Citrus Sinensis ID: 004802

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73
MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEcEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccEEEEccccccccccccccEEEccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEcEEEEEEEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEEccccccHHHcHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEccccccEEcccccccccEEccccccccccccccEcccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccEcccccccccccccccccccccccccccccccccccccHHcc
mgdlrdwspepngavfgerpssssssvpsnqtaiGAEYWQRAEEATQGIIaqvqptvvseERRKAVIDYVQRLIRNYLgcevfpfgsvplktylpdgdidltafgglnVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDisfnqlgglstlcfLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFhsslngplAVLYKFLDYfskfdwdsycislngpvrisslpevvvetpensggdlllSSEFLKECVEqfsvpsrgfdtnsrsfppkhlnivdplkennnlgrsvskgnfyRIRSAFTYGARKlghilsqpeesLTDELRKFFSNTldrhgsgqrpdvqdpvplsryngfgvsstfsgtelcredqtiyesepnssgitencriddeaelcggvgkikvsgmessycrtinephnsgngtavsetrlsgdakdlatsknLNLVISNEtskcsslsgeeskarhaphlyfssstmgngeirngnSEWKQQLnsgsaeknvtsgilpthyketglillngqdenqldvnhgasspvesnhhpslmstipwsteefnfsysgyhasprtvgspraanslsdlsgdyeshqISLNHVWWWYEHalnssyspmspqllsQFQSKNSWDLMQRSlpfrrniipqmsangavprplfypmtppmlpgasfgmeempkhrgtgtyfpntvylf
mgdlrdwspepngavfgerpssssssvpsNQTAIGAEYWQRAEEATQGIIAqvqptvvseerrKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVpsrgfdtnsrsfppkhlnivdplkennnlgrsvskgnfyRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNtldrhgsgqrpdvqdpvplSRYNGFGVSSTFSGTELCREDQtiyesepnssgitenCRIDDEAELCGGVGKIKVSGMESSYCRTinephnsgngtaVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRgtgtyfpntvylF
MGDLRDWSPEPNGAVFGERpssssssvpsNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
*********************************IGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVET****GGDLLLSSEFLKECVEQFS********************************SVSKGNFYRIRSAFTYGARKLGHIL**************************************YNGFGVSSTFSGTELC******************NCRIDDEAELCGGVGKIKVSGME*SYC**********************************************************************************************GILPTHYKETGLILLN******************************WSTEEFNFSYSG*************************SHQISLNHVWWWYEHALNS********************LM***LPFRRNIIP**********PLFY*************************YFP******
**************************************WQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTL*******************************************************************************************************************************************************************************************************************************************************************QISLNHVWWWYEHA**********************************IIPQMSANGAVPRPLFYPMTP****************RGTGTYFPNTVYL*
MGDLRDWSPEPNGAVF***************TAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNE***************HAPHLYFSSSTMGNGEIRNGNSEWK***********VTSGILPTHYKETGLILLNGQDENQLDVNH***********PSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
*******************************TAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYES************************************************T******LSGDAKDLATSKNL********SKCSS*****SKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHAS*RTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSSGITENCRIDDEAELCGGVGKIKVSGMESSYCRTINEPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKARHAPHLYFSSSTMGNGEIRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNHHPSLMSTIPWSTEEFNFSYSGYHASPRTVGSPRAANSLSDLSGDYESHQISLNHVWWWYEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPPMLPGASFGMEEMPKHRGTGTYFPNTVYLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query729 2.2.26 [Sep-21-2011]
Q9UTN3684 Poly(A) RNA polymerase ci yes no 0.277 0.295 0.252 3e-05
Q5XG87542 DNA polymerase sigma OS=H yes no 0.337 0.453 0.232 7e-05
Q6PB75542 DNA polymerase sigma OS=M yes no 0.337 0.453 0.232 9e-05
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid14 PE=1 SV=2 Back     alignment and function desciption
 Score = 51.2 bits (121), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 20/222 (9%)

Query: 49  IIAQVQPTVVSEERRKAVIDYV-QRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
            I  + PT      RK ++  + Q +++ +    ++ FGS   K YLP  D+DL      
Sbjct: 248 FIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPE 307

Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCL--VQNIVVDISFNQLG 164
           +       D+  +     + K A     + Q+I  A V ++K +  +  + VDISFNQ G
Sbjct: 308 HHYRGTKKDMFVLAHHLKKLKLAS----EVQVITTANVPIIKFVDPLTKVHVDISFNQPG 363

