....        ....+.+++||++++..
T Consensus       125 ~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         125 RVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             CTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred             CccceEECC-CCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEE
Confidence            234699999 777666654 67999999999998877654221        22345566666655444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.70  E-value=3.5e-08  Score=99.78  Aligned_cols=139  Identities=18%  Similarity=0.093  Sum_probs=98.0

Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE--EEEecCC----------CCcEEEEEccCCCCEEEEEeCC-
Q 004785          105 PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCL--KVLHGHR----------RTPWVVRFHPLNPTIIASGSLD-  171 (730)
Q Consensus       105 gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l--~~l~gH~----------~~V~sVafSP~dg~lLaSgS~D-  171 (730)
                      .+...+....+++++..++.++.++.+++|++..++..  .....+.          .....+++++ ++..++....+ 
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~  270 (355)
T d2bbkh_         192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQR  270 (355)
T ss_dssp             TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEEC
T ss_pred             eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccC
Confidence            34445666788888999999999999999999887532  2222221          2234588898 66666554332 


Q ss_pred             ---------CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC-EEEEEE--CCeEEEEEcCCCccccCCeEEecCCCCeE
Q 004785          172 ---------HEVRLWNASTAECIGSRDFYRPIASIAFHASGE-LLAVAS--GHKLYIWRYNMREETSSPRIVLRTRRSLR  239 (730)
Q Consensus       172 ---------gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~-~LAsgS--dd~I~VWDl~t~~~~~~~~~l~~h~~~V~  239 (730)
                               ..|.+||..+++.+..+.....+.+++|+|||+ +|++++  ++.|+|||+.+++.+.   .+..+.....
T Consensus       271 ~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~---~i~~~G~~p~  347 (355)
T d2bbkh_         271 DEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR---SVNQLGHGPQ  347 (355)
T ss_dssp             CTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE---EECCCCSSCC
T ss_pred             CceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEE---EEeCcCCCcc
Confidence                     369999999999988888777789999999998 344433  4569999999998654   4445555555


Q ss_pred             EEEEccCC
Q 004785          240 AVHFHPHA  247 (730)
Q Consensus       240 sVaFSPdG  247 (730)
                      .+.+.++|
T Consensus       348 ~i~~~d~~  355 (355)
T d2bbkh_         348 VITTADMG  355 (355)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            56555443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.65  E-value=1.6e-07  Score=97.12  Aligned_cols=156  Identities=8%  Similarity=-0.038  Sum_probs=94.8

Q ss_pred             eCCCeEEEEeCCCCCCC----CC-------CCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           88 VEAESLHHLRPKYCPLS----PP-------PRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        88 s~DgsIrlWd~~t~~L~----gH-------~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ..|+.|++||..+.+..    .+       ......++|+|||++|+++. .++.|.+||+.+++.+..+..+.....  
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--  170 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--  170 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--
Confidence            34778999999876321    11       12234689999999998886 479999999999998888765543211  


Q ss_pred             EEccCCCCEEEEEeCCCcEEE----------------------------------------------EECCCCeEEEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRL----------------------------------------------WNASTAECIGSRD  189 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrL----------------------------------------------WDl~tg~~i~~l~  189 (730)
                        .|.+...++..+.|+++.+                                              +|+..++......
T Consensus       171 --~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         171 --HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             --EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECC
T ss_pred             --ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEee
Confidence              1112223333333333333                                              3333322221110


Q ss_pred             C-------------CCCeEEEEEcCCCCEEEEEE--C--------CeEEEEEcCCCccccCCeEEecCCCCeEEEEEccC
Q 004785          190 F-------------YRPIASIAFHASGELLAVAS--G--------HKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPH  246 (730)
Q Consensus       190 h-------------~~~V~sVafSPdG~~LAsgS--d--------d~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPd  246 (730)
                      .             ......++++|++..+++..  +        ..|++||..+++.+.    ...+...+.+++|+||
T Consensus       249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~----~~~~~~~~~~~a~spD  324 (368)
T d1mdah_         249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG----PISNGHDSDAIIAAQD  324 (368)
T ss_dssp             CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE----CCEEEEEECEEEECCS
T ss_pred             cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE----EecCCCceeEEEECCC
Confidence            0             01223578899998776654  1        138999999887654    2233456889999999


Q ss_pred             CCeEE
Q 004785          247 AAPLL  251 (730)
Q Consensus       247 G~~Ll  251 (730)
                      |+.++
T Consensus       325 G~~~l  329 (368)
T d1mdah_         325 GASDN  329 (368)
T ss_dssp             SSCEE
T ss_pred             CCEEE
Confidence            98543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.42  E-value=9.2e-07  Score=96.01  Aligned_cols=104  Identities=13%  Similarity=0.013  Sum_probs=78.4

Q ss_pred             CCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCeEEEEEe-cCCCCcEEEEEccCCCC--EEEEEeCCC---------
Q 004785          106 PPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGSCLKVLH-GHRRTPWVVRFHPLNPT--IIASGSLDH---------  172 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~~l~~l~-gH~~~V~sVafSP~dg~--lLaSgS~Dg---------  172 (730)
                      |...+....++|||++|++.. .+..|.++|+++++..+.+. .+...+..++|+| +++  +++..+.+.         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence            334456666789999997765 47899999999999888775 3567799999999 555  343333332         


Q ss_pred             --------cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 004785          173 --------EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS  210 (730)
Q Consensus       173 --------tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS  210 (730)
                              .+..+|..+.+....+........+.|+|||+++++.+
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~  194 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTC  194 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEe
Confidence                    23558888888777766666788999999999999887

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=4.2e-05  Score=74.16  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=100.8

Q ss_pred             EEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEE
Q 004785           93 LHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHGD-H--TVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIA  166 (730)
Q Consensus        93 IrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~D-g--tVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLa  166 (730)
                      +.+.+...+   .+..+.+......|+|||+.|+..... +  .+..+......... ............+++.+...++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  143 (269)
T d2hqsa1          65 LVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAF  143 (269)
T ss_dssp             EEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccccee-eeecccccccccccccccccee
Confidence            444444443   355677888999999999998877652 2  23333333333332 2334444555677774455555


Q ss_pred             EEeCCC--cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC-C-e--EEEEEcCCCccccCCeEEecCCCCeEE
Q 004785          167 SGSLDH--EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG-H-K--LYIWRYNMREETSSPRIVLRTRRSLRA  240 (730)
Q Consensus       167 SgS~Dg--tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd-d-~--I~VWDl~t~~~~~~~~~l~~h~~~V~s  240 (730)
                      +...++  .|.+.++..+................|+|+|+.++..+. + .  |.+.|...+..     ....+......
T Consensus       144 ~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~  218 (269)
T d2hqsa1         144 TSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTFLDET  218 (269)
T ss_dssp             EECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-----EECCCSSSCEE
T ss_pred             cccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-----eEeecCccccc
Confidence            555555  466667777766655666677788899999998888773 2 2  55555544432     34445566788


Q ss_pred             EEEccCCCeEEEEEe
Q 004785          241 VHFHPHAAPLLLTAE  255 (730)
Q Consensus       241 VaFSPdG~~Llatgs  255 (730)
                      ..|||||++|+.++.
T Consensus       219 p~~SPDG~~i~f~s~  233 (269)
T d2hqsa1         219 PSLAPNGTMVIYSSS  233 (269)
T ss_dssp             EEECTTSSEEEEEEE
T ss_pred             eEECCCCCEEEEEEc
Confidence            899999999988765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=7e-06  Score=89.16  Aligned_cols=137  Identities=12%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCC---CCcEEEEEccCCCCEEEEEe---------CCCcEEEEECC
Q 004785          113 AAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHR---RTPWVVRFHPLNPTIIASGS---------LDHEVRLWNAS  180 (730)
Q Consensus       113 lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~---~~V~sVafSP~dg~lLaSgS---------~DgtVrLWDl~  180 (730)
                      ..|.+++.++.. ..++.|.+||+.+++....+..+.   -.+....|+| +++.++...         ..+.+.++|+.
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            358888776643 457899999999887655554332   3567788999 777766543         35678999999


Q ss_pred             CCeEEEEec---CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCccccCCeEEec-CCCC-----------------eE
Q 004785          181 TAECIGSRD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMREETSSPRIVLR-TRRS-----------------LR  239 (730)
Q Consensus       181 tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~~~~~~~~l~~-h~~~-----------------V~  239 (730)
                      +++......   ....+....|||||+.||...++.|++.+...+...+   .... ....                 -.
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~---lt~~g~~~~i~nG~~d~vyeee~~~~~~  176 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIR---VVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEE---EECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEE---EecccCcceeeccccchhhhhhhccccc
Confidence            987655432   2345667899999999999999999999887765432   2211 1111                 24


Q ss_pred             EEEEccCCCeEEEEE
Q 004785          240 AVHFHPHAAPLLLTA  254 (730)
Q Consensus       240 sVaFSPdG~~Llatg  254 (730)
                      .+.|||||++|+...
T Consensus       177 a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         177 AHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEEECTTSSEEEEEE
T ss_pred             eEEECCCCCeEEEEE
Confidence            778999999988764

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.1e-05  Score=87.59  Aligned_cols=120  Identities=9%  Similarity=-0.014  Sum_probs=80.7

Q ss_pred             CCCeEEEEeCCCCC----CC---CCCCCeEEEEECCCCCEEEEEeC---------CCeEEEEECCCCeEEEEEe--cCCC
Q 004785           89 EAESLHHLRPKYCP----LS---PPPRSTIAAAFSPDGKTLASTHG---------DHTVKIIDCQTGSCLKVLH--GHRR  150 (730)
Q Consensus        89 ~DgsIrlWd~~t~~----L~---gH~~~Vt~lafSPDG~~LaSgS~---------DgtVrVWDl~tg~~l~~l~--gH~~  150 (730)
                      .++.|.+||+.+++    +.   -....+....|||||++|+...+         .+.+.++|+.+++......  ....
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~  114 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA  114 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCcc
Confidence            44567777776542    11   12235678899999999887643         5688999999887543322  2334


