Citrus Sinensis ID: 004805
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y253 | 713 | DNA polymerase eta OS=Hom | yes | no | 0.530 | 0.542 | 0.437 | 6e-87 | |
| Q9JJN0 | 694 | DNA polymerase eta OS=Mus | yes | no | 0.578 | 0.608 | 0.405 | 1e-80 | |
| O42917 | 872 | N-acetyltransferase eso1 | yes | no | 0.465 | 0.388 | 0.294 | 1e-34 | |
| Q6R3M4 | 717 | DNA polymerase iota OS=Mu | no | no | 0.462 | 0.470 | 0.305 | 2e-31 | |
| Q9UNA4 | 740 | DNA polymerase iota OS=Ho | no | no | 0.466 | 0.459 | 0.305 | 2e-31 | |
| A3EWL3 | 1105 | DNA repair protein REV1 O | no | no | 0.477 | 0.314 | 0.283 | 3e-29 | |
| Q1RFU0 | 351 | DNA polymerase IV OS=Esch | yes | no | 0.371 | 0.772 | 0.290 | 1e-28 | |
| Q0TL85 | 351 | DNA polymerase IV OS=Esch | yes | no | 0.371 | 0.772 | 0.290 | 1e-28 | |
| A1A7U2 | 351 | DNA polymerase IV OS=Esch | yes | no | 0.371 | 0.772 | 0.290 | 1e-28 | |
| Q3Z5A4 | 351 | DNA polymerase IV OS=Shig | yes | no | 0.371 | 0.772 | 0.290 | 2e-28 |
| >sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1 | Back alignment and function desciption |
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Score = 322 bits (826), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 239/402 (59%), Gaps = 15/402 (3%)
Query: 12 RIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGD 71
R++A VD+DCF+VQVEQR+ P LR P AVVQY WKGGG+IAV YEAR +GV RSM D
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWAD 66
Query: 72 EAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAE 131
+AK++CP + L QV +RGKA+L+ YR A EV+ I++R ERASIDE Y+DLT A +
Sbjct: 67 DAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQ 126
Query: 132 AMLA--ETPPESLDEVDEEALKSHILGLESKDGNDSKATVK-----EWLCRCDADHR--- 181
L + P S D + ++ G + + K ++ +WL D+
Sbjct: 127 ERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSP 186
Query: 182 DKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL 241
D L G +IV E+R + +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L
Sbjct: 187 DLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQL 246
Query: 242 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 301
+PI+K++ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI
Sbjct: 247 FSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIE 306
Query: 302 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 361
+ V+ R LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L
Sbjct: 307 HDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQL 366
Query: 362 TLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQ 402
+ D R + C L RY K+ D F + +
Sbjct: 367 VVSIRV----QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIK 404
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DNA polymerase specifically involved in DNA repair. Plays an important role in translesion synthesis, where the normal high fidelity DNA polymerases cannot proceed and DNA synthesis stalls. Plays an important role in the repair of UV-induced pyrimidine dimers. Depending on the context, it inserts the correct base, but causes frequent base transitions and transversions. May play a role in hypermutation at immunoglobulin genes. Forms a Schiff base with 5'-deoxyribose phosphate at abasic sites, but does not have lyase activity. Targets POLI to replication foci. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1 | Back alignment and function description |
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| >sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eso1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6R3M4|POLI_MOUSE DNA polymerase iota OS=Mus musculus GN=Poli PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=3 | Back alignment and function description |
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| >sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q1RFU0|DPO4_ECOUT DNA polymerase IV OS=Escherichia coli (strain UTI89 / UPEC) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q0TL85|DPO4_ECOL5 DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|A1A7U2|DPO4_ECOK1 DNA polymerase IV OS=Escherichia coli O1:K1 / APEC GN=dinB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q3Z5A4|DPO4_SHISS DNA polymerase IV OS=Shigella sonnei (strain Ss046) GN=dinB PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| 297738026 | 773 | unnamed protein product [Vitis vinifera] | 0.991 | 0.935 | 0.608 | 0.0 | |
| 359472774 | 779 | PREDICTED: DNA polymerase eta [Vitis vin | 0.991 | 0.928 | 0.603 | 0.0 | |
| 356528144 | 703 | PREDICTED: DNA polymerase eta-like [Glyc | 0.950 | 0.985 | 0.596 | 0.0 | |
| 297791325 | 672 | hypothetical protein ARALYDRAFT_494508 [ | 0.910 | 0.988 | 0.583 | 0.0 | |
| 30694599 | 672 | DNA polymerase eta subunit [Arabidopsis | 0.909 | 0.986 | 0.577 | 0.0 | |
| 23953869 | 672 | putative translesion synthesis polymeras | 0.909 | 0.986 | 0.574 | 0.0 | |
| 2660675 | 689 | similar to DNA-damage-inducible protein | 0.909 | 0.962 | 0.564 | 0.0 | |
| 449526991 | 557 | PREDICTED: DNA polymerase eta-like [Cucu | 0.716 | 0.937 | 0.711 | 0.0 | |
| 358348538 | 543 | DNA polymerase eta [Medicago truncatula] | 0.709 | 0.952 | 0.733 | 0.0 | |
| 255574476 | 560 | DNA polymerase eta, putative [Ricinus co | 0.757 | 0.985 | 0.661 | 0.0 |
| >gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/779 (60%), Positives = 556/779 (71%), Gaps = 56/779 (7%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVA+P+SS ARIIAH+D+DCFYVQVEQRKQP LRGLPTAVVQYN WKGGGLIAV YEAR
Sbjct: 1 MPVAKPESSDARIIAHIDMDCFYVQVEQRKQPDLRGLPTAVVQYNSWKGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
+GVKRSMRGDEAK+VCPQI+LVQVPVARGKADL+ YRNAGSEVVSILARKGRCERASID
Sbjct: 61 KFGVKRSMRGDEAKQVCPQIQLVQVPVARGKADLNVYRNAGSEVVSILARKGRCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAEAMLAE PPESL+ +DEEALKSH+LGL ++ GND K +V+ WLCR ADH
Sbjct: 121 EVYLDLTDAAEAMLAEMPPESLEAIDEEALKSHVLGL-NEGGNDIKESVRVWLCRSQADH 179
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLLACG LIV ELRMQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+G
Sbjct: 180 RDKLLACGALIVAELRMQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRG 239
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGI
Sbjct: 240 LLGSLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGI 299
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEV++RLL KSHGSGK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHT
Sbjct: 300 SGEEVESRLLSKSHGSGKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHT 359
Query: 361 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLHA A+KS+DSDS KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ +
Sbjct: 360 LTLHARAYKSNDSDSHKKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQ 419
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSPSGSE 479
SGW ITALSVSASKIV + +GTCSIMKYF+G D S+ +Q D +AA LS SGSE
Sbjct: 420 CSGWSITALSVSASKIVAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSE 479
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGL------------DPSCSIS 527
SY LN E Q + PGE+ I + M +L Q E K W +P+ S+S
Sbjct: 480 SYLGLNPRETQKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLS 539
Query: 528 KQTSGQWFHSGTESSSSLDQNKPQNRDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFF 587
+Q + SSSS ++ ++ +P + E + +A +D A+ + +
Sbjct: 540 EQEQVEPIQDTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGY 599
Query: 588 KSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVNIPKERL------------------ 629
K D+ CS + + + S + QV +PKE +
Sbjct: 600 KIDDIDCSVMDELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRN 656