Query: 165 GLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFH 224
           GL T C +  V+  + K    +  +I+IK +    + +     G +S+YA+  LV+    
Sbjct: 364 GLKT-CLV--VNGFMKKYPALRPLVIIIKHFLNMRA-LNEVFLGGLSSYAIVCLVVSFLQ 419

Query: 225 LFHSSLNGPL-------AVLYKFLDYFSK-FDWDSYCISLNG 258
           L      G +        +L +FL+ + K F +D+  I+++ 
Sbjct: 420 LHPRLSTGSMREEDNFGVLLLEFLELYGKQFYYDAVGIAVHN 461
Required for 3' polyadenylation of the 5.8S and 25S rRNAs as a prelude ot their degradation in the exosome. Involved in the nucleolar organization to ensure faithful chromosome segregation during mitosis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2 Back     alignment and function description
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query729
359481238 884 PREDICTED: uncharacterized protein LOC10 0.973 0.803 0.602 0.0
449449962 898 PREDICTED: uncharacterized protein LOC10 0.982 0.797 0.610 0.0
297735556824 unnamed protein product [Vitis vinifera] 0.908 0.803 0.594 0.0
297816424829 hypothetical protein ARALYDRAFT_485514 [ 0.890 0.782 0.597 0.0
79597803829 NT domain of poly(A) polymerase and term 0.890 0.782 0.590 0.0
449526634816 PREDICTED: uncharacterized LOC101207419 0.872 0.779 0.598 0.0
359478494 854 PREDICTED: uncharacterized protein LOC10 0.949 0.810 0.521 1e-178
147817122 1147 hypothetical protein VITISV_017634 [Viti 0.736 0.468 0.564 1e-169
30693508755 NT domain of poly(A) polymerase and term 0.806 0.778 0.503 1e-166
6572083764 putative protein [Arabidopsis thaliana] 0.806 0.769 0.503 1e-166
>gi|359481238|ref|XP_002266958.2| PREDICTED: uncharacterized protein LOC100258499 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/747 (60%), Positives = 529/747 (70%), Gaps = 37/747 (4%)

Query: 1   MGDLRDWSPEPNGAVFGERPSSSSSSVPSNQTAIGAEYWQRAEEATQGIIAQVQPTVVSE 60
           MGDLR  SPEP G    +R     S    N  AIGA  W RAE   Q II +VQPT VSE
Sbjct: 1   MGDLRACSPEPRGLFTDDRLLPLPSLSHPNPPAIGAAQWARAENTVQEIICEVQPTEVSE 60

Query: 61  ERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALANDVCSV 120
           ERRK V+DYVQ LIR  +GCEVFPFGSVPLKTYLPDGDIDLTAFGG  VE+ LA +V SV
Sbjct: 61  ERRKEVVDYVQGLIRVRVGCEVFPFGSVPLKTYLPDGDIDLTAFGGPAVEDTLAYEVYSV 120

Query: 121 LEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLSTLCFLEQVDRLIG 180
           LE EDQN+AAEFVVKD QLI AEVKLVKCLVQNIVVDISFNQLGGL TLCFLEQ+DRLIG
Sbjct: 121 LEAEDQNRAAEFVVKDVQLIHAEVKLVKCLVQNIVVDISFNQLGGLCTLCFLEQIDRLIG 180

Query: 181 KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKF 240
           KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIF LFHS LNGPLAVLYKF
Sbjct: 181 KDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFLLFHSLLNGPLAVLYKF 240

Query: 241 LDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRG 300
           LDYFSKFDWD+YC+SLNGPVRISSLPE++ ETPEN G D LL+++ L++C+++FSVPSRG
Sbjct: 241 LDYFSKFDWDNYCVSLNGPVRISSLPEMIAETPENVGADPLLNNDILRDCLDRFSVPSRG 300

Query: 301 FDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGHILSQPEESLT 360
            +TNSR+F  KH NIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLG IL QPE+ ++
Sbjct: 301 LETNSRTFVQKHFNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARKLGRILLQPEDKIS 360

Query: 361 DELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGVSSTFSGTELCREDQTIYESEPNSS 420
           +EL KFF+NTL+RHG GQRPDV D +P+S  +GFG +S+ S  E   E + +  +  +S 
Sbjct: 361 EELCKFFTNTLERHGRGQRPDV-DLIPVSCSDGFGFASSISDLEFQEEKRILEVNYTDSR 419