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCC--C-----------------CeEEEEEcCCCCEEEEEE
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFY--R-----------------PIASIAFHASGELLAVAS  210 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~--~-----------------~V~sVafSPdG~~LAsgS  210 (730)
                      .+....|+| +++.++... ++.|.+.+..++..++.....  .                 .-.++.|||||++||...
T Consensus       115 ~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         115 KLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             CCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            566789999 776666654 567999998877666554311  1                 124678999999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.24  E-value=3e-05  Score=78.23  Aligned_cols=174  Identities=10%  Similarity=0.089  Sum_probs=117.1

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCC--CCCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC--eEEEEE-ecCCC
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYC--PLSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG--SCLKVL-HGHRR  150 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~--~L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg--~~l~~l-~gH~~  150 (730)
                      +...++..+++...+++|..|+....  .+......+.+++|++||+++++...++.+.+|+....  ...... .....
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI  113 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCcc
Confidence            34456677778888888888886643  24455677999999999999998888888888876542  222222 22445


Q ss_pred             CcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEec-----------CCCCeEEEEEcCCCCEEEEEE--CCeEEEE
Q 004785          151 TPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRD-----------FYRPIASIAFHASGELLAVAS--GHKLYIW  217 (730)
Q Consensus       151 ~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~-----------h~~~V~sVafSPdG~~LAsgS--dd~I~VW  217 (730)
                      ..+.+.+.+ +++++++-+.++.+..+|...+.......           .......+.++  +..|+.+.  .+.|+.+
T Consensus       114 ~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~  190 (302)
T d2p4oa1         114 FLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRI  190 (302)
T ss_dssp             CEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             ccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEec
Confidence            678899999 88999998899999999998876443221           11244566664  55666665  4458888


Q ss_pred             EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          218 RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       218 Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      +............ .........++|+++|+.+++.
T Consensus       191 ~~~~~~~~~~~~~-~~~~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         191 PVDSTDKPGEPEI-FVEQTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EBCTTSCBCCCEE-EEESCCCSSEEEBTTCCEEEEC
T ss_pred             ccccccccccccc-ccCCCCCcceEECCCCCEEEEE
Confidence            8876544332222 2233456789999999855543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=3.1e-05  Score=75.02  Aligned_cols=94  Identities=18%  Similarity=0.223  Sum_probs=69.3

Q ss_pred             EECCC--CCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEe-CC-----CcEEEEECCCCeEE
Q 004785          114 AFSPD--GKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGS-LD-----HEVRLWNASTAECI  185 (730)
Q Consensus       114 afSPD--G~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS-~D-----gtVrLWDl~tg~~i  185 (730)
                      ..|||  |++++..+. +.|.+.|+.+++. +.|..+.+.+...+||| |++.|+... .+     ..|.+++..+++..
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            45788  999887754 5799999998875 45666777788999999 777666543 22     24888898888876


Q ss_pred             EEecCC-------CCeEEEEEcCCCCEEEEEE
Q 004785          186 GSRDFY-------RPIASIAFHASGELLAVAS  210 (730)
Q Consensus       186 ~~l~h~-------~~V~sVafSPdG~~LAsgS  210 (730)
                      ......       .......|+|||+.|+...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            653322       3456789999999998875

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.16  E-value=3.2e-05  Score=80.70  Aligned_cols=146  Identities=13%  Similarity=0.066  Sum_probs=94.6

Q ss_pred             CeEEEEECCCCCEEEEEeC-CCeEEEEECCC-CeEE--EEEe--cCCCCcEEEEEccCCCCEE-EEEeCCCcEEEEECCC
Q 004785          109 STIAAAFSPDGKTLASTHG-DHTVKIIDCQT-GSCL--KVLH--GHRRTPWVVRFHPLNPTII-ASGSLDHEVRLWNAST  181 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~-DgtVrVWDl~t-g~~l--~~l~--gH~~~V~sVafSP~dg~lL-aSgS~DgtVrLWDl~t  181 (730)
                      .++++.|+|||++|+++.. ...|.+|+... ++..  ..+.  ........++|+| +++++ ++...+++|.+||+..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            4789999999999888865 45788887654 3322  2222  2345688899999 66655 5566789999999876


Q ss_pred             CeEE--EE---ec---------------CCCCeEEEEEcCCCCEEEEEE--CCe-----EEEEEcCCCccccCCeEE---
Q 004785          182 AECI--GS---RD---------------FYRPIASIAFHASGELLAVAS--GHK-----LYIWRYNMREETSSPRIV---  231 (730)
Q Consensus       182 g~~i--~~---l~---------------h~~~V~sVafSPdG~~LAsgS--dd~-----I~VWDl~t~~~~~~~~~l---  231 (730)
                      ++..  ..   ..               .......+.++|||++|+++.  ++.     |..|++.....+.....+   
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            5422  11   11               111346789999999998875  222     777777654332211111   


Q ss_pred             ecCCCCeEEEEEcc-CCCeEEEEEe
Q 004785          232 LRTRRSLRAVHFHP-HAAPLLLTAE  255 (730)
Q Consensus       232 ~~h~~~V~sVaFSP-dG~~Llatgs  255 (730)
                      .......+.++|+| +|++|+++..
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeC
Confidence            12244567899998 8998877753

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.03  E-value=9.5e-05  Score=76.96  Aligned_cols=148  Identities=14%  Similarity=0.054  Sum_probs=89.0

Q ss_pred             CCCCeEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEEE-ecCCCCcEEEEEccCCCCEE-E-EEe-CCCcEEEEECC
Q 004785          106 PPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQT-GSCLKVL-HGHRRTPWVVRFHPLNPTII-A-SGS-LDHEVRLWNAS  180 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~t-g~~l~~l-~gH~~~V~sVafSP~dg~lL-a-SgS-~DgtVrLWDl~  180 (730)
                      ....+.-|+|++|+++|+++.. +.+..|.+.. +..+... .........+.+++ +++.+ + ++. ..++|..+.+.
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~  115 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEcc
Confidence            3445667999999999988765 4677776653 3322221 22334466788888 65533 2 222 23455544432


Q ss_pred             C-------------CeE---EEE--ecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCe--EEecCCCCe
Q 004785          181 T-------------AEC---IGS--RDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPR--IVLRTRRSL  238 (730)
Q Consensus       181 t-------------g~~---i~~--l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~--~l~~h~~~V  238 (730)
                      .             ++.   ...  ......+.++.|+|||++|++...  +.|++|+...........  .........
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP  195 (365)
T d1jofa_         116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence            1             111   111  122345789999999999999883  559898876543221111  122235678


Q ss_pred             EEEEEccCCCeEEEEEe
Q 004785          239 RAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       239 ~sVaFSPdG~~Llatgs  255 (730)
                      +.+.|+|+|+++.++.+
T Consensus       196 r~i~f~pdg~~~yv~~e  212 (365)
T d1jofa_         196 RWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCceEEEecc
Confidence            99999999998877664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.93  E-value=0.00035  Score=68.68  Aligned_cols=170  Identities=9%  Similarity=-0.007  Sum_probs=109.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVV  155 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sV  155 (730)
                      ..+...++....+.+++++.....   .........+++++++|+++++-.....+.+++............-......+
T Consensus        66 ~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i  145 (260)
T d1rwia_          66 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV  145 (260)
T ss_dssp             TTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEE
T ss_pred             CCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCccee
Confidence            345555555555566666544332   11223567899999999888776667778887765543322222223456789


Q ss_pred             EEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CeEEEEEcCCCccccCCeEEec
Q 004785          156 RFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVASG-HKLYIWRYNMREETSSPRIVLR  233 (730)
Q Consensus       156 afSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgSd-d~I~VWDl~t~~~~~~~~~l~~  233 (730)
                      ++++ +++++++...++.|..+|......... ...-.....++++++|+++++-.. ++|..++........   ....
T Consensus       146 ~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~---~~~~  221 (260)
T d1rwia_         146 AVDN-SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFT  221 (260)
T ss_dssp             EECT-TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE---CCCC
T ss_pred             eecC-CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE---EccC
Confidence            9999 888888888888999999876544333 234466789999999987666654 458878765443211   1112


Q ss_pred             CCCCeEEEEEccCCCeEEE
Q 004785          234 TRRSLRAVHFHPHAAPLLL  252 (730)
Q Consensus       234 h~~~V~sVaFSPdG~~Lla  252 (730)
                      .-.....|+++++|..+++
T Consensus       222 ~~~~P~~i~~d~~g~l~va  240 (260)
T d1rwia_         222 GLNTPLAVAVDSDRTVYVA  240 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEE
T ss_pred             CCCCeEEEEEeCCCCEEEE
Confidence            2346789999999985443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.85  E-value=0.00057  Score=67.78  Aligned_cols=142  Identities=15%  Similarity=0.209  Sum_probs=101.8

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--cCCCC
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--GHRRT  151 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--gH~~~  151 (730)
                      ..+..++.-...+.+.+++.....     ...+......+++.++|..+++....+.|++||. +|+.+..+.  +....
T Consensus       123 ~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~  201 (279)
T d1q7fa_         123 NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNY  201 (279)
T ss_dssp             TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCS
T ss_pred             cCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccC
Confidence            344444454555666666654331     2346677889999999998888888899999995 577777773  34556