Query: 630 --------DNSTGDCLSESNQ-----------NQVNIPKERLAEAATTSTSTDRCGSDQI 670
D S D LS Q NQV +PKE + AA T + RC
Sbjct: 657 DGYKIDDIDCSVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRCSLGGG 714
Query: 671 QQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKNR 729
+R E+W +I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP KN+
Sbjct: 715 AERRETWSYKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK 773
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp. lyrata] gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana] gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana] gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana] gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula] gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis] gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 729 | ||||||
| TAIR|locus:2156309 | 672 | POLH "Y-family DNA polymerase | 0.816 | 0.885 | 0.615 | 1.1e-198 | |
| ZFIN|ZDB-GENE-060421-4949 | 749 | polh "polymerase (DNA directed | 0.600 | 0.584 | 0.408 | 1e-84 | |
| UNIPROTKB|F1NAG6 | 686 | POLH "Uncharacterized protein" | 0.554 | 0.588 | 0.438 | 9.3e-84 | |
| UNIPROTKB|F1NCM3 | 657 | POLH "Uncharacterized protein" | 0.554 | 0.614 | 0.438 | 9.3e-84 | |
| UNIPROTKB|E2RC81 | 712 | POLH "Uncharacterized protein" | 0.598 | 0.612 | 0.410 | 1.7e-82 | |
| UNIPROTKB|Q9Y253 | 713 | POLH "DNA polymerase eta" [Hom | 0.530 | 0.542 | 0.432 | 1.1e-80 | |
| UNIPROTKB|F1RRJ6 | 698 | POLH "Uncharacterized protein" | 0.580 | 0.606 | 0.392 | 1.4e-78 | |
| RGD|1309893 | 689 | Polh "polymerase (DNA directed | 0.629 | 0.666 | 0.394 | 6.2e-78 | |
| MGI|MGI:1891457 | 694 | Polh "polymerase (DNA directed | 0.631 | 0.662 | 0.391 | 1e-77 | |
| UNIPROTKB|F1MZ79 | 710 | POLH "Uncharacterized protein" | 0.481 | 0.494 | 0.444 | 3.6e-76 |
| TAIR|locus:2156309 POLH "Y-family DNA polymerase H" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1834 (650.7 bits), Expect = 1.1e-198, Sum P(2) = 1.1e-198
Identities = 372/604 (61%), Positives = 440/604 (72%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
MPVARP++S AR+IAHVD+DCFYVQVEQRKQP+LRGLP+AVVQYNEW+GGGLIAV YEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASID 120
GVKRSMRGDEAK CPQI+LVQVPVARGKADL+ YR+AGSEVVSILA+ G+CERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDADH 180
EVYLDLTDAAE+MLA+ PPESL+ +DEE LKSHILG+ +DG+D K +V+ W+CR DAD
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGMNREDGDDFKESVRNWICREDADR 180
Query: 181 RDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKG 240
RDKLL+CG++IV ELR QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+
Sbjct: 181 RDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQE 240
Query: 241 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 300
LL SLPIKKMKQLGGKLGTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGI
Sbjct: 241 LLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGI 300
Query: 301 SGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 360
SGEEVQ RLLPKSHGSGK+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA T
Sbjct: 301 SGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIAST 360
Query: 361 LTLHXXXXXXXXXXXXXXXXXXXCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 420
LTLH CP+RYG KIQED FNLFQA LRE++GSFG+K QG+
Sbjct: 361 LTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNK 420
Query: 421 YSGWRITALSVSASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSE 479
WRIT LSVSASKIV + SGT SIM+YF S S D + ++ S SE
Sbjct: 421 LETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRSA---DGCVQGNVAMTASASE 477
Query: 480 SYSTLNSTELQNELPGEQVWIEHSMADLGQLEMKANTWNGLDP-SCSISKQTSGQWFHSG 538
S STE Q +P + +++ + + + + D SC ++ T
Sbjct: 478 GCSEQRSTETQAAMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNEATDVSTQSES 537
Query: 539 TESSSSLDQNKPQNRDDSRMRSVP----IKSNQQEHKKSALKDKGASSILNFFKSGDLSC 594
+ + + + N + R +P I N S + + S++ + K LS
Sbjct: 538 NKGTQTKKIGRKMNNSKEKNRGMPSIVDIFKNYNATPPSKQETQEDSTVSSASKRAKLSS 597
Query: 595 SSGN 598
SS N
Sbjct: 598 SSHN 601
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| ZFIN|ZDB-GENE-060421-4949 polh "polymerase (DNA directed), eta" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NAG6 POLH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NCM3 POLH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RC81 POLH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y253 POLH "DNA polymerase eta" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RRJ6 POLH "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| RGD|1309893 Polh "polymerase (DNA directed), eta" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1891457 Polh "polymerase (DNA directed), eta (RAD 30 related)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MZ79 POLH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.766 |
| 4th Layer | 2.7.7.7 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 729 | |||
| cd01702 | 359 | cd01702, PolY_Pol_eta, DNA Polymerase eta | 1e-114 | |
| cd03586 | 334 | cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kapp | 1e-66 | |
| COG0389 | 354 | COG0389, DinP, Nucleotidyltransferase/DNA polymera | 7e-54 | |
| cd00424 | 343 | cd00424, PolY, Y-family of DNA polymerases | 2e-51 | |
| PRK02406 | 343 | PRK02406, PRK02406, DNA polymerase IV; Validated | 5e-43 | |
| pfam00817 | 148 | pfam00817, IMS, impB/mucB/samB family | 7e-39 | |
| cd01703 | 379 | cd01703, PolY_Pol_iota, DNA Polymerase iota | 2e-36 | |
| cd01701 | 404 | cd01701, PolY_Rev1, DNA polymerase Rev1 | 4e-36 | |
| PRK14133 | 347 | PRK14133, PRK14133, DNA polymerase IV; Provisional | 3e-34 | |
| PRK01810 | 407 | PRK01810, PRK01810, DNA polymerase IV; Validated | 7e-34 | |
| PRK03348 | 454 | PRK03348, PRK03348, DNA polymerase IV; Provisional | 1e-32 | |
| PRK03103 | 409 | PRK03103, PRK03103, DNA polymerase IV; Reviewed | 5e-28 | |
| PRK03858 | 396 | PRK03858, PRK03858, DNA polymerase IV; Validated | 1e-27 | |
| PRK01216 | 351 | PRK01216, PRK01216, DNA polymerase IV; Validated | 2e-24 | |
| PRK03352 | 346 | PRK03352, PRK03352, DNA polymerase IV; Validated | 4e-24 | |
| cd01700 | 344 | cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Poly | 2e-23 | |
| PRK02794 | 419 | PRK02794, PRK02794, DNA polymerase IV; Provisional | 8e-21 | |
| pfam11799 | 136 | pfam11799, IMS_C, impB/mucB/samB family C-terminal | 4e-16 | |
| cd03468 | 335 | cd03468, PolY_like, DNA Polymerase Y-family | 5e-10 | |
| PTZ00205 | 571 | PTZ00205, PTZ00205, DNA polymerase kappa; Provisio | 8e-10 | |
| PRK03609 | 422 | PRK03609, umuC, DNA polymerase V subunit UmuC; Rev | 3e-06 |
| >gnl|CDD|176456 cd01702, PolY_Pol_eta, DNA Polymerase eta | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-114
Identities = 164/425 (38%), Positives = 204/425 (48%), Gaps = 70/425 (16%)
Query: 15 AHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAK 74
AH+D+D F+ QVEQ + LR P AVVQ+N +IAV Y AR +GV R M DEAK
Sbjct: 1 AHIDMDAFFAQVEQVRLGLLRNDPVAVVQWN-----SIIAVSYAARAFGVTRFMTIDEAK 55
Query: 75 EVCPQIELVQVPVARGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAML 134
+ CP + L V Y+ E D E
Sbjct: 56 KKCPDLILAHVAT---------YKKGEDE-----------------------ADYHENPS 83
Query: 135 AETPPESLDEVDEEALKSHILGLESKDGND-SKATVKEWLCRCDADHRDKLLACGVLIVT 193
SLD + K IL + + G+ KA++ E L G IV
Sbjct: 84 PARHKVSLDPYRRASRK--ILNILKRFGDVVEKASIDE-----------AYLDLGSRIVE 130
Query: 194 ELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 253
E+R QV E +TCSAGIAHNKMLAKLASGMNKP QT + +V L SLPI ++ L