Query: 421 GITENCRIDDEAELCGGVGKIKVSGMESSYCR------------TINEPHNSGNGTAVSE 468
            IT    +D E  +C GV  +K+SG E                  ++E  NS N  AVS 
Sbjct: 420 SITGESELDAERSMCDGVNCVKISGTELGMSNPQRGSKQVVPTSMLSEADNSSNAPAVSG 479

Query: 469 TRLSGDAKDLATSKNLNLVISNETSKCSSLSGEES------KARHAPHLYFSSSTMGNGE 522
            R+SGDAKDLA+ +     ISN+TSK S  SGEES      KA  APHLYFS S   NG+
Sbjct: 480 FRISGDAKDLASPRIRGPKISNDTSKSSPPSGEESVSVLSKKAHFAPHLYFSRSAQ-NGK 538

Query: 523 IRNGNSEWKQQLNSGSAEKNVTSGILPTHYKETGLILLNGQDENQLDVNHGASSPVESNH 582
            RN N + K   NSG +E            +E+  ++ +G + NQ   NH   +   SN 
Sbjct: 539 ERNENLDKKLAGNSGLSE------------EESSFVVHHGLNGNQSVNNHELLNSFVSND 586

Query: 583 HPSLMSTIPWSTEEFNFSYSGYHASPRT--VGSPRAANSLSDLSGDYESHQISLNHVWWW 640
            P  +S    S+E   + ++G    P +   G+P A NSL+DLSGDY+SH  SL + WW 
Sbjct: 587 VPPGLSPTACSSE---YLHTGNWDRPSSGNSGNPEAPNSLADLSGDYDSHFNSLQYGWWC 643

Query: 641 YEHALNSSYSPMSPQLLSQFQSKNSWDLMQRSLPFRRNIIPQMSANGAVPRPLFYPMTPP 700
           Y++   +    M   L SQFQS NSWD +Q+S   RRNI PQ++ANG +PRP FYP+ PP
Sbjct: 644 YDYIFGAPALSMPVALPSQFQSNNSWDAIQQSAHIRRNIFPQITANGIIPRPPFYPLNPP 703

Query: 701 MLPGASFGMEEMPKHRGTGTYFPNTVY 727
           M+ G  FG+EEMPK RGTGTYFPNT +
Sbjct: 704 MISGTGFGVEEMPKPRGTGTYFPNTSH 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449449962|ref|XP_004142733.1| PREDICTED: uncharacterized protein LOC101207419 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297735556|emb|CBI18050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297816424|ref|XP_002876095.1| hypothetical protein ARALYDRAFT_485514 [Arabidopsis lyrata subsp. lyrata] gi|297321933|gb|EFH52354.1| hypothetical protein ARALYDRAFT_485514 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79597803|ref|NP_850678.2| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] gi|332645293|gb|AEE78814.1| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449526634|ref|XP_004170318.1| PREDICTED: uncharacterized LOC101207419 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359478494|ref|XP_002276607.2| PREDICTED: uncharacterized protein LOC100253523 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147817122|emb|CAN62161.1| hypothetical protein VITISV_017634 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30693508|ref|NP_190730.2| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] gi|332645292|gb|AEE78813.1| NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|6572083|emb|CAB63026.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query729
TAIR|locus:2081885 829 AT3G51620 "AT3G51620" [Arabido 0.670 0.589 0.675 7.1e-204
TAIR|locus:2076795 1303 AT3G61690 [Arabidopsis thalian 0.521 0.291 0.570 4e-124
TAIR|locus:2078426603 AT3G56320 [Arabidopsis thalian 0.480 0.580 0.603 6.6e-121
TAIR|locus:2061868502 AT2G40520 "AT2G40520" [Arabido 0.478 0.695 0.507 6.2e-98
TAIR|locus:2164047530 AT5G53770 "AT5G53770" [Arabido 0.246 0.339 0.247 2.3e-07
POMBASE|SPCC663.12336 cid12 "poly(A) polymerase Cid1 0.277 0.601 0.267 1.8e-06
TAIR|locus:2063937511 HESO1 "HEN1 suppressor 1" [Ara 0.362 0.516 0.261 2.6e-06
POMBASE|SPAC12G12.13c684 cid14 "poly(A) polymerase Cid1 0.272 0.290 0.276 6.6e-06
TAIR|locus:2081885 AT3G51620 "AT3G51620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1636 (581.0 bits), Expect = 7.1e-204, Sum P(2) = 7.1e-204
 Identities = 339/502 (67%), Positives = 385/502 (76%)