Q ss_pred             cEEEEEccCCCCEEEEEeC-CCcEEEEECCCCeEEEEec---CCCCeEEEEEcCCCCEEEEEECCeEEEEEcCCCc
Q 004785          152 PWVVRFHPLNPTIIASGSL-DHEVRLWNASTAECIGSRD---FYRPIASIAFHASGELLAVASGHKLYIWRYNMRE  223 (730)
Q Consensus       152 V~sVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~i~~l~---h~~~V~sVafSPdG~~LAsgSdd~I~VWDl~t~~  223 (730)
                      ...|++.+ +++++++-.. ++.|.+||. +|+.+..+.   .......+++.|||+++++..+++|++|.+.+..
T Consensus       202 P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         202 PIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             Cccccccc-CCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence            78999999 7787777543 457999984 687766653   2346789999999986665546669999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.80  E-value=0.0052  Score=62.06  Aligned_cols=173  Identities=9%  Similarity=-0.002  Sum_probs=106.0

Q ss_pred             CCCEEEEEeCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEECCCCeEEEEEecC--C
Q 004785           80 ARRGLASWVEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLASTHGD----HTVKIIDCQTGSCLKVLHGH--R  149 (730)
Q Consensus        80 ~g~~L~Sgs~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSgS~D----gtVrVWDl~tg~~l~~l~gH--~  149 (730)
                      .+...++-...++|..|+.+...    +.........++|++||+++++...+    +.|...+...+.........  .
T Consensus        50 ~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  129 (319)
T d2dg1a1          50 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  129 (319)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcc
Confidence            34444555677888888877652    22445568899999999888765432    34555565555544433221  2


Q ss_pred             CCcEEEEEccCCCCEEEEEeC------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCC
Q 004785          150 RTPWVVRFHPLNPTIIASGSL------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNM  221 (730)
Q Consensus       150 ~~V~sVafSP~dg~lLaSgS~------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t  221 (730)
                      ..++.+++.+ +++++++...      .+.+..++...+........-...+.++|+||++.|+++.  .++|+.||+..
T Consensus       130 ~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         130 YCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             CCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            3467899999 8887777432      2336666655444333333334567899999999887776  45699999865


Q ss_pred             CccccCCe-----EEecCCCCeEEEEEccCCCeEEEE
Q 004785          222 REETSSPR-----IVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       222 ~~~~~~~~-----~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ........     .........-.+++..+|+.+++.
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~  245 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM  245 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEE
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCCCCEEEEE
Confidence            43211000     011112235679999999865554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.79  E-value=6e-05  Score=81.40  Aligned_cols=99  Identities=4%  Similarity=-0.112  Sum_probs=69.8

Q ss_pred             cEEEEEccCCCCEE-EEEeCCCcEEEEECCCCeEEEEe--cCCCCeEEEEEcCCCC--EEEEEECCeE------------
Q 004785          152 PWVVRFHPLNPTII-ASGSLDHEVRLWNASTAECIGSR--DFYRPIASIAFHASGE--LLAVASGHKL------------  214 (730)
Q Consensus       152 V~sVafSP~dg~lL-aSgS~DgtVrLWDl~tg~~i~~l--~h~~~V~sVafSPdG~--~LAsgSdd~I------------  214 (730)
                      .....+.| |++++ ++...++.|.++|+.+++....+  .....+..++|+|+|+  +++..+.+.+            
T Consensus        74 ~s~t~gtp-DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          74 ISMTDGRY-DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             EEEETTEE-EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             cceecccC-CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            34445578 66666 45567889999999999887764  4678899999999999  4444444433            


Q ss_pred             ------EEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          215 ------YIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       215 ------~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                            ..+|..+.+...    .......+..+.|+|||+++++++.
T Consensus       153 ~~~~~~~~iD~~t~~v~~----qI~v~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         153 NSYTMFTAIDAETMDVAW----QVIVDGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             GEEEEEEEEETTTCSEEE----EEEESSCCCCEEECSSSSEEEEEES
T ss_pred             cccceEEeecCccceeeE----EEecCCCccceEECCCCCEEEEEec
Confidence                  457776665432    1222346788999999998887764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.71  E-value=0.0047  Score=62.45  Aligned_cols=161  Identities=9%  Similarity=0.050  Sum_probs=98.6

Q ss_pred             CCeEEEEeCCCCCCC--------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe-cCCC----CcEEEE
Q 004785           90 AESLHHLRPKYCPLS--------PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH-GHRR----TPWVVR  156 (730)
Q Consensus        90 DgsIrlWd~~t~~L~--------gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~-gH~~----~V~sVa  156 (730)
                      +++|..||..++...        .-.+.-..++|+++|+.|+++.....|..+|...+.. ..+. ...+    ..+.++
T Consensus        45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~  123 (314)
T d1pjxa_          45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCA  123 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEE-ECCSBCTTSCBCBCCCEEE
T ss_pred             CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE-EEEeccccccccCCCcEEE
Confidence            467888888766311        1122356899999999888888777888889765542 2222 1111    357899


Q ss_pred             EccCCCCEEEEEeC---------------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCC----EEEEEE--CCeEE
Q 004785          157 FHPLNPTIIASGSL---------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGE----LLAVAS--GHKLY  215 (730)
Q Consensus       157 fSP~dg~lLaSgS~---------------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~----~LAsgS--dd~I~  215 (730)
                      +.+ ++++.++-..               ++.|..++. .++.......-...+.++|+|+++    .|+++.  .++|+
T Consensus       124 ~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~  201 (314)
T d1pjxa_         124 FDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW  201 (314)
T ss_dssp             ECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred             ECC-CCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceE
Confidence            999 8888887432               234555554 344444433334457899999875    566665  34588


Q ss_pred             EEEcCCCccccCCeEEec----CCCCeEEEEEccCCCeEEEE
Q 004785          216 IWRYNMREETSSPRIVLR----TRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~~----h~~~V~sVaFSPdG~~Llat  253 (730)
                      .||+.....+........    .....-.+++..+|+.+++.
T Consensus       202 ~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         202 SYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             EeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            888765433221111111    12235679999999865554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.70  E-value=0.0014  Score=62.77  Aligned_cols=86  Identities=19%  Similarity=0.187  Sum_probs=58.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCC---CCCCCCCCeEEEEECCCCCEEEEEeC-C-----CeEEEEECCCCeEEEEEe-----
Q 004785           81 RRGLASWVEAESLHHLRPKYC---PLSPPPRSTIAAAFSPDGKTLASTHG-D-----HTVKIIDCQTGSCLKVLH-----  146 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~---~L~gH~~~Vt~lafSPDG~~LaSgS~-D-----gtVrVWDl~tg~~l~~l~-----  146 (730)
                      |+.++-. .++.|.+.|+..+   +|..+.+.+....|||||++||.... +     ..|.+++..+++......     
T Consensus        12 G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~   90 (281)
T d1k32a2          12 GDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKS   90 (281)
T ss_dssp             TTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEE
T ss_pred             CCEEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCc
Confidence            3444332 3556777888876   36677788999999999999987643 1     248888888887543221     


Q ss_pred             -cCCCCcEEEEEccCCCCEEEEE
Q 004785          147 -GHRRTPWVVRFHPLNPTIIASG  168 (730)
Q Consensus       147 -gH~~~V~sVafSP~dg~lLaSg  168 (730)
                       ..........|+| +++.++..
T Consensus        91 ~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          91 TGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             ETTEECSEEEEECT-TCCEEEEE
T ss_pred             cCccccccccccCC-CCCEEEEE
Confidence             1223456789999 77766653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.68  E-value=0.0019  Score=63.90  Aligned_cols=158  Identities=14%  Similarity=0.115  Sum_probs=108.9

Q ss_pred             CCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE--ecCCCCcEEEEEccCCC
Q 004785           89 EAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVL--HGHRRTPWVVRFHPLNP  162 (730)
Q Consensus        89 ~DgsIrlWd~~t~~---L-~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l--~gH~~~V~sVafSP~dg  162 (730)
                      .++.|..++.....   + .........+++.++|+++++....+.+.+++. +++.+..+  ..+......+++.+ ++
T Consensus        91 ~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~-~g  168 (279)
T d1q7fa_          91 PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-KQ  168 (279)
T ss_dssp             GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-SS
T ss_pred             CccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc-ce
Confidence            44466666654321   1 234456789999999998888777888888885 56667666  34556678899998 88


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEecC---CCCeEEEEEcCCCCEEEEEE-CC-eEEEEEcCCCccccCCeEEecCCCC
Q 004785          163 TIIASGSLDHEVRLWNASTAECIGSRDF---YRPIASIAFHASGELLAVAS-GH-KLYIWRYNMREETSSPRIVLRTRRS  237 (730)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~tg~~i~~l~h---~~~V~sVafSPdG~~LAsgS-dd-~I~VWDl~t~~~~~~~~~l~~h~~~  237 (730)
                      +++++....+.|++||.. ++.+..+..   ......|+++++|+++++-. ++ .|.+|+. .++.+. ..........
T Consensus       169 ~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~-~~~~~~~~~~  245 (279)
T d1q7fa_         169 EIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS-ALESKVKHAQ  245 (279)
T ss_dssp             EEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE-EEEESSCCSC
T ss_pred             eEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEE-EEeCCCCCCC
Confidence            888888889999999974 666666653   34578999999999776644 33 4999984 344322 0011112335


Q ss_pred             eEEEEEccCCCeEE
Q 004785          238 LRAVHFHPHAAPLL  251 (730)
Q Consensus       238 V~sVaFSPdG~~Ll  251 (730)
                      .+.|++.+||..++
T Consensus       246 p~~vav~~dG~l~V  259 (279)
T d1q7fa_         246 CFDVALMDDGSVVL  259 (279)
T ss_dssp             EEEEEEETTTEEEE
T ss_pred             EeEEEEeCCCcEEE
Confidence            78999999997433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.62  E-value=0.0029  Score=64.05  Aligned_cols=170  Identities=10%  Similarity=0.074  Sum_probs=106.7