Sbjct: 131 EIRQQVYDELGYTCSAGIAHNKMLAKLASGMNKPNAQTILRNDAVASFLSSLPITSIRGL 190
Query: 254 GGKLGTSLQNELGVTTVGDLLKF--SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311
GGKLG + + LG+ T GD+ F SE LQE +G G WL+N+ RGI E V+ R LP
Sbjct: 191 GGKLGEEIIDLLGLPTEGDVAGFRSSESDLQEHFGEKLGEWLYNLLRGIDHEPVKPRPLP 250
Query: 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 371
KS GS K+FPG AL T VQHWL L EL+ RL D +N R TL L
Sbjct: 251 KSMGSSKNFPGKTALSTE-DVQHWLLVLASELNSRLEDDRYENNRRPKTLVLSLRQRGDG 309
Query: 372 DSDSRKKFPSKSCPLRYGTA-KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 430
S+SC L A KI +D F L +A E LG + +T LS
Sbjct: 310 ------VRRSRSCALPRYDAQKIVKDAFKLIKAINEEGLGLAWN---------YPLTLLS 354
Query: 431 VSASK 435
+S +K
Sbjct: 355 LSFTK 359
|
Pol eta, also called Rad30A, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Unlike other Y-family members, Pol eta can efficiently and accurately replicate DNA past UV-induced lesions. Its activity is initiated by two simultaneous interactions: the PIP box in pol eta interacting with PCNA, and the UBZ (ubiquitin-binding zinc finger) in pol eta interacting with monoubiquitin attached to PCNA. Pol eta is more efficient in copying damaged DNA than undamaged DNA and seems to recognize when a lesion has been passed, facilitating a lesion-dependent dissociation from the DNA. Length = 359 |
| >gnl|CDD|176459 cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa | Back alignment and domain information |
|---|
| >gnl|CDD|223466 COG0389, DinP, Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|176453 cd00424, PolY, Y-family of DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|235035 PRK02406, PRK02406, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|216135 pfam00817, IMS, impB/mucB/samB family | Back alignment and domain information |
|---|
| >gnl|CDD|176457 cd01703, PolY_Pol_iota, DNA Polymerase iota | Back alignment and domain information |
|---|
| >gnl|CDD|176455 cd01701, PolY_Rev1, DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >gnl|CDD|184529 PRK14133, PRK14133, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179337 PRK01810, PRK01810, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|235118 PRK03348, PRK03348, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235104 PRK03103, PRK03103, DNA polymerase IV; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|179663 PRK03858, PRK03858, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|179251 PRK01216, PRK01216, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|179564 PRK03352, PRK03352, DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|176454 cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V | Back alignment and domain information |
|---|
| >gnl|CDD|179473 PRK02794, PRK02794, DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221229 pfam11799, IMS_C, impB/mucB/samB family C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|176458 cd03468, PolY_like, DNA Polymerase Y-family | Back alignment and domain information |
|---|
| >gnl|CDD|140232 PTZ00205, PTZ00205, DNA polymerase kappa; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179607 PRK03609, umuC, DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| KOG2095 | 656 | consensus DNA polymerase iota/DNA damage inducible | 100.0 | |
| PRK01216 | 351 | DNA polymerase IV; Validated | 100.0 | |
| cd01701 | 404 | PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesi | 100.0 | |
| PTZ00205 | 571 | DNA polymerase kappa; Provisional | 100.0 | |
| PRK14133 | 347 | DNA polymerase IV; Provisional | 100.0 | |
| PRK01810 | 407 | DNA polymerase IV; Validated | 100.0 | |
| cd01702 | 359 | PolY_Pol_eta DNA Polymerase eta. Pol eta, also cal | 100.0 | |
| PRK03103 | 409 | DNA polymerase IV; Reviewed | 100.0 | |
| PRK03348 | 454 | DNA polymerase IV; Provisional | 100.0 | |
| cd01703 | 379 | PolY_Pol_iota DNA Polymerase iota. Pol iota, also | 100.0 | |
| PRK03858 | 396 | DNA polymerase IV; Validated | 100.0 | |
| PRK02794 | 419 | DNA polymerase IV; Provisional | 100.0 | |
| cd00424 | 343 | PolY Y-family of DNA polymerases. Y-family DNA pol | 100.0 | |
| PRK03352 | 346 | DNA polymerase IV; Validated | 100.0 | |
| cd03586 | 334 | PolY_Pol_IV_kappa DNA Polymerase IV/Kappa. Pol IV, | 100.0 | |
| PRK03609 | 422 | umuC DNA polymerase V subunit UmuC; Reviewed | 100.0 | |
| cd01700 | 344 | PolY_Pol_V_umuC umuC subunit of DNA Polymerase V. | 100.0 | |
| PRK02406 | 343 | DNA polymerase IV; Validated | 100.0 | |
| COG0389 | 354 | DinP Nucleotidyltransferase/DNA polymerase involve | 100.0 | |
| KOG2094 | 490 | consensus Predicted DNA damage inducible protein [ | 100.0 | |
| cd03468 | 335 | PolY_like DNA Polymerase Y-family. Y-family DNA po | 100.0 | |
| KOG2093 | 1016 | consensus Translesion DNA polymerase - REV1 deoxyc | 100.0 | |
| PF00817 | 149 | IMS: impB/mucB/samB family; InterPro: IPR001126 In | 100.0 | |
| PF11799 | 127 | IMS_C: impB/mucB/samB family C-terminal domain; In | 99.3 | |
| PF11798 | 32 | IMS_HHH: IMS family HHH motif; InterPro: IPR024728 | 98.27 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 97.68 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 96.95 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 96.24 | |
| PF11731 | 93 | Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd | 95.66 | |
| PRK12766 | 232 | 50S ribosomal protein L32e; Provisional | 92.31 | |
| PF08827 | 59 | DUF1805: Domain of unknown function (DUF1805); Int | 91.97 | |
| COG3743 | 133 | Uncharacterized conserved protein [Function unknow | 91.55 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 91.18 | |
| PF04994 | 81 | TfoX_C: TfoX C-terminal domain; InterPro: IPR00707 | 90.94 | |
| PF03118 | 66 | RNA_pol_A_CTD: Bacterial RNA polymerase, alpha cha | 89.41 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 88.02 | |
| PF14229 | 122 | DUF4332: Domain of unknown function (DUF4332) | 84.84 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 82.95 | |
| KOG2093 | 1016 | consensus Translesion DNA polymerase - REV1 deoxyc | 80.25 | |
| COG2251 | 474 | Predicted nuclease (RecB family) [General function | 80.11 |
| >KOG2095 consensus DNA polymerase iota/DNA damage inducible protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=675.51 Aligned_cols=359 Identities=52% Similarity=0.769 Sum_probs=327.1
Q ss_pred CCCCCCCCCCCCEEEEEeCCchhHhhhchhCCCCCCCcEEEEeccCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCc
Q 004805 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQI 80 (729)
Q Consensus 1 ~~~~~~~~~~~rvI~HIDmD~FyASVE~~~~P~LrgkPvaV~q~~~~~~g~ViA~SYeARk~GVk~GM~~~eA~~LCP~L 80 (729)
|+|+++.-++.|||+||||||||||||++++|+|+++|+||+||+ +||||||+||++||+++|+++||+++||+|
T Consensus 5 ~s~~~~~~s~~RVIahVDMDcFyaQVEq~r~P~lr~~PlaVvQ~n-----gIIAVsYeARa~GV~R~M~v~EAK~kCPqL 79 (656)
T KOG2095|consen 5 GSVLGTQNSSLRVIAHVDMDCFYAQVEQRRNPELRSKPLAVVQYN-----GIIAVSYEARAFGVKRLMTVDEAKKKCPQL 79 (656)
T ss_pred ccccCccccccceEEEecchhhHHHHHhhcCchhccCceEEEEee-----eEEEEehhhhhhCCchhhhHHHHHhhCCce
Confidence 578899889999999999999999999999999999999999997 599999999999999999999999999999
Q ss_pred EEEEccccCCCCChHHHHHHHHHHHHHHHhc-CCeeeeccceeEEecccchhHhhhcCCCCCcchhhHHHhhhhcccCc-
Q 004805 81 ELVQVPVARGKADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLE- 158 (729)
Q Consensus 81 ~vv~Vp~~~~k~d~~~Yr~~S~~I~~iL~~~-~~vE~~SIDEafLDlT~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~- 158 (729)
+++|||++++|+|...||+++.+|+.+|..| +.||++++||+|+|+|.++++.+.+..........++....++++..