Query:    37 EYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRNYLGCEVFPFGSVPLKTYLPD 96
             E W R EEAT+ II QV PT+VSE+RR+ VI YVQ+LIR  LGCEV  FGSVPLKTYLPD
Sbjct:    32 ELWMRVEEATREIIEQVHPTLVSEDRRRDVILYVQKLIRMTLGCEVHSFGSVPLKTYLPD 91

Query:    97 GDIDLTAFGGLNVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVV 156
             GDIDLTAFGGL  EE LA  V +VLERE+ N +++FVVKD QLIRAEVKLVKCLVQNIVV
Sbjct:    92 GDIDLTAFGGLYHEEELAAKVFAVLEREEHNLSSQFVVKDVQLIRAEVKLVKCLVQNIVV 151

Query:   157 DISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALE 216
             DISFNQ+GG+ TLCFLE++D LIGKDHLFKRSIILIKAWCYYESRILGA HGLISTYALE
Sbjct:   152 DISFNQIGGICTLCFLEKIDHLIGKDHLFKRSIILIKAWCYYESRILGAFHGLISTYALE 211

Query:   217 TLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVRISSLPEVVVETPENS 276
             TLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPV +SSLP++VVETPEN 
Sbjct:   212 TLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFDWDSYCISLNGPVCLSSLPDIVVETPENG 271

Query:   277 GGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYR 336
             G DLLL+SEFLKEC+E +SVPSRGF+TN R F  KHLNIVDPLKE NNLGRSVSKGNFYR
Sbjct:   272 GEDLLLTSEFLKECLEMYSVPSRGFETNPRGFQSKHLNIVDPLKETNNLGRSVSKGNFYR 331

Query:   337 IRSAFTYGARKLGHILSQPEESLTDELRKFFSNTLDRHGSGQRPDVQDPVPLSRYNGFGV 396
             IRSAFTYGARKLG +  Q +E+++ ELRKFFSN L RHGSGQRPDV D +P  RYN +  
Sbjct:   332 IRSAFTYGARKLGQLFLQSDEAISSELRKFFSNMLLRHGSGQRPDVHDAIPFLRYNRY-- 389

Query:   397 SSTFSGTELCREDQTIYESEPNSS-GITENCRIDDEAELCGGVGKIKVSGMESSYCRTIN 455
             ++    +   +E Q + ESE +SS G T N R D E  L  GV     +G + S      
Sbjct:   390 NAILPASNHFQEGQVVNESESSSSSGATGNGRHDQEDSLDAGVSIPSTTGPDLS-----G 444

Query:   456 EPHNSGNGTAVSETRLSGDAKDLATSKNLNLVISNETSKCSSLSGEESKAR-HAPHLYFS 514
              P  +    +VSE R SGDAKDLAT +   L IS++  K   LS +ES +  +  H  F+
Sbjct:   445 SPGETV--PSVSEERFSGDAKDLATLRIQKLEISDDAMKSPCLSDKESDSPLNGKHHSFN 502

Query:   515 SSTMGNGEIRNGNSEWKQQLNS 536
                M NGE+ NGN   KQQ NS
Sbjct:   503 Q--MRNGEVLNGNGVGKQQENS 522
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2076795 AT3G61690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078426 AT3G56320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061868 AT2G40520 "AT2G40520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164047 AT5G53770 "AT5G53770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC663.12 cid12 "poly(A) polymerase Cid12" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2063937 HESO1 "HEN1 suppressor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC12G12.13c cid14 "poly(A) polymerase Cid14" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query729
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 1e-13
COG5260482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 7e-10
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 0.004
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information 
 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 11/110 (10%)

Query: 62  RRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVEEALA--NDVC 118
           +R+ V+D +Q LI+  + G +++PFGS      LP  DIDL   G  +  +       + 
Sbjct: 1   KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLA 60

Query: 119 SVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQ--NIVVDISFNQLGGL 166
            +L++         VV+   +I A V ++K + +   I VDISFN L G+
Sbjct: 61  KLLKKS------GEVVEVEPIINARVPIIKFVDKPTGIEVDISFNNLNGI 104

Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Length = 114
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 729
KOG1906514 consensus DNA polymerase sigma [Replication, recom 100.0
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
PTZ00418593 Poly(A) polymerase; Provisional 99.97
KOG2245562 consensus Poly(A) polymerase and related nucleotid 99.95
KOG2277596 consensus S-M checkpoint control protein CID1 and 99.91
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.86
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.82
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.78
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.75
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.75
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.65
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 98.6
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 98.05
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 98.01
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.69
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.54
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.51
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 97.43
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.32
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.91
COG166997 Predicted nucleotidyltransferases [General functio 96.36
PRK13746262 aminoglycoside resistance protein; Provisional 95.9
COG1708128 Predicted nucleotidyltransferases [General functio 95.44
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 95.04
KOG2054 1121 consensus Nucleolar RNA-associated protein (NRAP) 94.14
KOG3793362 consensus Transcription factor NFAT, subunit NF45 92.61
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 91.83
PF14091152 DUF4269: Domain of unknown function (DUF4269) 90.84
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 89.7
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 89.03
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 81.03
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-43  Score=391.87  Aligned_cols=271  Identities=32%  Similarity=0.528  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhcCCCceEeeccccCCCCCCCCceEEEecC-CCcchHHHHHHH
Q 004802           41 RAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIR-NYLGCEVFPFGSVPLKTYLPDGDIDLTAFGG-LNVEEALANDVC  118 (729)
Q Consensus        41 ~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~-~~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~-~~~~~~l~~~V~  118 (729)
                      .++++|..|+++|.||++|.+.|..++++|+++|+ +||.|.|++|||+.||||||+|||||+|+.. ...++.....+.
T Consensus        62 ~l~~eI~~fv~~l~pt~~e~~~R~~~~~~i~~~v~~~~~~a~v~~FGS~~tglyLP~sDIDl~v~~~~~~~~e~~~~~~~  141 (514)
T KOG1906|consen   62 RLRNEILDFVQYLIPTPEEIEVRSELVEKIRDVVKQKWPDASVYVFGSVPTGLYLPDSDIDLVVLSKFLNDKEDRAVKLE  141 (514)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcccceeEEeeeeeccccccccceEEEEecccccCchhhHHHHH
Confidence            46789999999999999999999999999999999 5999999999999999999999999999998 555565555665


Q ss_pred             HHHHHHhhccccccceEEEEEE-ecceeeEEEee--CCeEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHHHHHHHHH
Q 004802          119 SVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRSIILIKAW  195 (729)
Q Consensus       119 ~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~--~gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp~fr~LvlLIK~W  195 (729)
                      .+++.++.  ...+   .|.+| +||||||||++  .+|.||||||+.+|++++.|+   ..++.++|.++++++++|+|
T Consensus       142 l~~~~e~~--~~~~---~v~~v~karvpiik~~d~~s~i~vDISFn~~~G~~aa~~i---~~~~~~~p~~~~lvlvlk~f  213 (514)
T KOG1906|consen  142 LALELEED--NSAF---HVKVVQKARVPIIKFKDPVSNIHVDISFNQTNGVKAAKFI---KDFLRDHPFLRSLVLVLKQF  213 (514)
T ss_pred             HHHhhhhc--cccc---eEEEeeeeeeeeEEeecCccceEEEeeecccCchhHHHHH---HHHHhcCccchhHHHHHHHH
Confidence            55554331  2233   45567 89999999997  499999999999999999887   55678899999999999999


Q ss_pred             HHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCCC------CchH-HHHHHhhccc-ccccccceEEccCCcccCCCCc
Q 004802          196 CYYESRILGAHHGLISTYALETLVLYIFHLFHSSLN------GPLA-VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPE  267 (729)
Q Consensus       196 ak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~psl~------~pLg-LL~~FFeyYs-~FDw~~~~ISI~GPV~lssLp~  267 (729)
                      + ++|++|++++|||+||+|++|+++|||+++-...      ..++ +|++||++|| +|++++.+|++..+        
T Consensus       214 l-~~r~ln~v~tGgisSyal~~Lv~~fl~l~~~~~s~~~~~~~~~~vll~~f~e~yG~~f~~~k~~i~~~~~--------  284 (514)
T KOG1906|consen  214 L-YERRLNGVHTGGISSYALELLVLSFLQLHPRSKSGRLAVLKNLGVLLIKFFELYGRNFGYDKLGISLSLG--------  284 (514)
T ss_pred             H-HhhcccccccccchHHHHHHHHHHHHhhcccccCCccchhcccchHHHHHHHHhccccCchhhceeccCC--------
Confidence            9 5999999999999999999999999998653322      2355 6799999999 79999999987522        