Q ss_pred             cCCCEEEEEeCCCeEEEEeCCCCC---CC----CC-CCCeEEEEECCCCCEEEEEeC---------------CCeEEEEE
Q 004785           79 DARRGLASWVEAESLHHLRPKYCP---LS----PP-PRSTIAAAFSPDGKTLASTHG---------------DHTVKIID  135 (730)
Q Consensus        79 d~g~~L~Sgs~DgsIrlWd~~t~~---L~----gH-~~~Vt~lafSPDG~~LaSgS~---------------DgtVrVWD  135 (730)
                      ..+..++.......|..++.+...   +.    +. -...+.++|.++|++.++-..               ++.|+.++
T Consensus        80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~  159 (314)
T d1pjxa_          80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEe
Confidence            345566666666677788876541   11    11 123678999999988776432               23455555


Q ss_pred             CCCCeEEEEEecCCCCcEEEEEccCCCC-----EEEEEeCCCcEEEEECCCCeEEEE------ec--CCCCeEEEEEcCC
Q 004785          136 CQTGSCLKVLHGHRRTPWVVRFHPLNPT-----IIASGSLDHEVRLWNASTAECIGS------RD--FYRPIASIAFHAS  202 (730)
Q Consensus       136 l~tg~~l~~l~gH~~~V~sVafSP~dg~-----lLaSgS~DgtVrLWDl~tg~~i~~------l~--h~~~V~sVafSPd  202 (730)
                      . .++...... .....+.++|+| +++     ++++-+..+.|..||+.....+..      +.  .......++++.+
T Consensus       160 ~-dg~~~~~~~-~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         160 T-DGQMIQVDT-AFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             T-TSCEEEEEE-EESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             e-cCceeEeeC-CcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            3 344443332 333457899998 443     556667788899998764322211      11  1224568999999


Q ss_pred             CCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          203 GELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       203 G~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      |++.++.. .+.|++||.+.+....   .+......+++++|.||++.|..+.
T Consensus       237 GnlyVa~~~~g~I~~~dp~~g~~~~---~i~~p~~~~t~~afg~d~~~lyVt~  286 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPDGGQPKM---RIRCPFEKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSCSE---EEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEEcCCCEEEEEeCCCCEEEE---EEECCCCCEEEEEEeCCCCEEEEEE
Confidence            99766554 5569999987665322   3344456789999999998776664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=0.00058  Score=67.00  Aligned_cols=175  Identities=9%  Similarity=-0.004  Sum_probs=106.3

Q ss_pred             eEEEEEecCCCEEE-EEeCCCeEEEEeCCCCC---C-CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe
Q 004785           72 QIFEAGRDARRGLA-SWVEAESLHHLRPKYCP---L-SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH  146 (730)
Q Consensus        72 ~ll~a~~d~g~~L~-Sgs~DgsIrlWd~~t~~---L-~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~  146 (730)
                      +.-++....+...+ .....+.|..++.....   + ..-......++++++|+++++....+.+++++-.++..+..+.
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~   95 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD   95 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence            33334433343333 33455666666654331   1 1112345688999999988777777777777655555443333


Q ss_pred             cCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCcc
Q 004785          147 GHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS-RDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREE  224 (730)
Q Consensus       147 gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~-l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~  224 (730)
                      + ......+++.+ +++++++-..+..+..++......... .........++++++|+++++.. ++.|..+|......
T Consensus        96 ~-~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_          96 G-LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             S-CCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             e-eeecccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence            2 34578999999 788888776677788887765433222 22234567899999999766655 45599998776543


Q ss_pred             ccCCeEEecCCCCeEEEEEccCCCeEE
Q 004785          225 TSSPRIVLRTRRSLRAVHFHPHAAPLL  251 (730)
Q Consensus       225 ~~~~~~l~~h~~~V~sVaFSPdG~~Ll  251 (730)
                      ..   .....-.....|+++++|+.++
T Consensus       174 ~~---~~~~~~~~p~gi~~d~~g~l~v  197 (260)
T d1rwia_         174 VV---LPFTDITAPWGIAVDEAGTVYV  197 (260)
T ss_dssp             EE---CCCSSCCSEEEEEECTTCCEEE
T ss_pred             ee---eeccccCCCccceeeeeeeeee
Confidence            21   1223445678999999998443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.58  E-value=0.0012  Score=66.10  Aligned_cols=177  Identities=12%  Similarity=-0.017  Sum_probs=114.6

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEeCCCCC-----C--CCCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEec
Q 004785           75 EAGRDARRGLASWVEAESLHHLRPKYCP-----L--SPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHG  147 (730)
Q Consensus        75 ~a~~d~g~~L~Sgs~DgsIrlWd~~t~~-----L--~gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~g  147 (730)
                      ++...++..+++...++.+..|+.....     +  .......+.+++.++|+++++-+.++.+..+|..++.....+..
T Consensus        73 la~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~  152 (302)
T d2p4oa1          73 LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH  152 (302)
T ss_dssp             EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC
Confidence            4444566677777777777777754331     1  23445688999999999999888899999999888764433221


Q ss_pred             --------C--CCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEE---EecCCCCeEEEEEcCCCCEEEEEE-CCe
Q 004785          148 --------H--RRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIG---SRDFYRPIASIAFHASGELLAVAS-GHK  213 (730)
Q Consensus       148 --------H--~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~---~l~h~~~V~sVafSPdG~~LAsgS-dd~  213 (730)
                              +  ...+..+.+.  +..++++.+.++.|+.+|+.......   ..........++|+++|+++++.. +++
T Consensus       153 ~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~  230 (302)
T d2p4oa1         153 PMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNS  230 (302)
T ss_dssp             GGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCC
T ss_pred             CccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCc
Confidence                    1  1234556664  45677777888999999887643222   122334556799999999666555 455


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEE---ccCCCeEEEEEe
Q 004785          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHF---HPHAAPLLLTAE  255 (730)
Q Consensus       214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaF---SPdG~~Llatgs  255 (730)
                      |..++...... . .......-...++++|   ++|++.|.++..
T Consensus       231 V~~i~p~G~~~-~-~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         231 VVRIAPDRSTT-I-IAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEECTTCCEE-E-EECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEECCCCCEE-E-EEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            88887654321 1 0111223456899999   678887766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.43  E-value=0.0073  Score=60.46  Aligned_cols=170  Identities=13%  Similarity=0.038  Sum_probs=108.1

Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecC----CCCcEE
Q 004785           81 RRGLASWVEAESLHHLRPKYCPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGH----RRTPWV  154 (730)
Q Consensus        81 g~~L~Sgs~DgsIrlWd~~t~~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH----~~~V~s  154 (730)
                      +...++=...++|..||.++++..  .....+.++++.++|.++++ +.+ -|.++|..+++........    ...++.
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd  107 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSND  107 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCccccee
Confidence            333334345566677776665321  23456889999999877765 444 5888999998754433211    124678


Q ss_pred             EEEccCCCCEEEEEeC----CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccc--c
Q 004785          155 VRFHPLNPTIIASGSL----DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREET--S  226 (730)
Q Consensus       155 VafSP~dg~lLaSgS~----DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~--~  226 (730)
                      +.+.| ++++.++...    .+.-.+|.+..++.......-...+.++|+++++.|+....  +.|+.|+++.....  .
T Consensus       108 ~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~  186 (295)
T d2ghsa1         108 GRMHP-SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  186 (295)
T ss_dssp             EEECT-TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             eEECC-CCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc
Confidence            99999 7887776543    23456777777776665554456688999999998877763  45988888543221  1


Q ss_pred             CCeEEe---cCCCCeEEEEEccCCCeEEEE
Q 004785          227 SPRIVL---RTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       227 ~~~~l~---~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ......   ........+++..+|...++.
T Consensus       187 ~~~~~~~~~~~~g~pdG~~vD~~GnlWva~  216 (295)
T d2ghsa1         187 KAEVFIDSTGIKGGMDGSVCDAEGHIWNAR  216 (295)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             ceEEEeccCcccccccceEEcCCCCEEeee
Confidence            122222   224457888999999865543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.39  E-value=0.0042  Score=62.79  Aligned_cols=141  Identities=11%  Similarity=0.104  Sum_probs=95.4

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCC----CcEEEEECCCCeE
Q 004785          109 STIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLD----HEVRLWNASTAEC  184 (730)
Q Consensus       109 ~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~D----gtVrLWDl~tg~~  184 (730)
                      .+..++|+++|++.++-...+.|+.||..+++....+.........++|++ +++++++...+    +.|...|..++..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            356899999999777777789999999888776666666667789999999 88887765432    3455566665554


Q ss_pred             EEEec---CCCCeEEEEEcCCCCEEEEEECC-------eEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          185 IGSRD---FYRPIASIAFHASGELLAVASGH-------KLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       185 i~~l~---h~~~V~sVafSPdG~~LAsgSdd-------~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                      .....   .....+.++++++|++.++...+       .++.++......    ..+...-...+.++|+||++.|..+.
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~----~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV----TPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE----EEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee----EEEeeccceeeeeeeccccceEEEec
Confidence            44433   23457889999999976654321       155554433321    12233334567899999999776654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.20  E-value=0.04  Score=54.77  Aligned_cols=173  Identities=13%  Similarity=0.066  Sum_probs=110.3

Q ss_pred             EEecCCCEEEEEeCCCeEEEEeCCCCCCC------C--CCCCeEEEEECCCCCEEEEEeC----CCeEEEEECCCCeEEE
Q 004785           76 AGRDARRGLASWVEAESLHHLRPKYCPLS------P--PPRSTIAAAFSPDGKTLASTHG----DHTVKIIDCQTGSCLK  143 (730)
Q Consensus        76 a~~d~g~~L~Sgs~DgsIrlWd~~t~~L~------g--H~~~Vt~lafSPDG~~LaSgS~----DgtVrVWDl~tg~~l~  143 (730)
                      +...++ .|+.+..+ -|.++|..++++.      .  ....++.+.+.++|++.++...    .+.-.+|.+..++...
T Consensus        65 ~~~~dg-~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~  142 (295)
T d2ghsa1          65 AKISDS-KQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK  142 (295)
T ss_dssp             EEEETT-EEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE
T ss_pred             EEecCC-CEEEEEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE
Confidence            333444 44445554 5888998877422      1  1224789999999987776543    2345667777777655