T Consensus 80 vlv~v~~~~~ka~~~~YR~as~ev~~~L~~y~~viek~~~dea~ld~tasvder~q~L~s~~~~~~~~~~p~~~~~~~~s 159 (656)
T KOG2095|consen 80 VLVHVPVAREKADLPKYREASEEVKESLEPYRPVIEKASKDEAFLDLTASVDERLQDLQSDEFNMLLEEPPYGLIYGLPS 159 (656)
T ss_pred EEeecccccccchhhhhhhhHHHHHHHHhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhccchhcccCCcc
Confidence 9999999999999999999999999999997 68999999999999999998765543321100011111123444432
Q ss_pred ----------cCCCCCchhhhhhhhhccCcchhhhhhhhHHHHHHHHHHHHHhHhCCceeEeecCCHHHHHHhccCCCCC
Q 004805 159 ----------SKDGNDSKATVKEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPA 228 (729)
Q Consensus 159 ----------~~~~~~~~~~~~~w~~~~~~~~~d~ll~~~~~la~~IR~~I~~etGlt~S~GIA~NklLAKLAS~~~KPn 228 (729)
.+++....+.+..|++.++.+|+|.+|.+|+.||++||++|+.+||||||+|||+||+|||||+.++|||
T Consensus 160 ~~~~~~~~~~~e~~~~~ee~~~~~~~~~d~~~~d~~L~iGa~Iv~EiR~~i~~elg~tCSAGIa~NKmLAKLvsg~nKPn 239 (656)
T KOG2095|consen 160 ALPNTREATNSENPLMREEIVSLWIENDDFDWDDVRLLIGAQIVKEIRDAIKLELGYTCSAGIAHNKMLAKLVSGRNKPN 239 (656)
T ss_pred ccchhhhhhhhccccchhhHhhhhhhccccCchhhhhHHHHHHHHHHHHHHHHHhCceeeccccccHHHHHHHhccCCCC
Confidence 2344445567889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccCCchhcccccCcccccCCCcHHHHHHHHHHhCCcchhhhhcCCHHHHHHhhCCChHHHHHHHHhcCCCcccccc
Q 004805 229 QQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 308 (729)
Q Consensus 229 gqtvv~~~~v~~fL~~LPI~~L~GIG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rFG~~~g~~L~~~arGiD~~~V~~~ 308 (729)
.||+|++..+++||..|||+++|++|+++++.|.+.|||.++|||+++++..|++.||.+.|.|||..|+|+|.++|.++
T Consensus 240 qQTil~~~~v~~ll~slpi~k~~~lGGk~G~~lie~LGi~~vgdl~~fse~~L~~~fg~~~g~~l~~la~Gid~s~V~pr 319 (656)
T KOG2095|consen 240 QQTILPNTYVQDLLDSLPITKIRTLGGKLGEELIEVLGIDSVGDLQQFSETQLQKKFGEKNGTWLRNLARGIDNSPVRPR 319 (656)
T ss_pred cceecchHHHHHHHHhCCCceeeeccchHHHHHHHHhCCchHHHHHhcCHHHHHHhhCcchhHHHHHHhcccCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred cCCcccccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcCceeEEEEEE
Q 004805 309 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 364 (729)
Q Consensus 309 ~~pKSis~s~tF~~p~di~~~eel~~~L~~LaeeL~~RLr~~~~~~~~~artLtL~ 364 (729)
..||||+.+++|++...+.+.+++..||..|++++..||..+..++.+.+.++.++
T Consensus 320 ~~pkSig~~K~Fpg~~~~~~~~~l~~wl~~la~el~~Rl~~d~~en~r~as~l~~~ 375 (656)
T KOG2095|consen 320 GLPKSIGSEKNFPGKRSRKSLEELQRWLNQLAEELAERLGKDRNENKRRASTLVVS 375 (656)
T ss_pred CCCcchhhhhcCCCccccccHHHHHHHHHHHHHHHHHHHHhhhhhhccccceEEee
Confidence 99999999999998888999999999999999999999999888899999999998
|
|
| >PRK01216 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >cd01701 PolY_Rev1 DNA polymerase Rev1 | Back alignment and domain information |
|---|
| >PTZ00205 DNA polymerase kappa; Provisional | Back alignment and domain information |
|---|
| >PRK14133 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >PRK01810 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >cd01702 PolY_Pol_eta DNA Polymerase eta | Back alignment and domain information |
|---|
| >PRK03103 DNA polymerase IV; Reviewed | Back alignment and domain information |
|---|
| >PRK03348 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >cd01703 PolY_Pol_iota DNA Polymerase iota | Back alignment and domain information |
|---|
| >PRK03858 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >PRK02794 DNA polymerase IV; Provisional | Back alignment and domain information |
|---|
| >cd00424 PolY Y-family of DNA polymerases | Back alignment and domain information |
|---|
| >PRK03352 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >cd03586 PolY_Pol_IV_kappa DNA Polymerase IV/Kappa | Back alignment and domain information |
|---|
| >PRK03609 umuC DNA polymerase V subunit UmuC; Reviewed | Back alignment and domain information |
|---|
| >cd01700 PolY_Pol_V_umuC umuC subunit of DNA Polymerase V | Back alignment and domain information |
|---|
| >PRK02406 DNA polymerase IV; Validated | Back alignment and domain information |
|---|
| >COG0389 DinP Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG2094 consensus Predicted DNA damage inducible protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd03468 PolY_like DNA Polymerase Y-family | Back alignment and domain information |
|---|
| >KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA | Back alignment and domain information |
|---|
| >PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases | Back alignment and domain information |
|---|
| >PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases [] | Back alignment and domain information |
|---|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria [] | Back alignment and domain information |
|---|
| >PRK12766 50S ribosomal protein L32e; Provisional | Back alignment and domain information |
|---|
| >PF08827 DUF1805: Domain of unknown function (DUF1805); InterPro: IPR014931 This protein is found in bacteria and archaea and has an N-terminal tetramerisation region that is composed of beta sheets | Back alignment and domain information |
|---|
| >COG3743 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
| >PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae | Back alignment and domain information |
|---|
| >PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PF14229 DUF4332: Domain of unknown function (DUF4332) | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG2251 Predicted nuclease (RecB family) [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 729 | ||||
| 3mr6_A | 435 | Human Dna Polymerase Eta - Dna Ternary Complex With | 3e-85 | ||
| 3mr2_A | 435 | Human Dna Polymerase Eta In Complex With Normal Dna | 3e-85 | ||
| 2dpi_A | 420 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 3e-30 | ||
| 2alz_A | 390 | Ternary Complex Of Hpoli With Dna And Dctp Length = | 6e-30 | ||
| 3h40_A | 389 | Binary Complex Of Human Dna Polymerase Iota With Te | 7e-30 | ||
| 1t3n_A | 388 | Structure Of The Catalytic Core Of Dna Polymerase I | 8e-30 | ||
| 3gv5_B | 420 | Human Dna Polymerase Iota In Complex With T Templat | 8e-29 | ||
| 1t94_A | 459 | Crystal Structure Of The Catalytic Core Of Human Dn | 8e-23 | ||
| 3pzp_A | 517 | Human Dna Polymerase Kappa Extending Opposite A Cis | 9e-23 | ||
| 2oh2_A | 508 | Ternary Complex Of Human Dna Polymerase Length = 50 | 1e-22 | ||
| 2uvv_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 2e-19 | ||
| 2bq3_A | 358 | Dna Adduct Bypass Polymerization By Sulfolobus Solf | 2e-19 | ||
| 1jxl_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 2e-19 | ||
| 4gc7_A | 359 | Crystal Structure Of Dpo4 In Complex With S-mc-dadp | 2e-19 | ||
| 2uvr_A | 358 | Crystal Structures Of Mutant Dpo4 Dna Polymerases W | 2e-19 | ||