Q ss_pred             cccccCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHHHHHHHHH
Q 004802          268 VVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFTYGARK  347 (729)
Q Consensus       268 ~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~aF~~Aa~~  347 (729)
                                ++++. ++..+...            + ...++..|+||||.+|.||+||+.+  ++.+|+.+|.+|+..
T Consensus       285 ----------g~~~~-~~~~~~~~------------~-~~~~~~~LsieDP~~P~ndigr~s~--~~~~v~~~F~~af~~  338 (514)
T KOG1906|consen  285 ----------GEYVS-KELTGFFN------------N-SLERPGSLSIEDPVDPTNDIGRSSF--NFSQVKGAFAYAFKV  338 (514)
T ss_pred             ----------ccccc-HHhhhhhc------------c-cccCCCccccCCCCCcccccccccc--cHHHHHHHHHHHHHH
Confidence                      22222 22221111            0 1123566999999999999999996  799999999999999


Q ss_pred             HHhhhcC
Q 004802          348 LGHILSQ  354 (729)
Q Consensus       348 L~~il~~  354 (729)
                      |......
T Consensus       339 l~~~~~~  345 (514)
T KOG1906|consen  339 LTNAVFS  345 (514)
T ss_pred             Hhhhhcc
Confidence            9887754

>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification] Back     alignment and domain information
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>KOG2054 consensus Nucleolar RNA-associated protein (NRAP) [Function unknown] Back     alignment and domain information
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query729
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 4e-35
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 4e-32
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 1e-30
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 7e-30
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 1e-29
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 6e-28
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 2e-23
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 2e-21
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 6e-05
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
 Score =  135 bits (340), Expect = 4e-35
 Identities = 51/326 (15%), Positives = 106/326 (32%), Gaps = 49/326 (15%)

Query: 49  IIAQVQPTVVSEERRKAVIDYVQRLIRNYL-GCEVFPFGSVPLKTYLPDGDIDLTAFGGL 107
            +A + P+    E R   I  ++  ++      ++  FGS     YLP  DID      L
Sbjct: 28  FVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSEL 87

Query: 108 NVEEALANDVCSVLEREDQNKAAEFVVKDAQLIRAEVKLVKCLVQNIVVDISFNQLGGLS 167
             +E  + +    L    + K     V+     R  +         I + +SF +  G+ 
Sbjct: 88  GGKE--SRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIE 145

Query: 168 TLCFLEQVDRLIGKDHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFH 227
               + +    +      +  ++++K + +   R+   H G +  +++  LV    H+  
Sbjct: 146 AAKLIRE---WLDDTPGLRELVLIVKQFLHAR-RLNNVHTGGLGGFSIICLVFSFLHMHP 201

Query: 228 SSL-------NGPLAVLYKFLDYFSK-FDWDSYCISLNGPVRISSLPEVVVETPENSGGD 279
             +       +    +L +F + + K F +D   +  +    +                 
Sbjct: 202 RIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGYPVY---------------- 245

Query: 280 LLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRS 339
                         F   +       ++  P  L I DP  E+NN+ R     N   I+ 
Sbjct: 246 --------------FPKSTWSAIQPIKN--PFSLAIQDPGDESNNISRGSF--NIRDIKK 287

Query: 340 AFTYGARKLGHILSQPEESLTDELRK 365
           AF      L +   +   +   +   
Sbjct: 288 AFAGAFDLLTNRCFELHSATFKDRLG 313
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Length = 437 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query729
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.65
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.51
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 97.52
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.51
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 97.41
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.3
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 96.48
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 96.19
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 94.77
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 94.59
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 88.67
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=4.6e-50  Score=427.37  Aligned_cols=273  Identities=19%  Similarity=0.338  Sum_probs=224.1

Q ss_pred             ChhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh-hcCCCceEeeccccCCCCCCCCceEEEecCCCcc--h
Q 004802           35 GAEYWQRAEEATQGIIAQVQPTVVSEERRKAVIDYVQRLIRN-YLGCEVFPFGSVPLKTYLPDGDIDLTAFGGLNVE--E  111 (729)
Q Consensus        35 ~~e~w~~lE~ei~efv~~I~PT~eE~~~R~~Vv~~Lq~iI~~-~p~a~V~~FGS~~tGL~LP~SDIDLvV~~~~~~~--~  111 (729)
                      ..+.-..|++||.+|+++++||++|.++|++++++|+++++. ||+++|++|||+++|+++|+||||++|..+....  .
T Consensus        14 ~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~   93 (323)
T 3nyb_A           14 QKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESR   93 (323)
T ss_dssp             CSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHH
T ss_pred             cchHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHH
Confidence            356778899999999999999999999999999999999996 7999999999999999999999999999886532  2