Q ss_pred             EEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCC------eEEEEe---cCCCCeEEEEEcCCCCEEEEEE-CCe
Q 004785          144 VLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTA------ECIGSR---DFYRPIASIAFHASGELLAVAS-GHK  213 (730)
Q Consensus       144 ~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg------~~i~~l---~h~~~V~sVafSPdG~~LAsgS-dd~  213 (730)
                      .+... ...+.+.|++++..++++-+..+.|..+++...      +.....   ...+....++++.+|++.++.- .+.
T Consensus       143 ~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~  221 (295)
T d2ghsa1         143 LFADI-SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA  221 (295)
T ss_dssp             EEEEE-SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred             Eeecc-CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCc
Confidence            55443 346789999944446667777888999887531      111111   2344578899999999666554 556


Q ss_pred             EEEEEcCCCccccCCeEEecCCCCeEEEEEc-cCCCeEEEEEe
Q 004785          214 LYIWRYNMREETSSPRIVLRTRRSLRAVHFH-PHAAPLLLTAE  255 (730)
Q Consensus       214 I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFS-PdG~~Llatgs  255 (730)
                      |..||. .++...   .+.-....+++++|- +|.+.|++|+.
T Consensus       222 V~~~dp-~G~~~~---~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         222 VDRYDT-DGNHIA---RYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEECT-TCCEEE---EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             eEEecC-CCcEee---EecCCCCceEEEEEeCCCCCEEEEEEC
Confidence            999995 454433   233234578999996 67777777654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.21  Score=48.70  Aligned_cols=145  Identities=12%  Similarity=0.035  Sum_probs=96.9

Q ss_pred             CCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeE
Q 004785          106 PPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAEC  184 (730)
Q Consensus       106 H~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~  184 (730)
                      +...+.+++|....++|+-. ..++.|+..++..+.....+......+..+++...++++..+-...+.|.+.++.....
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~  113 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence            34457789999877766665 45688999998766655555444467889999874566666766788999999986654


Q ss_pred             EEEec-CCCCeEEEEEcCCCCEEEEEECC--eEEEE--EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          185 IGSRD-FYRPIASIAFHASGELLAVASGH--KLYIW--RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       185 i~~l~-h~~~V~sVafSPdG~~LAsgSdd--~I~VW--Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..... .......++++|...+|+....+  ..+||  +++.....   ......-.....+++++.++.|..+
T Consensus       114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~---~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce---eeeeecccccceEEEeecCcEEEEE
Confidence            43333 23578999999988888766532  23455  44433221   1222333566899999888877665

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=1  Score=43.45  Aligned_cols=161  Identities=9%  Similarity=0.003  Sum_probs=102.7

Q ss_pred             CeEEEEeCCCCC---CCCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEECCCCe----EEEEEecCCCCcEEEEEccCCC
Q 004785           91 ESLHHLRPKYCP---LSPPPRSTIAAAFSPDGKTLASTH-GDHTVKIIDCQTGS----CLKVLHGHRRTPWVVRFHPLNP  162 (730)
Q Consensus        91 gsIrlWd~~t~~---L~gH~~~Vt~lafSPDG~~LaSgS-~DgtVrVWDl~tg~----~l~~l~gH~~~V~sVafSP~dg  162 (730)
                      ..|+..++.+..   +......+.+++|++..++|+-.. .++.|+..++....    ....+......+..+++.+.++
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            346667766542   334455788999999777776654 46677776664321    2223333345677899987567


Q ss_pred             CEEEEEeCCCcEEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CeEEEEEcCCCccccCCeEEecCCCCe
Q 004785          163 TIIASGSLDHEVRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG---HKLYIWRYNMREETSSPRIVLRTRRSL  238 (730)
Q Consensus       163 ~lLaSgS~DgtVrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd---d~I~VWDl~t~~~~~~~~~l~~h~~~V  238 (730)
                      ++..+-...+.|.+.++......... ........++++|...+|+....   .+|.-.++.......   .....-...
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~---l~~~~~~~p  166 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWP  166 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCSCE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec---cccccccee
Confidence            77777777889999999876554433 34467889999997777776652   236666665443211   222334567


Q ss_pred             EEEEEccCCCeEEEEE
Q 004785          239 RAVHFHPHAAPLLLTA  254 (730)
Q Consensus       239 ~sVaFSPdG~~Llatg  254 (730)
                      ..+++++.++.|..+.
T Consensus       167 ~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         167 NGITLDLLSGRLYWVD  182 (266)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             eEEEeeccccEEEEec
Confidence            8999999888777653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.21  E-value=0.15  Score=53.94  Aligned_cols=143  Identities=11%  Similarity=0.104  Sum_probs=94.6

Q ss_pred             EEEECC---CCCEEEEEeC-CCeEEEEECCCCeEEEEEec-CCCCcEEEEEccC-CCCEEEEEeCCC-------------
Q 004785          112 AAAFSP---DGKTLASTHG-DHTVKIIDCQTGSCLKVLHG-HRRTPWVVRFHPL-NPTIIASGSLDH-------------  172 (730)
Q Consensus       112 ~lafSP---DG~~LaSgS~-DgtVrVWDl~tg~~l~~l~g-H~~~V~sVafSP~-dg~lLaSgS~Dg-------------  172 (730)
                      .+.|..   ||++|+.... +..|-+.|+++.++.+.+.. -...+..++..++ +..+++..+.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455554   8999888765 78999999999998765543 2334566666431 445666655532             


Q ss_pred             -----cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEECC----------------eEEEE--------------
Q 004785          173 -----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVASGH----------------KLYIW--------------  217 (730)
Q Consensus       173 -----tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgSdd----------------~I~VW--------------  217 (730)
                           .+.++|..+.+........+....+.+++||+++++.+.+                .+.++              
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                 3678899998887776666677789999999999988621                03333              


Q ss_pred             ---------EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          218 ---------RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       218 ---------Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                               |.+..... .......-......+.++|||+++++++.
T Consensus       249 ~eingV~VVD~~~~~~~-~v~~yIPVpKsPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASS-LFTRYIPIANNPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             EEETTEEEEECSGG--C-SSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             EEeCCceeecccccCCc-ceeEEEecCCCCCceEECCCCCEEEEeCC
Confidence                     33321110 11223333455678999999999998875

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.96  E-value=3.9  Score=41.68  Aligned_cols=232  Identities=9%  Similarity=-0.020  Sum_probs=118.8

Q ss_pred             EEEEEeCCC----eEEEEeCCCCCCCCCC---CCeEEEEECCCCCEEEEEeCC----------------CeEEEEECCCC
Q 004785           83 GLASWVEAE----SLHHLRPKYCPLSPPP---RSTIAAAFSPDGKTLASTHGD----------------HTVKIIDCQTG  139 (730)
Q Consensus        83 ~L~Sgs~Dg----sIrlWd~~t~~L~gH~---~~Vt~lafSPDG~~LaSgS~D----------------gtVrVWDl~tg  139 (730)
                      .+++.+.+|    .|+++|+.++++....   .....+.|++|++.|+....|                ..|++|.+.+.
T Consensus       139 la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~  218 (430)
T d1qfma1         139 FAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTD  218 (430)
T ss_dssp             EEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSC
T ss_pred             EEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCC
Confidence            333554444    5899999988543211   112468899999988765433                35888888765


Q ss_pred             e--EEEEEecCCC--CcEEEEEccCCCCEEEE-Ee--CCCc--EEEEECCCCe--------EEEEecCCCCeEEEEEcCC
Q 004785          140 S--CLKVLHGHRR--TPWVVRFHPLNPTIIAS-GS--LDHE--VRLWNASTAE--------CIGSRDFYRPIASIAFHAS  202 (730)
Q Consensus       140 ~--~l~~l~gH~~--~V~sVafSP~dg~lLaS-gS--~Dgt--VrLWDl~tg~--------~i~~l~h~~~V~sVafSPd  202 (730)
                      .  ....+.....  .+..+..+. ++++++. ..  .+..  +.+.|+....        ................+ +
T Consensus       219 ~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  296 (430)
T d1qfma1         219 QSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN-E  296 (430)
T ss_dssp             GGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE-E
T ss_pred             ccccccccccccCCceEEeeeccC-CcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEec-C
Confidence            3  2344544333  355667777 6666543 32  2333  4444544321        11222222222222223 3


Q ss_pred             CCEEEEEE-C----CeEEEEEcCCCccccCCeEEec-CCCCeEEEEEccCCCeEEEEEeeCCccCCCcceeEeccCCccc
Q 004785          203 GELLAVAS-G----HKLYIWRYNMREETSSPRIVLR-TRRSLRAVHFHPHAAPLLLTAEVNDLDSSESSLTLATSPGYWR  276 (730)
Q Consensus       203 G~~LAsgS-d----d~I~VWDl~t~~~~~~~~~l~~-h~~~V~sVaFSPdG~~Llatgsvwdl~s~~~~~~l~t~sG~~~  276 (730)
                      |..+..-+ .    .+|...++....... ...+.. +...+..-.+.-.+.+|+.....+...                
T Consensus       297 ~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~-w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~----------------  359 (430)
T d1qfma1         297 GTVFTFKTNRHSPNYRLINIDFTDPEESK-WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN----------------  359 (430)
T ss_dssp             TTEEEEEECTTCTTCEEEEEETTBCCGGG-CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE----------------
T ss_pred             CceeecccCcccccceeEEecCCCCcccc-ceEEecccCcceeeeEEEEECCEEEEEEEcCCEe----------------
Confidence            44444433 2    236666776554322 233443 445565555555566666655432211                