| 3v6h_A | 348 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 2e-19 | ||
| 2w9b_A | 358 | Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deo | 2e-19 | ||
| 4f4z_B | 361 | Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Lengt | 2e-19 | ||
| 2asd_A | 360 | Oxog-Modified Insertion Ternary Complex Length = 36 | 2e-19 | ||
| 2rdi_A | 342 | Snapshots Of A Y-family Dna Polymerase In Replicati | 2e-19 | ||
| 2ago_A | 341 | Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide | 2e-19 | ||
| 3pvx_A | 347 | Binary Complex Of Aflatoxin B1 Adduct Modified Dna | 2e-19 | ||
| 2imw_P | 348 | Mechanism Of Template-Independent Nucleotide Incorp | 2e-19 | ||
| 3v6k_A | 347 | Replication Of N2,3-Ethenoguanine By Dna Polymerase | 2e-19 | ||
| 3gii_A | 341 | Dpo4 Extension Ternary Complex With Disordered A Op | 2e-19 | ||
| 3qz7_A | 360 | T-3 Ternary Complex Of Dpo4 Length = 360 | 3e-19 | ||
| 2r8j_A | 554 | Structure Of The Eukaryotic Dna Polymerase Eta In C | 1e-18 | ||
| 2wtf_A | 536 | Dna Polymerase Eta In Complex With The Cis-Diammine | 1e-18 | ||
| 1jih_A | 513 | Yeast Dna Polymerase Eta Length = 513 | 1e-18 | ||
| 3mfh_A | 520 | Dna Polymerase Eta In Complex With Undamaged Dna Le | 1e-18 | ||
| 1jx4_A | 352 | Crystal Structure Of A Y-Family Dna Polymerase In A | 2e-18 | ||
| 3pr4_A | 341 | Dpo4 Y12a Mutant Incorporating Dadp Opposite Templa | 3e-18 | ||
| 4f4w_A | 361 | Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Le | 3e-17 | ||
| 4f4y_A | 362 | Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length | 4e-17 | ||
| 3bq0_A | 354 | Pre-insertion Binary Complex Of Dbh Dna Polymerase | 9e-17 | ||
| 4f50_A | 361 | Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length | 1e-16 | ||
| 1k1q_A | 354 | Crystal Structure Of A Dinb Family Error Prone Dna | 1e-16 | ||
| 4dez_A | 356 | Structure Of Msdpo4 Length = 356 | 5e-16 | ||
| 3gqc_A | 504 | Structure Of Human Rev1-Dna-Dntp Ternary Complex Le | 6e-16 | ||
| 1im4_A | 221 | Crystal Structure Of A Dinb Homolog (Dbh) Lesion By | 6e-15 |
| >pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd 2bp Upstream Of The Active Site (Tt4) Length = 435 | Back alignment and structure |
|
| >pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And Incoming Nucleotide (Nrm) Length = 435 | Back alignment and structure |
| >pdb|2DPI|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 420 | Back alignment and structure |
| >pdb|2ALZ|A Chain A, Ternary Complex Of Hpoli With Dna And Dctp Length = 390 | Back alignment and structure |
| >pdb|3H40|A Chain A, Binary Complex Of Human Dna Polymerase Iota With Template UT Length = 389 | Back alignment and structure |
| >pdb|1T3N|A Chain A, Structure Of The Catalytic Core Of Dna Polymerase Iota In Complex With Dna And Dttp Length = 388 | Back alignment and structure |
| >pdb|3GV5|B Chain B, Human Dna Polymerase Iota In Complex With T Template Dna And Incoming Ddadp Length = 420 | Back alignment and structure |
| >pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna Polymerase Kappa Length = 459 | Back alignment and structure |
| >pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn Thymine Dimer Length = 517 | Back alignment and structure |
| >pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase Length = 508 | Back alignment and structure |
| >pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus Solfataricus Dpo4. Analysis And Crystal Structures Of Multiple Base- Pair Substitution And Frameshift Products With The Adduct 1,N2-Ethenoguanine Length = 358 | Back alignment and structure |
| >pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp Opposite Dt Length = 359 | Back alignment and structure |
| >pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8- Oxog Containing Dna Template-Primer Constructs Length = 358 | Back alignment and structure |
| >pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 348 | Back alignment and structure |
| >pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl- Deoxyguanosine Modified Dna Length = 358 | Back alignment and structure |
| >pdb|4F4Z|B Chain B, Y-family Dna Polymerase Chimera Dpo4-dpo4-dbh Length = 361 | Back alignment and structure |
| >pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex Length = 360 | Back alignment and structure |
| >pdb|2RDI|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication: Dpo4 In Apo And Binary/ternary Complex Forms Length = 342 | Back alignment and structure |
| >pdb|2AGO|A Chain A, Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide Selection And Pyrophosphorolysis Length = 341 | Back alignment and structure |
| >pdb|3PVX|A Chain A, Binary Complex Of Aflatoxin B1 Adduct Modified Dna (Afb1-Fapy) With Dna Polymerase Iv Length = 347 | Back alignment and structure |
| >pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation Catalyzed By A Template-Dependent Dna Polymerase Length = 348 | Back alignment and structure |
| >pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases Length = 347 | Back alignment and structure |
| >pdb|3GII|A Chain A, Dpo4 Extension Ternary Complex With Disordered A Opposite An Oxog In Anti Conformation Length = 341 | Back alignment and structure |
| >pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4 Length = 360 | Back alignment and structure |
| >pdb|2R8J|A Chain A, Structure Of The Eukaryotic Dna Polymerase Eta In Complex With 1,2- D(gpg)-cisplatin Containing Dna Length = 554 | Back alignment and structure |
| >pdb|2WTF|A Chain A, Dna Polymerase Eta In Complex With The Cis-Diammineplatinum (Ii) 1,3-Gtg Intrastrand Cross-Link Length = 536 | Back alignment and structure |
| >pdb|1JIH|A Chain A, Yeast Dna Polymerase Eta Length = 513 | Back alignment and structure |
| >pdb|3MFH|A Chain A, Dna Polymerase Eta In Complex With Undamaged Dna Length = 520 | Back alignment and structure |
| >pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A Ternary Complex With Dna Substrates And An Incoming Nucleotide Length = 352 | Back alignment and structure |
| >pdb|3PR4|A Chain A, Dpo4 Y12a Mutant Incorporating Dadp Opposite Template Dt Length = 341 | Back alignment and structure |
| >pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1 Length = 361 | Back alignment and structure |
| >pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh Length = 362 | Back alignment and structure |
| >pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase Length = 354 | Back alignment and structure |
| >pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4 Length = 361 | Back alignment and structure |
| >pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna Polymerase From Sulfolobus Solfataricus Length = 354 | Back alignment and structure |
| >pdb|4DEZ|A Chain A, Structure Of Msdpo4 Length = 356 | Back alignment and structure |
| >pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex Length = 504 | Back alignment and structure |
| >pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass Dna Polymerase Catalytic Fragment From Sulfolobus Solfataricus Length = 221 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 3h4d_A* 3h4b_A* ... Length = 420 | Back alignment and structure |
|---|
Score = 397 bits (1021), Expect = e-132
Identities = 118/445 (26%), Positives = 183/445 (41%), Gaps = 48/445 (10%)
Query: 1 MPVARPDSSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEAR 60
+P S R+I HVDLDCFY QVE P+L+ P V Q ++ YEAR
Sbjct: 20 LPTPNASS---RVIVHVDLDCFYAQVEMISNPELKDKPLGVQQK-----YLVVTCNYEAR 71
Query: 61 NYGVKRSMRGDEAKEVCPQIELVQVPVARGKADLSSYRNAGSEVVSILAR-KGRCERASI 119
GVK+ M +AKE CPQ+ LV DL+ YR +V +L ER
Sbjct: 72 KLGVKKLMNVRDAKEKCPQLVLVNGE------DLTRYREMSYKVTELLEEFSPVVERLGF 125
Query: 120 DEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATVKEWLCRCDAD 179
DE ++DLT+ E L + + L V D
Sbjct: 126 DENFVDLTEMVEKRLQQLQSDELS------------------AVTVSGHVYNNQSINLLD 167
Query: 180 HRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVK 239
L G I E+R + + T AG+A NK+LAKL SG+ KP QQT + S +
Sbjct: 168 VLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQ 227
Query: 240 GLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 298
L+ SL IK++ +G K L+ LG+ +V DL FS L++ G + + ++
Sbjct: 228 HLIHSLNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSF 286
Query: 299 GISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 358
G V P+S SF + ++ + +L L R + Q+ R
Sbjct: 287 GEDNSPVILSGPPQSFSEEDSFKK---CSSEVEAKNKIEELLASLLNR----VCQDGRKP 339
Query: 359 HTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQ 417
HT+ L + S+ S+ CP+ + K+ +++ + + F +
Sbjct: 340 HTVRLI---IRRYSSEKHYGRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLF--RNM 394
Query: 418 GSHYSGWRITALSVSASKIVPVLSG 442
+ + +T LSV + + +
Sbjct: 395 VNVKMPFHLTLLSVCFCNLKALNTA 419
|
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... Length = 435 | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* Length = 520 | Back alignment and structure |
|---|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* Length = 459 | Back alignment and structure |
|---|
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} Length = 517 | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... Length = 352 | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A Length = 354 | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* Length = 434 | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} Length = 504 | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 Length = 221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| 4ecq_A | 435 | DNA polymerase ETA; transferase-DNA complex; HET: | 100.0 | |
| 3osn_A | 420 | DNA polymerase IOTA; hoogsteen base PAIR, protein- | 100.0 | |
| 4dez_A | 356 | POL IV 1, DNA polymerase IV 1; Y-family, transfera | 100.0 | |
| 1jx4_A | 352 | DNA polymerase IV (family Y); protein-DNA complex, | 100.0 | |
| 3bq0_A | 354 | POL IV, DBH, DNA polymerase IV; Y-family, lesion b | 100.0 | |
| 4f4y_A | 362 | POL IV, DNA polymerase IV; Y-family polymerase, tr | 100.0 | |
| 3gqc_A | 504 | DNA repair protein REV1; protein-DNA complex, DNA | 100.0 | |
| 3mfi_A | 520 | DNA polymerase ETA; DNA damage, DNA repair, DNA re | 100.0 | |
| 3pzp_A | 517 | DNA polymerase kappa; DNA nucleotidyltransferase, | 100.0 | |
| 1t94_A | 459 | Polymerase (DNA directed) kappa; replication, DNA | 100.0 | |
| 2aq4_A | 434 | DNA repair protein REV1; polymerase, PAD, N-digit, | 100.0 | |
| 1im4_A | 221 | DBH; DNA polymerase PALM, thumb, fingers, helix-ha | 100.0 | |
| 1unn_C | 115 | POL IV, DNA polymerase IV; beta-clamp, translesion | 98.92 | |
| 2kwv_A | 48 | RAD30 homolog B, DNA polymerase IOTA; ubiquitin-bi | 95.54 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 95.21 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 95.11 | |
| 3bqs_A | 93 | Uncharacterized protein; 10114F, NYSGXRC, PSI-2, s | 93.25 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 92.79 | |
| 3mab_A | 93 | Uncharacterized protein; NYSGXRC, PSI-2, structura | 92.76 | |
| 1z3e_B | 73 | DNA-directed RNA polymerase alpha chain; bacterial | 91.02 | |
| 3gfk_B | 79 | DNA-directed RNA polymerase subunit alpha; protein | 89.38 | |
| 1b22_A | 114 | DNA repair protein RAD51; DNA binding, riken struc | 89.38 | |
| 2khu_A | 108 | Immunoglobulin G-binding protein G, DNA polymerase | 88.64 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 88.07 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 87.67 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 86.66 | |
| 1qw2_A | 102 | Conserved hypothetical protein TA1206; structural | 85.32 | |
| 3k4g_A | 86 | DNA-directed RNA polymerase subunit alpha; bacteri | 85.1 | |
| 1vq8_Y | 241 | 50S ribosomal protein L32E; ribosome 50S, protein- | 81.74 | |
| 2nrt_A | 220 | Uvrabc system protein C; UVRC, endonuclease, RNAse | 81.66 | |
| 2kz3_A | 83 | Putative uncharacterized protein RAD51L3; RAD51D, | 81.57 | |
| 1coo_A | 98 | RNA polymerase alpha subunit; transcription regula | 80.52 |
| >4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-76 Score=659.08 Aligned_cols=411 Identities=43% Similarity=0.701 Sum_probs=338.7
Q ss_pred CCCCEEEEEeCCchhHhhhchhCCCCCCCcEEEEeccCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEEEcccc
Q 004805 9 SGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVA 88 (729)
Q Consensus 9 ~~~rvI~HIDmD~FyASVE~~~~P~LrgkPvaV~q~~~~~~g~ViA~SYeARk~GVk~GM~~~eA~~LCP~L~vv~Vp~~ 88 (729)
.+.|+|+||||||||||||++++|+|+|+||||++++.+++|+|+||||+||++||++||++++|+++||++++++++..
T Consensus 7 ~~~r~I~hiD~d~FyAsvE~~~~P~L~~kPvvV~~~~~~~~g~viA~syeAR~~GV~~gm~~~~A~~lcP~l~~~~~~~~ 86 (435)
T 4ecq_A 7 GQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRES 86 (435)
T ss_dssp SCSCCEEEEEETTHHHHHHHHHCGGGTTSCEEEEECSTTTTCEEEEECHHHHTTTCCTTCBHHHHHHHCTTCEEEECCEE
T ss_pred CCCcEEEEEccchHHHHHHhhhCccccCCcEEEeccCCCCCCeEEEeCHHHHHhCCCCCCcHHHHHHhCCCeEEeccccc
Confidence 46799999999999999999999999999999999876668899999999999999999999999999999999987766
Q ss_pred CCCCChHHHHHHHHHHHHHHHhcCCeeeeccceeEEecccchhHhh---hcCCCCCcchhhHHHhh-hhcccCccC----
Q 004805 89 RGKADLSSYRNAGSEVVSILARKGRCERASIDEVYLDLTDAAEAML---AETPPESLDEVDEEALK-SHILGLESK---- 160 (729)
Q Consensus 89 ~~k~d~~~Yr~~S~~I~~iL~~~~~vE~~SIDEafLDlT~~~~~~l---~~~~~~~~~~~~~~~~~-~~l~G~~~~---- 160 (729)
++|+||+.|+++|++|+++|.+|..||++||||+|||||++....| ...+.+ .+.++ .++.|....
T Consensus 87 ~~~~~~~~Y~~~S~~i~~il~~~~~vE~~SiDEafLDlT~~~~~~l~~l~g~~~~------~~~~~~~~~~g~~~~~~~~ 160 (435)
T 4ecq_A 87 RGKANLTKYREASVEVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPIS------ADLLPSTYIEGLPQGPTTA 160 (435)
T ss_dssp TTEECCHHHHHHHHHHHHHHHHHSCEEEEETTEEEEECHHHHHHHHHHHTTCCCC------GGGCTTEEETTCSCCCC--
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCceeecccceEEEECccchhhcchhccccccc------cccccccccccCCCccccc
Confidence 7778999999999999999999889999999999999999875432 111100 00000 000011000
Q ss_pred CCCCch-----hhhhhhhhc---cCcchhhhhhhhHHHHHHHHHHHHHhHhCCceeEeecCCHHHHHHhccCCCCCceee
Q 004805 161 DGNDSK-----ATVKEWLCR---CDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTT 232 (729)
Q Consensus 161 ~~~~~~-----~~~~~w~~~---~~~~~~d~ll~~~~~la~~IR~~I~~etGlt~S~GIA~NklLAKLAS~~~KPngqtv 232 (729)
.+.... .++..|++. ++.+|.|..|..|+.+|++||++|++++|||||||||+||++||||++++||+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ia~~Ir~~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~v 240 (435)
T 4ecq_A 161 EETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTL 240 (435)
T ss_dssp ---CSHHHHHHHHHHHHHHHCCTTCTTCHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEE
T ss_pred ccccchhhhhcccccccccccccccccchhhhhhHHHHHHHHHHHHHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEE
Confidence 000001 134456542 455678888999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhcccccCcccccCCCcHHHHHH-HHHHhCCcchhhhhcCCHHHHHHhhCCChHHHHHHHHhcCCCcccccccCC
Q 004805 233 VPFSSVKGLLDSLPIKKMKQLGGKLGTS-LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311 (729)
Q Consensus 233 v~~~~v~~fL~~LPI~~L~GIG~k~~~~-L~~~lGI~TigDLa~l~~~~L~~rFG~~~g~~L~~~arGiD~~~V~~~~~p 311 (729)
++++++.+||+++||++|||||++++.+ |+ .+||+|+|||+++|+..|+++||...|.+||++|+|+|.++|.+..++
T Consensus 241 v~~~~~~~~L~~lpv~~l~GiG~~~~~~lL~-~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ 319 (435)
T 4ecq_A 241 VSHGSVPQLFSQMPIRKIRSLGGKLGASVIE-ILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLP 319 (435)
T ss_dssp CCGGGHHHHHHTCBGGGSTTCSSHHHHHHHH-HHTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSC
T ss_pred EehhHHHHHHhhCCHHHhcCCCHHHHHHHHH-HcCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCC
Confidence 9999999999999999999999999877 65 999999999999999999999995579999999999999999998899
Q ss_pred cccccccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcCceeEEEEEEEeeccCCCCCCCCCcCcccccCCCcch
Q 004805 312 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTA 391 (729)
Q Consensus 312 KSis~s~tF~~p~di~~~eel~~~L~~LaeeL~~RLr~~~~~~~~~artLtL~lr~~~~~~~~s~~~~~srs~~L~~~t~ 391 (729)
|||+.+++|+.+.++.+.+++..+|..|+++|+.||+++..++++.|++|+|++++.+...+ ...+|+++++.+
T Consensus 320 ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~~~~~l~v~ir~~~~~~~----~~~~R~~~l~~~-- 393 (435)
T 4ecq_A 320 KTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRL----SSLRRCCALTRY-- 393 (435)
T ss_dssp SCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEEEEEETTCCSS----CSEEEEEECCSC--
T ss_pred CeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCceEEEEEEEEEeCCCCCC----ceeEEeccCCCC--
Confidence 99999999984324889999999999999999999998644468999999999998643222 335899999753
Q ss_pred hHHHhHHHHHHHHHHHhhcccCccccCCCCCCcceeEEEEEccCccc
Q 004805 392 KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 438 (729)
Q Consensus 392 ~i~~~a~~L~~aal~l~~~~~~~~~~~~~~~~~~IR~IGVsls~L~~ 438 (729)
++..|++.++.+|.+.+....+ ..| +.+||+|||++++|++
T Consensus 394 ----~~~~i~~~a~~L~~~~~~~~~~-~~~-~~pir~lgvs~s~f~~ 434 (435)
T 4ecq_A 394 ----DAHKMSHDAFTVIKNCNTSGIQ-TEW-SPPLTMLFLCATKFSA 434 (435)
T ss_dssp ----CHHHHHHHHHHHHGGGCCCSST-TEE-EEEEEEEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHHHHHhhcccc-ccC-CCCeeEEEEEEeeccc
Confidence 3456888888888876532111 011 3579999999999976
|
| >3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ... | Back alignment and structure |
|---|
| >4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ... | Back alignment and structure |
|---|
| >3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A | Back alignment and structure |
|---|
| >3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A* | Back alignment and structure |
|---|
| >3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens} | Back alignment and structure |
|---|
| >1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A* | Back alignment and structure |
|---|
| >2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A* | Back alignment and structure |
|---|
| >1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7 | Back alignment and structure |
|---|
| >1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1 | Back alignment and structure |
|---|
| >2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A | Back alignment and structure |
|---|
| >1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B | Back alignment and structure |
|---|
| >3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1 | Back alignment and structure |
|---|
| >1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1 | Back alignment and structure |
|---|
| >2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B* | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1qw2_A Conserved hypothetical protein TA1206; structural genomics, beta/alpha, antiparallel beta sandwich, protein structure initiative; 1.50A {Thermoplasma acidophilum} SCOP: d.249.1.1 | Back alignment and structure |
|---|
| >3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D | Back alignment and structure |
|---|
| >1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... | Back alignment and structure |
|---|
| >2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A | Back alignment and structure |
|---|
| >2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 729 | ||||
| d1jiha2 | 389 | e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeas | 8e-61 | |
| d1zeta2 | 273 | e.8.1.7 (A:27-299) DNA polymerase iota {Human (Hom | 3e-58 | |
| d1t94a2 | 333 | e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Ho | 5e-58 | |
| d1im4a_ | 209 | e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolob | 3e-28 | |
| d1jx4a2 | 240 | e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sul | 2e-26 | |
| d1jiha1 | 120 | d.240.1.1 (A:390-509) DNA polymerase eta {Baker's | 2e-21 |
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase eta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 207 bits (527), Expect = 8e-61
Identities = 85/368 (23%), Positives = 124/368 (33%), Gaps = 59/368 (16%)
Query: 8 SSGARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRS 67
S IAH+D++ F+ QVEQ + + P VQ+N +IAV Y AR YG+ R
Sbjct: 20 ESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWN-----SIIAVSYAARKYGISRM 74
Query: 68 MRGDEAKEVCPQIELVQVPVARG---------------------------KADLSSYRNA 100
EA + C + + V + K L YR
Sbjct: 75 DTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRE 134
Query: 101 GSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESL------DEVDEEALKSH 153
+ + I ERASIDEV+LDL ML L + ++
Sbjct: 135 SRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAF 194
Query: 154 ILGLESKDGNDSKATVKEWLCRCD------------ADHRDKLLACGVLIVTELRMQVLK 201
I G + + K + + D D +LA G + +R +
Sbjct: 195 IGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKD 254
Query: 202 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS--LPIKKMKQLGGKLGT 259
+T S G++ K + KLAS KP QT V + LD I LGG LG
Sbjct: 255 ILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGK 314
Query: 260 SLQNELGVTTVGDLLKFSE---DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 316
L + L + + E D + F + S + +
Sbjct: 315 ELIDVLDLPHENSIKHIRETWPDNAGQLKEFL-DAKVKQSDYDRSTSNIDPLKTADL--A 371
Query: 317 GKSFPGPR 324
K F R
Sbjct: 372 EKLFKLSR 379
|
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Length = 273 | Back information, alignment and structure |
|---|
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} Length = 333 | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 209 | Back information, alignment and structure |
|---|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Length = 240 | Back information, alignment and structure |
|---|
| >d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 120 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 729 | |||
| d1zeta2 | 273 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1t94a2 | 333 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1jx4a2 | 240 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1jiha2 | 389 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 100.0 | |
| d1im4a_ | 209 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 100.0 | |
| d1jx4a1 | 101 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 99.27 | |
| d1jiha1 | 120 | DNA polymerase eta {Baker's yeast (Saccharomyces c | 99.27 | |
| d1t94a1 | 105 | DNA polymerase kappa {Human (Homo sapiens) [TaxId: | 99.21 | |
| d1k1sa1 | 105 | DinB homolog (DBH) {Archaeon Sulfolobus solfataric | 99.17 | |
| d1zeta1 | 115 | DNA polymerase iota {Human (Homo sapiens) [TaxId: | 99.11 | |
| d1unnc_ | 111 | DNA polymerase IV {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 96.99 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 95.86 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 95.47 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 95.33 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 94.41 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 93.17 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 93.04 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 92.94 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 92.86 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 91.61 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 91.61 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 91.53 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 90.8 | |
| d1doqa_ | 69 | C-terminal domain of RNA polymerase alpha subunit | 88.17 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 88.15 | |
| d1qw2a_ | 102 | Hypothetical protein Ta1206 {Archaeon Thermoplasma | 84.18 | |
| d1lb2b_ | 72 | C-terminal domain of RNA polymerase alpha subunit | 83.91 | |
| d1z3eb1 | 67 | C-terminal domain of RNA polymerase alpha subunit | 83.8 |
| >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: Lesion bypass DNA polymerase (Y-family), catalytic domain domain: DNA polymerase iota species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-63 Score=523.74 Aligned_cols=271 Identities=35% Similarity=0.510 Sum_probs=235.9
Q ss_pred CCEEEEEeCCchhHhhhchhCCCCCCCcEEEEeccCCCCcEEEEcCHHHHHcCCCCCCCHHHHHhhCCCcEEEEccccCC
Q 004805 11 ARIIAHVDLDCFYVQVEQRKQPKLRGLPTAVVQYNEWKGGGLIAVGYEARNYGVKRSMRGDEAKEVCPQIELVQVPVARG 90 (729)
Q Consensus 11 ~rvI~HIDmD~FyASVE~~~~P~LrgkPvaV~q~~~~~~g~ViA~SYeARk~GVk~GM~~~eA~~LCP~L~vv~Vp~~~~ 90 (729)
+|+|+||||||||||||++++|+|+++||||.+ +|+|+||||+||++||++||++.+|+++||++++++
T Consensus 1 sRvI~hiD~d~FyasvE~~~~p~l~~~PvaV~~-----~g~v~a~sy~AR~~GVk~gm~~~~A~~~cP~l~v~~------ 69 (273)
T d1zeta2 1 SRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQ-----KYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN------ 69 (273)
T ss_dssp CCCEEEEEETTHHHHHHHHHCGGGTTSCCEEES-----SSBEEEECHHHHTTTCCSCBCHHHHHHTCTTCCCEE------
T ss_pred CcEEEEEcCChHHHHHHhHhCccccCCcEEEcC-----CcEEEEeCHHHHHhCCCCCCCHHHHHHhCccccccc------
Confidence 589999999999999999999999999999965 368999999999999999999999999999998775
Q ss_pred CCChHHHHHHHHHHHHHHHhc-CCeeeeccceeEEecccchhHhhhcCCCCCcchhhHHHhhhhcccCccCCCCCchhhh
Q 004805 91 KADLSSYRNAGSEVVSILARK-GRCERASIDEVYLDLTDAAEAMLAETPPESLDEVDEEALKSHILGLESKDGNDSKATV 169 (729)
Q Consensus 91 k~d~~~Yr~~S~~I~~iL~~~-~~vE~~SIDEafLDlT~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~ 169 (729)
++|++.|+++|++|+++|.+| +.||++||||+|||+|++.+..+.+...+.+. ......|+++....
T Consensus 70 ~~~~~~Y~~~S~~i~~~l~~~~~~ve~~SiDE~flDlt~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------- 137 (273)
T d1zeta2 70 GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELS---AVTVSGHVYNNQSI--------- 137 (273)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCSCEEEETTTEEEEECHHHHHHHHHHSCSSGGG---GCCCCSEEGGGCCC---------
T ss_pred cccHHHHHHHHHHHHHHHHHhCCeeEEEcCcceEEeccccccccccccccchhh---cccccccccccccc---------
Confidence 268999999999999999996 89999999999999999886554433222111 00112234432110
Q ss_pred hhhhhccCcchhhhhhhhHHHHHHHHHHHHHhHhCCceeEeecCCHHHHHHhccCCCCCceeeccCCchhcccccC-ccc
Q 004805 170 KEWLCRCDADHRDKLLACGVLIVTELRMQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIK 248 (729)
Q Consensus 170 ~~w~~~~~~~~~d~ll~~~~~la~~IR~~I~~etGlt~S~GIA~NklLAKLAS~~~KPngqtvv~~~~v~~fL~~L-PI~ 248 (729)
...++.+..+..+..+|++||++|++++|||||+|||+||+|||||++++|||||+++.++++.+||+++ ||+
T Consensus 138 ------~~~d~~~~~~~~~~~~a~~ir~~I~~~~g~~~svGIa~nk~lAKlAs~~~KP~g~~vi~~~~~~~~l~~l~pv~ 211 (273)
T d1zeta2 138 ------NLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIK 211 (273)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHHHTTCSSGG
T ss_pred ------cchhhhhhhcccHHHHHHHHHHHHHHHhCCCeEeeecCcHHHHHHHhhccccccccchhhhhHHHHHhcCcchH
Confidence 1134556677888999999999999999999999999999999999999999999999999999999998 799
Q ss_pred ccCCCcHHHHHHHHHHhCCcchhhhhcCCHHHHHHhhCCChHHHHHHHHhcCCCcccccccCC
Q 004805 249 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 311 (729)
Q Consensus 249 ~L~GIG~k~~~~L~~~lGI~TigDLa~l~~~~L~~rFG~~~g~~L~~~arGiD~~~V~~~~~p 311 (729)
+|||||++++++|+ .+||+|++||++++...|+++||.+.|.+||++++|+|.+||.+..+|
T Consensus 212 ~l~GiG~~~~~~L~-~~GI~ti~dl~~~~~~~L~~~fG~~~g~~l~~~a~G~D~~pV~~~~~P 273 (273)
T d1zeta2 212 EIPGIGYKTAKCLE-ALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPP 273 (273)
T ss_dssp GSTTCCHHHHHHHH-TTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSC
T ss_pred HhcCCCHHHHHHHH-HhCCCcHHHHhcCCHHHHHHHHCHHHHHHHHHHHcCcCCCCCCCCCCC
Confidence 99999999999997 999999999999999999999998779999999999999999887665
|
| >d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1k1sa1 d.240.1.1 (A:240-344) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1zeta1 d.240.1.1 (A:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1qw2a_ d.249.1.1 (A:) Hypothetical protein Ta1206 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
| >d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|