Q ss_pred             HHHHHHHHHHHHHhhccccccceEEEEEE-ecceeeEEEee--CCeEEEEeeecCCcchhhHHHHHHHHHhcCCchhHHH
Q 004802          112 ALANDVCSVLEREDQNKAAEFVVKDAQLI-RAEVKLVKCLV--QNIVVDISFNQLGGLSTLCFLEQVDRLIGKDHLFKRS  188 (729)
Q Consensus       112 ~l~~~V~~iL~~~~~n~~~~f~Vk~Vq~I-~ARVPIIKf~~--~gI~VDISfNn~~Gi~ns~fLe~v~~~i~kdp~fr~L  188 (729)
                      ..+..+.++|++.       -.+.+|++| +||||||||++  .||+|||||++..|+.++.++   ..++..+|++|+|
T Consensus        94 ~~l~~l~~~L~~~-------~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~li---~~~~~~~~~~r~l  163 (323)
T 3nyb_A           94 NNLYSLASHLKKK-------NLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAKLI---REWLDDTPGLREL  163 (323)
T ss_dssp             HHHHHHHHHHHHT-------TSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHHHH---HHHHHSCTTHHHH
T ss_pred             HHHHHHHHHHhhC-------CCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHHHH---HHHHHhhhhHHHH
Confidence            3556677777542       123467778 89999999997  499999999999999999987   4557789999999


Q ss_pred             HHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCC------CCchH-HHHHHhhccc-ccccccceEEccCCc
Q 004802          189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSL------NGPLA-VLYKFLDYFS-KFDWDSYCISLNGPV  260 (729)
Q Consensus       189 vlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~psl------~~pLg-LL~~FFeyYs-~FDw~~~~ISI~GPV  260 (729)
                      +++||+||+ +++|++++.||||||+|++||++|||++++.+      ..+|+ +|++||+||+ +|||++++|+|+...
T Consensus       164 v~~iK~wak-~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~~Isv~~g~  242 (323)
T 3nyb_A          164 VLIVKQFLH-ARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDVALGSSDGY  242 (323)
T ss_dssp             HHHHHHHHH-HTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTEEEEESSSC
T ss_pred             HHHHHHHHH-HcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCcEEEEecCC
Confidence            999999998 89999999999999999999999999854211      13465 7899999999 999999999998210


Q ss_pred             ccCCCCccccccCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCCCCCCCcceEEeCCCCCCCCcccCcCHHHHHHHHHH
Q 004802          261 RISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLNIVDPLKENNNLGRSVSKGNFYRIRSA  340 (729)
Q Consensus       261 ~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~~~L~IeDPfdpsnNlGRSVs~~~~~rIr~a  340 (729)
                      +                  ..+.++.++.    +       .   .......||||||++++||+||+++  ++..||++
T Consensus       243 ~------------------~~~~k~~~~~----~-------~---~~~~~~~l~IeDP~~~~~nigr~~~--~~~~I~~~  288 (323)
T 3nyb_A          243 P------------------VYFPKSTWSA----I-------Q---PIKNPFSLAIQDPGDESNNISRGSF--NIRDIKKA  288 (323)
T ss_dssp             E------------------EEEEGGGCGG----G-------C---SCSCSSSCCBEETTEEEEETTTTCT--THHHHHHH
T ss_pred             c------------------ceeeHHhccc----c-------c---ccCCCceEEEeCCCCCCcccccchH--HHHHHHHH
Confidence            0                  0111110000    0       0   0112457999999999999999986  69999999


Q ss_pred             HHHHHHHHHhhh
Q 004802          341 FTYGARKLGHIL  352 (729)
Q Consensus       341 F~~Aa~~L~~il  352 (729)
                      |++|++.|.+.+
T Consensus       289 F~~A~~~L~~~~  300 (323)
T 3nyb_A          289 FAGAFDLLTNRC  300 (323)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998864
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 729
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 5e-21
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 3e-19
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 9e-13
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score = 89.1 bits (220), Expect = 5e-21
 Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 15/180 (8%)

Query: 189 IILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLNGPLAVLYKFLDYFSKFD 248
            + +KAW    + +      ++++YA+  + +Y   +    L      L          D
Sbjct: 8   AMAVKAWGKA-TNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPD 66