Q ss_pred             CCCCeEEEecCCCCCCCCcccccCCCCCCceeeeEecCCCEEEEEecCCCCCcccceeecCCCc
Q 004785          277 YPPPVICMAGAHSSSHPGLAEEVPLITPPFLRPSFVRDDERISLQHTEHDSGATRTQQSLRSSS  340 (730)
Q Consensus       277 ~p~~~V~l~d~~s~d~~~L~~~~~~~slpil~p~FSpDg~rI~~~~~~~dsgs~~~~~~~~ss~  340 (730)
                          .+.+.+...+....+... +.  ..+......+++..+.+.-.+...|.+.+..++.+..
T Consensus       360 ----~l~v~~~~~~~~~~~~~~-~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         360 ----TLQLHDLATGALLKIFPL-EV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             ----EEEEEETTTCCEEEEECC-CS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ----EEEEEECCCCcEEEecCC-CC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence                222222222211111100 00  0112334456778888888899999999999987654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=93.68  E-value=0.44  Score=51.45  Aligned_cols=80  Identities=10%  Similarity=0.071  Sum_probs=56.1

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeE--EEEEcCCCC-E
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-L  205 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~--sVafSPdG~-~  205 (730)
                      +.|.-||+.+|+.+..+... .....-.+.- .+.+++.++.|+.++.+|..+|+.+..+.....+.  -+.|..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            56888999999988766532 2222222333 56788889999999999999999999876544333  356667887 6


Q ss_pred             EEEEE
Q 004785          206 LAVAS  210 (730)
Q Consensus       206 LAsgS  210 (730)
                      |++.+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.50  E-value=4  Score=40.78  Aligned_cols=163  Identities=12%  Similarity=0.073  Sum_probs=90.9

Q ss_pred             CCeEEEEeCCCCC-----C--CCC-----CCCeEEEEE--CCCCC-EEEEEe---CCCeEEEEECCCCe-EE---EEEec
Q 004785           90 AESLHHLRPKYCP-----L--SPP-----PRSTIAAAF--SPDGK-TLASTH---GDHTVKIIDCQTGS-CL---KVLHG  147 (730)
Q Consensus        90 DgsIrlWd~~t~~-----L--~gH-----~~~Vt~laf--SPDG~-~LaSgS---~DgtVrVWDl~tg~-~l---~~l~g  147 (730)
                      .|.|.++|++...     +  .+.     .-....+.+  ..||+ +|++..   ...+|-+|++.... .+   ..+..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4788889876531     1  111     012344443  44665 344432   35678888775432 22   22221


Q ss_pred             -CCCCcEEEEEccCCCCEEEEEe--C-------------CCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-
Q 004785          148 -HRRTPWVVRFHPLNPTIIASGS--L-------------DHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-  210 (730)
Q Consensus       148 -H~~~V~sVafSP~dg~lLaSgS--~-------------DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-  210 (730)
                       .....+.|.+.. ++.+++|-.  .             -++..+|....++.......-...+.|+++||+++|+++. 
T Consensus       147 ~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t  225 (340)
T d1v04a_         147 KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAEL  225 (340)
T ss_dssp             TTCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ccccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeC
Confidence             224467888888 778888731  1             1234455544444433334445689999999999998887 


Q ss_pred             -CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 004785          211 -GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLTA  254 (730)
Q Consensus       211 -dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llatg  254 (730)
                       .++|++|++....... ......-....-.+.+.+++..+.+++
T Consensus       226 ~~~~i~~y~~~~~~~l~-~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         226 LAHKIHVYEKHANWTLT-PLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             GGTEEEEEEECTTSCEE-EEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEEeCCCcccc-eEEEecCCCCCCccEEecCCCEEEEEE
Confidence             4569999987554322 112222344566778876433344443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.21  E-value=0.42  Score=47.38  Aligned_cols=112  Identities=18%  Similarity=0.172  Sum_probs=74.1

Q ss_pred             EEEEECCCCCEEEEEeCC-----------CeEEEEECCCCeEE--EEE-ecCCCCcEEEEEccCCCCEEEEEeCC-CcEE
Q 004785          111 IAAAFSPDGKTLASTHGD-----------HTVKIIDCQTGSCL--KVL-HGHRRTPWVVRFHPLNPTIIASGSLD-HEVR  175 (730)
Q Consensus       111 t~lafSPDG~~LaSgS~D-----------gtVrVWDl~tg~~l--~~l-~gH~~~V~sVafSP~dg~lLaSgS~D-gtVr  175 (730)
                      .......||+.++.|+.+           ..+.+||..+++-.  ... ..|.......++.+ ++.+++.|+.+ .++.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCccee
Confidence            334444567777666642           13778999887532  222 23433445677888 88998888765 5899


Q ss_pred             EEECCCCeEEEE--ecCCCCeEEEEEcCCCCEEEEEEC-------CeEEEEEcCCCc
Q 004785          176 LWNASTAECIGS--RDFYRPIASIAFHASGELLAVASG-------HKLYIWRYNMRE  223 (730)
Q Consensus       176 LWDl~tg~~i~~--l~h~~~V~sVafSPdG~~LAsgSd-------d~I~VWDl~t~~  223 (730)
                      +||..+.+....  .........++..+||++++.|+.       ..+.+||..+.+
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            999998776543  223344567788899999988872       138999988764

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=93.09  E-value=0.25  Score=53.58  Aligned_cols=81  Identities=12%  Similarity=0.073  Sum_probs=56.3

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEE--EEEcCCCC-E
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIAS--IAFHASGE-L  205 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~s--VafSPdG~-~  205 (730)
                      +.|.-||+.+|+.+-.++.... ...-..+- .+.+++.|+.|+.++.+|.++|+.+..+.....+.+  +.|..||+ +
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCC-CCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3577889999998877754322 22112222 567888899999999999999999998775443332  56667887 5


Q ss_pred             EEEEEC
Q 004785          206 LAVASG  211 (730)
Q Consensus       206 LAsgSd  211 (730)
                      +++.++
T Consensus       535 v~v~~G  540 (573)
T d1kb0a2         535 VSVAVG  540 (573)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            555553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.74  E-value=4.4  Score=38.70  Aligned_cols=160  Identities=12%  Similarity=0.004  Sum_probs=96.9

Q ss_pred             eCCCeEEEEeCCCCC----CCCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCC
Q 004785           88 VEAESLHHLRPKYCP----LSPPPRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNP  162 (730)
Q Consensus        88 s~DgsIrlWd~~t~~----L~gH~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg  162 (730)
                      ..++.|+..++....    +......+.++++..-++.|+.+ ...+.|.+.++........+......+..++++|..+
T Consensus        55 ~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g  134 (263)
T d1npea_          55 ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG  134 (263)
T ss_dssp             TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT
T ss_pred             CCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccC
Confidence            445667766665431    22233568899998766666655 4567999999876554444444446789999999555


Q ss_pred             CEEEEEeCCCc--EEEEECCCCeEEEEe-cCCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEEecCCCC
Q 004785          163 TIIASGSLDHE--VRLWNASTAECIGSR-DFYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRTRRS  237 (730)
Q Consensus       163 ~lLaSgS~Dgt--VrLWDl~tg~~i~~l-~h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l~~h~~~  237 (730)
                      .++.+-...+.  |..-++......... ..-....++++++.++.|+....  ++|...|++.....    .+......
T Consensus       135 ~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~----~v~~~~~~  210 (263)
T d1npea_         135 NLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----KVLEGLQY  210 (263)
T ss_dssp             EEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----EEEECCCS
T ss_pred             cEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE----EEECCCCC
Confidence            55555433233  444456543333332 23356789999999998888763  45888888655431    22222234


Q ss_pred             eEEEEEccCCCeEEEE
Q 004785          238 LRAVHFHPHAAPLLLT  253 (730)
Q Consensus       238 V~sVaFSPdG~~Llat  253 (730)
                      ..+|++.  +.+|..+
T Consensus       211 P~~lav~--~~~lYwt  224 (263)
T d1npea_         211 PFAVTSY--GKNLYYT  224 (263)
T ss_dssp             EEEEEEE--TTEEEEE
T ss_pred             cEEEEEE--CCEEEEE
Confidence            5677765  4445554

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.49  E-value=0.94  Score=48.93  Aligned_cols=80  Identities=9%  Similarity=0.103  Sum_probs=54.1

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeE--EEEEcCCCC-E
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIA--SIAFHASGE-L  205 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~--sVafSPdG~-~  205 (730)
                      |.|.-+|+.+|+.+.+...-. ...+-...- .+.+++.++.|+.++-+|.++|+.+..+.....+.  -+.|..||+ |
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            457778888888776654221 111111222 45778889999999999999999999876554443  366777897 6


Q ss_pred             EEEEE
Q 004785          206 LAVAS  210 (730)
Q Consensus       206 LAsgS  210 (730)
                      +++..
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.45  E-value=1.4  Score=46.32  Aligned_cols=167  Identities=8%  Similarity=-0.074  Sum_probs=102.3

Q ss_pred             CCCEEE-EEeCCCeEEEEeCCCCC-----CCCCCCCeEEEEECCCCC--EEEEEeCC------------------CeEEE
Q 004785           80 ARRGLA-SWVEAESLHHLRPKYCP-----LSPPPRSTIAAAFSPDGK--TLASTHGD------------------HTVKI  133 (730)
Q Consensus        80 ~g~~L~-Sgs~DgsIrlWd~~t~~-----L~gH~~~Vt~lafSPDG~--~LaSgS~D------------------gtVrV  133 (730)
                      +|+.|+ .-..+.+|-+.|+++.+     -......+..+...++++  +++..+.+                  +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            455555 44567789999987652     123455677888776544  56655552                  23677


Q ss_pred             EECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCC--------------------------------------cEE
Q 004785          134 IDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDH--------------------------------------EVR  175 (730)
Q Consensus       134 WDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~Dg--------------------------------------tVr  175 (730)
                      +|.++.+....+..- +....+.+++ +++++++.+.+.                                      .+.
T Consensus       178 ID~~tm~V~~QV~V~-g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS-GNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEEES-SCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEeeeC-CChhccccCC-CCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            899998887766533 3466799999 778777766432                                      123


Q ss_pred             EEECCCC---eEEEEecCCCCeEEEEEcCCCCEEEEEE--CCeEEEEEcCCCccc--------cCCeEEecCCCCeEEEE
Q 004785          176 LWNASTA---ECIGSRDFYRPIASIAFHASGELLAVAS--GHKLYIWRYNMREET--------SSPRIVLRTRRSLRAVH  242 (730)
Q Consensus       176 LWDl~tg---~~i~~l~h~~~V~sVafSPdG~~LAsgS--dd~I~VWDl~t~~~~--------~~~~~l~~h~~~V~sVa  242 (730)
                      +-|.++.   ..+..+.-......+.++|||+++++++  +..+.|+|+++-...        ..........-.....+
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence            3443321   1222233334456789999999999998  566999999743221        00001112234556778


Q ss_pred             EccCCC
Q 004785          243 FHPHAA  248 (730)
Q Consensus       243 FSPdG~  248 (730)
                      |+..|.
T Consensus       336 fd~~g~  341 (459)
T d1fwxa2         336 FDGRGN  341 (459)
T ss_dssp             ECTTSE
T ss_pred             cCCCce
Confidence            888774

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.93  E-value=0.77  Score=49.56  Aligned_cols=77  Identities=8%  Similarity=0.112  Sum_probs=48.3

Q ss_pred             cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecC-CCCeEEEEEccCCCeE
Q 004785          173 EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRT-RRSLRAVHFHPHAAPL  250 (730)
Q Consensus       173 tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h-~~~V~sVaFSPdG~~L  250 (730)
                      .|.-||+.+|+.+.......+..+-..+-.|.+|++|+ |+.++.+|.++++++-+...-... ..+   +.|.-||+.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQY  534 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQY  534 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEE
Confidence            57788999999888876554433333344677888887 555999999999976511111111 122   4455688754


Q ss_pred             EE
Q 004785          251 LL  252 (730)
Q Consensus       251 la  252 (730)
                      ++
T Consensus       535 v~  536 (573)
T d1kb0a2         535 VS  536 (573)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.54  E-value=0.36  Score=52.44  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=57.4

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCe--EEEEEcCCCC-E
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGE-L  205 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V--~sVafSPdG~-~  205 (730)
                      |.|.-+|+.+|+.+..+..+.. +..-..+- .+.+++.|+.|+.++-+|.++|+.+..+.....+  .-+.|..+|+ +
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5688899999998877764432 33222333 5678888999999999999999999987654433  2367778996 5


Q ss_pred             EEEEE
Q 004785          206 LAVAS  210 (730)
Q Consensus       206 LAsgS  210 (730)
                      +++..
T Consensus       544 v~i~a  548 (582)
T d1flga_         544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.48  E-value=2.9  Score=43.43  Aligned_cols=104  Identities=15%  Similarity=0.232  Sum_probs=60.9

Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEe--------cCCCCcEEEEEccC---CCCEEEEEe------C
Q 004785          108 RSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGSCLKVLH--------GHRRTPWVVRFHPL---NPTIIASGS------L  170 (730)
Q Consensus       108 ~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg~~l~~l~--------gH~~~V~sVafSP~---dg~lLaSgS------~  170 (730)
                      ..-++|+|.|||++|++--.+|.|++++..+++......        .-.+....|+|+|+   ++.+.++-+      .
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            356799999999988876557999999988776433221        11234678999983   233444322      1


Q ss_pred             C----C--cEEEEECCCCe--E-----E-EEec--CCCCeEEEEEcCCCCEEEEEEC
Q 004785          171 D----H--EVRLWNASTAE--C-----I-GSRD--FYRPIASIAFHASGELLAVASG  211 (730)
Q Consensus       171 D----g--tVrLWDl~tg~--~-----i-~~l~--h~~~V~sVafSPdG~~LAsgSd  211 (730)
                      +    .  .|..+......  .     + ....  ..+....+.|.|||.+.++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    1  13333332221  1     1 1111  2345678999999986666553

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.28  E-value=7.6  Score=39.54  Aligned_cols=171  Identities=6%  Similarity=-0.033  Sum_probs=104.0

Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEeCCC-----------CCCC--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 004785           73 IFEAGRDARRGLASWVEAESLHHLRPKY-----------CPLS--PPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTG  139 (730)
Q Consensus        73 ll~a~~d~g~~L~Sgs~DgsIrlWd~~t-----------~~L~--gH~~~Vt~lafSPDG~~LaSgS~DgtVrVWDl~tg  139 (730)
                      .+.+....++.++.++.++ +.+...+.           ..+.  ..-..|..++|+-|  .|+.. .++.+..++..+-
T Consensus        40 ~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~l  115 (381)
T d1xipa_          40 QNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEEL  115 (381)
T ss_dssp             BCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSST
T ss_pred             ceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeecc
Confidence            3445556666777777665 45554321           0111  11125889999744  45554 4567888887765


Q ss_pred             eEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEE------ecCCCCeEEEEEcCCCCEEEEEECCe
Q 004785          140 SCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGS------RDFYRPIASIAFHASGELLAVASGHK  213 (730)
Q Consensus       140 ~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~------l~h~~~V~sVafSPdG~~LAsgSdd~  213 (730)
                      ........-...+..+.++|   ..++....++.+.++++..++....      +.-.+.+.+++|++.|+.++++.++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~  192 (381)
T d1xipa_         116 SEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE  192 (381)
T ss_dssp             TCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE
T ss_pred             ccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc
Confidence            44444444456678888877   5567778899999999998864332      22346788999999999888886655


Q ss_pred             EEEE-EcCCCccccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 004785          214 LYIW-RYNMREETSSPRIVLRTRRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       214 I~VW-Dl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~Llat  253 (730)
                      ..+- ++........   .......|.+|.|-.+..++++-
T Consensus       193 ~q~k~~i~~~~~~~~---p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         193 MEKQFEFSLPSELEE---LPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEEECCCHHHHT---SCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eeeccCCCCccccCC---CcCCCcceeEEEEecCceEEEEE
Confidence            4332 2222222110   01234468899998776655443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=6.4  Score=37.44  Aligned_cols=142  Identities=9%  Similarity=-0.010  Sum_probs=91.3

Q ss_pred             CCCeEEEEECCCCCEEEEE-eCCCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEE-eCCCcEEEEECCCCeE
Q 004785          107 PRSTIAAAFSPDGKTLAST-HGDHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASG-SLDHEVRLWNASTAEC  184 (730)
Q Consensus       107 ~~~Vt~lafSPDG~~LaSg-S~DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSg-S~DgtVrLWDl~tg~~  184 (730)
                      ...+.++++...++.|+.+ ...+.|.+.++........+.........++++|..+.++.+- +..+.|...++.....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            3456788888766666555 4567899999887665555666667789999999555555553 2345677777765444


Q ss_pred             EEEec-CCCCeEEEEEcCCCCEEEEEEC--CeEEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEE
Q 004785          185 IGSRD-FYRPIASIAFHASGELLAVASG--HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLT  253 (730)
Q Consensus       185 i~~l~-h~~~V~sVafSPdG~~LAsgSd--d~I~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPdG~~Llat  253 (730)
                      ..... .-....++++++.++.|+.+..  +.|...|+.......   .....  .....++++.  +.+|..+
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~---~~~~~~~~~~p~~lav~--~~~ly~t  224 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT---ILEDEKRLAHPFSLAVF--EDKVFWT  224 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EEECTTTTSSEEEEEEE--TTEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEE---EEeCCCcccccEEEEEE--CCEEEEE
Confidence            44433 3356789999999998888763  458888886654211   22222  2345567665  3445544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.25  E-value=3.1  Score=41.59  Aligned_cols=120  Identities=14%  Similarity=0.153  Sum_probs=86.1

Q ss_pred             CCeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEE
Q 004785          128 DHTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPIASIAFHASGELLA  207 (730)
Q Consensus       128 DgtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LA  207 (730)
                      ...|.|.|+.++.....-.-   .-.+.-.+| ..++++--+ ..++.++|+++.+.++.+.....|.--.|-. .+.|+
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC---CCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEE
T ss_pred             CceEEEEECCCCCcceeccc---chhhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEE
Confidence            34788889977553221111   123466789 778777655 5589999999999999999888898888864 46788


Q ss_pred             EEECCeEEEEEcCCCccccCCeEEecC----CCCeEEEEEccCCCeEEEEEe
Q 004785          208 VASGHKLYIWRYNMREETSSPRIVLRT----RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       208 sgSdd~I~VWDl~t~~~~~~~~~l~~h----~~~V~sVaFSPdG~~Llatgs  255 (730)
                      ..++..|+-|++.....  +...+..|    ...|..-..+++.++++..|=
T Consensus       118 lVT~taVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI  167 (327)
T d1utca2         118 LVTDNAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGI  167 (327)
T ss_dssp             EECSSEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEE
T ss_pred             EEcCCceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEEEEEeE
Confidence            88888999999965432  22233334    457888889999999887663

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.77  E-value=1  Score=48.70  Aligned_cols=79  Identities=9%  Similarity=-0.022  Sum_probs=48.5

Q ss_pred             CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       172 gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      |.|.-+|+.+|+.+..........+-...-.|.++++++ |+.++.+|.++++++-+  ........-.-+.|..||+.+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~--~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN--FKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEE--EECCCCceecceEEEECCEEE
Confidence            468888999999888766444333222333466777777 55699999999987541  112221222225566689755


Q ss_pred             EE
Q 004785          251 LL  252 (730)
Q Consensus       251 la  252 (730)
                      ++
T Consensus       522 i~  523 (571)
T d2ad6a1         522 IG  523 (571)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=90.41  E-value=1.1  Score=48.17  Aligned_cols=79  Identities=6%  Similarity=0.082  Sum_probs=50.0

Q ss_pred             CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       172 gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      |.|.-||+.+|+.+..+.......+-.+.-.|.+++.|+ ++.++.+|.++++++-.  ........-.-+.|.-||+.+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~--~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ--FEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE--EECCCCccccCEEEEECCEEE
Confidence            468889999999988876555444333444567777777 55699999999987641  111111111124556688754


Q ss_pred             EE
Q 004785          251 LL  252 (730)
Q Consensus       251 la  252 (730)
                      ++
T Consensus       516 v~  517 (560)
T d1kv9a2         516 VA  517 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.27  E-value=1.1  Score=46.06  Aligned_cols=102  Identities=11%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             cEEEEEccCCCCEEE-EEeCCC----cEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-C--------------
Q 004785          152 PWVVRFHPLNPTIIA-SGSLDH----EVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-G--------------  211 (730)
Q Consensus       152 V~sVafSP~dg~lLa-SgS~Dg----tVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-d--------------  211 (730)
                      +....++| ++++++ +-+.+|    +|+++|+.+++.+...-.......++|.+|++.|+... +              
T Consensus       127 ~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecC-CCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            34567899 666555 444333    69999999998765321122235689999999776543 1              


Q ss_pred             --CeEEEEEcCCCccccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 004785          212 --HKLYIWRYNMREETSSPRIVLRT--RRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       212 --d~I~VWDl~t~~~~~~~~~l~~h--~~~V~sVaFSPdG~~Llatgs  255 (730)
                        ..|+.|.+.+..... .......  ...+..+..+.++++++....
T Consensus       206 ~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~  252 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (430)
T ss_dssp             CCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             CcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEee
Confidence              137777777664432 1222222  234667888999999887654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.08  E-value=4.8  Score=43.06  Aligned_cols=79  Identities=8%  Similarity=0.058  Sum_probs=51.7

Q ss_pred             CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       172 gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      |.|.-+|+.+|+.+..+....++.+-..+-.|.+++.|+ |+.++.+|..+++++-.  ........-.-+.|..+|+.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~--~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK--FQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEE--EECCCCccccCEEEEECCEEE
Confidence            568889999999988876555554433445677888887 55699999999998651  112221111225667789754


Q ss_pred             EE
Q 004785          251 LL  252 (730)
Q Consensus       251 la  252 (730)
                      ++
T Consensus       544 v~  545 (582)
T d1flga_         544 LG  545 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.19  E-value=2.9  Score=45.22  Aligned_cols=79  Identities=8%  Similarity=0.009  Sum_probs=49.8

Q ss_pred             CcEEEEECCCCeEEEEecCCCCeEEEEEcCCCCEEEEEE-CCeEEEEEcCCCccccCCeEEecCCCCeEEEEEccCCCeE
Q 004785          172 HEVRLWNASTAECIGSRDFYRPIASIAFHASGELLAVAS-GHKLYIWRYNMREETSSPRIVLRTRRSLRAVHFHPHAAPL  250 (730)
Q Consensus       172 gtVrLWDl~tg~~i~~l~h~~~V~sVafSPdG~~LAsgS-dd~I~VWDl~t~~~~~~~~~l~~h~~~V~sVaFSPdG~~L  250 (730)
                      |.|.-||+.+|+.+....+...+.+-.++-.|.+++.|+ |+.++.+|.++++.+-+.  -......-.-+.|.-||+..
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~--~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF--KIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE--ECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEE--ECCCCcccCCeEEEECCEEE
Confidence            468889999999887766555444434444677888887 556999999999976511  11111111123455688755


Q ss_pred             EE
Q 004785          251 LL  252 (730)
Q Consensus       251 la  252 (730)
                      ++
T Consensus       531 va  532 (596)
T d1w6sa_         531 VA  532 (596)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.00  E-value=13  Score=37.43  Aligned_cols=169  Identities=8%  Similarity=0.045  Sum_probs=95.5

Q ss_pred             EEeCCCeEEEEeCCCCCCCC-CCCCeEEEEEC------CCCCEEEEEeC--C--CeEEEEECCC-CeEEEEEecC-----
Q 004785           86 SWVEAESLHHLRPKYCPLSP-PPRSTIAAAFS------PDGKTLASTHG--D--HTVKIIDCQT-GSCLKVLHGH-----  148 (730)
Q Consensus        86 Sgs~DgsIrlWd~~t~~L~g-H~~~Vt~lafS------PDG~~LaSgS~--D--gtVrVWDl~t-g~~l~~l~gH-----  148 (730)
                      .-.+.+-|.+||++-..+.. ..+.++.+..-      -+...|+.+++  +  .+|.+|.+.. ...+..+...     
T Consensus        45 gTdK~~Gl~vYdL~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~  124 (353)
T d1h6la_          45 TTNKKSGLAVYSLEGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIA  124 (353)
T ss_dssp             EEETTSCCEEEETTCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEE
T ss_pred             EEcCcCCEEEEcCCCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccccccccc
Confidence            33344458888876433221 12456655543      22234566664  2  3677887742 3334444321     


Q ss_pred             --CCCcEEEEE--ccCCCC-EEEEEeCCCcEEEEECC---CC----eEEEEecCCCCeEEEEEcCCCCEEEEEECCe-EE
Q 004785          149 --RRTPWVVRF--HPLNPT-IIASGSLDHEVRLWNAS---TA----ECIGSRDFYRPIASIAFHASGELLAVASGHK-LY  215 (730)
Q Consensus       149 --~~~V~sVaf--SP~dg~-lLaSgS~DgtVrLWDl~---tg----~~i~~l~h~~~V~sVafSPdG~~LAsgSdd~-I~  215 (730)
                        ...++.+++  ++.++. +++....+|.+..|.+.   .+    +.++.+.....+..+.++.....|+++-.+. |+
T Consensus       125 ~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw  204 (353)
T d1h6la_         125 SAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIW  204 (353)
T ss_dssp             CSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred             cccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceE
Confidence              224677777  664555 45666778988888663   33    3455677788999999999999999998544 76


Q ss_pred             EEEcCCCccccCCeEEe----cCCCCeEEEEEc--cCCC-eEEEEE
Q 004785          216 IWRYNMREETSSPRIVL----RTRRSLRAVHFH--PHAA-PLLLTA  254 (730)
Q Consensus       216 VWDl~t~~~~~~~~~l~----~h~~~V~sVaFS--PdG~-~Llatg  254 (730)
                      .+++.............    .....+..|+.-  .++. +|++++
T Consensus       205 ~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSs  250 (353)
T d1h6la_         205 KFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASS  250 (353)
T ss_dssp             EEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             EEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEc
Confidence            66665332211111111    124567777654  3444 555554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.55  E-value=1.7  Score=42.73  Aligned_cols=93  Identities=10%  Similarity=0.160  Sum_probs=58.9

Q ss_pred             CCCEEEEEeCCC-----------cEEEEECCCCeEEEE----ecCCCCeEEEEEcCCCCEEEEEECC--eEEEEEcCCCc
Q 004785          161 NPTIIASGSLDH-----------EVRLWNASTAECIGS----RDFYRPIASIAFHASGELLAVASGH--KLYIWRYNMRE  223 (730)
Q Consensus       161 dg~lLaSgS~Dg-----------tVrLWDl~tg~~i~~----l~h~~~V~sVafSPdG~~LAsgSdd--~I~VWDl~t~~  223 (730)
                      ++++++.|+.+.           .+.+||..+++....    ..+.......++.++|++++.|+.+  .+.+||..+..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc
Confidence            677777766421           377899998764322    2233334567899999999988743  49999998775


Q ss_pred             cccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 004785          224 ETSSPRIVLRTRRSLRAVHFHPHAAPLLLTAE  255 (730)
Q Consensus       224 ~~~~~~~l~~h~~~V~sVaFSPdG~~Llatgs  255 (730)
                      -....  .......-...+..+||+.++..+.
T Consensus       110 w~~~~--~~~~~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3         110 WIPGP--DMQVARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             EEECC--CCSSCCSSCEEEECTTSCEEEECCC
T ss_pred             ccccc--cccccccccceeeecCCceeeeccc
Confidence            43211  1112233356777889997766654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.76  E-value=1.4  Score=47.90  Aligned_cols=80  Identities=14%  Similarity=0.164  Sum_probs=54.6

Q ss_pred             CeEEEEECCCCeEEEEEecCCCCcEEEEEccCCCCEEEEEeCCCcEEEEECCCCeEEEEecCCCCe--EEEEEcCCCC-E
Q 004785          129 HTVKIIDCQTGSCLKVLHGHRRTPWVVRFHPLNPTIIASGSLDHEVRLWNASTAECIGSRDFYRPI--ASIAFHASGE-L  205 (730)
Q Consensus       129 gtVrVWDl~tg~~l~~l~gH~~~V~sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~i~~l~h~~~V--~sVafSPdG~-~  205 (730)
                      +.|.-||..+|+.+-.... ...+..-.++- .+.+++.|+.|+.++.+|.++|+.+..+.....+  .-+.|..||+ |
T Consensus       453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKME-RFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCC-CCCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            5688889999988765532 22222222333 5678888999999999999999999987644332  2356667887 5


Q ss_pred             EEEEE
Q 004785          206 LAVAS  210 (730)
Q Consensus       206 LAsgS  210 (730)
                      +++..
T Consensus       531 vav~~  535 (596)
T d1w6sa_         531 VAIYY  535 (596)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55543