Query: 249 WDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFL---KECVEQFSVPSRGFDTNS 305
           +             + L  ++               E +   +      S     F  N 
Sbjct: 67  FSPL-----YDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNK 121

Query: 306 RSFPPKHLNIVDPLKENN----NLGRSVSKGNFYRIRSAFTYGARKLGHIL--SQPEESL 359
           +     +  I DP ++      NL R +    F  ++  F   A+ +   L  + PE+S+
Sbjct: 122 KGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLPTNAPEKSI 181
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query729
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.92
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.82
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.81
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.55
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.54
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.76
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.16
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 97.78
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.67
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 97.6
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 97.59
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 97.45
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 97.05
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 96.16
d2pbea2135 Aminoglycoside 6-adenylyltransferase AadK {Bacillu 83.5
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 82.59
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 81.14
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.92  E-value=2.3e-25  Score=214.25  Aligned_cols=140  Identities=19%  Similarity=0.359  Sum_probs=101.5

Q ss_pred             chhHHHHHHHHHHHHHhhCccCCCCCCCChHHHHHHHHHHHHhcCCCCC--------------------------CchH-
Q 004802          183 HLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLFHSSLN--------------------------GPLA-  235 (729)
Q Consensus       183 p~fr~LvlLIK~Wak~er~Ln~a~~GgLSSYaL~LMVI~fLQ~~~psl~--------------------------~pLg-  235 (729)
                      |++|+|+++||+||| .++|+++++||||||||++|||+|||+..+...                          .+|+ 
T Consensus         2 P~~R~l~~~vK~Wak-~~~i~~~~~G~lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~   80 (183)
T d2b4va1           2 VAARHTAMAVKAWGK-ATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHLPRYPDFSPLYDCDPTELGR   80 (183)
T ss_dssp             TTHHHHHHHHHHHHH-TCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGSCSSCCCCCCCCCCHHHHHH
T ss_pred             cceeeHHHHHHHHHH-HcCCCCccCCCchHHHHHHHHHHHHHhcCCCCCCCHHHhccccccccccccccccCCCCCCHHH
Confidence            789999999999998 899999999999999999999999999653210                          1355 


Q ss_pred             HHHHHhhccc-ccccccceEEccCCcccCCCCccccccCCCCCCCcccCHHHHHHHhhhccCCCCCCCCCCCCCCCcceE
Q 004802          236 VLYKFLDYFS-KFDWDSYCISLNGPVRISSLPEVVVETPENSGGDLLLSSEFLKECVEQFSVPSRGFDTNSRSFPPKHLN  314 (729)
Q Consensus       236 LL~~FFeyYs-~FDw~~~~ISI~GPV~lssLp~~~~e~p~~gg~~~ll~ke~lr~~~~~fs~~~rg~e~~~~~f~~~~L~  314 (729)
                      ||.+||+||+ +|||++.+|+++...                    .+.+...+     ....     ...+......|+
T Consensus        81 Ll~~FF~~Y~~~fd~~~~~Isi~~g~--------------------~~~k~~~~-----~~~~-----~~~~~~~~~~l~  130 (183)
T d2b4va1          81 LLHGFFIFYAHHFDYEREVVSLNRNR--------------------RSYRSDIG-----WNFP-----QNKKGTFSYNFC  130 (183)
T ss_dssp             HHHHHHHHHHHSSCTTTEEBCSSSSS--------------------CEEHHHHT-----CCCG-----GGEETTEECSSC
T ss_pred             HHHHHHHHhccccCHHHceeeeccCC--------------------ccchhhhh-----cccc-----ccCCCCCCcceE
Confidence            7899999999 799999999997321                    11111110     0000     001122345699


Q ss_pred             EeCCCCCC----CCcccCcCHHHHHHHHHHHHHHHHHHHhhhc
Q 004802          315 IVDPLKEN----NNLGRSVSKGNFYRIRSAFTYGARKLGHILS  353 (729)
Q Consensus       315 IeDPfdps----nNlGRSVs~~~~~rIr~aF~~Aa~~L~~il~  353 (729)
                      |||||++.    +|+||+++..++.+|+++|++|++.|.+++.
T Consensus       131 IeDPfd~~~~~~~Nv~r~v~~~~~~~I~~~f~~a~~~l~~~~~  173 (183)
T d2b4va1         131 IEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFLP  173 (183)
T ss_dssp             BBCSSTTTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred             EeCCCccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999975    5777778888899999999999999998765
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure