Citrus Sinensis ID: 004807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------73
Protein Sequence
MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDTPQDLGQPLIN
Secondary Structure (PSIPRED)
cccEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccEEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEEcccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHcccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccEEcccccccEEEEEEEccccccccHHHHHHHHHHHHcccccHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHcHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEEHHEEcccccccccccccccccHHHcccHHHHHHHHHHccccccccccccHHHEHHHHHHHHHEEccccccHHHHHHHHHHcccccccEEEEEccHHHHHHEEEEccccccccccccccccHHHcccccccccHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccEEccHHHHHHHccccccccccEEEccccccccEEEEccccccccccccccHHHccccccccccccccccEEEEccccccccccccccccccccccccHHHHcccccHHHHHcccccccccEcccccccccEEEEEcccccEEEEcccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mdgirlndceSLEAFGVNKQKVVEEITRAYAHQIyvdgffngdphpgnflvskdpphrpilldfglTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTlffrtsapaneAFETVKNLSEQRAKNLKVIQEKMKLNQKevkrfnpvdafpgdiVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVginkepsvsaewiyskpihsdvEAKLRDFLVELGNDGKILGIQVCAykdgeviidtsagmlgrydprpvqpdslfpvfSVTKGITAGMLHWLvdngklkleENIANIWpefksngkdlIKVHHVLNHtsglhnvsvdlssenpllicdwdECLNRialsapetepgqeQLYHYLSFGWLCGGIIERASGKKFQEILEEGiiqplsidgelyigippgvesrlasltidtddlnkvsginnrpdlrlpssfqpdkisqLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALadggvvppphsrlskpplgshphipkfpshetskkqkGTKKELLAALKNktnnsehghkytkdleggshirtasgDTYARLINIetsssntsttdsisntdepqssnvrkifnnprihdaflgvgdygdlalpngrfglgfkryntrdgsyigfghsgmggstgfcdvnNRFAIAVTLNKMSFGATTGRIIHFVCselnlpvpedylrfaevehdtpqdlgqplin
Flexible Loop (DISEMBL)
mdgirlndcesleafgvnKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKlnqkevkrfnpvdafpgdiVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIpkfpshetskkqkgTKKELLAALknktnnsehghkytkdleggshIRTASGDTYARLINIEtsssntsttdsisntdepqssnvRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVehdtpqdlgqplin
Low Complexity Region (SEG)
MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSaralaryyaalaDGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLinietsssntsttdsisntdePQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDgsyigfghsgmggstgFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDTPQDLGQPLIN
Disordered region (IsUnstruct)
*******DCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSA********************************EVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPET*PGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKV*******************ISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGV***************************************************************************L****************************KIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEV**************
Disordered Region (DISOPRED)
*DGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPAN************************KLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSK******PHIPKFPSHETSKKQKGTKKELLAA********EHGHKYTKDLEGGSHIRTASGDTYARLINIETS************************FNNPRIHDAFLGVGDYGDLALPNGRFGLGFK**********GFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDY*************LGQPLI*
Disordered Region (DISEMBL)
MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFP************KELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETS******************SNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDTPQ********
Disordered Region (DISPRO)
MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKKELLAALKNKTNNSEHGHKYTKDLEG**********T***************************SSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDTPQDLGQPLIN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDTPQDLGQPLIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	729	2.2.26 [Sep-21-2011]
Q09621	473	Beta-lactamase domain-con	no	no	0.345	0.532	0.267	8e-21
Q9KX40	392	Esterase EstB OS=Burkhold	yes	no	0.229	0.426	0.295	2e-11
Q54TR5	668	Probable serine/threonine	yes	no	0.242	0.264	0.267	7e-11
Q55884	567	Uncharacterized protein s	N/A	no	0.137	0.176	0.372	1e-10
Q145N7	525	Probable ubiquinone biosy	yes	no	0.123	0.171	0.413	3e-10
B2SX38	525	Probable ubiquinone biosy	yes	no	0.123	0.171	0.413	3e-10
Q63X97	525	Probable ubiquinone biosy	yes	no	0.123	0.171	0.402	4e-10
A3N5V1	525	Probable ubiquinone biosy	yes	no	0.123	0.171	0.402	4e-10
Q3JVZ2	525	Probable ubiquinone biosy	yes	no	0.123	0.171	0.402	4e-10
A3NRJ7	525	Probable ubiquinone biosy	yes	no	0.123	0.171	0.402	4e-10

>sp|Q09621|LACT2_CAEEL Beta-lactamase domain-containing protein 2 OS=Caenorhabditis elegans GN=lact-2 PE=4 SV=1

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 128/273 (46%), Gaps = 21/273 (7%)

Query: 249 GIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL 308
           G  +  Y    VI+D   G   +   R   PD+   VFS TK + A  +  LVD G +  
Sbjct: 91  GASITVYHKDRVIVDLQGGYADKASGRKWTPDTRTVVFSTTKAVGAVCVAMLVDRGHISY 150

Query: 309 EENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSA 368
           ++ ++ IWPEF  NGK+ I +  +++H +GL  + + ++ E+     D+++    IA   
Sbjct: 151 DDKMSKIWPEFAQNGKENITIDWLMSHRAGLAALDMPITIEDA---NDFEKMSEVIASQK 207

Query: 369 PETEPGQEQLYHYLSFGWLCGGIIERA--SGKKFQEILEEGIIQPLSIDGELYIGIPPGV 426
           P  EPG +  YH +++GW+   I+ R+   G+      +E +     ID   +IG+PP  
Sbjct: 208 PNWEPGTKSGYHAITYGWIVDQIVRRSDPKGRSVGRFFKEEVADVHGID--FHIGLPPSE 265

Query: 427 ESRLASLTIDTDDLNKVSGINNRPDLRLPSSF----QPDKISQLAAITPA---------V 473
           E  ++ L++ +  L+ V  I + P + +  +      P+ I++  A  P           
Sbjct: 266 EHTVSRLSMPS-TLHLVREIVHDPRVLIVLAVFNLRPPNSIARKIAANPTWFKLEQDVNT 324

Query: 474 FNMLNIRRAIIPAANGHCSARALARYYAALADG 506
           FN   +      AA G   +R LAR ++ +  G
Sbjct: 325 FNNPTLHAMEQVAALGITKSRDLARLFSLVQQG 357

Caenorhabditis elegans (taxid: 6239)

>sp|Q9KX40|ESTB_BURGA Esterase EstB OS=Burkholderia gladioli GN=estB PE=1 SV=1

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 16/183 (8%)

Query: 246 KILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGK 305
           +++G      + GE++   + G+  R   RP++ D+LF + SVTK I A  +  LV  G+
Sbjct: 34  RLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGE 93

Query: 306 LKLEENIANIWPEFKSNGKD----LIKVHHVLNHTSGLHNVSVD----------LSSENP 351
           L L+  +    PEF+    D    L+ +HH+L HTSGL    ++          +S    
Sbjct: 94  LALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGID 153

Query: 352 LLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQP 411
           L   D DE L R+A +     PG    Y  L+   + G ++ERA+G+     ++  + QP
Sbjct: 154 LRDFDLDENLRRLASAPLSFAPGSGWQYS-LALD-VLGAVVERATGQPLAAAVDALVAQP 211

Query: 412 LSI 414
           L +
Sbjct: 212 LGM 214

Acts on short-chain (C4-C6) fatty acid esters and triglycerides, including tertiary alcohol esters. Activity on p-nitrophenyl esters is generally higher than on o-nitrophenyl esters. Lacks beta-lactamase activity; it hydrolyzes the ester bond of cephalosporin substrates but there is no opening of the beta-lactam ring observed.

Burkholderia gladioli (taxid: 28095)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q54TR5|ABKB_DICDI Probable serine/threonine-protein kinase abkB OS=Dictyostelium discoideum GN=abkB PE=3 SV=1

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 25/202 (12%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP- 59
           + G+R+++ E L+  G++ +++    +  +A QI+V GF + DPHPGN LV K P  +P 
Sbjct: 436 IHGVRIDNREGLDKLGIDLKELYYLFSDIFAQQIFVHGFLHSDPHPGNLLVRKTPNGKPD 495

Query: 60  -ILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAF-AEMGLRLRLDVPEQAMEVST 117
            +LLD GL KK+  +++     ++ +   GD  A  S F AE     RL     A  +  
Sbjct: 496 LVLLDHGLYKKIDENVRLDFCHLWKSLCLGD--AKTSEFYAE-----RLGAGIYAKHLGI 548

Query: 118 LFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRV 177
           L     + + E    +K   E + + L VI E +K               P +I++  + 
Sbjct: 549 LLNLNPSKSRENLRNMK--RELKDQTLVVINEILK-------------NLPKEILLVLKT 593

Query: 178 LNLLRGLSSTMNVRIVYLDIMR 199
            NL+R +++   +   +L++ +
Sbjct: 594 NNLIRQITTHFGIENGFLNMAK 615

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0095 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           + GI+++D ++LE  G+N   V++    AY  Q+ VDGFF  DPHPGN  V  D     I
Sbjct: 252 LPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGFFQSDPHPGNMAV--DSQGDLI 309

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL 102
             DFG   ++    K  + + FFA    D   +L A   MGL
Sbjct: 310 FYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMGL 351

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia xenovorans (strain LB400) GN=ubiB PE=3 SV=1

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
           M G+ ++  E+L A GV+  K+  E    +  Q++ DGFF+ D HPGN  VS DP H  R
Sbjct: 243 MVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGR 302

Query: 59  PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
            I LDFG+   LS   K  LA+ F A  + D+
Sbjct: 303 YIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia xenovorans (strain LB400) (taxid: 266265)

>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
           M G+ ++  E+L A GV+  K+  E    +  Q++ DGFF+ D HPGN  VS DP H  R
Sbjct: 243 MVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPAHFGR 302

Query: 59  PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
            I LDFG+   LS   K  LA+ F A  + D+
Sbjct: 303 YIALDFGIIGALSDFDKNYLAQNFLAFFKRDY 334

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527)

>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain K96243) GN=ubiB PE=3 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
           M G+ ++  ++L A GV+  K+  E    +  Q++ DGFF+ D HPGN  VS DP H  R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302

Query: 59  PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
            I LDFG+   LS   K  LA+ F A  + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain K96243) (taxid: 272560)

>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain 668) GN=ubiB PE=3 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
           M G+ ++  ++L A GV+  K+  E    +  Q++ DGFF+ D HPGN  VS DP H  R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302

Query: 59  PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
            I LDFG+   LS   K  LA+ F A  + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain 668) (taxid: 320373)

>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
           M G+ ++  ++L A GV+  K+  E    +  Q++ DGFF+ D HPGN  VS DP H  R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302

Query: 59  PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
            I LDFG+   LS   K  LA+ F A  + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain 1710b) (taxid: 320372)

>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--R 58
           M G+ ++  ++L A GV+  K+  E    +  Q++ DGFF+ D HPGN  VS DP H  R
Sbjct: 243 MTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNIQVSLDPKHFGR 302

Query: 59  PILLDFGLTKKLSSSMKQALAKMFFAAAEGDH 90
            I LDFG+   LS   K  LA+ F A  + D+
Sbjct: 303 YIALDFGIVGALSDFDKNYLAQNFLAFFKRDY 334

Required, probably indirectly, for the hydroxylation of 2-octaprenylphenol to 2-octaprenyl-6-hydroxy-phenol, the fourth step in ubiquinone biosynthesis.

Burkholderia pseudomallei (strain 1106a) (taxid: 357348)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	729
225429826	978	PREDICTED: uncharacterized protein LOC10	0.990	0.738	0.720	0.0
255574137	965	Ubiquinone biosynthesis protein coq-8, p	0.986	0.745	0.713	0.0
297812683	1011	ABC1 family protein [Arabidopsis lyrata	0.979	0.706	0.682	0.0
224115612	987	predicted protein [Populus trichocarpa]	0.993	0.733	0.697	0.0
18420844	1009	ABC1 family protein [Arabidopsis thalian	0.980	0.708	0.679	0.0
334187920	1040	ABC1 family protein [Arabidopsis thalian	0.980	0.687	0.679	0.0
224121392	972	predicted protein [Populus trichocarpa]	0.969	0.727	0.714	0.0
356563711	966	PREDICTED: uncharacterized protein LOC10	0.978	0.738	0.682	0.0
356552616	965	PREDICTED: uncharacterized protein LOC10	0.978	0.738	0.691	0.0
356563713	994	PREDICTED: uncharacterized protein LOC10	0.978	0.717	0.682	0.0

>gi|225429826|ref|XP_002283043.1| PREDICTED: uncharacterized protein LOC100242392 [Vitis vinifera]

 Score = 1083 bits (2802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/740 (72%), Positives = 620/740 (83%), Gaps = 18/740 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           MDG+RLNDCESL+AFG++KQK+VEEITRAYAHQIYVDGFFNGDPHPGNFLVSK+PPHRP+
Sbjct: 246 MDGVRLNDCESLKAFGIDKQKLVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKEPPHRPV 305

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFGLTK LSSSMKQALAK+F A+AEGDHVALLSA +EMGLRLRLD+P+QAMEV+T+FF
Sbjct: 306 LLDFGLTKSLSSSMKQALAKLFLASAEGDHVALLSALSEMGLRLRLDLPDQAMEVATVFF 365

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
           R+S PA+EA E +++LS+QR KN+KVIQEKMKLN+KEVKRFNPVDAFPGDIVIF+RVLNL
Sbjct: 366 RSSTPASEALENMRSLSKQRTKNMKVIQEKMKLNKKEVKRFNPVDAFPGDIVIFARVLNL 425

Query: 181 LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
           LRGLS+ M+VRI YLDIMRPFAE VLQ  INK P+V+++WIY  P+HSDVE KLR  LVE
Sbjct: 426 LRGLSTIMDVRISYLDIMRPFAESVLQGYINKGPAVNSQWIYDTPVHSDVETKLRRLLVE 485

Query: 241 LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
           LGND KILGIQVCAYKDGEVIIDT+AG+LGRYDPRPVQPDSLFPVFSVTKGITAGM+HWL
Sbjct: 486 LGNDDKILGIQVCAYKDGEVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGITAGMIHWL 545

Query: 301 VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
           VD GKLKL E+IANIWPEF SN K+LIKVHHVL HTSGL N   D+S ENPLL+C+WDEC
Sbjct: 546 VDKGKLKLGESIANIWPEFGSNKKELIKVHHVLTHTSGLQNALGDISRENPLLMCEWDEC 605

Query: 361 LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
           LNRIA+S PETEPG EQLYHYLSFGWLCGGIIE ASGKKFQEILEE  I+PL I+GELY+
Sbjct: 606 LNRIAMSVPETEPGHEQLYHYLSFGWLCGGIIEHASGKKFQEILEEAFIRPLQIEGELYV 665

Query: 421 GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
           GIPPGVESRLA+LT+DTDD+ K+S  +NRPD  LP SF  + IS+L  + PA+FN LNIR
Sbjct: 666 GIPPGVESRLATLTVDTDDVRKLSVYSNRPD--LPVSFTSN-ISELVTVLPALFNTLNIR 722

Query: 481 RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQK 540
           R+IIP+ANGHCSARALARYYA LADGG++PPPHS  SKPPLGSHPHIP FPS +TSKKQK
Sbjct: 723 RSIIPSANGHCSARALARYYATLADGGILPPPHSTSSKPPLGSHPHIPSFPSQKTSKKQK 782

Query: 541 GTKKELLAALKNKTN----NSEHGHKYTKDLEGGSHIRTASGDTYARL------INIETS 590
           G K + +AA  NKTN    N++ G + +KD     + R A  D + R        +  T 
Sbjct: 783 GGKSKDVAAASNKTNIHEQNTDDGSRSSKD---SCYNRKARCDNHGRFPHDSGSSSESTV 839

Query: 591 SSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTR 650
           S+N     S  N D+   S+  KIF+NPRIHDAFLGVG+Y +   P+G+FGLGFK  +++
Sbjct: 840 SNNGHRIGSTENGDDSPKSDT-KIFSNPRIHDAFLGVGEYENYGFPSGKFGLGFKSCSSK 898

Query: 651 DGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYL 710
           DG+ +GFGHSGMGGSTG+CD+NN+FAIAVTLNKMS G  TG+II F+CSELNLPVPEDY 
Sbjct: 899 DGTLLGFGHSGMGGSTGYCDINNKFAIAVTLNKMSLGGVTGKIIQFICSELNLPVPEDYS 958

Query: 711 RFAEVEHDTPQ-DLGQPLIN 729
           RF+  E    Q ++ +PLIN
Sbjct: 959 RFSGSEKPEEQSNVWRPLIN 978

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574137|ref|XP_002527984.1| Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis] gi|223532610|gb|EEF34396.1| Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/729 (71%), Positives = 617/729 (84%), Gaps = 10/729 (1%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           MDGIRLND ESLEA+GV+KQKVVEEITRAYA+QIY+DGFFNGDPHPGNFLVSKDP HRP+
Sbjct: 247 MDGIRLNDLESLEAYGVDKQKVVEEITRAYAYQIYIDGFFNGDPHPGNFLVSKDPQHRPV 306

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFGLTKK+SSS+KQALAKMF A+ EGDHVALLSAFAEMGL+LRLD+PEQAMEV+ +FF
Sbjct: 307 LLDFGLTKKISSSIKQALAKMFLASVEGDHVALLSAFAEMGLKLRLDLPEQAMEVTNVFF 366

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
           RTS PANEAFE +K+L+EQR+KN+KVIQEKMKL+QKEVKRFNPVDAFPGDIVIFSRVLNL
Sbjct: 367 RTSTPANEAFENMKSLAEQRSKNMKVIQEKMKLSQKEVKRFNPVDAFPGDIVIFSRVLNL 426

Query: 181 LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
           LRGLSSTMNVRI+Y +IMRPFAE+ LQ  INK P+V+A+WI++ P+HSDVE KLR  L+E
Sbjct: 427 LRGLSSTMNVRIIYQEIMRPFAEFALQGNINKGPTVNAQWIHNTPVHSDVETKLRQLLIE 486

Query: 241 LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
           LGN+ KILGIQVCAYKDGEVIIDT+AG+LGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL
Sbjct: 487 LGNEDKILGIQVCAYKDGEVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 546

Query: 301 VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
           VDNGK+KL++++ANIWP+F ++GKDLIKV+HVLNHTSGLHN   +L  ENP+ +C+WDEC
Sbjct: 547 VDNGKVKLDDSVANIWPQFGTSGKDLIKVYHVLNHTSGLHNALSNLREENPMQLCNWDEC 606

Query: 361 LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
           LN+I LS PETEPG+EQLYHYLSFGWLCGGIIE ASGK+FQEILEE II+PL I+GELY+
Sbjct: 607 LNQICLSVPETEPGKEQLYHYLSFGWLCGGIIEHASGKRFQEILEEAIIRPLKIEGELYV 666

Query: 421 GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
           GIPPGVESRLA+L +D +DL+K+  + +RPD  LPS+FQP  I+QL    PA+FNML +R
Sbjct: 667 GIPPGVESRLATLMVDMNDLSKLVEMRSRPD--LPSTFQPSNITQLLTTVPALFNMLIVR 724

Query: 481 RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQK 540
           RA IPAANGHCSARALARYYAALADGG+ PPPHS  +KP LGSHPHIPKF S +T KKQK
Sbjct: 725 RATIPAANGHCSARALARYYAALADGGLTPPPHSSFTKPALGSHPHIPKFSSEKTPKKQK 784

Query: 541 GTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSI 600
           G +KE+    K ++  S++   + KDLE G++      D Y RL      SS+ S  DS 
Sbjct: 785 GKRKEVTTTSKKRS--SDYSRNHNKDLEEGNN----GNDGYTRLAT--DGSSSASAADSF 836

Query: 601 SNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHS 660
           ++ D  +  NV +IF +PRIHDAFLGVG+Y +LA+PNG+FGLGF+R ++ DGS IGFGHS
Sbjct: 837 ASGDGNKRDNVTRIFIDPRIHDAFLGVGEYENLAVPNGKFGLGFRRNSSNDGSLIGFGHS 896

Query: 661 GMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDTP 720
           GMGGSTGFCD+ NRFAIAVT+NK+S G  T +I   VCSE+N+P+PE+     E   D  
Sbjct: 897 GMGGSTGFCDIKNRFAIAVTVNKLSVGFVTRKIAELVCSEVNVPLPEELSISGERGPDLE 956

Query: 721 QDLGQPLIN 729
            ++G+PLIN
Sbjct: 957 LNIGKPLIN 965

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812683|ref|XP_002874225.1| ABC1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297320062|gb|EFH50484.1| ABC1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/733 (68%), Positives = 602/733 (82%), Gaps = 19/733 (2%)

Query: 1    MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
            MDGIRLND ESL+AFGV+KQK+VEEITRAYAHQI+VDGFFNGDPHPGNFLVSK+P H PI
Sbjct: 294  MDGIRLNDVESLDAFGVDKQKIVEEITRAYAHQIFVDGFFNGDPHPGNFLVSKEPQHLPI 353

Query: 61   LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
            LLDFGLTKK+S S+KQALAKMF A+AEGD VALLSAFAEMGL+LRLD+P+QAM V+ LFF
Sbjct: 354  LLDFGLTKKISHSLKQALAKMFLASAEGDQVALLSAFAEMGLKLRLDMPDQAMSVAGLFF 413

Query: 121  RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
            R+S P+NEA +T+K L++QR +N+KVIQEKM+LNQKEVKRFNP+DAFPGDIVIF+RV+NL
Sbjct: 414  RSSTPSNEAMKTLKTLNDQRVQNMKVIQEKMQLNQKEVKRFNPIDAFPGDIVIFARVINL 473

Query: 181  LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
            LRGLSSTMNVRIVYLDIMRPFAE VL   I++ P+V A WI+  PIHSDVE+K+R  L E
Sbjct: 474  LRGLSSTMNVRIVYLDIMRPFAESVLLGSISRGPTVDAHWIHESPIHSDVESKVRKLLAE 533

Query: 241  LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
            LG+  KILGIQVCAYKDG+VIIDT+AG+LGRYDPRPVQPDSLFPVFSVTKG+TAGM+HWL
Sbjct: 534  LGSIQKILGIQVCAYKDGKVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGVTAGMIHWL 593

Query: 301  VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
            VD  KL+L++ +ANIWP F SNGKD IKV+HVLNHTSG+HN + D   ENPLLICDWDEC
Sbjct: 594  VDKRKLQLDQTVANIWPGFGSNGKDTIKVNHVLNHTSGMHN-AFDPVGENPLLICDWDEC 652

Query: 361  LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
            L RIA S+PETEPG +Q YHYL+FGWLCGGI+E ASGKKFQEILEE I++PL IDGELYI
Sbjct: 653  LKRIANSSPETEPGNQQFYHYLTFGWLCGGILEYASGKKFQEILEESIVKPLKIDGELYI 712

Query: 421  GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
            GIPPGVESRLA+LT+DTD+++K+S I ++P+  LPS+FQPDKI QLA   P +FN LN+R
Sbjct: 713  GIPPGVESRLATLTLDTDEMSKLSSIASQPE--LPSTFQPDKILQLATNLPVLFNTLNVR 770

Query: 481  RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPS-HETSKKQ 539
            RAIIPAANGHCSARALARYYA LADGG+VPPPHS LS+PPLGSH H+PKF S  +T+KK+
Sbjct: 771  RAIIPAANGHCSARALARYYATLADGGLVPPPHSSLSQPPLGSHTHVPKFTSLKDTTKKR 830

Query: 540  KGTKKELLAALKNKTNNSEHGHKYT-KDLEGGSHIRTASGDTYARLINIETSSSNTSTTD 598
            K   KE+ A  K K+ + +    Y  K          ++ ++ ARL++  + +  T    
Sbjct: 831  KS--KEMAATEKRKSKDHQERRLYDGKQFTSAGSSGESNTESLARLVDTSSYAGKTEI-- 886

Query: 599  SISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFG 658
               N+D+ Q  ++  +F+NP IHDAF+G GDY  L +P+G+FGLGFKR  ++DGS +GFG
Sbjct: 887  ---NSDDHQ-HDIHNLFSNPSIHDAFMGAGDYSGLVVPDGKFGLGFKRVISQDGSLVGFG 942

Query: 659  HSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHD 718
            HSGMGGSTGFCD+ NRF+IAVTLNKMS G  T +I+  VCSELN+P+P+D+     +  D
Sbjct: 943  HSGMGGSTGFCDIKNRFSIAVTLNKMSMGGVTAKIVKLVCSELNIPLPKDF----SLSTD 998

Query: 719  TPQD--LGQPLIN 729
            T  D  +G PLIN
Sbjct: 999  TGPDSQMGTPLIN 1011

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115612|ref|XP_002332099.1| predicted protein [Populus trichocarpa] gi|222874919|gb|EEF12050.1| predicted protein [Populus trichocarpa]

 Score = 1033 bits (2672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/746 (69%), Positives = 604/746 (80%), Gaps = 22/746 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           MDGIRLND ESLEA G N QK+VEEITRA+AHQIYVDGFFNGDPHPGNFLVSK+PPHRPI
Sbjct: 247 MDGIRLNDFESLEACGANNQKIVEEITRAFAHQIYVDGFFNGDPHPGNFLVSKEPPHRPI 306

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFGLTK++SSSMKQ+LAKMF A AEGDHVALLS+F+EMGL+LRLD PEQAM+  ++FF
Sbjct: 307 LLDFGLTKRISSSMKQSLAKMFLATAEGDHVALLSSFSEMGLKLRLDFPEQAMDFISVFF 366

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNP-------------VDAF 167
           RTS  A+EA E  K+L EQRA+N+KV+QEKM L+QKEVKRFNP             +DAF
Sbjct: 367 RTSTSASEAAEYAKSLGEQRARNMKVLQEKMNLSQKEVKRFNPASPSITLFYFYQYIDAF 426

Query: 168 PGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIH 227
           PGD+VIFSRV+ LLRGLS+T++ RIVY D+MRPFAE VLQ  I K PS +A+WI   P+H
Sbjct: 427 PGDMVIFSRVIGLLRGLSTTLDARIVYHDVMRPFAESVLQDKIAKGPSDNAQWINDTPVH 486

Query: 228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFS 287
           SDVEAKLR  LVELGND KILGIQVCAYKDGEVIIDT+AG+LGRYDPRPVQPDSLFPVFS
Sbjct: 487 SDVEAKLRQILVELGNDDKILGIQVCAYKDGEVIIDTAAGVLGRYDPRPVQPDSLFPVFS 546

Query: 288 VTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLS 347
           VTKGI AGMLHWLVDNGKL L ENIANIWPEF +NGK+LIKVHHVLNHTSGL N   +L 
Sbjct: 547 VTKGIAAGMLHWLVDNGKLNLNENIANIWPEFGTNGKNLIKVHHVLNHTSGLQNALANLR 606

Query: 348 SENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEG 407
            ENPLL+ DWDECL RIA+SAPETEPGQEQLYHYLSFGWLCGGIIE ASGKKFQEILEE 
Sbjct: 607 EENPLLMADWDECLKRIAMSAPETEPGQEQLYHYLSFGWLCGGIIEHASGKKFQEILEEA 666

Query: 408 IIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA 467
           I++PL+I+GELY+GIPPGVESRLASLT+D DD +K+S I +RP+   PS+FQP+ ISQL 
Sbjct: 667 IVRPLNIEGELYVGIPPGVESRLASLTLDKDDFSKLSKIASRPE--FPSTFQPENISQLV 724

Query: 468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHI 527
              PA+FNMLN+RRAIIP ANGHCSARALARYYAAL DGG+VPPPHS LS PPLG+HPHI
Sbjct: 725 TAVPALFNMLNVRRAIIPGANGHCSARALARYYAALVDGGLVPPPHSSLSMPPLGTHPHI 784

Query: 528 PKFPSHETSKKQKGTKKELL-AALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLIN 586
           PKFPS  TSKKQKG K +   +A K K N  E    ++ D + G     ++ D Y RL N
Sbjct: 785 PKFPSEITSKKQKGKKIKAAGSASKKKGNGYELKMNHSNDFKDGGE---SNSDGYTRLAN 841

Query: 587 IETSSSNTSTT---DSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLG 643
               SS++S        + ++  + +N  KIFNNPRIHD F+GVG+Y +L LPNG+FGLG
Sbjct: 842 DSAGSSSSSDASPPKGFAASENSRQNNANKIFNNPRIHDEFMGVGEYRNLVLPNGKFGLG 901

Query: 644 FKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNL 703
           F+R+++ DGS+ GFGHSGMGGSTGFCD+ NRFAIAVTLNKMS G  T RI+ FVCSELN+
Sbjct: 902 FRRFSSSDGSFYGFGHSGMGGSTGFCDIKNRFAIAVTLNKMSLGTATRRIVQFVCSELNV 961

Query: 704 PVPEDYLRFAEVEHDTPQDLGQPLIN 729
           P+P+++   +E   D    + +PLIN
Sbjct: 962 PLPDEFAVLSETAPDEELSIARPLIN 987

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420844|ref|NP_568458.1| ABC1 family protein [Arabidopsis thaliana] gi|16649083|gb|AAL24393.1| Unknown protein [Arabidopsis thaliana] gi|33589758|gb|AAQ22645.1| At5g24810/F6A4.20 [Arabidopsis thaliana] gi|332005981|gb|AED93364.1| ABC1 family protein [Arabidopsis thaliana]

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/730 (67%), Positives = 602/730 (82%), Gaps = 15/730 (2%)

Query: 1    MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
            MDG+RLND ESL+AFGV+KQK+VEEITRAYAHQI+VDGFFNGDPHPGNFLVSK+P HRPI
Sbjct: 294  MDGVRLNDVESLDAFGVDKQKIVEEITRAYAHQIFVDGFFNGDPHPGNFLVSKEPQHRPI 353

Query: 61   LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
            LLDFGL+KK+S S+KQALAKMF A+AEGD VALLSAFAEMGL+LRLD+P+QAM V+ LFF
Sbjct: 354  LLDFGLSKKISHSLKQALAKMFLASAEGDQVALLSAFAEMGLKLRLDMPDQAMSVAGLFF 413

Query: 121  RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
            R+S P++EA +T K L++QR +N+KVIQEKM+LNQKEVKRFNP+DAFPGDIVIF+RV+NL
Sbjct: 414  RSSTPSSEAMKTFKTLNDQRVQNMKVIQEKMQLNQKEVKRFNPIDAFPGDIVIFARVINL 473

Query: 181  LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
            LRGLSSTMNVRIVYLDIMRPFAE VL   I++ P+V A WI+  PIHSDVE+K+R  L E
Sbjct: 474  LRGLSSTMNVRIVYLDIMRPFAESVLLGSISRGPTVDAHWIHDSPIHSDVESKVRKLLAE 533

Query: 241  LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
            LG+  KILGIQVCAYKDG+VIIDT+AG+LGRYDPRPVQPDSLFPVFSVTKG+TAGM+HWL
Sbjct: 534  LGSIQKILGIQVCAYKDGKVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGVTAGMIHWL 593

Query: 301  VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
            VD  KL+L++ +AN+WP F SNGKD IKVHHVLNHTSG+ N S D   ENPLLICDWDEC
Sbjct: 594  VDKRKLQLDQTVANMWPGFGSNGKDTIKVHHVLNHTSGMQN-SFDPVGENPLLICDWDEC 652

Query: 361  LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
            L RIA S+PETEPG +Q YHYL+FGWLCGGI+E ASGKK QEILEE I++PL+IDGELYI
Sbjct: 653  LKRIANSSPETEPGSQQSYHYLTFGWLCGGILEYASGKKLQEILEESIVKPLNIDGELYI 712

Query: 421  GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
            GIPPGVESRLA+LT DTD+++K+S I ++P+  LPS+FQPDKI Q+A   P +FN LN+R
Sbjct: 713  GIPPGVESRLATLTFDTDEMSKLSSIASQPE--LPSTFQPDKIIQMATNLPVLFNTLNVR 770

Query: 481  RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQK 540
            RAIIPAANGHCSARALARYYA LADGG+VPPPHS LS+PPLGSH H+PKF S + + K+K
Sbjct: 771  RAIIPAANGHCSARALARYYATLADGGLVPPPHSSLSQPPLGSHTHVPKFTSLKDTTKKK 830

Query: 541  GTKKELLAALKNKTNNSEHGHKY-TKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDS 599
               KE+ A  K K+ + +    Y  K     S  R ++ ++ ARL++  +S+  T     
Sbjct: 831  -KGKEMAATEKGKSKDHQERKLYDEKQFMSASSSRESNTESLARLVDTNSSAGKTEI--- 886

Query: 600  ISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGH 659
              N+D+ Q  ++  +F+NPRIHDAF+G GDY  L +P+G+FGLGFKR  ++DGS +GFGH
Sbjct: 887  --NSDDHQ-HDIHNMFSNPRIHDAFMGAGDYSGLVVPDGKFGLGFKRAISQDGSLVGFGH 943

Query: 660  SGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDT 719
            SG+GGSTGFCD+NNRF+IAVTLNKMS G  T  I+  VCSELN+P+P+D+    ++  D+
Sbjct: 944  SGLGGSTGFCDINNRFSIAVTLNKMSMGGVTANIVKLVCSELNIPLPKDFA--TDIGADS 1001

Query: 720  PQDLGQPLIN 729
               +G PLIN
Sbjct: 1002 --QMGTPLIN 1009

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187920|ref|NP_001190388.1| ABC1 family protein [Arabidopsis thaliana] gi|332005982|gb|AED93365.1| ABC1 family protein [Arabidopsis thaliana]

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/730 (67%), Positives = 602/730 (82%), Gaps = 15/730 (2%)

Query: 1    MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
            MDG+RLND ESL+AFGV+KQK+VEEITRAYAHQI+VDGFFNGDPHPGNFLVSK+P HRPI
Sbjct: 325  MDGVRLNDVESLDAFGVDKQKIVEEITRAYAHQIFVDGFFNGDPHPGNFLVSKEPQHRPI 384

Query: 61   LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
            LLDFGL+KK+S S+KQALAKMF A+AEGD VALLSAFAEMGL+LRLD+P+QAM V+ LFF
Sbjct: 385  LLDFGLSKKISHSLKQALAKMFLASAEGDQVALLSAFAEMGLKLRLDMPDQAMSVAGLFF 444

Query: 121  RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
            R+S P++EA +T K L++QR +N+KVIQEKM+LNQKEVKRFNP+DAFPGDIVIF+RV+NL
Sbjct: 445  RSSTPSSEAMKTFKTLNDQRVQNMKVIQEKMQLNQKEVKRFNPIDAFPGDIVIFARVINL 504

Query: 181  LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
            LRGLSSTMNVRIVYLDIMRPFAE VL   I++ P+V A WI+  PIHSDVE+K+R  L E
Sbjct: 505  LRGLSSTMNVRIVYLDIMRPFAESVLLGSISRGPTVDAHWIHDSPIHSDVESKVRKLLAE 564

Query: 241  LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
            LG+  KILGIQVCAYKDG+VIIDT+AG+LGRYDPRPVQPDSLFPVFSVTKG+TAGM+HWL
Sbjct: 565  LGSIQKILGIQVCAYKDGKVIIDTAAGVLGRYDPRPVQPDSLFPVFSVTKGVTAGMIHWL 624

Query: 301  VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
            VD  KL+L++ +AN+WP F SNGKD IKVHHVLNHTSG+ N S D   ENPLLICDWDEC
Sbjct: 625  VDKRKLQLDQTVANMWPGFGSNGKDTIKVHHVLNHTSGMQN-SFDPVGENPLLICDWDEC 683

Query: 361  LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
            L RIA S+PETEPG +Q YHYL+FGWLCGGI+E ASGKK QEILEE I++PL+IDGELYI
Sbjct: 684  LKRIANSSPETEPGSQQSYHYLTFGWLCGGILEYASGKKLQEILEESIVKPLNIDGELYI 743

Query: 421  GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
            GIPPGVESRLA+LT DTD+++K+S I ++P+  LPS+FQPDKI Q+A   P +FN LN+R
Sbjct: 744  GIPPGVESRLATLTFDTDEMSKLSSIASQPE--LPSTFQPDKIIQMATNLPVLFNTLNVR 801

Query: 481  RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQK 540
            RAIIPAANGHCSARALARYYA LADGG+VPPPHS LS+PPLGSH H+PKF S + + K+K
Sbjct: 802  RAIIPAANGHCSARALARYYATLADGGLVPPPHSSLSQPPLGSHTHVPKFTSLKDTTKKK 861

Query: 541  GTKKELLAALKNKTNNSEHGHKY-TKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDS 599
               KE+ A  K K+ + +    Y  K     S  R ++ ++ ARL++  +S+  T     
Sbjct: 862  -KGKEMAATEKGKSKDHQERKLYDEKQFMSASSSRESNTESLARLVDTNSSAGKTEI--- 917

Query: 600  ISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGH 659
              N+D+ Q  ++  +F+NPRIHDAF+G GDY  L +P+G+FGLGFKR  ++DGS +GFGH
Sbjct: 918  --NSDDHQ-HDIHNMFSNPRIHDAFMGAGDYSGLVVPDGKFGLGFKRAISQDGSLVGFGH 974

Query: 660  SGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEHDT 719
            SG+GGSTGFCD+NNRF+IAVTLNKMS G  T  I+  VCSELN+P+P+D+    ++  D+
Sbjct: 975  SGLGGSTGFCDINNRFSIAVTLNKMSMGGVTANIVKLVCSELNIPLPKDFA--TDIGADS 1032

Query: 720  PQDLGQPLIN 729
               +G PLIN
Sbjct: 1033 --QMGTPLIN 1040

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121392|ref|XP_002330816.1| predicted protein [Populus trichocarpa] gi|222872618|gb|EEF09749.1| predicted protein [Populus trichocarpa]

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/710 (71%), Positives = 592/710 (83%), Gaps = 3/710 (0%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           MDGIRLND ESLEA G NKQK+VEEITRAYAHQIYVDGFFNGDPH GNFLVSK+PPHRPI
Sbjct: 245 MDGIRLNDLESLEACGANKQKIVEEITRAYAHQIYVDGFFNGDPHTGNFLVSKEPPHRPI 304

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFG TKK+SSSMKQ+LAKMF A AEGDHVALLS+FAEMGL+LRLD+PEQAM+V+++FF
Sbjct: 305 LLDFGFTKKISSSMKQSLAKMFLATAEGDHVALLSSFAEMGLKLRLDLPEQAMDVTSIFF 364

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
           R S PANEA E  K L+EQR +N+KV+QEKM L+QKEVKRFNP+DAFPGD+VIFSRV+NL
Sbjct: 365 RASTPANEAAEYAKTLNEQRTRNMKVLQEKMNLSQKEVKRFNPIDAFPGDMVIFSRVVNL 424

Query: 181 LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
           LRGLSST+N RIVY DIMRPFAE VLQ  I K PS +A+WIY  P+HS+VEAKLR  LVE
Sbjct: 425 LRGLSSTLNARIVYQDIMRPFAESVLQEKIAKGPSANAQWIYDTPVHSEVEAKLRQILVE 484

Query: 241 LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
           LGN+ KILGIQVCAYKDG+VIIDT+AG+LGRYDPRPVQPDSLF VFSVTKGITAGMLHWL
Sbjct: 485 LGNEDKILGIQVCAYKDGKVIIDTAAGVLGRYDPRPVQPDSLFSVFSVTKGITAGMLHWL 544

Query: 301 VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
           VDNGKL L+E+IANIWPEF +NGK+LIKVHHVLNHT+GL N   +L  ENPLL+ DWDEC
Sbjct: 545 VDNGKLNLDESIANIWPEFGTNGKNLIKVHHVLNHTAGLQNALDNLRKENPLLLTDWDEC 604

Query: 361 LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
           L +IA+S PETEPGQ QLYH+LSFGWLCGGIIE ASGKKFQEILEE  ++PL+I+GELY+
Sbjct: 605 LKQIAMSEPETEPGQVQLYHFLSFGWLCGGIIEHASGKKFQEILEEAFVRPLNIEGELYV 664

Query: 421 GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
           GIPPGVESRLASLTID DD +K+S I +     LPS+FQP+ ISQL     A+ NMLNIR
Sbjct: 665 GIPPGVESRLASLTIDKDDFSKLSKIGSLS--ALPSTFQPENISQLVTTLLALSNMLNIR 722

Query: 481 RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQK 540
           RAIIPAANGHCSARALARYYAAL D G+VPPPHS LS PPLGSHPHIPKF S  TSK Q 
Sbjct: 723 RAIIPAANGHCSARALARYYAALVDRGLVPPPHSSLSTPPLGSHPHIPKFSSEITSKMQN 782

Query: 541 GTK-KELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDS 599
           G K K + +A K K N  E   K +KD +     R ++ D Y       ++ + +S  +S
Sbjct: 783 GKKSKAVGSASKKKENGYEQKTKQSKDSKDNGSGRESNSDGYTSTSGSSSARNTSSPDNS 842

Query: 600 ISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGH 659
            +++++ + +NV  IFN+PRIHD F+G G+Y DL LPNG+FGLGFKR+++ DGS+ GFGH
Sbjct: 843 SASSNDSRKNNVIWIFNDPRIHDQFMGTGEYSDLVLPNGKFGLGFKRFSSSDGSFSGFGH 902

Query: 660 SGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDY 709
           SG+GGSTGFCD+ NRFAIAVTLNK+SFG  T +II FVCSELN+P+P+++
Sbjct: 903 SGLGGSTGFCDIENRFAIAVTLNKISFGTATRKIIQFVCSELNVPLPDEF 952

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563711|ref|XP_003550103.1| PREDICTED: uncharacterized protein LOC100775929 isoform 1 [Glycine max]

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/736 (68%), Positives = 598/736 (81%), Gaps = 23/736 (3%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           MDGIRLND ESL+A+GV+KQK+VEEITRAYAHQIYVDGFFNGDPHPGNFLVSK+ PHRPI
Sbjct: 247 MDGIRLNDLESLDAYGVDKQKLVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKESPHRPI 306

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFGLTKKLSS++KQALAKMF A+AEGDHVALLSAFAEMGL+LRLD+PEQAMEV+T+FF
Sbjct: 307 LLDFGLTKKLSSTIKQALAKMFLASAEGDHVALLSAFAEMGLKLRLDIPEQAMEVTTVFF 366

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
           R + PANE  +T+K+L++QR +N+KVIQEKM L++KE+KRFNPVDAFPGDIVIF RVLNL
Sbjct: 367 RATTPANEYHKTMKSLADQRDRNMKVIQEKMNLDKKEMKRFNPVDAFPGDIVIFGRVLNL 426

Query: 181 LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
           LRGLSSTMNVRIVY+DIMRPFAE VL   I+K PS++  WI+  P+HSDVE+KLR  L+E
Sbjct: 427 LRGLSSTMNVRIVYMDIMRPFAESVLSGYISKGPSLNDRWIFDSPVHSDVESKLRQLLIE 486

Query: 241 LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
           +GN+ KILGIQVCAYKDGE IIDT+AG+LG+YDPRPVQPDSLFPVFSVTKGITAGM+HWL
Sbjct: 487 MGNNDKILGIQVCAYKDGEAIIDTAAGVLGKYDPRPVQPDSLFPVFSVTKGITAGMIHWL 546

Query: 301 VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
           VDNG+L LEEN+A IWP F+SNGKD+IKVHHVLNHTSGLHN    ++ E+PLL+ DWD C
Sbjct: 547 VDNGQLNLEENVATIWPAFRSNGKDVIKVHHVLNHTSGLHNAMGGIAQEDPLLMLDWDGC 606

Query: 361 LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
           LNRI  S PETEPG+EQ YHYLSFGWLCGGIIE ASGKKFQEILEE I++PL I+GELY+
Sbjct: 607 LNRICQSIPETEPGKEQFYHYLSFGWLCGGIIEHASGKKFQEILEEAIVRPLHIEGELYV 666

Query: 421 GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
           GIPPGVESRLA+LT+DT +L+K+S + NR D  LPS+FQP +I+QLA   P  FN LN+R
Sbjct: 667 GIPPGVESRLAALTVDTAELSKISALANRAD--LPSTFQPQQIAQLATTLPVAFNTLNVR 724

Query: 481 RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHE----TS 536
           RAIIPAANGH SARALARYYAALADGG +PPPHS  SKP LGSHPHIPK  S +     +
Sbjct: 725 RAIIPAANGHVSARALARYYAALADGGKIPPPHSSASKPVLGSHPHIPKLSSSQKPPIKN 784

Query: 537 KKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTST 596
           +K  G + +  +   + TN+ E    + +D +              R  N E+SS    +
Sbjct: 785 RKCIGRRTQATSPSVSTTNSYEKVSSH-EDFDANE----------GRNTNSESSSGGDDS 833

Query: 597 TDSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIG 656
           +  I N    ++   RK++ NPRI D FLG G+Y +LALP   FGLGFKR++++DGS I 
Sbjct: 834 SSRIGNN--LRTHVARKVYKNPRIIDEFLGTGEYENLALPGESFGLGFKRFSSKDGSSIA 891

Query: 657 FGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVE 716
           FGHSGMGGSTGFCDV N F++AVTLNKMSFG  TG+I+  VCSELN+PVP+D+LRFA VE
Sbjct: 892 FGHSGMGGSTGFCDVTNNFSVAVTLNKMSFGGVTGKIVQLVCSELNIPVPDDFLRFA-VE 950

Query: 717 HDTPQD---LGQPLIN 729
              P +   +G+P+IN
Sbjct: 951 QSGPDEQLSMGRPIIN 966

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552616|ref|XP_003544660.1| PREDICTED: uncharacterized protein LOC100802638 [Glycine max]

 Score = 1008 bits (2605), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/735 (69%), Positives = 598/735 (81%), Gaps = 22/735 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           MDGIRLND ESLEA+GV+KQK+VEEITRAYAHQIY+DGFFNGDPHPGNFLVSK+ PHRPI
Sbjct: 247 MDGIRLNDLESLEAYGVDKQKLVEEITRAYAHQIYIDGFFNGDPHPGNFLVSKESPHRPI 306

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFGLTKKLSS++KQALAKMF A+AEGDHVALLSAFAEMGL+LRLD+PEQAMEV+ +FF
Sbjct: 307 LLDFGLTKKLSSTIKQALAKMFLASAEGDHVALLSAFAEMGLKLRLDIPEQAMEVTAVFF 366

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
           R + PANE  +T+K+L++QR +N+KVIQEKM L++KE+KRFNPVDAFPGDIVIF RVLNL
Sbjct: 367 RATTPANEYHKTMKSLADQRDRNMKVIQEKMNLDKKEMKRFNPVDAFPGDIVIFGRVLNL 426

Query: 181 LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
           LRGLSSTMNV+IVY+DIMRPFAE VL+  I+K PSV+  WI+  P+HSDVE+ LR  L+E
Sbjct: 427 LRGLSSTMNVQIVYMDIMRPFAESVLRGYISKGPSVNDRWIFDSPVHSDVESMLRQLLIE 486

Query: 241 LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
           +GN+ KILGIQVCAYKDGEVIIDT+AG+LG+YDPRPV+PDSLFPVFSVTKGITAGM+HWL
Sbjct: 487 MGNNDKILGIQVCAYKDGEVIIDTAAGVLGKYDPRPVKPDSLFPVFSVTKGITAGMIHWL 546

Query: 301 VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
           VDNG+L LEEN+ANIWP F SNGKD+IKVHHVLNHTSGLHN    ++ E+PLL+ DWD C
Sbjct: 547 VDNGQLNLEENVANIWPAFGSNGKDVIKVHHVLNHTSGLHNAMGSIAQEDPLLMFDWDGC 606

Query: 361 LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
           LNRI  S PETEPG+EQ YHYLSFGWLCGGIIE ASGKKFQEILEE I++PL I+GELY+
Sbjct: 607 LNRICQSVPETEPGKEQFYHYLSFGWLCGGIIEHASGKKFQEILEEAIVRPLHIEGELYV 666

Query: 421 GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
           GIPPGVESRLA+LT+DT DL+KVS + NRPD  LPS+FQP +I+QLA   P  FN LN+R
Sbjct: 667 GIPPGVESRLAALTVDTADLSKVSALANRPD--LPSTFQPQQIAQLATSLPVAFNTLNVR 724

Query: 481 RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKF---PSHETSK 537
           RAIIPAANGH SARALARYYAALADGG +PPPHS  SKP LGSHPHIPK    P    ++
Sbjct: 725 RAIIPAANGHVSARALARYYAALADGGKIPPPHSSASKPVLGSHPHIPKLSSSPKPPKTR 784

Query: 538 KQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTT 597
           K  G +K+  +   + TN+ E    Y             S     R  N E+SS + +++
Sbjct: 785 KCIGRRKQATSTSVSTTNSYEKVSSYDD-----------SEANKGRNTNSESSSGDDASS 833

Query: 598 DSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGF 657
             ISN    +S    K++ NPRI D FLG G+Y +LALP   FGLGFKR+ ++DGS I F
Sbjct: 834 SRISNN--LRSHVAGKVYKNPRIIDEFLGTGEYTNLALPGEGFGLGFKRFTSKDGSSIAF 891

Query: 658 GHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVEH 717
           GHSGMGGSTGFCDV N F+IAVTLNKMSFG  TG+I+  VCSELN+PVP+D+LRFA VE 
Sbjct: 892 GHSGMGGSTGFCDVTNNFSIAVTLNKMSFGGVTGKIVQLVCSELNIPVPDDFLRFA-VEQ 950

Query: 718 DTPQD---LGQPLIN 729
             P +   +G+P+IN
Sbjct: 951 SGPDEQLSMGRPIIN 965

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563713|ref|XP_003550104.1| PREDICTED: uncharacterized protein LOC100775929 isoform 2 [Glycine max]

 Score = 1007 bits (2603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/736 (68%), Positives = 598/736 (81%), Gaps = 23/736 (3%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           MDGIRLND ESL+A+GV+KQK+VEEITRAYAHQIYVDGFFNGDPHPGNFLVSK+ PHRPI
Sbjct: 275 MDGIRLNDLESLDAYGVDKQKLVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKESPHRPI 334

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFGLTKKLSS++KQALAKMF A+AEGDHVALLSAFAEMGL+LRLD+PEQAMEV+T+FF
Sbjct: 335 LLDFGLTKKLSSTIKQALAKMFLASAEGDHVALLSAFAEMGLKLRLDIPEQAMEVTTVFF 394

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
           R + PANE  +T+K+L++QR +N+KVIQEKM L++KE+KRFNPVDAFPGDIVIF RVLNL
Sbjct: 395 RATTPANEYHKTMKSLADQRDRNMKVIQEKMNLDKKEMKRFNPVDAFPGDIVIFGRVLNL 454

Query: 181 LRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLRDFLVE 240
           LRGLSSTMNVRIVY+DIMRPFAE VL   I+K PS++  WI+  P+HSDVE+KLR  L+E
Sbjct: 455 LRGLSSTMNVRIVYMDIMRPFAESVLSGYISKGPSLNDRWIFDSPVHSDVESKLRQLLIE 514

Query: 241 LGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL 300
           +GN+ KILGIQVCAYKDGE IIDT+AG+LG+YDPRPVQPDSLFPVFSVTKGITAGM+HWL
Sbjct: 515 MGNNDKILGIQVCAYKDGEAIIDTAAGVLGKYDPRPVQPDSLFPVFSVTKGITAGMIHWL 574

Query: 301 VDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDEC 360
           VDNG+L LEEN+A IWP F+SNGKD+IKVHHVLNHTSGLHN    ++ E+PLL+ DWD C
Sbjct: 575 VDNGQLNLEENVATIWPAFRSNGKDVIKVHHVLNHTSGLHNAMGGIAQEDPLLMLDWDGC 634

Query: 361 LNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
           LNRI  S PETEPG+EQ YHYLSFGWLCGGIIE ASGKKFQEILEE I++PL I+GELY+
Sbjct: 635 LNRICQSIPETEPGKEQFYHYLSFGWLCGGIIEHASGKKFQEILEEAIVRPLHIEGELYV 694

Query: 421 GIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIR 480
           GIPPGVESRLA+LT+DT +L+K+S + NR D  LPS+FQP +I+QLA   P  FN LN+R
Sbjct: 695 GIPPGVESRLAALTVDTAELSKISALANRAD--LPSTFQPQQIAQLATTLPVAFNTLNVR 752

Query: 481 RAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHE----TS 536
           RAIIPAANGH SARALARYYAALADGG +PPPHS  SKP LGSHPHIPK  S +     +
Sbjct: 753 RAIIPAANGHVSARALARYYAALADGGKIPPPHSSASKPVLGSHPHIPKLSSSQKPPIKN 812

Query: 537 KKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTST 596
           +K  G + +  +   + TN+ E    + +D +              R  N E+SS    +
Sbjct: 813 RKCIGRRTQATSPSVSTTNSYEKVSSH-EDFDANE----------GRNTNSESSSGGDDS 861

Query: 597 TDSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIG 656
           +  I N    ++   RK++ NPRI D FLG G+Y +LALP   FGLGFKR++++DGS I 
Sbjct: 862 SSRIGNN--LRTHVARKVYKNPRIIDEFLGTGEYENLALPGESFGLGFKRFSSKDGSSIA 919

Query: 657 FGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSELNLPVPEDYLRFAEVE 716
           FGHSGMGGSTGFCDV N F++AVTLNKMSFG  TG+I+  VCSELN+PVP+D+LRFA VE
Sbjct: 920 FGHSGMGGSTGFCDVTNNFSVAVTLNKMSFGGVTGKIVQLVCSELNIPVPDDFLRFA-VE 978

Query: 717 HDTPQD---LGQPLIN 729
              P +   +G+P+IN
Sbjct: 979 QSGPDEQLSMGRPIIN 994

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	729
UNIPROTKB|Q0C344	379	HNE_1129 "Putative esterase" [	0.279	0.538	0.320	4.1e-24
UNIPROTKB|O53190	394	lipP "Esterase/lipase lipP" [M	0.316	0.586	0.313	4.7e-23
UNIPROTKB|Q48LQ9	382	estC "Carboxylesterase" [Pseud	0.379	0.725	0.270	4.4e-22
UNIPROTKB|Q87XQ7	382	estC "Carboxylesterase" [Pseud	0.379	0.725	0.263	4.8e-21
UNIPROTKB|P71778	429	lipL "Esterase lipL" [Mycobact	0.344	0.585	0.316	1.1e-20
UNIPROTKB|Q4KH73	381	estC "Carboxylesterase" [Pseud	0.366	0.700	0.278	5.7e-20
UNIPROTKB|Q0C3E0	400	HNE_1031 "Putative esterase" [	0.268	0.49	0.315	3.8e-19
WB|WBGene00014164	473	lact-2 [Caenorhabditis elegans	0.304	0.469	0.277	1.4e-18
ASPGD|ASPL0000097348	737	AN12290 [Emericella nidulans (	0.278	0.275	0.300	1.7e-18
UNIPROTKB|Q0BWD6	377	HNE_3536 "Putative esterase" [	0.234	0.453	0.318	2e-17

UNIPROTKB|Q0C344 HNE_1129 "Putative esterase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 285 (105.4 bits), Expect = 4.1e-24, P = 4.1e-24
 Identities = 68/212 (32%), Positives = 108/212 (50%)

Query:   226 IHSDVEAK---LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSL 282
             IH  VEA+   +RD   +   +G   G   C   +G+ I+D   G       RP Q  +L
Sbjct:     6 IHGSVEARFAPVRDAFAQNFTNGGENGAAFCMTLEGKPIVDIWGGYADEEQTRPWQKGTL 65

Query:   283 FPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNV 342
               V+S TK +TA    +L D G LK E+ +A  WPEF + GK  + V H+++H++GL   
Sbjct:    66 VNVYSTTKTMTALTALFLADKGALKFEDPVAKYWPEFAAAGKADVTVAHLMSHSAGLSGW 125

Query:   343 SVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQE 402
                +  E+   + DW++  + +A   P  +PG    YH ++ G+L G +I R +G+    
Sbjct:   126 KEPIVRED---LYDWEKATSLLAAQEPYWKPGSAPGYHAMTQGYLVGEVIRRVAGETVGT 182

Query:   403 ILEEGIIQPLSIDGELYIGIPPGVESRLASLT 434
             +  + I  PL  D   +IG+P   + R+A LT
Sbjct:   183 VFRKEIAGPLGAD--FHIGLPATEDHRVADLT 212

GO:0008152 "metabolic process" evidence=ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=ISS

UNIPROTKB|O53190 lipP "Esterase/lipase lipP" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 284 (105.0 bits), Expect = 4.7e-23, P = 4.7e-23
 Identities = 81/258 (31%), Positives = 122/258 (47%)

Query:   248 LGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK 307
             +G  V  + DG+++++   G       RP Q D+L  V S TK +TA  +H LVD G+L 
Sbjct:    31 VGAAVAVWVDGDLVVNLWGGSADAGGTRPWQHDTLATVLSGTKALTATCVHQLVDRGELD 90

Query:   308 LEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALS 367
             L   +A  WPEF   GK  I +  V++H SG       L  E    + DWD    ++A +
Sbjct:    91 LHAPVARYWPEFGQAGKQAITLAMVMSHRSGAIGPRGRLGWEQ---VADWDFVCEQLAAA 147

Query:   368 APETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVE 427
              P  +PG  Q YH  +FG++ G +  R +G+   + L   I +PL  D  ++IG+ PG +
Sbjct:   148 EPWWQPGAAQGYHMTTFGFILGEVFRRVTGRTVGQYLRTEIAEPLGAD--VHIGLHPGEQ 205

Query:   428 SRLASLTIDTDDLNKV----------SGINNRPDLRLPSS--FQPDKISQLAAITPAVFN 475
              R A L +D   + ++          + +N  P   L  S  F PD   +L +      N
Sbjct:   206 LRCADL-VDKPHIRQLLADVQAPGYPTSLNEHPKAALSVSMGFAPD--DELGS------N 256

Query:   476 MLNIRRAI-IPAANGHCS 492
              L + R I  P  NG  S
Sbjct:   257 DLQLWRQIEFPGTNGQVS 274

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q48LQ9 estC "Carboxylesterase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 275 (101.9 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 77/285 (27%), Positives = 131/285 (45%)

Query:   227 HSDVEAK-LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPV 285
             H +++ + +R+    L +D +  G  +C    G+ +ID  AG   +        D++  +
Sbjct:     6 HYELQFEAVREAFAALFDDPQERGAALCIQVGGQTVIDLWAGTADKDGAEAWHTDTILNL 65

Query:   286 FSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVD 345
             FS TK  T+  +  LV+ GKLKL+E +A +WPEF + GK  I +  +L H +GL  +   
Sbjct:    66 FSCTKTFTSVAVLQLVEEGKLKLDEPVARLWPEFAAAGKASITLRQLLCHQAGLPALREQ 125

Query:   346 LSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILE 405
             L +E    +  WD     +A   P   PGQ   Y  +++GWL G ++ RA G+   E + 
Sbjct:   126 LPAE---ALYQWDTMTAALAAEEPWWTPGQGHGYAAITYGWLVGEVLRRADGRGLGESIA 182

Query:   406 EGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINN-RPDLRLPSSFQPDKIS 464
               I +PL +D   ++G+      R+A +     +    +     +  +R P+S      +
Sbjct:   183 ARISRPLGLD--FHVGLADDQFHRVAHIVRGKGNTGDDAAQRVLQATMREPASITGKAFT 240

Query:   465 QLAAITPAVFNMLNIRRAIIPAANGHCSXXXXXXXXXXXXDGGVV 509
                +I  +  N    RR   PAANGH +            DG ++
Sbjct:   241 NPPSIMTST-NKPEWRRMQQPAANGHGNARSLAGFYNGLLDGSLL 284

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q87XQ7 estC "Carboxylesterase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 264 (98.0 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
 Identities = 75/285 (26%), Positives = 131/285 (45%)

Query:   227 HSDVEAK-LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPV 285
             H +++ + +R+    L +D +  G  +C    G+ ++D  AG   +        D++  +
Sbjct:     6 HYELQFEAVREAFAALFDDPQERGAALCIQVGGQTVVDLWAGTADKDGAEAWHTDTIANL 65

Query:   286 FSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVD 345
             FS TK  T+  +  LV+ GKLKL+E +A +WPEF + GK  I +  +L H +GL  +   
Sbjct:    66 FSCTKTFTSVAVLQLVEEGKLKLDEPVARLWPEFAAAGKGSITLRQLLCHQAGLPALREP 125

Query:   346 LSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILE 405
             L +E    +  W+     +A   P   PGQ   Y  +++GWL G ++ RA G+   E + 
Sbjct:   126 LPAE---ALYQWETMTAALAAEEPWWTPGQGHGYAAITYGWLVGEMLRRADGRGPGESIA 182

Query:   406 EGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINN-RPDLRLPSSFQPDKIS 464
               I +PL +D   ++G+      R+A +     +    +     +  +R P+S      +
Sbjct:   183 ARISRPLGLD--FHVGLADDQFYRVAHIARGKGNAGDAAAQRVLQATMREPASITARAFT 240

Query:   465 QLAAITPAVFNMLNIRRAIIPAANGHCSXXXXXXXXXXXXDGGVV 509
                +I  +  N    RR   PAANGH +            DG ++
Sbjct:   241 NPPSIMTST-NKPEWRRMQQPAANGHGNARSLAGFYNGLLDGSLL 284

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P71778 lipL "Esterase lipL" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 270 (100.1 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 84/265 (31%), Positives = 121/265 (45%)

Query:   249 GIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL 308
             G  +  Y DG+ ++D   G   R    P   DS   VFS TKG+TA ++H L D G +  
Sbjct:    50 GGALAVYLDGQPVVDVWKGWADRAGWVPWSADSAPMVFSATKGMTATVIHRLADRGLIDY 109

Query:   309 EENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSA 368
             E  +A  WP F +NGK  + V  V+ H +GL  +    +++  LL  D      R+A + 
Sbjct:   110 EAPVAEYWPAFGANGKATLTVRDVMRHQAGLSGLRG--ATQQDLL--DHVVMEERLAAAV 165

Query:   369 PETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPG-VE 427
             P    G+   YH L+FGWL  G+    +GK  + +  E + +PL  DG L++G PP    
Sbjct:   166 PGRLLGKSA-YHALTFGWLMSGLARAVTGKDMRLLFREELAEPLDTDG-LHLGRPPADAP 223

Query:   428 SRLASLTIDTD-DLNKVSGINNRPDLRLPSSFQPDKISQL--AAITPAVFNMLNIRRAII 484
             +R+A + +  D   N V     R   RL   F     S     AI  AV     +  A I
Sbjct:   224 TRVAEIIMPQDIAANAVLTCAMR---RLAHRFSGGFRSMYFPGAIA-AVQGEAPLLDAEI 279

Query:   485 PAANGHCSXXXXXXXXXXXXDGGVV 509
             PAANG  +            +GG +
Sbjct:   280 PAANGVATARALARMYGAIANGGEI 304

GO:0004806 "triglyceride lipase activity" evidence=IDA

GO:0046503 "glycerolipid catabolic process" evidence=IDA

UNIPROTKB|Q4KH73 estC "Carboxylesterase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 260 (96.6 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 78/280 (27%), Positives = 127/280 (45%)

Query:   234 LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGIT 293
             +R+    L  D +  G  +C    GE +ID  AG   +        D++  +FS TK  T
Sbjct:    14 VREAFAALFEDSQERGAALCIQVGGETVIDLWAGTADKDGAEAWHSDTIANLFSCTKTFT 73

Query:   294 AGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLL 353
             A     LV  GKLKL+  +A+ WPEF + GK  I +  +L H +GL  V   L ++    
Sbjct:    74 AVTALQLVAEGKLKLDAPVADYWPEFAAAGKAAITLRQLLCHQAGLPAVRELLPAQ---A 130

Query:   354 ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLS 413
             + +W   ++ +A   P   PG+   Y  +++GWL G +I RA G+   E +   + +PL 
Sbjct:   131 LYEWQTMVDALAAEQPWWTPGEGHGYAAITYGWLVGELIRRADGRGPGESIVARVARPLG 190

Query:   414 IDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITP-A 472
             +D   ++G+      R+A +     ++   +    R  L   +  +PD +S  A   P +
Sbjct:   191 LD--FHVGLADEEFYRVAHIARGKGNMGDAAA--QR--LLQVTMREPDAMSTRAFTNPPS 244

Query:   473 VFNMLNI---RRAIIPAANGHCSXXXXXXXXXXXXDGGVV 509
             +    N    RR   PAANGH +            DG ++
Sbjct:   245 ILTSTNKPEWRRMQQPAANGHGNARSLAGFYSGLLDGSLL 284

GO:0004091 "carboxylesterase activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C3E0 HNE_1031 "Putative esterase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 255 (94.8 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 64/203 (31%), Positives = 92/203 (45%)

Query:   232 AKLRD-FLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTK 290
             AK+R+ F       G++ G  VC   DG+V +D   GM       P Q D++  VFS TK
Sbjct:    14 AKVREEFERNFAARGEV-GASVCLSVDGQVAVDLWGGMANPETSDPWQEDTVSIVFSCTK 72

Query:   291 GITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSEN 350
                A   H L+D GKL     + + WPEF   GK+   V  +LNH S L  +   +    
Sbjct:    73 AAVATCAHILIDQGKLNPSALVKDYWPEFAKAGKEKTTVQMMLNHESALPTLRDQVK--- 129

Query:   351 PLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQ 410
             P    DWD  + R+       EPG    YH ++FGW  G ++ R SGK       E + +
Sbjct:   130 PGGFGDWDYMIKRMEDEEAFWEPGTRNGYHMVNFGWTVGELVRRVSGKSLGTFFREEVAE 189

Query:   411 PLSIDGELYIGIPPGVESRLASL 433
                   + +IG+P      +A +
Sbjct:   190 KTG--AKFWIGLPESENVHIAPI 210

GO:0008152 "metabolic process" evidence=ISS

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=ISS

WB|WBGene00014164 lact-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 257 (95.5 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 65/234 (27%), Positives = 116/234 (49%)

Query:   249 GIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL 308
             G  +  Y    VI+D   G   +   R   PD+   VFS TK + A  +  LVD G +  
Sbjct:    91 GASITVYHKDRVIVDLQGGYADKASGRKWTPDTRTVVFSTTKAVGAVCVAMLVDRGHISY 150

Query:   309 EENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSA 368
             ++ ++ IWPEF  NGK+ I +  +++H +GL  + + ++ E+     D+++    IA   
Sbjct:   151 DDKMSKIWPEFAQNGKENITIDWLMSHRAGLAALDMPITIEDAN---DFEKMSEVIASQK 207

Query:   369 PETEPGQEQLYHYLSFGWLCGGIIERAS--GKKFQEILEEGIIQPLSIDGELYIGIPPGV 426
             P  EPG +  YH +++GW+   I+ R+   G+      +E +     ID   +IG+PP  
Sbjct:   208 PNWEPGTKSGYHAITYGWIVDQIVRRSDPKGRSVGRFFKEEVADVHGID--FHIGLPPSE 265

Query:   427 ESRLASLTIDTDDLNKVSGINNRPDLRLPSS-FQ---PDKISQLAAITPAVFNM 476
             E  ++ L++ +  L+ V  I + P + +  + F    P+ I++  A  P  F +
Sbjct:   266 EHTVSRLSMPST-LHLVREIVHDPRVLIVLAVFNLRPPNSIARKIAANPTWFKL 318

GO:0016021 "integral to membrane" evidence=IEA

ASPGD|ASPL0000097348 AN12290 [Emericella nidulans (taxid:162425)]

 Score = 257 (95.5 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 64/213 (30%), Positives = 108/213 (50%)

Query:   225 PIHSDVEAK---LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDS 281
             P H   +A    LRD   +L ++   LG  +C   DG  ++D   G       +  + D+
Sbjct:     3 PAHGHCDAAFQPLRDLFDQLLSNESELGASICVNIDGRNVVDLWGGYSNEERTKAWEQDT 62

Query:   282 LFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHN 341
             +  ++S TK ITA   + L++ G L   + ++  WPEF +NGK+ + V HVL+H+SGL +
Sbjct:    63 ITTIWSTTKVITALAANILIERGLLDPSKKVSTYWPEFAANGKENVLVSHVLSHSSGLPS 122

Query:   342 VSVDLSSENPLL-ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKF 400
                   S N +  I + ++   +IA  AP   PG++  YH ++ G L G ++ R +G+  
Sbjct:   123 ----WESPNTIKDIYNAEKAAEKIAAQAPWWTPGEQLGYHLVTQGCLVGELVRRTTGQSL 178

Query:   401 QEILEEGIIQPLSIDGELYIGIPPGVESRLASL 433
              + + + I +PL  D  L  G+P     R A +
Sbjct:   179 AQFIADEITEPLGADYRL--GVPEPEWPRTADI 209

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0BWD6 HNE_3536 "Putative esterase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 239 (89.2 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 56/176 (31%), Positives = 91/176 (51%)

Query:   258 GEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWP 317
             GE ++D   G   R   R    D++ P++S +KGI+A +L   V+      E  +A++WP
Sbjct:    43 GETLVDLRGGWADRAKERVWAEDTVVPIYSASKGISALVLAMAVEALPAGYETPVADVWP 102

Query:   318 EFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQ 377
             EF + GK  + +  +++H +GL     ++   +P L  D   C   IA  AP   PG   
Sbjct:   103 EFAAEGKGEVTIGQMVSHQAGLPGFEKEI---DPALWLDPPACAAAIAALAPMWPPGSAH 159

Query:   378 LYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASL 433
              YH L++G+L G ++ R +G+    IL+E I  P  ID +  IG+P   E R+  +
Sbjct:   160 GYHPLTWGYLVGEVVNRITGRTVGAILKEDICGPAGIDFQ--IGLPEKDEPRVGDM 213

GO:0008150 "biological_process" evidence=ND

GO:0016788 "hydrolase activity, acting on ester bonds" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	729
pfam00144	326	pfam00144, Beta-lactamase, Beta-lactamase	2e-38
COG1680	390	COG1680, AmpC, Beta-lactamase class C and other pe	6e-26
COG0661	517	COG0661, AarF, Predicted unusual protein kinase [G	6e-23
TIGR01982	437	TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase	4e-16
PRK04750	537	PRK04750, ubiB, putative ubiquinone biosynthesis p	8e-14
PRK03642	432	PRK03642, PRK03642, putative periplasmic esterase;	2e-08
PRK11289	384	PRK11289, ampC, beta-lactamase/D-alanine carboxype	9e-08
PRK10662	378	PRK10662, PRK10662, beta-lactam binding protein Am	2e-05
PRK13128	518	PRK13128, PRK13128, D-aminopeptidase; Reviewed	2e-04

>gnl|CDD|215746 pfam00144, Beta-lactamase, Beta-lactamase

 Score =  145 bits (367), Expect = 2e-38
 Identities = 78/293 (26%), Positives = 120/293 (40%), Gaps = 40/293 (13%)

Query: 234 LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGIT 293
           L   + EL   G I G+ V   +DG+V++D   G+      RPV  D+LF + SVTK  T
Sbjct: 1   LDRLIRELMAQGGIPGVAVAVTRDGKVVVDR-GGVADLEGGRPVTADTLFRIASVTKTFT 59

Query: 294 AGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGL-HNVSVDLSSENPL 352
           A  +  LV+ GKL L++ ++   PEF   GK  I +  +L HTSGL    + D   E   
Sbjct: 60  AAAVLQLVERGKLDLDDPVSKYLPEFAGPGKGGITLRDLLTHTSGLPPLFAPDDLEEAA- 118

Query: 353 LICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPL 412
              D  E +  +A   P   PG    Y   ++G L G ++ER +G+ ++E+L + I++PL
Sbjct: 119 --ADLAELVRALAALPPVWPPGTRWGYSNTAYGLL-GELLERVTGQSYEELLGDRILRPL 175

Query: 413 SIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPA 472
            +  E  +G+P   + R A+         +VS                            
Sbjct: 176 GMT-ETELGVPEPGDPRDAAGYTGEGPPVRVSPGPLPAG--------------------- 213

Query: 473 VFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHP 525
                         A    +AR LAR+   L  G ++           L    
Sbjct: 214 ------------AYAGLKSTARDLARFLLLLLGGLLLSAATLAQLTDWLRGGT 254

This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. Length = 326

>gnl|CDD|224594 COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]

 Score =  110 bits (276), Expect = 6e-26
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 7/194 (3%)

Query: 225 PIHSDVEAKLRDFLVELGNDGKI--LGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSL 282
            +     A+L      +  +      G+ +    DG+ ++    G+       PV P ++
Sbjct: 29  EVAGFDAARLDRLADAIMEEYGAPGPGLALAVVLDGKTVVAKGYGVADEGYGGPVTPPTV 88

Query: 283 FPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSN--GKDLIKVHHVLNHTSGLH 340
           F + SVTK  TA +L  LV+ GKL L++ ++   PE K    G   I +  +L HTSGL 
Sbjct: 89  FRIASVTKSFTATLLGKLVEEGKLDLDDPVSKYLPEGKDPATGGAPITLRDLLTHTSGLP 148

Query: 341 NVSVDLSSENPLLICDWDECLNRIALSAPET--EPGQEQLYHYLSFGWLCGGIIERASGK 398
                  +    L+ D +  L  +A   PE    PG    Y   ++G L G I+ER +GK
Sbjct: 149 FPEDYAYAVPKRLVQDQEAALEYLASLPPELAPPPGTAFAYSNSNYGLL-GAILERVTGK 207

Query: 399 KFQEILEEGIIQPL 412
             +E+L E I +PL
Sbjct: 208 PLEELLRERIFEPL 221

Length = 390

>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function prediction only]

 Score =  102 bits (257), Expect = 6e-23
 Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 18/203 (8%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           +DGI+++D  +L++ G++++++ E + RA+  Q+  DGFF+ DPHPGN LV  D   R +
Sbjct: 248 IDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSDG--RIV 305

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFF 120
           LLDFG+  +L    ++ LA++  A    D+  +     E+G      VP       T   
Sbjct: 306 LLDFGIVGRLDPKFRRYLAELLLAFLNRDYDRVAELHVELGY-----VPPD-----TDRD 355

Query: 121 RTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNL 180
             +A      E +        + +   +   KL +  V R  P+   P ++V+  R L L
Sbjct: 356 PLAAAIRAVLEPIYGKP---LEEISFGEILDKLFE--VARRFPMR-LPPELVLLQRTLLL 409

Query: 181 LRGLSSTMNVRIVYLDIMRPFAE 203
           + G+   ++ R     + +P   
Sbjct: 410 VEGVGRQLDPRFNLWAVAQPLLA 432

Length = 517

>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase

 Score = 81.2 bits (201), Expect = 4e-16
 Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 4/94 (4%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           +DGI L+D  +L+  G++++ + E + R++ +Q+  DGFF+ D HPGN  V KD   + I
Sbjct: 240 IDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKDG--KII 297

Query: 61  LLDFGLTKKLSSSMKQALAKMFFAAAEGD--HVA 92
            LDFG+  +LS   ++ LA++ +     D   VA
Sbjct: 298 ALDFGIVGRLSEEDRRYLAEILYGFLNRDYRRVA 331

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 437

>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed

 Score = 74.2 bits (183), Expect = 8e-14
 Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP- 59
           M GI ++D  +L A G + + + E     +  Q++ DGFF+ D HPGN  VS DPP  P 
Sbjct: 243 MYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMHPGNIFVSYDPPENPR 302

Query: 60  -ILLDFGLTKKLSSSMKQALAKMFFA 84
            I LDFG+   L+   K+ LA+ F A
Sbjct: 303 YIALDFGIVGSLNKEDKRYLAENFLA 328

Length = 537

>gnl|CDD|179620 PRK03642, PRK03642, putative periplasmic esterase; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 31/212 (14%)

Query: 232 AKLR--DFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYD-------PRPVQPDSL 282
            KL   D  +    D    G+ +   KD +++   + G   +YD       P     +++
Sbjct: 38  EKLNQMDRWISQQIDAGYPGVNLLIIKDNQIVYRKAWGYAKKYDGSTLLAHPVKATTNTM 97

Query: 283 FPVFSVTKGITAGM-LHWLVDNGKLKLEENIANIWPEFKS------NGKDLIKVHHVLNH 335
           + + S TK       L  LV  GKL + + I+   P FK        GK+ +++  +L+H
Sbjct: 98  YDLASNTKMYATNFALQKLVSEGKLDVNDLISKYIPGFKDSPGDKIKGKNTLRIIDLLHH 157

Query: 336 TSGL--------HNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWL 387
           ++G           V+  L S+      D    L  I  +  E +PG + +Y  + +  L
Sbjct: 158 SAGFPADPQYPNKAVAGALYSQ------DKSTTLEMIKKTPLEYQPGSKHIYSDVDY-ML 210

Query: 388 CGGIIERASGKKFQEILEEGIIQPLSIDGELY 419
            G I+E  +G+     +EE I +PL +   ++
Sbjct: 211 LGFIVESITGQPLDRYVEESIYRPLGLTHTVF 242

Length = 432

>gnl|CDD|236894 PRK11289, ampC, beta-lactamase/D-alanine carboxypeptidase; Provisional

 Score = 54.5 bits (132), Expect = 9e-08
 Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV  D+LF + SV+K  TA +  +    G+L L +  +   PE K +  D I + H+  
Sbjct: 75  QPVTQDTLFELGSVSKTFTATLAGYAQARGELSLSDPASKYLPELKGSPFDGITLLHLAT 134

Query: 335 HTSGLHNVSVDLSSENPLLICDW----DECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G       L    PL + D      + L       P   PG ++LY   S G L G 
Sbjct: 135 YTAG------GL----PLQVPDEVKDDAQLLRYFQAWQPAYAPGTQRLYSNPSIG-LFGY 183

Query: 391 IIERASGKKFQEILEEGIIQPL 412
           +  +A G+ F++++E+ +  PL
Sbjct: 184 LAAKAMGQPFEQLMEQRLFPPL 205

Length = 384

>gnl|CDD|236732 PRK10662, PRK10662, beta-lactam binding protein AmpH; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%)

Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWP---EFKSNGKDLIKVHH 331
           RP Q DSL  + S+TK +T+ +L  L D+G +KL + ++   P      +     I + +
Sbjct: 76  RP-QLDSLIRIASITKLMTSEVLVKLADDGTVKLTDPLSKYAPPGARVPTYNGQPITLLN 134

Query: 332 VLNHTSGLHNVSVDLSSENPLLICDWDECLNR---IALSAPETEPGQEQLYHYLSFGWLC 388
           +  HTS L       ++  P+ +  W     R   ++ +  +  PG +  Y  L+F  L 
Sbjct: 135 LATHTSALPREQPGGAAHRPVFV--WPTREQRWKWLSTAKLKAAPGTQAAYSNLAFD-LL 191

Query: 389 GGIIERASGKKFQEILEEGIIQPL 412
              + +A+GK + ++L E I +PL
Sbjct: 192 ADALAKAAGKPYTQLLREKITRPL 215

Length = 378

>gnl|CDD|171868 PRK13128, PRK13128, D-aminopeptidase; Reviewed

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 24/218 (11%)

Query: 232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 291
             L  F+  +  + K  G  V   KDGEV++  + G       + + P++  P+ SV+K 
Sbjct: 7   PTLEAFVHAIPQNYKGPGGAVAVVKDGEVVLRHAWGFADLARRKAMTPETRMPICSVSKQ 66

Query: 292 ITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHN---VSVDLSS 348
            T  +L   +   ++ L+  +A    +F+        V  + N+ SGL +   ++V L  
Sbjct: 67  FTCAVLLDCIGEPEM-LDAALAAYLDQFE---DPRPAVRDLCNNQSGLRDYWALTV-LCG 121

Query: 349 ENPLLICDWDECLNRIA-LSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEG 407
             P  I   D+  N +  L      PG    Y   +F  +   +IE+ +G+   ++L E 
Sbjct: 122 AAPEGIFLPDQAQNLLRRLKTTHFAPGTHYSYCNGNFR-ILADLIEQHTGRSLADLLAER 180

Query: 408 IIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSG 445
           I  P  +              + A L  DT   ++ +G
Sbjct: 181 IFAPAGM--------------KTAELIPDTALFDECTG 204

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	729
PRK11289	384	ampC beta-lactamase/D-alanine carboxypeptidase; Pr	100.0
PRK10662	378	beta-lactam binding protein AmpH; Provisional	100.0
PRK03642	432	putative periplasmic esterase; Provisional	100.0
PRK13128	518	D-aminopeptidase; Reviewed	100.0
PF00144	329	Beta-lactamase: Beta-lactamase; InterPro: IPR00146	100.0
COG1680	390	AmpC Beta-lactamase class C and other penicillin b	100.0
COG0661	517	AarF Predicted unusual protein kinase [General fun	99.97
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.96
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.93
KOG1235	538	consensus Predicted unusual protein kinase [Genera	99.91
KOG1234	363	consensus ABC (ATP binding cassette) 1 protein [Ge	99.7
KOG1236	565	consensus Predicted unusual protein kinase [Genera	99.67
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.94
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	98.62
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	98.44
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.4
smart00090	237	RIO RIO-like kinase.	98.26
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.17
PRK15442	284	beta-lactamase TEM; Provisional	98.13
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	98.03
COG1686	389	DacC D-alanyl-D-alanine carboxypeptidase [Cell env	97.96
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	97.87
PF00768	240	Peptidase_S11: D-alanyl-D-alanine carboxypeptidase	97.86
PRK10001	400	D-alanyl-D-alanine carboxypeptidase fraction C; Pr	97.83
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	97.66
PRK14879	211	serine/threonine protein kinase; Provisional	97.66
PRK10793	403	D-alanyl-D-alanine carboxypeptidase fraction A; Pr	97.6
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.6
PRK12274	218	serine/threonine protein kinase; Provisional	97.53
PRK11397	388	dacD D-alanyl-D-alanine carboxypeptidase; Provisio	97.46
PRK11669	306	pbpG D-alanyl-D-alanine endopeptidase; Provisional	97.41
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	97.32
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.04
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	96.79
PRK09605	535	bifunctional UGMP family protein/serine/threonine	96.76
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	96.69
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	96.66
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	96.59
COG0478	304	RIO-like serine/threonine protein kinase fused to	96.55
PF01636	239	APH: Phosphotransferase enzyme family This family	96.51
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	96.33
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	96.31
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	96.26
KOG0661	538	consensus MAPK related serine/threonine protein ki	96.25
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	96.25
KOG0596	677	consensus Dual specificity; serine/threonine and t	96.23
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.23
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	96.18
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	96.15
PRK09188	365	serine/threonine protein kinase; Provisional	96.05
PRK10271	188	thiK thiamine kinase; Provisional	95.89
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	95.87
PRK11768	325	serine/threonine protein kinase; Provisional	95.86
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	95.76
PHA02882	294	putative serine/threonine kinase; Provisional	95.74
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	95.72
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	95.68
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	95.68
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	95.63
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	95.63
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	95.51
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	95.48
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	95.45
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	95.41
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	95.41
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	95.4
PRK05231	319	homoserine kinase; Provisional	95.36
PRK10345	210	hypothetical protein; Provisional	95.31
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	95.29
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	95.29
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	95.27
COG2334	331	Putative homoserine kinase type II (protein kinase	95.24
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	95.22
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	95.12
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	95.11
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	95.1
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	95.05
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	95.03
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	95.02
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	95.01
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	95.01
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	95.01
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	94.99
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	94.98
PHA03207	392	serine/threonine kinase US3; Provisional	94.97
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	94.92
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	94.9
KOG0605	550	consensus NDR and related serine/threonine kinases	94.89
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	94.88
PHA03212	391	serine/threonine kinase US3; Provisional	94.88
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	94.88
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	94.88
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	94.88
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	94.79
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	94.79
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	94.78
PLN00034	353	mitogen-activated protein kinase kinase; Provision	94.78
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	94.76
PHA03210	501	serine/threonine kinase US3; Provisional	94.76
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	94.75
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	94.74
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	94.74
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	94.73
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	94.73
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	94.72
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	94.72
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	94.71
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	94.71
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	94.71
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	94.71
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	94.69
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	94.68
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	94.68
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	94.66
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	94.65
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	94.65
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	94.64
PTZ00263	329	protein kinase A catalytic subunit; Provisional	94.63
PRK12396	409	5-methylribose kinase; Reviewed	94.63
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	94.63
KOG1167	418	consensus Serine/threonine protein kinase of the C	94.62
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	94.62
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	94.59
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	94.58
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	94.57
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	94.57
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	94.55
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	94.47
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	94.45
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	94.44
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	94.41
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	94.39
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	94.37
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	94.37
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	94.36
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	94.35
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	94.35
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	94.35
PTZ00267	478	NIMA-related protein kinase; Provisional	94.34
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	94.34
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	94.34
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	94.33
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	94.32
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	94.32
KOG0198	313	consensus MEKK and related serine/threonine protei	94.31
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	94.29
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	94.29
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	94.26
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	94.25
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	94.25
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	94.23
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	94.22
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	94.21
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	94.21
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	94.19
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	94.18
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	94.18
PF13354	197	Beta-lactamase2: Beta-lactamase enzyme family; PDB	94.18
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	94.17
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	94.15
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	94.15
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	94.15
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	94.14
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	94.13
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	94.13
KOG0598	357	consensus Ribosomal protein S6 kinase and related	94.12
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	94.12
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	94.12
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	94.1
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	94.1
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	94.07
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	94.06
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	94.06
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	94.05
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	94.05
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	94.04
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	93.99
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	93.99
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	93.98
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	93.98
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	93.96
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	93.96
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	93.95
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	93.94
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	93.93
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	93.93
PHA03211	461	serine/threonine kinase US3; Provisional	93.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	93.91
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	93.9
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	93.9
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	93.89
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	93.89
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	93.89
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	93.88
PRK06148	1013	hypothetical protein; Provisional	93.85
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	93.85
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	93.84
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	93.83
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	93.82
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	93.82
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	93.81
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	93.79
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	93.79
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	93.78
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	93.77
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	93.76
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	93.76
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	93.75
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	93.72
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	93.72
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	93.7
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	93.69
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	93.68
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	93.68
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	93.67
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	93.67
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	93.67
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	93.65
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	93.59
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	93.56
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	93.54
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	93.54
PTZ00036	440	glycogen synthase kinase; Provisional	93.53
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	93.53
PRK06149	972	hypothetical protein; Provisional	93.53
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	93.52
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	93.51
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	93.5
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	93.49
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	93.49
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	93.48
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	93.48
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	93.46
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	93.45
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	93.44
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	93.43
PHA03209	357	serine/threonine kinase US3; Provisional	93.42
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	93.37
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	93.35
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	93.35
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	93.34
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	93.34
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	93.33
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	93.31
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	93.27
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	93.27
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	93.26
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	93.24
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	93.23
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	93.23
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	93.22
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	93.21
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	93.18
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	93.18
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	93.15
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	93.15
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	93.13
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	93.13
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	93.12
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	93.1
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	93.06
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	93.06
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	93.05
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	93.05
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	93.03
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	93.03
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	93.03
PRK10593	297	hypothetical protein; Provisional	93.01
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	93.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	92.99
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	92.98
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	92.97
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	92.97
PLN03224	507	probable serine/threonine protein kinase; Provisio	92.97
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	92.95
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	92.93
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	92.93
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	92.92
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	92.9
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	92.88
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	92.85
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	92.85
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	92.84
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	92.8
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	92.77
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	92.75
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	92.75
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	92.74
PTZ00283	496	serine/threonine protein kinase; Provisional	92.72
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	92.71
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	92.7
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	92.69
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	92.68
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	92.68
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	92.67
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	92.66
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	92.62
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	92.62
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	92.62
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	92.61
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	92.55
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	92.53
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	92.53
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	92.47
PLN00009	294	cyclin-dependent kinase A; Provisional	92.47
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	92.46
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.44
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	92.43
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	92.43
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	92.42
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	92.41
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	92.41
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	92.4
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	92.39
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	92.39
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	92.36
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	92.36
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	92.34
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	92.32
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	92.29
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	92.27
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	92.27
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	92.26
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	92.25
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	92.21
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	92.21
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	92.19
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	92.14
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	92.11
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	92.09
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	92.07
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	92.07
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	92.05
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	92.04
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	92.03
PTZ00024	335	cyclin-dependent protein kinase; Provisional	92.02
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	92.01
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	91.99
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	91.95
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	91.94
PRK09550	401	mtnK methylthioribose kinase; Reviewed	91.92
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	91.91
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	91.88
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	91.87
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	91.86
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	91.83
KOG0583	370	consensus Serine/threonine protein kinase [Signal	91.78
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	91.76
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	91.75
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	91.74
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	91.72
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	91.67
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	91.64
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	91.61
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	91.6
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	91.59
KOG0581	364	consensus Mitogen-activated protein kinase kinase	91.56
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	91.55
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	91.53
KOG2268	465	consensus Serine/threonine protein kinase [Signal	91.5
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	91.48
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	91.44
PLN02236	344	choline kinase	91.38
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	91.38
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	91.36
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	91.33
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	91.22
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	91.18
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	91.17
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	91.15
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	91.03
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	91.0
PLN02756	418	S-methyl-5-thioribose kinase	90.98
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	90.95
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	90.72
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	90.59
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	90.57
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	90.57
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	90.55
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	90.54
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	90.46
TIGR03843	253	conserved hypothetical protein. This model represe	90.39
KOG3087	229	consensus Serine/threonine protein kinase [General	90.38
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	90.36
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	90.28
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	90.21
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	90.2
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	90.12
KOG1027	903	consensus Serine/threonine protein kinase and endo	90.08
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	90.04
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	90.01
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	89.85
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	89.85
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	89.83
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	89.77
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	89.7
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	89.69
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	89.68
KOG0582	516	consensus Ste20-like serine/threonine protein kina	89.62
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	89.6
KOG0578	550	consensus p21-activated serine/threonine protein k	89.59
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	89.56
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	89.53
PTZ00284	467	protein kinase; Provisional	89.11
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	89.05
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	88.67
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	88.22
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	88.16
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	87.88
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	87.85
PLN00181	793	protein SPA1-RELATED; Provisional	87.68
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	87.54
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	87.42
TIGR03423	592	pbp2_mrdA penicillin-binding protein 2. Members of	87.28
smart00146	202	PI3Kc Phosphoinositide 3-kinase, catalytic domain.	86.87
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	86.21
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	85.95
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	85.56
cd05172	235	PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK)	85.44
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	85.42
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	85.24
PRK10795	634	penicillin-binding protein 2; Provisional	85.23
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	85.17
cd00892	237	PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela	84.77
cd05171	279	PIKKc_ATM Ataxia telangiectasia mutated (ATM), cat	84.51
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	84.46
cd00142	219	PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like f	84.28
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	84.24
COG3178	351	Predicted phosphotransferase related to Ser/Thr pr	84.15
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	84.13
PHA02988	283	hypothetical protein; Provisional	83.76
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	83.75
PLN02876	822	acyl-CoA dehydrogenase	83.62
cd00893	289	PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I	83.52
PF00454	235	PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina	83.47
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	83.45
cd05168	293	PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T	83.3
cd05169	280	PIKKc_TOR TOR (Target of rapamycin), catalytic dom	83.29
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	83.25
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	82.9
cd00891	352	PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic	82.81
PRK09902	216	hypothetical protein; Provisional	82.37
KOG0575	592	consensus Polo-like serine/threonine protein kinas	82.16
cd05164	222	PIKKc Phosphoinositide 3-kinase-related protein ki	81.82
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	81.77
cd05170	307	PIKKc_SMG1 Suppressor of morphogenetic effect on g	81.26
cd05167	311	PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K),	81.15
cd00896	350	PI3Kc_III Phosphoinositide 3-kinase (PI3K), class	81.12
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	81.08
TIGR02214	636	spoVD_pbp stage V sporulation protein D. This mode	80.83
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	80.76

>PRK11289 ampC beta-lactamase/D-alanine carboxypeptidase; Provisional

Probab=100.00  E-value=4.2e-49  Score=430.08  Aligned_cols=242  Identities=22%  Similarity=0.300  Sum_probs=202.4

Q ss_pred             chHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          227 HSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      ..++.+.+++.+++++++..+||++++|+++|++++. +||+++.+.+.|++++|+|+|||+||+||++++++|+|+|+|
T Consensus        28 ~~~~~~~vd~~i~~~~~~~~~pG~~vaV~~~g~~~~~-~~G~~~~~~~~p~~~dT~f~iaSvTK~fTa~~i~~Lve~G~L  106 (384)
T PRK11289         28 PQQLKDIVDRTITPLMEEQDIPGMAVAVIYNGKPYYF-NYGVADKATGQPVTQDTLFELGSVSKTFTATLAGYAQARGEL  106 (384)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCEEEEE-eeeecccccCCCCCCCCEEeeeechHHHHHHHHHHHHHCCCC
Confidence            4678889999999999999999999999999998875 899999999999999999999999999999999999999999


Q ss_pred             CccCchhhhccCCccCCCCCCcHHHHhcCCCC-CCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHH
Q 004807          307 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSG-LHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG  385 (729)
Q Consensus       307 ~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSG-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~  385 (729)
                      +|||||.+|||+|+...+++|||||||+|||| ++...++       ...+.+++++.+...++.++||++|.|||.+|.
T Consensus       107 ~Lddpv~~ylP~~~~~~~~~ITir~LLtHtSGg~p~~~~~-------~~~~~~~l~~~l~~~~~~~~PG~~~~YSn~~y~  179 (384)
T PRK11289        107 SLSDPASKYLPELKGSPFDGITLLHLATYTAGGLPLQVPD-------EVKDDAQLLRYFQAWQPAYAPGTQRLYSNPSIG  179 (384)
T ss_pred             CCCCcHHHhCcccCCCCcCCeEHHHHhccccCCCcccCCc-------ccCCHHHHHHHHHhCCCCCCCCCCeeechHHHH
Confidence            99999999999998766789999999999995 7753321       135678888988888999999999999999998


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhh
Q 004807          386 WLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQ  465 (729)
Q Consensus       386 ~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  465 (729)
                       |||.|||+++|++|++|++++||+||||++|.+. .++....+.+..|.....  ...         .           
T Consensus       180 -lLg~iiE~vtg~~~~~~l~~~I~~PLGM~~T~~~-~~~~~~~~~a~gy~~~g~--~~~---------~-----------  235 (384)
T PRK11289        180 -LFGYLAAKAMGQPFEQLMEQRLFPPLGLTHTYIN-VPEAEMADYAQGYNKEGK--PVR---------V-----------  235 (384)
T ss_pred             -HHHHHHHHHHCcCHHHHHHHhhhhhcCCCccccC-CCccccccceeeeccCCC--cee---------c-----------
Confidence             9999999999999999999999999999999663 444444555555422110  000         0           


Q ss_pred             hhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          466 LAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                .+.+  ...|+||++||++||+||++++++++.+++.
T Consensus       236 ----------~~~~--~~~~aGgl~ST~~Dl~~f~~all~~~~l~~~  270 (384)
T PRK11289        236 ----------NPGV--LDAEAYGVKSTAADMLRFVQANLGPQDLDPT  270 (384)
T ss_pred             ----------CCCc--ccCCceeeEECHHHHHHHHHHHcCCCCCCHH
Confidence                      0000  0137999999999999999999998876443

>PRK10662 beta-lactam binding protein AmpH; Provisional

Probab=100.00  E-value=9.6e-49  Score=427.56  Aligned_cols=250  Identities=18%  Similarity=0.240  Sum_probs=201.3

Q ss_pred             CCCCchHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHH
Q 004807          223 SKPIHSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVD  302 (729)
Q Consensus       223 ~~p~~~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve  302 (729)
                      ..|....+.+.+++.+++++++.++||++|+|+++|++++ .+||+++.+.+.|++++|+|+|||+||+|||+++++|+|
T Consensus        24 ~~~~~~~~~~~id~~~~~~~~~~~~pG~~v~V~~~g~i~~-~~~G~~~~~~~~~~t~dT~f~iaSiTK~fta~ai~~Lve  102 (378)
T PRK10662         24 PAADPLLASDIVDRYAEHIFYGSGATGMALVVIDGNQRVF-RSYGETRPGNNVRPQLDSLIRIASITKLMTSEVLVKLAD  102 (378)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEECCEEEE-EeeeeccCCCCCCCCCCCeEEeeeecHHHHHHHHHHHHH
Confidence            3455678899999999999999999999999999999888 689999999999999999999999999999999999999


Q ss_pred             CCCCCccCchhhhccCCcc---CCCCCCcHHHHhcCCCCCCCCccCcccCCCcC-CCCHHHHHHHHHhcCCCCCCCCcee
Q 004807          303 NGKLKLEENIANIWPEFKS---NGKDLIKVHHVLNHTSGLHNVSVDLSSENPLL-ICDWDECLNRIALSAPETEPGQEQL  378 (729)
Q Consensus       303 ~G~l~ldd~v~~ylP~~~~---~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~PG~~~~  378 (729)
                      +|+|+|||||.+|+|++..   ...+.|||||||+||||++++........+.. ..+.++.++.+...++.++||++|.
T Consensus       103 ~G~l~lddpv~~ylP~~~~~~~~~~~~ITir~LLsHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PGt~~~  182 (378)
T PRK10662        103 DGTVKLTDPLSKYAPPGARVPTYNGQPITLLNLATHTSALPREQPGGAAHRPVFVWPTREQRWKWLSTAKLKAAPGTQAA  182 (378)
T ss_pred             CCCCCCCCcHHHhCcccccCCCCCCCCccHHHHhhCcCCCCCCCCCccccCCcccCCCHHHHHHHHhcCCCcCCCCCcee
Confidence            9999999999999998532   12378999999999999997543211111111 1256778888888899999999999


Q ss_pred             cccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCC
Q 004807          379 YHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSF  458 (729)
Q Consensus       379 Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~  458 (729)
                      |||.+|. |||.|||+++|++|++|++++||+||||++|.|...+ ....+.+..|.  .           +.   +.  
T Consensus       183 Ysn~~~~-lLg~iie~vtg~~~~~~l~~~I~~PLGM~~T~~~~~~-~~~~~~a~g~~--~-----------~~---~~--  242 (378)
T PRK10662        183 YSNLAFD-LLADALAKAAGKPYTQLLREKITRPLGMKDTTFTPSP-DQCARLMVGEK--G-----------AS---PC--  242 (378)
T ss_pred             ecchhHH-HHHHHHHHHhCCCHHHHHHHhCccccCCCCCcCCCCh-hhhhhcccccC--C-----------CC---CC--
Confidence            9999999 9999999999999999999999999999999774322 22223332220  0           00   00  


Q ss_pred             CcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          459 QPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                         .......|+||++||++||+||+++++++|.+...
T Consensus       243 -------------------~~~~~~~~aGGl~sT~~Dmak~~~~ll~~g~~~~~  277 (378)
T PRK10662        243 -------------------NNTLAAIGSGGVYSTPGDMMRWMQQFLSSDNYQRS  277 (378)
T ss_pred             -------------------ccccccCCCCccccCHHHHHHHHHHHhCCCCCCcc
Confidence                               00011248999999999999999999998876543

>PRK03642 putative periplasmic esterase; Provisional

Probab=100.00  E-value=7.2e-48  Score=427.90  Aligned_cols=270  Identities=19%  Similarity=0.328  Sum_probs=194.6

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCC-------CCCCCCCCCccccccchHHHHH-HHHHH
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRY-------DPRPVQPDSLFPVFSVTKGITA-GMLHW  299 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~-------~~~p~~~~t~f~i~SitK~~ta-~~v~~  299 (729)
                      .+..+++++.+++.+++ ++||++++|+++|+++++++||+++..       .+.|+++||+|+|+|+||+||+ +++++
T Consensus        37 ~~~~~~ld~~i~~~~~~-~~pG~sv~V~~~g~iv~~~~~G~~~~~~g~~~~~~~~~~t~dT~f~iaSiTK~ftt~~ai~~  115 (432)
T PRK03642         37 SEKLNQMDRWISQQIDA-GYPGVNLLIIKDNQIVYRKAWGYAKKYDGSTLLAHPVKATTNTMYDLASNTKMYATNFALQK  115 (432)
T ss_pred             HHHHHHHHHHHHHHHhc-CCCeEEEEEEECCEEEEEeeeeeccccccccccccCCCCCCCCEEechhhhHHHHHHHHHHH
Confidence            44567888888888874 699999999999999999999998853       4578999999999999999974 88899


Q ss_pred             HHHCCCCCccCchhhhccCCccC------CCCCCcHHHHhcCCCCCCCCccCccc--CCCcCCCCHHHHHHHHHhcCCCC
Q 004807          300 LVDNGKLKLEENIANIWPEFKSN------GKDLIKVHHVLNHTSGLHNVSVDLSS--ENPLLICDWDECLNRIALSAPET  371 (729)
Q Consensus       300 lve~G~l~ldd~v~~ylP~~~~~------~~~~iTir~LLtHtSGl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~  371 (729)
                      |+|+|+|+|||||.+|||+|...      +++.|||||||+||||++........  .......+.+++++.+...++.+
T Consensus       116 Lve~G~l~ldd~v~~ylP~~~~~~~~~~~~~~~ITir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  195 (432)
T PRK03642        116 LVSEGKLDVNDLISKYIPGFKDSPGDKIKGKNTLRIIDLLHHSAGFPADPQYPNKAVAGALYSQDKSTTLEMIKKTPLEY  195 (432)
T ss_pred             HHHCCCCCCcCcHHHhcccccccccccccCCCCCcHHHHhhCccCCCCCcccccccccccccccCHHHHHHHHhhCCCcC
Confidence            99999999999999999999753      24689999999999999874321111  11111235677888888889999


Q ss_pred             CCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCC-ccccccceeccCcccccccccCCCC
Q 004807          372 EPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPG-VESRLASLTIDTDDLNKVSGINNRP  450 (729)
Q Consensus       372 ~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~  450 (729)
                      +||++|.|||.+|. |||.|||+++|++|++|++++||+||||++|+|...... ...+.+.........   ......|
T Consensus       196 ~PG~~~~Ysn~~~~-lLg~iie~vtG~~~~~~~~e~If~PLgM~~t~~~~~~~~~~~~~~a~~~~~g~~~---~~~~~~p  271 (432)
T PRK03642        196 QPGSKHIYSDVDYM-LLGFIVESITGQPLDRYVEESIYRPLGLTHTVFNPLQKGFKPQQIAATELNGNTR---DGVIHFP  271 (432)
T ss_pred             CCCCceEecchHHH-HHHHHHHHHhCCCHHHHHHHhhhcccCCCcCcccCccccccHhhcCcccccCccc---ccccccc
Confidence            99999999999998 999999999999999999999999999999977422110 111111111000000   0000000


Q ss_pred             CCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          451 DLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       451 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                      .......+     .    .... ...........|+||++||++||+||+++++++|.+.++
T Consensus       272 ~~~~~~~~-----~----~~~d-~~~~~~~g~~~g~gGl~sTa~Dlakf~~~lL~~G~~~g~  323 (432)
T PRK03642        272 NIRTNTLW-----G----QVHD-EKAFYSMGGVSGHAGLFSNTGDMAVLMQVMLNGGGYGNV  323 (432)
T ss_pred             ccccCcee-----e----eecC-cchhhhcCCcccccccccCHHHHHHHHHHHHhcCCcCCc
Confidence            00000000     0    0000 000001123357899999999999999999999998776

>PRK13128 D-aminopeptidase; Reviewed

Probab=100.00  E-value=1.9e-46  Score=420.20  Aligned_cols=238  Identities=20%  Similarity=0.227  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccC
Q 004807          231 EAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEE  310 (729)
Q Consensus       231 ~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd  310 (729)
                      .+.+++++++++++..+||++|+|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+++|+ +|||
T Consensus         6 ~~~l~~~v~~l~~~~~~Pg~avaVv~~G~iv~~~~~G~ad~~~~~p~t~dT~f~IaSiTK~fTa~~il~Lveeg~-~LDd   84 (518)
T PRK13128          6 LPTLEAFVHAIPQNYKGPGGAVAVVKDGEVVLRHAWGFADLARRKAMTPETRMPICSVSKQFTCAVLLDCIGEPE-MLDA   84 (518)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEECCEEEEEEeEEeeccccCCCCCCCCeEechhhHHHHHHHHHHHHHhcCC-CCCC
Confidence            457778888888888999999999999999999999999999999999999999999999999999999999986 9999


Q ss_pred             chhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcc--cCCCcCCCCHHHHHHHHHhc-CCCCCCCCceecccCcHHHH
Q 004807          311 NIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLS--SENPLLICDWDECLNRIALS-APETEPGQEQLYHYLSFGWL  387 (729)
Q Consensus       311 ~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~--~~~~~~~~~~~~~~~~l~~~-~~~~~PG~~~~Ysn~~~~~l  387 (729)
                      ||.+|||+|+.   ..|||||||+||||++++.....  ..++...+..++..+.+... ++.++||++|.|||.||. |
T Consensus        85 pv~~yLPe~~~---~~iTvr~LLtHTSGl~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~PGt~~~YSN~gy~-L  160 (518)
T PRK13128         85 ALAAYLDQFED---PRPAVRDLCNNQSGLRDYWALTVLCGAAPEGIFLPDQAQNLLRRLKTTHFAPGTHYSYCNGNFR-I  160 (518)
T ss_pred             cHHHhcCCCCC---CCChHHHHhhCCCCCCccchhhhhcccccccCCCHHHHHHHHHhhccccCCCCCeeEEeCHHHH-H
Confidence            99999999985   46999999999999997532111  11222234556666666553 568999999999999998 9


Q ss_pred             HHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhh
Q 004807          388 CGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA  467 (729)
Q Consensus       388 Lg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  467 (729)
                      ||.|||+++|++|++|++++||+||||++|++..  +......+..|.......    +       .|            
T Consensus       161 Lg~iIE~vtG~~~~~~l~~~If~PLGM~~T~~~~--~~~~~~~a~Gy~~~~~~~----~-------~p------------  215 (518)
T PRK13128        161 LADLIEQHTGRSLADLLAERIFAPAGMKTAELIP--DTALFDECTGYEGDTVRG----F-------LP------------  215 (518)
T ss_pred             HHHHHHHHhCCCHHHHHHHhhhcccCCCccccCc--cccccccccccccCCCCC----c-------cc------------
Confidence            9999999999999999999999999999997742  211222232322110000    0       00            


Q ss_pred             ccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCC
Q 004807          468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGG  507 (729)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg  507 (729)
                          . .+.    ..+.|+||++||+.||+||+++++++.
T Consensus       216 ----~-~~~----~~~~g~gGl~STa~Dma~~~~~l~~~~  246 (518)
T PRK13128        216 ----A-INR----IHWLGDAGICASLDDMIAWEQFIDRTR  246 (518)
T ss_pred             ----C-ccc----ccccCCcceEcCHHHHHHHHHHHHccC
Confidence                0 000    112578899999999999999987653

>PF00144 Beta-lactamase: Beta-lactamase; InterPro: IPR001466 This entry represents the serine beta-lactamase-like superfamily

Probab=100.00  E-value=7.3e-46  Score=400.02  Aligned_cols=244  Identities=28%  Similarity=0.425  Sum_probs=194.8

Q ss_pred             HHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          234 LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       234 l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +++.+++.+++.++||++++|+++|+++++.+||+++...+.|++++|+|+++|+||+||++++++|+++|+|+||+||.
T Consensus         1 ~~~~i~~~~~~~~~~g~a~~v~~~g~~~~~~~~G~~~~~~~~~~~~~t~~~i~SvsK~~ta~~v~~l~~~G~l~ld~~v~   80 (329)
T PF00144_consen    1 IDRIIEQFMERYGIPGAAVAVIHNGKIVYEQYYGYADKQTGKPMTPDTVFRIGSVSKSFTATAVMQLIDEGKLDLDDPVS   80 (329)
T ss_dssp             HHHHHHHHHHHTTESEEEEEEEETTEEEEEEEEEEEETTTTEEESTTSBEEEGGGHHHHHHHHHHHHHHTTSSGTTSBGG
T ss_pred             ChHHHHHHHHhCCCcEEEEEEEECCEEEEEEEEeecccccCCCCCccceeeccCCcceeehhhhhhhhccccccccCccc
Confidence            57788888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHH
Q 004807          314 NIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIE  393 (729)
Q Consensus       314 ~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie  393 (729)
                      +|||++.....++|||+|||+||||+++..........  ....+++++.+...++.++||+.|.|||.+|. |||.|||
T Consensus        81 ~ylp~~~~~~~~~iTi~~LL~htSGl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~-ll~~ile  157 (329)
T PF00144_consen   81 KYLPEFPDPGKEKITIRDLLTHTSGLPDYEASDELFGD--KPFWDELLQYLANLPLNFPPGTQFAYSNTNYQ-LLGEILE  157 (329)
T ss_dssp             GTTTTGTTCGGTTEBHHHHHTTHSSHSSSSHTTTHTSH--HHHHHHHHHHHHHSCSSSSTTSEEE--HHHHH-HHHHHHH
T ss_pred             ccccccccccccCcccceeceeecCCCccccccccccc--ccchhHHHhhhhcccccccccccccccCcchh-hhhHHHH
Confidence            99998877777889999999999999986332221110  01126899999999999999999999999998 9999999


Q ss_pred             HHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhcccccc
Q 004807          394 RASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAV  473 (729)
Q Consensus       394 ~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  473 (729)
                      +++|++|+++++++||+||||++|.|.. +.......+..+..........                            .
T Consensus       158 ~~tg~~~~~~~~~~i~~plgm~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------~  208 (329)
T PF00144_consen  158 RVTGKSFEELLQENIFQPLGMKHTGFGP-PDAWPPRDAIGYYGNGDQASSP----------------------------P  208 (329)
T ss_dssp             HHHTSHHHHHHHHHTTTTTTSTTEESSB-GGGGGGGBEEEEEETTEEECEE----------------------------S
T ss_pred             HhccchhHHHHHHHHHHHhhcccccccc-cccccccccccccccccccccc----------------------------c
Confidence            9999999999999999999999997743 2222333333322111110000                            0


Q ss_pred             ccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          474 FNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       474 ~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                      .....   ...|+||+++|++||+||++++++++.+...
T Consensus       209 ~~~~~---~~~~aggl~st~~Dlak~~~~~~~~~~~~~~  244 (329)
T PF00144_consen  209 GYNPN---PYYGAGGLFSTARDLAKFGQLLLNGGLILSP  244 (329)
T ss_dssp             CTTHH---HHTTTTTEEECHHHHHHHHHHHHHTGGSSCH
T ss_pred             ccccc---cccccCccchhhHHHHHHHHHHhCCCccchh
Confidence            00000   0128999999999999999888888877665

It is a group of diverse group of sequences that includes D-alanyl-D-alanine carboxypeptidase B, aminopeptidase (DmpB), alkaline D-peptidase, animal D-Ala-D-Ala carboxypeptidase homologues and the class A and C beta-lactamases and eukaryotic beta-lactamase homologues which are variously described as: transesterases, non-ribosomal peptide synthetases and hypothetical proteins. Many are serine peptidases belonging to MEROPS peptidase families S11 (D-Ala-D-Ala carboxypeptidase A family) and S12 (D-Ala-D-Ala carboxypeptidase B family, clan SE). The beta-lactamases are classified as both S11 and S12 non-peptidase homologues; these either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Beta-lactamase catalyses the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins []. There are four groups, classed A, B, C and D according to sequence, substrate specificity, and kinetic behaviour: class A (penicillinase-type) is the most common []. The genes for class A beta-lactamases are widely distributed in bacteria, frequently located on transmissible plasmids in Gram-negative organisms, although an equivalent chromosomal gene has been found in a few species []. Class A, C and D beta-lactamases are serine-utilising hydrolases - class B enzymes utilise a catalytic zinc centre instead. The 3 classes of serine beta-lactamase are evolutionarily related and belong to a superfamily that also includes DD-peptidases and other penicillin-binding proteins []. All these proteins contain an S-x-x-K motif, the Ser being the active site residue. Although clearly related, however, the sequences of the 3 classes of serine beta-lactamases vary considerably outside the active site. ; PDB: 1CI8_A 1CI9_B 1PW8_A 1PW1_A 1CEF_A 3PTE_A 1MPL_A 1PWG_A 1CEG_A 1IKG_A ....

>COG1680 AmpC Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]

Probab=100.00  E-value=2.5e-39  Score=357.76  Aligned_cols=235  Identities=30%  Similarity=0.444  Sum_probs=176.5

Q ss_pred             ceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCC---ccCCC
Q 004807          248 LGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEF---KSNGK  324 (729)
Q Consensus       248 ~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~---~~~~~  324 (729)
                      +|++++|+++|++++.+.+|+++...+.+++++|+|+|+|+||+|||+++++|+|+|+|+|||||++|||+.   .... 
T Consensus        54 ~g~a~av~~~g~~~~~~~~g~~~~~~~~~~~~~t~f~i~S~TK~~ta~~i~~LveeG~l~lddpV~~ylP~~~~~~~~~-  132 (390)
T COG1680          54 PGLALAVVLDGKTVVAKGYGVADEGYGGPVTPPTVFRIASVTKSFTATLLGKLVEEGKLDLDDPVSKYLPEGKDPATGG-  132 (390)
T ss_pred             CceEEEEEECCEEEEEeccccccccccCCCCCCceeeehhhhHHHHHHHHHHHHHcCCCCCCchHHHhCCCccCCcCCc-
Confidence            599999999999989899999999999999999999999999999999999999999999999999999962   2223 


Q ss_pred             CCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcC--CCCCCCCceecccCcHHHHHHHHHHHHhCCCHHH
Q 004807          325 DLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSA--PETEPGQEQLYHYLSFGWLCGGIIERASGKKFQE  402 (729)
Q Consensus       325 ~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~  402 (729)
                      ..|||||||+||||++...............+.+.+.+.+...+  ...+||+.+.|||.+|. +||.|+|+++|++|++
T Consensus       133 ~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pG~~~~Ysn~~~~-lLg~ive~v~G~~~~~  211 (390)
T COG1680         133 APITLRDLLTHTSGLPFPEDYAYAVPKRLVQDQEAALEYLASLPPELAPPPGTAFAYSNSNYG-LLGAILERVTGKPLEE  211 (390)
T ss_pred             cceeHHHhhhcccCCCCcccccccccchhhhhHHHHHHHHHhccccccCCCCcceeeecccHH-HHHHHHHHhcCCCHHH
Confidence            58999999999999997221101111112234555566777776  46677999999999999 9999999999999999


Q ss_pred             HHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccc
Q 004807          403 ILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRA  482 (729)
Q Consensus       403 ~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (729)
                      +++++||+||||++|.+. .++....+.+..........        .....+..+                   .....
T Consensus       212 ~~~~~i~~PLGm~~t~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-------------------~~~~~  263 (390)
T COG1680         212 LLRERIFEPLGMTSTGFG-PPPAPQARLAAGLAPAVGGG--------GEVDDPGTF-------------------GLGSA  263 (390)
T ss_pred             HHHHHhhcccCCCccccc-cChhhhcccccccccccccC--------CccccCccc-------------------ccccc
Confidence            999999999999999764 33333333322210000000        000011111                   01111


Q ss_pred             cCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          483 IIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       483 ~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                      ..++||+++|++||+||++++++++.+.+.
T Consensus       264 ~~~~~gl~~t~~d~~~~~~~~l~~~~~~~~  293 (390)
T COG1680         264 LAGAGGLFSTARDMARFGQALLNGGVLLGR  293 (390)
T ss_pred             CCCCCceecccchHHHHHHHHhcCCCccch
Confidence            346899999999999999999999866555

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=99.97  E-value=3.4e-30  Score=286.60  Aligned_cols=193  Identities=26%  Similarity=0.510  Sum_probs=163.5

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK   80 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~   80 (729)
                      |+|+||+|++.+++.|.|+++|++.++++|++|+|++||||||||||||+|+.+  |++++||||||+++++++|..+++
T Consensus       248 i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaDpHpGNi~v~~~--g~i~~lDfGi~g~l~~~~r~~l~~  325 (517)
T COG0661         248 IDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSD--GRIVLLDFGIVGRLDPKFRRYLAE  325 (517)
T ss_pred             eCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccCCCccceEEecC--CcEEEEcCcceecCCHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999976  899999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHcCCcCC-CCcHHHHHHHHHHHhhccC-ChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhh
Q 004807           81 MFFAAAEGDHVALLSAFAEMGLRLR-LDVPEQAMEVSTLFFRTSA-PANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEV  158 (729)
Q Consensus        81 L~~a~~~~D~~~~~~~l~~lG~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (729)
                      ++.|+.++|++.+.+.+.++|+..+ .+.......+..++..... +..            ..+..+...+.+..    .
T Consensus       326 ~~~a~~~rD~~~v~~~~~~~G~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~  389 (517)
T COG0661         326 LLLAFLNRDYDRVAELHVELGYVPPDTDRDPLAAAIRAVLEPIYGKPLE------------EISFGEILDKLFEV----A  389 (517)
T ss_pred             HHHHHHhhCHHHHHHHHHHhCCCCCccchHHHHHHHHHHHHhhhCCChh------------hccHHHHHHHHHHH----H
Confidence            9999999999999999999999854 4555555555555543311 111            11112222333333    4


Q ss_pred             hhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhhccCCCC
Q 004807          159 KRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKE  213 (729)
Q Consensus       159 ~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~~~~~p~  213 (729)
                      .++.  +++|++++++.|++.++||++++|+|++|+...+.|+..++...++.|.
T Consensus       390 ~~~~--~r~p~~l~ll~r~~~~vEg~~~~ldp~~~~~~~a~p~~~~~~~~~~~~~  442 (517)
T COG0661         390 RRFP--MRLPPELVLLQRTLLLVEGVGRQLDPRFNLWAVAQPLLAKWLKKQLSPK  442 (517)
T ss_pred             HhcC--ccCCHHHHHHHHHHHHHHHHHHhhCccccHHHHhhHHHHHHHHHhhhHH
Confidence            4444  7999999999999999999999999999999999999999999998886

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.96  E-value=4.8e-30  Score=287.58  Aligned_cols=199  Identities=26%  Similarity=0.395  Sum_probs=165.6

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSSSMKQAL   78 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~~~r~~l   78 (729)
                      ++|++++|++.+.+.|+|++++++.++++|++|+|++||||||||||||+|+.++  +++++++|||||++++++.|+.+
T Consensus       243 i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~~r~~l  322 (537)
T PRK04750        243 MYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKEDKRYL  322 (537)
T ss_pred             ecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999998762  13999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHcCCcCC-CCcHHHHHHHHHHHhhccC-ChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHH
Q 004807           79 AKMFFAAAEGDHVALLSAFAEMGLRLR-LDVPEQAMEVSTLFFRTSA-PANEAFETVKNLSEQRAKNLKVIQEKMKLNQK  156 (729)
Q Consensus        79 ~~L~~a~~~~D~~~~~~~l~~lG~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (729)
                      ++++.|+..+|++.+++.+.++|...+ .+..++..++..++..+.. +..       ++     +....+.+++..   
T Consensus       323 ~~~~~a~~~~D~~~v~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~l~-------~i-----~~~~~l~~l~~~---  387 (537)
T PRK04750        323 AENFLAFFNRDYRRVAELHVESGWVPPDTRVEELEFAIRAVCEPIFDKPLA-------EI-----SFGHVLLRLFNT---  387 (537)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhCCCcc-------cc-----cHHHHHHHHHHH---
Confidence            999999999999999999999999744 3555555555554443321 211       11     112333444443   


Q ss_pred             hhhhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhhccCCCCCccc
Q 004807          157 EVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVS  217 (729)
Q Consensus       157 ~~~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~~~~~p~~~~~  217 (729)
                       .++++  +.+|++++++.|++.++||++++|||++|+++.++||+.+++.++++|....+
T Consensus       388 -~r~~~--~~ip~~l~ll~ktl~~lEG~~r~LdP~~d~~~~a~p~l~~~~~~~~~~~~~~~  445 (537)
T PRK04750        388 -ARRFN--VEIQPQLVLLQKTLLNVEGLGRQLDPQLDLWKTAKPFLERWMKEQVGPRALVR  445 (537)
T ss_pred             -HHHCC--CcccHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcChHHHHH
Confidence             55565  79999999999999999999999999999999999999999999999876554

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.93  E-value=2.5e-25  Score=247.18  Aligned_cols=194  Identities=22%  Similarity=0.437  Sum_probs=162.1

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK   80 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~   80 (729)
                      ++|.+++++......+.++.+++..+++.++.|++.+|+||+|||||||+++++  |+++|+|||++++++++.|..+++
T Consensus       240 i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D~hPgNilv~~~--g~i~liDfG~~~~l~~~~r~~l~~  317 (437)
T TIGR01982       240 IDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHADLHPGNIFVLKD--GKIIALDFGIVGRLSEEDRRYLAE  317 (437)
T ss_pred             ECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCCCCcccEEECCC--CcEEEEeCCCeeECCHHHHHHHHH
Confidence            579999999887777889999999999999999999999999999999999765  899999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHcCCcC-CCCcHHHHHHHHHHHhhccC-ChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhh
Q 004807           81 MFFAAAEGDHVALLSAFAEMGLRL-RLDVPEQAMEVSTLFFRTSA-PANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEV  158 (729)
Q Consensus        81 L~~a~~~~D~~~~~~~l~~lG~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (729)
                      ++.|+..+|.+.+.+.+.++|+.. ..+...+..++..++..... +..            .....+.+.+++..    .
T Consensus       318 l~~a~~~~D~~~l~~~l~~~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~----~  381 (437)
T TIGR01982       318 ILYGFLNRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIFGQPLK------------EISVGRLLAGLFKI----T  381 (437)
T ss_pred             HHHHHHhcCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhCCChh------------hCCHHHHHHHHHHH----H
Confidence            999999999999999999999974 34655566666555543321 111            11122334444443    4


Q ss_pred             hhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhhccCCCCC
Q 004807          159 KRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEP  214 (729)
Q Consensus       159 ~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~~~~~p~~  214 (729)
                      .++.  +++|++++++.|++.++||++++|+|++|+.+.++||+.+++.++++|..
T Consensus       382 ~~~~--~~~p~~~~~l~r~l~~leg~~~~L~p~~~~~~~~~p~~~~~~~~~~~~~~  435 (437)
T TIGR01982       382 RDFN--MELQPQLLLLQKTLLTVEGVGRQLDPDLNMWKVAEPFVKRWIRKRLGPKA  435 (437)
T ss_pred             HHCC--ccCCHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhcChhc
Confidence            4444  79999999999999999999999999999999999999999999998864

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=99.91  E-value=5.3e-24  Score=235.88  Aligned_cols=200  Identities=28%  Similarity=0.464  Sum_probs=145.0

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSSSMKQAL   78 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~~~r~~l   78 (729)
                      ++|+||+|++.+++.|+++.+|+..++++|++|||.+||||||||||||+|++++  +++++|+|||+++.++.++|..|
T Consensus       284 ~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaDPHPGNilv~~~~~~~~~ivllDhGl~~~is~~~r~~~  363 (538)
T KOG1235|consen  284 VDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHADPHPGNILVRPNPEGDEEIVLLDHGLYAVISHKTRKDY  363 (538)
T ss_pred             cCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCccCCCCCCcEEEecCCCCCccEEEEcccccccccHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999743  67999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHcCCcCCCCcHHHHHHHHHHHhhccCChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhh
Q 004807           79 AKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEV  158 (729)
Q Consensus        79 ~~L~~a~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (729)
                      +++|.|+...|...+.+...++|...+.+.+.+...+.........+.... ....................+....+..
T Consensus       364 ~~~~~a~~~~d~~~~~~~~~~~g~~~d~~~~~fa~~l~~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L  442 (538)
T KOG1235|consen  364 AELWLALVFEDEKAMQALAEQLGLGLDDLYPLFATALTGRPWDSVIGAGIT-KYLKGLEEDADENQKIASAKFPGISQLL  442 (538)
T ss_pred             HHHHHHHhcccHHHHHHHHHHhccccchhhhhhHHHHhCCchhhccccchh-hhhhhhhhhhhhHHHHHHHHhhHHHHHH
Confidence            999999999888889999999998654444444444333222221110000 0011111111111222222222222222


Q ss_pred             hhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccccccchhhhh
Q 004807          159 KRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQ  207 (729)
Q Consensus       159 ~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~~~~~l~  207 (729)
                            .++|+.+.++.|+..+++++...++...+....+..+.+..+.
T Consensus       443 ------~~~p~~i~li~k~~~l~r~~~~~l~~~~~~~~~f~~~~~~~~~  485 (538)
T KOG1235|consen  443 ------RRMPREILLILKTNDLLRGLSSNLGIPSSLERSFLEMARLCLR  485 (538)
T ss_pred             ------HhchHhhhhhcccHHHHHhHHHHhccccccchHHHHHHHHHHH
Confidence                  4779999999999999999999999988865444444444333

>KOG1234 consensus ABC (ATP binding cassette) 1 protein [General function prediction only]

Probab=99.70  E-value=4.9e-17  Score=161.36  Aligned_cols=189  Identities=15%  Similarity=0.188  Sum_probs=141.2

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK   80 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~   80 (729)
                      +.|++|+....+  .+.-|+.|+..+++.++++||++.|++.||+++||++... +.+|.|||||..+.+++++.+.|++
T Consensus       169 ~~G~pid~~~~~--sQ~~rn~i~~~~l~lcLrEif~f~fMQTDPNWsNFly~~~-tk~i~LlDFGAsr~y~~~F~d~Y~~  245 (363)
T KOG1234|consen  169 GQGLPIDKTAKL--SQETRNYIGYKLLELCLREIFEFRFMQTDPNWSNFLYNGR-TKKIELLDFGASREYGEKFIDKYIR  245 (363)
T ss_pred             hcCccchhhhcc--cHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhccCCC-cceEEEEeccccccccHHHHHHHHH
Confidence            468888887764  4578999999999999999999999999999999999875 5689999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHcCCcCCCCcHHHHHHHHHHHhhccCChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhhhh
Q 004807           81 MFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLFFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKR  160 (729)
Q Consensus        81 L~~a~~~~D~~~~~~~l~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (729)
                      ++.|++.+|.+.+.+...+||++...........-.+-++....+..    .-....+........++.++..+.++   
T Consensus       246 ~~~aaa~~dr~~v~e~S~~lgfLtg~Es~~m~DAHv~sv~ilgepfa----~~~pydF~~q~~t~ri~~lipvmL~h---  318 (363)
T KOG1234|consen  246 LLKAAADRDREGVIEMSRELGFLTGYESKVMEDAHVESVMILGEPFA----SDGPYDFGDQTVTDRIQNLIPVMLRH---  318 (363)
T ss_pred             HHHHHHhcchHHHHHHHHHhcccccchHHHHHHHhhhHhhhcccccc----CCCCcCcCccHHHHHHHhhhHHHHhc---
Confidence            99999999999999999999998432221111111111111111111    11112222333445566666654433   


Q ss_pred             cCCCCCCCcchhhhHHHHHHHHHHhhhcccccccccccccc
Q 004807          161 FNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIMRPF  201 (729)
Q Consensus       161 ~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~~~~  201 (729)
                       + +..+|.|.+.++|.+++..-+|.+|++.+.+.+++...
T Consensus       319 -R-L~pPPeEtYsLHRklsG~fL~cakl~A~v~C~~lf~e~  357 (363)
T KOG1234|consen  319 -R-LCPPPEETYSLHRKLSGAFLLCAKLGATVPCRDLFKEI  357 (363)
T ss_pred             -c-CCCCcHHHHHHHHHhhhHHHHHHHhcCCCcHHHHHHHH
Confidence             2 25888899999999999999999999999988877543

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=99.67  E-value=2.6e-16  Score=164.56  Aligned_cols=187  Identities=19%  Similarity=0.236  Sum_probs=142.6

Q ss_pred             CceecCCHHhHhhcCC-CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC------------------------
Q 004807            2 DGIRLNDCESLEAFGV-NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP------------------------   56 (729)
Q Consensus         2 ~G~ki~d~~~l~~~~~-d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~------------------------   56 (729)
                      +|+++..+.+-+...+ =.++++..+++++++|++.++|.|||.||||++++..++                        
T Consensus       328 ~Gl~v~~~v~~~~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~~t~~~~~~~~~~e~~~~i~~~L~~~~  407 (565)
T KOG1236|consen  328 RGLSVLRFVKWKSQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFNKTEDNLRGVHKAEKASAIKRGLEWFR  407 (565)
T ss_pred             ccccHHhhhhcccChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEecCCCccccccccchhhhHHhhhhhhhh
Confidence            4666666655333222 368899999999999999999999999999999997644                        


Q ss_pred             -----------------CCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCcCCC-CcHHHHHHHHHH
Q 004807           57 -----------------HRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRL-DVPEQAMEVSTL  118 (729)
Q Consensus        57 -----------------g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~lG~~~~~-~~~~~~~~~~~~  118 (729)
                                       .++|+||-|++..+++..+.++..|+.|++..|...+.+.+.+..-.... |...+...+..+
T Consensus       408 ~e~~d~~~~~~~~~~~~P~lvflDtGiv~kLs~qn~~N~l~lF~av~~~~Gy~ag~lml~~Sr~q~~~d~e~F~~kvEkl  487 (565)
T KOG1236|consen  408 SEVRDARFTDSPDLEYEPTLVFLDTGIVTKLSHQNQMNLLSLFRAVARFDGYDAGELMLERSRQQQCIDPERFARKVEKL  487 (565)
T ss_pred             hhhhhhhhhccccccCCCeEEEecchhhhccChhhHHHHHHHHHHHHHhcchhHHHHHHhhcccccCCCHHHHHHHHHHH
Confidence                             47999999999999999999999999999999999999999988765333 334455556555


Q ss_pred             HhhccCChhhHHHHHHhhHHHHHhhHHHHHHHHHHhHHhhhhcCCCCCCCcchhhhHHHHHHHHHHhhhccccccccccc
Q 004807          119 FFRTSAPANEAFETVKNLSEQRAKNLKVIQEKMKLNQKEVKRFNPVDAFPGDIVIFSRVLNLLRGLSSTMNVRIVYLDIM  198 (729)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~l~R~l~~l~gi~~~L~p~~~~~~~~  198 (729)
                      +......        .++  ....+.+.+.+++.+    ++.|+  +++..++..+.-++..+||.+++|||++|+.+..
T Consensus       488 v~~~~st--------~sl--~tl~i~~ll~em~tm----vreH~--V~ids~f~tvvlsilvlEG~gRqLdP~lDl~~~~  551 (565)
T KOG1236|consen  488 VLKARST--------KSL--RTLNIGDLLSEMFTM----VREHH--VRIDSNFTTVVLSILVLEGFGRQLDPDLDLFQLR  551 (565)
T ss_pred             HHHhhhh--------ccc--CcCcHHHHHHHHHHH----HHHhh--eeeccchHHHHHHHHHHhhhccccCCCcchhhhH
Confidence            5433200        001  123345566677766    45555  7999999999999999999999999999988855


Q ss_pred             cccchh
Q 004807          199 RPFAEY  204 (729)
Q Consensus       199 ~~~~~~  204 (729)
                      .+++..
T Consensus       552 ~~~l~~  557 (565)
T KOG1236|consen  552 TFLLNV  557 (565)
T ss_pred             HHHHHH
Confidence            444443

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.94  E-value=1.5e-09  Score=107.58  Aligned_cols=60  Identities=37%  Similarity=0.694  Sum_probs=49.9

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      |||++++|...+.+      .+++.+.+ .++|++.+||||+|||||||+++.   +.+.+|||++.+..
T Consensus       125 IeG~~l~d~~~i~e------~~~~ki~~-~ikqlH~~G~~HGD~hpgNFlv~~---~~i~iID~~~k~~~  184 (229)
T PF06176_consen  125 IEGVELNDIEDIDE------DLAEKIVE-AIKQLHKHGFYHGDPHPGNFLVSN---NGIRIIDTQGKRMS  184 (229)
T ss_pred             ecCeecccchhcCH------HHHHHHHH-HHHHHHHcCCccCCCCcCcEEEEC---CcEEEEECcccccc
Confidence            68999999876542      45666664 579999999999999999999985   47999999999864

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=98.62  E-value=3.9e-08  Score=99.32  Aligned_cols=68  Identities=26%  Similarity=0.493  Sum_probs=49.1

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL   78 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l   78 (729)
                      |+|..+.++..+.      .++... +...+.+++..|++|+|||||||+++++  | |+|+|||++....++.-..+
T Consensus       125 i~G~tL~~~~~~~------~~~~~~-i~~~l~~lH~~gi~H~Dikp~Nili~~~--g-i~liDfg~~~~~~e~~a~d~  192 (232)
T PRK10359        125 IEGVELNDMPEIS------EDVKAK-IKASIESLHQHGMVSGDPHKGNFIVSKN--G-LRIIDLSGKRCTAQRKAKDR  192 (232)
T ss_pred             ECCccHHHhhhcc------HHHHHH-HHHHHHHHHHcCCccCCCChHHEEEeCC--C-EEEEECCCcccccchhhHHH
Confidence            4677676653321      223333 3445899999999999999999999865  6 99999999998865444433

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=98.44  E-value=2.5e-07  Score=91.66  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=56.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004807           18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAF   97 (729)
Q Consensus        18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l   97 (729)
                      +..+++..+++++.++-...|++|+|+||+||++. +  +++.|+|||++..++..       ...++.++|.+.+...+
T Consensus       118 ~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~--~~~~liDFG~a~~~~~~-------~~~~~~~~~~~~~~~~~  187 (190)
T cd05145         118 EAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-D--GKPYIIDVSQAVELDHP-------NALEFLRRDIRNINRFF  187 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-C--CCEEEEEcccceecCCC-------CHHHHHHHHHHHHHHHh
Confidence            44667888887765554449999999999999997 4  79999999999999875       45566678887777665


Q ss_pred             H
Q 004807           98 A   98 (729)
Q Consensus        98 ~   98 (729)
                      .
T Consensus       188 ~  188 (190)
T cd05145         188 R  188 (190)
T ss_pred             h
Confidence            4

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.40  E-value=6e-07  Score=89.57  Aligned_cols=69  Identities=19%  Similarity=0.289  Sum_probs=57.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH----HHHHHHHHhC
Q 004807           17 VNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL----AKMFFAAAEG   88 (729)
Q Consensus        17 ~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l----~~L~~a~~~~   88 (729)
                      .+..+++..+++.. .+++..|++|+|+||+||+++.+  +++.|+|||+++.++.+.+..+    ...+.++..+
T Consensus       125 ~~~~~~~~~i~~~l-~~lh~~gi~H~Dl~p~Nill~~~--~~~~liDfg~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (198)
T cd05144         125 EDPEEVLDEILEEI-VKAYKHGIIHGDLSEFNILVDDD--EKIYIIDWPQMVSTDHPNAEELLDRDVENILRFFRR  197 (198)
T ss_pred             ccHHHHHHHHHHHH-HHHHHCCCCcCCCCcccEEEcCC--CcEEEEECCccccCCCccHHHHHHHHHHHHHHHHhc
Confidence            34567777777765 56788999999999999999864  8999999999999999999998    6777776543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>smart00090 RIO RIO-like kinase

Probab=98.26  E-value=2e-06  Score=88.23  Aligned_cols=73  Identities=22%  Similarity=0.417  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHHHHHcC-ccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 004807           20 QKVVEEITRAYAHQIYVDG-FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFA   98 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~G-ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~   98 (729)
                      ..++..++++ +.+++..| ++|+|+||+||+++ +  +++.|+|||++.......+       .+++++|.+.+...+.
T Consensus       151 ~~i~~qi~~~-l~~LH~~g~iiH~Dikp~NIli~-~--~~i~LiDFg~a~~~~~~~~-------~~~~~~d~~~~~~~~~  219 (237)
T smart00090      151 FELYDDILEE-MRKLYKEGELVHGDLSEYNILVH-D--GKVVIIDVSQSVELDHPMA-------LEFLERDIRNIIRFFR  219 (237)
T ss_pred             HHHHHHHHHH-HHHHHhcCCEEeCCCChhhEEEE-C--CCEEEEEChhhhccCCcch-------HHHHHHHHHHHHHHHH
Confidence            4677777755 66789999 99999999999997 3  7999999999999888775       4668999999999999


Q ss_pred             HcCCc
Q 004807           99 EMGLR  103 (729)
Q Consensus        99 ~lG~~  103 (729)
                      ++|+.
T Consensus       220 ~~~~~  224 (237)
T smart00090      220 RKGVD  224 (237)
T ss_pred             HcCCC
Confidence            99985

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.17  E-value=3e-06  Score=83.36  Aligned_cols=91  Identities=20%  Similarity=0.287  Sum_probs=71.6

Q ss_pred             ceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHH
Q 004807            3 GIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMF   82 (729)
Q Consensus         3 G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~   82 (729)
                      |+++..+........+..++...+++.+..++...|++|+|+++.||++.+   +++++||||++......       ..
T Consensus        92 G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~---~~~~iIDf~qav~~~~p-------~a  161 (188)
T PF01163_consen   92 GVPLPRLKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDD---GKVYIIDFGQAVDSSHP-------NA  161 (188)
T ss_dssp             TEEGGCHHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEET---TCEEE--GTTEEETTST-------TH
T ss_pred             ccchhhHHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeec---ceEEEEecCcceecCCc-------cH
Confidence            888888777664467899999999999999999999999999999999985   49999999999988753       23


Q ss_pred             HHHHhCCHHHHHHHHHHcCCc
Q 004807           83 FAAAEGDHVALLSAFAEMGLR  103 (729)
Q Consensus        83 ~a~~~~D~~~~~~~l~~lG~~  103 (729)
                      ..++.+|.+-+.+.+.+.|..
T Consensus       162 ~~~l~RDi~ni~~fF~~~~~~  182 (188)
T PF01163_consen  162 EELLRRDIENIIRFFKKKGVQ  182 (188)
T ss_dssp             HHHHHHHHHHHHHHHHCCC--
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            345567888888888888763

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK15442 beta-lactamase TEM; Provisional

Probab=98.13  E-value=0.00026  Score=74.36  Aligned_cols=36  Identities=31%  Similarity=0.478  Sum_probs=34.1

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|..|.++|+.|.+++++++..+++|+++||++|.
T Consensus        57 n~d~~fp~aSt~K~~i~~avl~~v~~g~l~L~~~v~   92 (284)
T PRK15442         57 RPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIH   92 (284)
T ss_pred             cCCCcccchHHHHHHHHHHHHHHHHCCCCCCCceEE
Confidence            678889999999999999999999999999999986

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=98.03  E-value=8.9e-06  Score=80.60  Aligned_cols=56  Identities=11%  Similarity=0.066  Sum_probs=40.6

Q ss_pred             cCCCHHHHHHHHHH--HHHHHH-HHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           15 FGVNKQKVVEEITR--AYAHQI-YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        15 ~~~d~~~la~~l~~--~~~~qi-f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ...+...+...+.+  ..+.++ ...|++|+|+||+||+++.   +++.|+|||+.......
T Consensus       112 ~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~~---~~v~LiDFG~a~~~~~~  170 (190)
T cd05147         112 APLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYHD---GKLYIIDVSQSVEHDHP  170 (190)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEEC---CcEEEEEccccccCCCc
Confidence            34555555444433  334566 4889999999999999973   68999999999866543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>COG1686 DacC D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]

Probab=97.96  E-value=4.2e-05  Score=83.45  Aligned_cols=115  Identities=17%  Similarity=0.196  Sum_probs=72.0

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcC
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH  335 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtH  335 (729)
                      ..|+++|++             ++|+++++||+||.+|+.+++..++.|+|++|++|.-=-..+..     -+       
T Consensus        47 ~sGkVLy~k-------------n~d~~~~pASlTKlMTayv~~ea~~~gki~~~~~v~is~~a~~~-----~~-------  101 (389)
T COG1686          47 DSGKVLYSK-------------NADARRPPASLTKLMTAYVVLEALKAGKIKLDDKVTISENAWAK-----GG-------  101 (389)
T ss_pred             CCCcEeecc-------------CCCCCCCccHHHHHHHHHHHHHHhhccCCCccceecccHhhhhc-----CC-------
Confidence            678888752             78899999999999999999999999999999988521111111     00       


Q ss_pred             CCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhC--CCHHHHHHHHhhhccC
Q 004807          336 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASG--KKFQEILEEGIIQPLS  413 (729)
Q Consensus       336 tSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG--~~~~~~l~e~If~PLG  413 (729)
                      .|.++-.        +....+.++++..+.-            +| .|-  ..-.+.|.+.|  ..|-+.|.++ .+-||
T Consensus       102 ~S~~~l~--------~G~~~tv~dLl~gllv------------~S-aND--AA~aLAe~~~Gs~~~Fv~~MN~k-A~~LG  157 (389)
T COG1686         102 GSKMFLK--------PGETVTVRDLLKGLLV------------QS-AND--AAVALAEHLAGSEDAFVAKMNAK-AKELG  157 (389)
T ss_pred             Cccceec--------cCCEEEHHHHHHHHHH------------hc-ccH--HHHHHHHHcCCCHHHHHHHHHHH-HHHhC
Confidence            1222110        0112445555554321            11 121  23345566665  3577777776 46999


Q ss_pred             CCCccC
Q 004807          414 IDGELY  419 (729)
Q Consensus       414 m~~T~~  419 (729)
                      |++|.|
T Consensus       158 m~nT~F  163 (389)
T COG1686         158 MKNTHF  163 (389)
T ss_pred             CCCCEe
Confidence            999977

>cd05119 RIO RIO kinase family, catalytic domain

Probab=97.87  E-value=2.3e-05  Score=77.01  Aligned_cols=61  Identities=15%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807           17 VNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK   80 (729)
Q Consensus        17 ~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~   80 (729)
                      .....++..++.+........|++|+|+||+||++. +  +.+.|+|||++.++..+.+..+.+
T Consensus       114 ~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~--~~~~liDfg~a~~~~~~~~~~~~~  174 (187)
T cd05119         114 EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-D--GKVYIIDVPQAVEIDHPNAEEFLR  174 (187)
T ss_pred             ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-C--CcEEEEECcccccccCcchHHHHH
Confidence            345667777776666444349999999999999998 4  799999999999999988877764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PF00768 Peptidase_S11: D-alanyl-D-alanine carboxypeptidase This is family S11 in the peptidase classification

Probab=97.86  E-value=7.5e-05  Score=76.64  Aligned_cols=54  Identities=26%  Similarity=0.356  Sum_probs=42.5

Q ss_pred             CceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          247 ILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       247 ~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.+-+..|+  ..|+++|++             +++..+.+||+||.+|+.+++..+++|+|+++++|.
T Consensus         9 ~~a~saiv~d~~tG~iL~~k-------------n~~~~~~~ASlTKlmTa~~~le~~~~~~l~~~~~v~   64 (240)
T PF00768_consen    9 ISAKSAIVMDADTGKILYSK-------------NADEKRPPASLTKLMTAYVVLEAIKNGKLSLDDKVT   64 (240)
T ss_dssp             -SSSEEEEEETTTSEEEEEE-------------STTSEBE-GGGHHHHHHHHHHHHHHTTSSTTTCEEE
T ss_pred             ccceEEEEEECCCCcChhhc-------------ccCceechhhHHHHHHHHHHHHHHHcCCCCcccccc
Confidence            334444555  468888752             677889999999999999999999999999999864

; InterPro: IPR001967 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S11 (D-Ala-D-Ala carboxypeptidase A family, clan SE). The protein fold of the peptidase domain for members of this family resembles that of D-Ala-D-Ala-carboxypeptidase B, the type example for clan SE. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endo-peptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S27) of serine protease have been identified, these being grouped into 6 clans (SA, SB, SC, SE, SF and SG) on the basis of structural similarity and other functional evidence. Structures are known for four of the clans (SA, SB, SC and SE): these appear to be totally unrelated, suggesting at least four evolutionary origins of serine peptidases and possibly many more []. Not with standing their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C clans have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (SA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Bacterial cell walls are complex structures containing amino acids and amino sugars, with alternating chains of N-acetylglucosamine and N-acetyl-muramic acid units linked by short peptides []: the link peptide in Escherichia coli is L-alanyl-D-isoglutamyl-L-meso-diaminopimelyl-D-alanine. The chains are usually cross-linked between the carboxyl of D-alanine and the free amino group of diaminopimelate. During the synthesis of peptidoglycan, the precursor has the described tetramer sequence with an added C-terminal D-alanine []. D-Ala-D-Ala carboxypeptidase A is involved in the metabolism of cell components []; it is synthesised with a leader peptide to target it to the cell membrane []. After cleavage of the leader peptide, the enzyme is retained in the membrane by a C-terminal anchor. There are three families of serine-type D-Ala-D-Ala peptidase, which are also known as low molecular weight penicillin-binding proteins. Family S11 contains only D-Ala-D-Ala peptidases, unlike families S12 and S13, which contain other enzymes, such as class C beta-lactamases and D-amino-peptidases []. Although these enzymes are serine proteases, some members of family S11 are partially inhibited by thiol-blocking agents [].; GO: 0009002 serine-type D-Ala-D-Ala carboxypeptidase activity, 0006508 proteolysis; PDB: 2BCF_A 1TVF_A 3MFD_B 1ES3_A 1ESI_A 1ES4_A 1ES2_A 1SKF_A 1ES5_A 1J9M_A ....

>PRK10001 D-alanyl-D-alanine carboxypeptidase fraction C; Provisional

Probab=97.83  E-value=7.4e-05  Score=81.87  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=39.2

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|+++|++             ++|..+.+||+||.+|+.+++..+++|+++|||.|.
T Consensus        48 ~TG~vL~~k-------------nad~~~~pAS~TKlMTa~v~~e~i~~g~l~ldd~v~   92 (400)
T PRK10001         48 ASGKVLAEG-------------NADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVT   92 (400)
T ss_pred             CCCcChhhc-------------CcCCCcCchHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence            578888753             567779999999999999999999999999999764

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=97.66  E-value=0.00013  Score=72.53  Aligned_cols=49  Identities=31%  Similarity=0.501  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+ +..++..|++|+|+||+||++. +  +++.++|||+.+..++.
T Consensus        94 ~~~~~i~~~-l~~lH~~gi~H~Dl~~~Nil~~-~--~~~~liDfg~a~~~~~~  142 (199)
T TIGR03724        94 ELLREIGRL-VGKLHKAGIVHGDLTTSNIIVR-D--DKLYLIDFGLGKYSDEI  142 (199)
T ss_pred             HHHHHHHHH-HHHHHHCCeecCCCCcceEEEE-C--CcEEEEECCCCcCCCcH
Confidence            566666654 4567899999999999999997 3  79999999998886544

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=97.66  E-value=0.0002  Score=71.76  Aligned_cols=65  Identities=26%  Similarity=0.452  Sum_probs=47.8

Q ss_pred             CceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807            2 DGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus         2 ~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +|..+.+.....  ...+..++..+.+ .+.+++..|++|+|+||+||++. +  +++.++|||+++.-++
T Consensus        82 ~G~~L~~~~~~~--~~~~~~i~~~i~~-~l~~lH~~~i~H~Dl~p~Nil~~-~--~~~~liDf~~a~~~~~  146 (211)
T PRK14879         82 EGEPLKDLINSN--GMEELELSREIGR-LVGKLHSAGIIHGDLTTSNMILS-G--GKIYLIDFGLAEFSKD  146 (211)
T ss_pred             CCcCHHHHHHhc--cHHHHHHHHHHHH-HHHHHHhCCcccCCCCcccEEEE-C--CCEEEEECCcccCCCc
Confidence            455555543321  1145677777775 46678999999999999999998 3  6899999999887543

>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional

Probab=97.60  E-value=0.00044  Score=75.99  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=39.7

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|+++|++             ++|....+||+||.+|+.++++.+++|+++||++|.
T Consensus        55 ~tG~vL~~k-------------nad~~~~pASlTKlMTa~lvleai~~g~l~ld~~v~   99 (403)
T PRK10793         55 NSGKVLAEQ-------------NADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVT   99 (403)
T ss_pred             CCCcEehhc-------------CcCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence            578888763             667789999999999999999999999999999875

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.60  E-value=3.3e-05  Score=74.53  Aligned_cols=49  Identities=22%  Similarity=0.284  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++++.+.++....+...+++|+|+||+||++. +  +++.+||||+++.-+
T Consensus        90 ~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~--~~~~liDf~~a~~~~  138 (170)
T cd05151          90 EKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-D--GRLWLIDWEYAGMND  138 (170)
T ss_pred             HHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-C--CeEEEEecccccCCC
Confidence            344444444333333344579999999999997 3  689999999988644

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.53  E-value=0.00024  Score=70.79  Aligned_cols=71  Identities=23%  Similarity=0.255  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCC-CCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDP-HPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAE   99 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDP-HPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~   99 (729)
                      .+...+++ .++++...|++|.|. +|+||+++.+  |++.|+|||+....++.-+     +..-+..+|..-+.+.+..
T Consensus        95 ~~~~qi~~-~L~~lH~~GIvHrDL~kp~NILv~~~--g~i~LIDFG~A~~~~~~~~-----~~r~L~~rDl~~llk~~~~  166 (218)
T PRK12274         95 AYFRAARR-LLQQLHRCGVAHNDLAKEANWLVQED--GSPAVIDFQLAVRGNPRAR-----WMRLLAREDLRHLLKHKRM  166 (218)
T ss_pred             HHHHHHHH-HHHHHHHCcCccCCCCCcceEEEcCC--CCEEEEECCCceecCCcch-----HHHHHHHHHHHHHHHHHHh
Confidence            34444444 466799999999999 6999999864  8999999999997776443     3333445788888787655

>PRK11397 dacD D-alanyl-D-alanine carboxypeptidase; Provisional

Probab=97.46  E-value=0.00064  Score=74.29  Aligned_cols=45  Identities=13%  Similarity=0.209  Sum_probs=38.9

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|+++|++             +.|..+.+||+||.+|+.+++..+++|+++||+.|.
T Consensus        45 ~tG~vL~~k-------------n~d~~~~pASlTKlMTa~lv~eai~~g~l~ld~~v~   89 (388)
T PRK11397         45 TTGQILTAG-------------NEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVT   89 (388)
T ss_pred             CCCcChhhc-------------CcCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence            568888753             567779999999999999999999999999999763

>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional

Probab=97.41  E-value=0.00054  Score=72.29  Aligned_cols=41  Identities=34%  Similarity=0.546  Sum_probs=33.8

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|+++|++             ++|..+.+||+||.+|+.+++    +++++||++|.
T Consensus        50 ~tG~vL~~k-------------N~d~~~~pASlTKlmTalvvl----e~~l~ld~~v~   90 (306)
T PRK11669         50 NTNKVIYSS-------------NPDLVVPIASITKLMTAMVVL----DAKLPLDEKLK   90 (306)
T ss_pred             CCCcEEEeE-------------CcCCCcCchHHHHHHHHHHHH----HcCCCCCCEEE
Confidence            578888752             677889999999999999887    35889998874

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=97.32  E-value=0.00087  Score=68.96  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++...+++ .+..+...|++|+|.||+||++.++  +++.|+|||.+..-.
T Consensus       146 ~~~~~i~~-~l~~lH~~GI~HrDlkp~NILv~~~--~~v~LIDfg~~~~~~  193 (239)
T PRK01723        146 EQWQAIGQ-LIARFHDAGVYHADLNAHNILLDPD--GKFWLIDFDRGELRT  193 (239)
T ss_pred             HHHHHHHH-HHHHHHHCCCCCCCCCchhEEEcCC--CCEEEEECCCcccCC
Confidence            34445544 4778899999999999999999864  789999999887765

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.04  E-value=0.001  Score=66.73  Aligned_cols=54  Identities=24%  Similarity=0.439  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807           18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~   72 (729)
                      .++.+.+.+.+++ .++...|++|+|+||+||+|..++ ..++.||||+-+..-+.
T Consensus       119 ~~~~ll~~l~~~i-~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~~~  173 (206)
T PF06293_consen  119 QRRELLRALARLI-AKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFRPS  173 (206)
T ss_pred             hHHHHHHHHHHHH-HHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhceeCCC
Confidence            3566677666655 556999999999999999999762 23799999998876653

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=96.79  E-value=0.0015  Score=64.77  Aligned_cols=52  Identities=8%  Similarity=0.044  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++...+++...+++...|++|+|+.|-||++..   |++.|||||+.-.++-..
T Consensus       127 ~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~~---~~v~iIDF~qav~~~hp~  178 (197)
T cd05146         127 KNAYYQVLSMMKQLYKECNLVHADLSEYNMLWHD---GKVWFIDVSQSVEPTHPH  178 (197)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEC---CcEEEEECCCceeCCCCC
Confidence            4556667777766767899999999999999973   689999999999988544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=96.76  E-value=0.0036  Score=72.38  Aligned_cols=51  Identities=27%  Similarity=0.455  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..+++..+++. +..++..|++|+|+||+||++.   ++++.++|||+.+..+..
T Consensus       430 ~~~~~~~i~~~-L~~lH~~giiHrDlkp~NILl~---~~~~~liDFGla~~~~~~  480 (535)
T PRK09605        430 NPELVRKVGEI-VAKLHKAGIVHGDLTTSNFIVR---DDRLYLIDFGLGKYSDLI  480 (535)
T ss_pred             HHHHHHHHHHH-HHHHHhCCCccCCCChHHEEEE---CCcEEEEeCcccccCCch
Confidence            45566666654 4577899999999999999993   379999999999887653

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=96.69  E-value=0.0047  Score=64.53  Aligned_cols=48  Identities=10%  Similarity=0.192  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-----CCCCeEEEeccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-----PPHRPILLDFGLTK   68 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-----~~g~lvllDfG~v~   68 (729)
                      .++.+.+.+ ++.++...|++|+|.+|+||+++.+     +++++.||||+.+.
T Consensus       141 ~~ll~~la~-~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        141 RMLIKRVAT-MVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             HHHHHHHHH-HHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence            345555444 3456699999999999999999852     24689999999884

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=96.66  E-value=0.0021  Score=59.72  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHH---cCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYV---DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~---~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..+.+++. .+..   .|++|+|.||+|+++.+  ++++.++|||.+...++.
T Consensus        89 ~~~~~~~~~~l~-~lh~~~~~~i~H~Dl~~~Nil~~~--~~~~~l~Df~~~~~~~~~  142 (155)
T cd05120          89 EDIAEQLAELLA-KLHQLPLLVLCHGDLHPGNILVDD--GKILGIIDWEYAGYGPPA  142 (155)
T ss_pred             HHHHHHHHHHHH-HHhCCCceEEEecCCCcceEEEEC--CcEEEEEecccccCCChH
Confidence            444555554443 3333   48999999999999986  378999999999876654

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.59  E-value=0.0025  Score=61.68  Aligned_cols=45  Identities=27%  Similarity=0.471  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK   68 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~   68 (729)
                      -.+++.+-+...++ ...|++|+|+-+.||++..   ++++|||||+-.
T Consensus        95 ~~~~r~vG~~vg~l-H~~givHGDLTtsNiIl~~---~~i~~IDfGLg~  139 (204)
T COG3642          95 PDLLREVGRLVGKL-HKAGIVHGDLTTSNIILSG---GRIYFIDFGLGE  139 (204)
T ss_pred             hHHHHHHHHHHHHH-HhcCeecCCCccceEEEeC---CcEEEEECCccc
Confidence            45666666666554 8999999999999999975   579999999865

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=96.55  E-value=0.0045  Score=63.40  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=70.2

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK   80 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~   80 (729)
                      |+|+.+..+.-   ...+++++...+++.+-.-. +.|.+|||..+=||+|++|  |.+++|||=++...+.+.-+-+  
T Consensus       189 ieG~eL~~~r~---~~en~~~il~~il~~~~~~~-~~GiVHGDlSefNIlV~~d--g~~~vIDwPQ~v~~~hp~a~e~--  260 (304)
T COG0478         189 IEGVELYRLRL---DVENPDEILDKILEEVRKAY-RRGIVHGDLSEFNILVTED--GDIVVIDWPQAVPISHPDAEEL--  260 (304)
T ss_pred             cccceeecccC---cccCHHHHHHHHHHHHHHHH-HcCccccCCchheEEEecC--CCEEEEeCcccccCCCCCHHHH--
Confidence            56766665542   45778999999999887765 9999999999999999976  8999999999999888765554  


Q ss_pred             HHHHHHhCCHHHHHHHHHHcCC
Q 004807           81 MFFAAAEGDHVALLSAFAEMGL  102 (729)
Q Consensus        81 L~~a~~~~D~~~~~~~l~~lG~  102 (729)
                           +.+|.+-+++.+.+=..
T Consensus       261 -----l~RDv~nii~yFrrky~  277 (304)
T COG0478         261 -----LERDVENIIKYFRRKYG  277 (304)
T ss_pred             -----HHhHHHHHHHHHHHhcc
Confidence                 35777777777765543

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=96.51  E-value=0.0021  Score=65.05  Aligned_cols=54  Identities=22%  Similarity=0.302  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHH---HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIY---VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif---~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++.+++++.+.+.+-   ..++.|+|.||+||++.++ +++|++|||+.++.-++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~HgD~~~~Nil~~~~-~~~i~iID~e~a~~~~~~~  202 (239)
T PF01636_consen  146 EELEERLLQELEALLPKPLPPVLIHGDLHPGNILVDPS-DGRIGIIDFEDAGWGDPAY  202 (239)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCEEEE-SS-SGGGEEEESS-TTEEEE--GTT-EEEETHH
T ss_pred             HHHHHHHHHHHHhhhccCCCcEEEEeccccccceeeec-cceeEEEecccceECCHHH
Confidence            3455556666666554   5889999999999999943 4788999999987765543

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=96.33  E-value=0.0034  Score=66.02  Aligned_cols=45  Identities=29%  Similarity=0.562  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           25 EITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        25 ~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .+++.+++||+       .+|.+|.|.+|.|++|+++  |.|-|.|||+.+.+.
T Consensus       120 ~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~--G~lKlaDFGlAra~~  171 (323)
T KOG0594|consen  120 RLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSS--GVLKLADFGLARAFS  171 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCC--CcEeeeccchHHHhc
Confidence            45555555554       8999999999999999874  999999999988444

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=96.31  E-value=0.0045  Score=65.77  Aligned_cols=43  Identities=28%  Similarity=0.359  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK   68 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~   68 (729)
                      +..++. .+..++..|++|+|+||+||+++.+  |.+.|.|||+.+
T Consensus       107 ~~~i~~-~l~~lH~~~i~H~dl~p~NIll~~~--~~~~l~dfg~~~  149 (305)
T cd05609         107 FAETVL-ALEYLHNYGIVHRDLKPDNLLITSM--GHIKLTDFGLSK  149 (305)
T ss_pred             HHHHHH-HHHHHHHCCccccCCchHHEEECCC--CCEEEeeCCCcc
Confidence            333443 3467789999999999999999864  899999999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=96.26  E-value=0.0053  Score=60.00  Aligned_cols=54  Identities=28%  Similarity=0.461  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ..++..+++++ ..+...|++|+|+||+||++... ++++.|+|||+....+....
T Consensus        95 ~~~~~~l~~~l-~~lh~~~~~H~dl~~~ni~~~~~-~~~~~l~d~~~~~~~~~~~~  148 (215)
T cd00180          95 LRILLQILEGL-EYLHSNGIIHRDLKPENILLDSD-NGKVKLADFGLSKLLTSDKS  148 (215)
T ss_pred             HHHHHHHHHHH-HHHHhCCeeccCCCHhhEEEeCC-CCcEEEecCCceEEccCCcc
Confidence            34455555544 56778899999999999999872 37999999999998877654

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.25  E-value=0.0033  Score=68.30  Aligned_cols=80  Identities=24%  Similarity=0.301  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHH
Q 004807           23 VEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLS   95 (729)
Q Consensus        23 a~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~   95 (729)
                      .+.-++-++.|||       .+||||.|.+|-||||...  .-|-|=|||+++++.-.-  -|.+   .+ .-..-.+-+
T Consensus       108 se~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~--~~iKiaDFGLARev~Skp--PYTe---YV-STRWYRAPE  179 (538)
T KOG0661|consen  108 SESDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGN--DVIKIADFGLAREVRSKP--PYTE---YV-STRWYRAPE  179 (538)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCcccccCChhheEeccc--ceeEecccccccccccCC--Ccch---hh-hcccccchH
Confidence            4444555555554       8999999999999999842  367889999999885431  1111   11 222444567


Q ss_pred             HHHHcCCc-CCCCcHH
Q 004807           96 AFAEMGLR-LRLDVPE  110 (729)
Q Consensus        96 ~l~~lG~~-~~~~~~~  110 (729)
                      +|.+-|+- .+.|+=.
T Consensus       180 vLLrs~~Ys~pvD~wA  195 (538)
T KOG0661|consen  180 VLLRSGYYSSPVDMWA  195 (538)
T ss_pred             HhhhccccCCchHHHH
Confidence            77777764 3344433

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=96.25  E-value=0.0037  Score=63.68  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=26.0

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ...+.|+|.|||||++..+  + +++|||+.++.
T Consensus       152 ~~~~~HgD~~~~Nii~~~~--~-~~iIDwe~a~~  182 (226)
T TIGR02172       152 TSTCLHGDFQIGNLITSGK--G-TYWIDLGDFGY  182 (226)
T ss_pred             CCceEecCCCCCcEEEcCC--C-cEEEechhcCc
Confidence            4466899999999999864  4 99999998873

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.23  E-value=0.0034  Score=69.31  Aligned_cols=45  Identities=29%  Similarity=0.527  Sum_probs=38.5

Q ss_pred             HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHH
Q 004807           34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKM   81 (729)
Q Consensus        34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L   81 (729)
                      |..+|.+|+|.+|.||++-.   |+|-|||||+...+.+++..-+.+-
T Consensus       476 IH~~gIVHSDLKPANFLlVk---G~LKLIDFGIA~aI~~DTTsI~kds  520 (677)
T KOG0596|consen  476 IHQHGIVHSDLKPANFLLVK---GRLKLIDFGIANAIQPDTTSIVKDS  520 (677)
T ss_pred             HHHhceeecCCCcccEEEEe---eeEEeeeechhcccCccccceeecc
Confidence            45899999999999998764   8999999999999999887655443

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.23  E-value=0.0043  Score=66.81  Aligned_cols=66  Identities=26%  Similarity=0.445  Sum_probs=45.6

Q ss_pred             ceecCCHHhHhh-cCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCC-C--CCeEEEeccccc
Q 004807            3 GIRLNDCESLEA-FGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDP-P--HRPILLDFGLTK   68 (729)
Q Consensus         3 G~ki~d~~~l~~-~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~-~--g~lvllDfG~v~   68 (729)
                      |..+.|+..... .......++...+++.  ++.|...||+|+|.+|+||.+.... .  ..+.+||||+++
T Consensus       104 G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen  104 GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            444444433222 2345555555555554  7789999999999999999997642 1  359999999999

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=96.18  E-value=0.0051  Score=62.53  Aligned_cols=57  Identities=21%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           16 GVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        16 ~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..+...+...+.++.  +..+...|++|+|.+|.||++..+  +.+.|+|||.+..+....
T Consensus        94 ~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~  152 (253)
T cd05122          94 TLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSD--GEVKLIDFGLSAQLSDTK  152 (253)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccC--CeEEEeeccccccccccc
Confidence            344444443333333  467788999999999999999864  899999999998887654

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=96.15  E-value=0.0083  Score=67.23  Aligned_cols=55  Identities=24%  Similarity=0.404  Sum_probs=42.2

Q ss_pred             hcCCCHHHHHHHH---HHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           14 AFGVNKQKVVEEI---TRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        14 ~~~~d~~~la~~l---~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ..|+=.+.||+--   +.+..+.+..-||+|.|.+|.||||+.|  |.|-|-|||+|.-+
T Consensus       722 rmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrd--GHIKLTDFGLCTGf  779 (1034)
T KOG0608|consen  722 RMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRD--GHIKLTDFGLCTGF  779 (1034)
T ss_pred             HhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccC--Cceeeeeccccccc
Confidence            4566666655422   2233566778999999999999999986  89999999999755

>PRK09188 serine/threonine protein kinase; Provisional

Probab=96.05  E-value=0.0081  Score=65.51  Aligned_cols=50  Identities=18%  Similarity=0.300  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCC-CCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDP-HPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDP-HPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..+...++ --+..+...|++|+|. +|.||++..+  +++.|+|||+...+..
T Consensus       114 ~~~~~~i~-~aL~~lH~~gIiHrDL~KP~NILv~~~--~~ikLiDFGlA~~~~~  164 (365)
T PRK09188        114 PAWFRSAH-RALRDLHRAGITHNDLAKPQNWLMGPD--GEAAVIDFQLASVFRR  164 (365)
T ss_pred             HHHHHHHH-HHHHHHHHCCCeeCCCCCcceEEEcCC--CCEEEEECccceeccc
Confidence            34555554 3445678899999999 7999999654  7999999999999865

>PRK10271 thiK thiamine kinase; Provisional

Probab=95.89  E-value=0.031  Score=54.76  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .-..|.|+|||||+++.+   ++.+|||+..+.=++..
T Consensus        77 ~~p~H~D~~~~N~~~~~~---~~~lIDwe~a~~gDp~~  111 (188)
T PRK10271         77 LAPLHMDVHAGNLVHSAS---GLRLIDWEYAGDGDIAL  111 (188)
T ss_pred             eeeecCCCCCccEEEECC---CEEEEeCCcccCCCHHH
Confidence            456899999999999753   49999999999888754

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=95.87  E-value=0.011  Score=66.47  Aligned_cols=51  Identities=25%  Similarity=0.352  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..|+-++ .-+...|+||+|.||+||++.. ..|.|-|.|||.-..++.+
T Consensus       419 ~w~~~lv~Av-~~LH~~gvvhRDLkp~NIL~~~-~~g~lrltyFG~a~~~~~~  469 (612)
T KOG0603|consen  419 QWAAELVSAV-DYLHEQGVVHRDLKPGNILLDG-SAGHLRLTYFGFWSELERS  469 (612)
T ss_pred             HHHHHHHHHH-HHHHhcCeeecCCChhheeecC-CCCcEEEEEechhhhCchh
Confidence            3566665544 4568899999999999999962 2488999999999999988

>PRK11768 serine/threonine protein kinase; Provisional

Probab=95.86  E-value=0.0073  Score=65.17  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..|++|+|.||||+++. |   .+.+|||+.++.=+.
T Consensus       195 ~~~liHgD~h~~NvL~~-d---~~~iIDFDd~~~g~~  227 (325)
T PRK11768        195 RLLRLHGDCHPGNILWR-D---GPHFVDLDDARMGPA  227 (325)
T ss_pred             CccceecCCCchhcccc-C---CcEEEeCCCCCCCCH
Confidence            56899999999999993 3   589999999985443

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=95.76  E-value=0.013  Score=57.29  Aligned_cols=52  Identities=23%  Similarity=0.341  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++|-.++++.-..==....+|.|.+||||+++.+  |++-+-|||..|.|.+..
T Consensus       152 kIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~--GqVKiCDFGIsG~L~dSi  203 (282)
T KOG0984|consen  152 KIAVSVVHALEFLHSKLSVIHRDVKPSNILINYD--GQVKICDFGISGYLVDSI  203 (282)
T ss_pred             HhHHHHHHHHHHHHHHhhhhhccCCcceEEEccC--CcEEEcccccceeehhhh
Confidence            4555555555444446678999999999999986  899999999999987654

>PHA02882 putative serine/threonine kinase; Provisional

Probab=95.74  E-value=0.012  Score=62.29  Aligned_cols=48  Identities=21%  Similarity=0.519  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. ..++..|++|+|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       130 ~i~~qi~~~l-~~lH~~~iiHrDiKp~Nill~~~--~~~~l~DFGla~~~~  177 (294)
T PHA02882        130 NIMKDMLTTL-EYIHEHGISHGDIKPENIMVDGN--NRGYIIDYGIASHFI  177 (294)
T ss_pred             HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CcEEEEEcCCceeec
Confidence            3455555544 45678999999999999999754  789999999988764

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=95.72  E-value=0.0088  Score=63.06  Aligned_cols=49  Identities=24%  Similarity=0.436  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHH-------cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYV-------DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~-------~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +.+.-++.|+.||++       .+.+|.|.+|+|+++..|  ..+.+.|||+.+.+++
T Consensus       122 L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~--c~lKI~DFGLAR~~~~  177 (359)
T KOG0660|consen  122 LTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNAD--CDLKICDFGLARYLDK  177 (359)
T ss_pred             ccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccC--CCEEeccccceeeccc
Confidence            677778899999885       899999999999999876  7899999999999964

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.68  E-value=0.022  Score=57.75  Aligned_cols=69  Identities=19%  Similarity=0.324  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhC
Q 004807           18 NKQKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEG   88 (729)
Q Consensus        18 d~~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~   88 (729)
                      .+..+...=+..|+.||+       ..|..|.|.+|||++|..+  --+-+-|||+.+.-+.+.+..+..=+.--.-+
T Consensus       149 SPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSN--CvLKICDFGLARvee~d~~~hMTqEVVTQYYR  224 (449)
T KOG0664|consen  149 SPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSN--CILKICDFGLARTWDQRDRLNMTHEVVTQYYR  224 (449)
T ss_pred             cCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccC--ceEEecccccccccchhhhhhhHHHHHHHHhc
Confidence            344445555677888887       5799999999999999763  56778999999999999998887554443333

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=95.68  E-value=0.0068  Score=62.08  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=28.2

Q ss_pred             HcCccccCCCCCCeEEecCCCCCe-EEEecccccccCHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSSSM   74 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~~~   74 (729)
                      ..+++|+|.||+|++|..   +++ ++|||+.+..=++..
T Consensus       163 ~~~l~HGD~~~~Nvlv~~---~~i~giIDw~~a~~gDp~~  199 (235)
T cd05155         163 PPVWFHGDLAPGNLLVQD---GRLSAVIDFGCLGVGDPAC  199 (235)
T ss_pred             CceEEeCCCCCCcEEEEC---CCEEEEEeCcccCcCChHH
Confidence            456899999999999974   465 699999876555443

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=95.63  E-value=0.014  Score=60.15  Aligned_cols=50  Identities=22%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. ..+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       107 ~~~~~~l~~~l-~~lH~~~i~H~dl~p~nilv~~~--~~~~l~dfg~~~~~~~  156 (263)
T cd06625         107 RKYTRQILEGV-EYLHSNMIVHRDIKGANILRDSA--GNVKLGDFGASKRLQT  156 (263)
T ss_pred             HHHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEeecccceeccc
Confidence            34455555544 45678999999999999999764  8999999999876643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=95.63  E-value=0.031  Score=58.76  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=31.7

Q ss_pred             HcCccccCCCCCCeEEecCCCCCe-EEEecccccccCHHHHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSSSMKQA   77 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~~~r~~   77 (729)
                      ...++|+|.||+||+|.++  +++ ++|||+++..=++..=-+
T Consensus       184 ~~~lvHGD~~~~Nilv~~~--~~~~gviDWe~a~iGDPa~Dla  224 (276)
T cd05152         184 HTVLVHGDLHPGHILIDED--ARVTGLIDWTEAKVGDPARDFV  224 (276)
T ss_pred             CCeeEeCCCCCCcEEEeCC--CCEEEEECcHhcccCCHHHHHH
Confidence            3468999999999999853  675 699999998877765333

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=95.51  E-value=0.01  Score=59.58  Aligned_cols=39  Identities=28%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ...+.|+|.|||||++.++.++.+.||||+.++.=++.+
T Consensus       173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~g~~~~  211 (223)
T cd05154         173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATLGDPLA  211 (223)
T ss_pred             CcEEEECCCCcccEEEcCCCCcEEEEEeccccccCChHH
Confidence            578899999999999986312568899999998665543

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=95.48  E-value=0.011  Score=64.87  Aligned_cols=52  Identities=29%  Similarity=0.423  Sum_probs=43.2

Q ss_pred             HHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH
Q 004807           26 ITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL   78 (729)
Q Consensus        26 l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l   78 (729)
                      .+++|.+|+|       .+|++|||.+|.||||.+. ..-|-|-|||.....++....-|
T Consensus       537 aVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~-k~iLKLCDfGSA~~~~eneitPY  595 (752)
T KOG0670|consen  537 AVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNES-KNILKLCDFGSASFASENEITPY  595 (752)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeeecccCccceEeccC-cceeeeccCccccccccccccHH
Confidence            4678888888       7999999999999999863 34567899999999888776655

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=95.45  E-value=0.032  Score=57.30  Aligned_cols=36  Identities=17%  Similarity=0.082  Sum_probs=28.3

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .-.+.|+|.|||||++..+  +.+++|||+.++-=++.
T Consensus       162 ~~~l~HgD~~~~Nil~~~~--~~~~iIDwe~a~~gdp~  197 (244)
T cd05150         162 DLVVTHGDACLPNIIVDPG--KFSGFIDLGRLGVADRY  197 (244)
T ss_pred             ceEEECCCCCCccEEEeCC--cEEEEEEccccccccHH
Confidence            4568999999999999753  44679999988754443

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=95.41  E-value=0.017  Score=63.14  Aligned_cols=48  Identities=31%  Similarity=0.436  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||++..+...
T Consensus       107 ~~qi~~~-L~~lH~~givHrDLkp~NIli~~~--~~vkL~DfG~~~~~~~~  154 (360)
T cd05627         107 IAETVLA-IDAIHQLGFIHRDIKPDNLLLDAK--GHVKLSDFGLCTGLKKA  154 (360)
T ss_pred             HHHHHHH-HHHHHHCCeEccCCCHHHEEECCC--CCEEEeeccCCcccccc
Confidence            3344433 456679999999999999999764  89999999998877544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=95.41  E-value=0.014  Score=62.75  Aligned_cols=46  Identities=28%  Similarity=0.353  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++. ..+...|++|+|.+|.||++..+  |.+.|.|||+...+
T Consensus       101 ~~~qi~~~L-~~lH~~giiHrDlkp~Nili~~~--~~~kl~DfG~a~~~  146 (325)
T cd05602         101 YAAEIASAL-GYLHSLNIVYRDLKPENILLDSQ--GHIVLTDFGLCKEN  146 (325)
T ss_pred             HHHHHHHHH-HHHHHCCeEecCCCHHHeEECCC--CCEEEccCCCCccc
Confidence            455555554 45678999999999999999764  89999999988653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=95.40  E-value=0.013  Score=60.78  Aligned_cols=52  Identities=29%  Similarity=0.381  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++.++. .+...|++|+|++|.||++..+  |++.|+|||+...+....
T Consensus       105 ~~i~~ql~~~l~-~Lh~~~~~H~dl~~~ni~i~~~--~~~~l~df~~~~~~~~~~  156 (280)
T cd05581         105 RFYAAEILLALE-YLHSKGIIHRDLKPENILLDKD--MHIKITDFGTAKVLDPNS  156 (280)
T ss_pred             HHHHHHHHHHHH-HHHHCCeeecCCCHHHeEECCC--CCEEecCCccccccCCcc
Confidence            445555555553 5679999999999999999865  899999999998887654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>PRK05231 homoserine kinase; Provisional

Probab=95.36  E-value=0.019  Score=61.69  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=28.6

Q ss_pred             HHcCccccCCCCCCeEEecCCCCCe-EEEecccccccCH
Q 004807           35 YVDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSS   72 (729)
Q Consensus        35 f~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~   72 (729)
                      +..|+.|+|.||+|+++..   +++ ++|||+.+..=..
T Consensus       185 lp~~liHgD~~~~Nil~~~---~~~~~iIDf~~~~~~~~  220 (319)
T PRK05231        185 LPRGVIHADLFRDNVLFEG---DRLSGFIDFYFACNDKL  220 (319)
T ss_pred             CCcccCCCCCCCCcEEEEC---CceEEEEecccccCCch
Confidence            4569999999999999974   355 8999999876544

>PRK10345 hypothetical protein; Provisional

Probab=95.31  E-value=0.034  Score=55.94  Aligned_cols=49  Identities=10%  Similarity=0.143  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l   70 (729)
                      ....+++.+.+-++..|.+|.|.+|.||+++..  ++++++|+|||-...+
T Consensus       109 ~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~~  159 (210)
T PRK10345        109 QLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGESTF  159 (210)
T ss_pred             HHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcce
Confidence            456777777888899999999999999999853  2348999994444444

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=95.29  E-value=0.019  Score=61.71  Aligned_cols=46  Identities=28%  Similarity=0.349  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+  |.+.|.|||++..
T Consensus       100 ~~~~qi~~a-l~~lH~~givH~Dlkp~NIll~~~--~~~kL~DfG~~~~  145 (325)
T cd05604         100 FYAAEIASA-LGYLHSINIVYRDLKPENILLDSQ--GHVVLTDFGLCKE  145 (325)
T ss_pred             HHHHHHHHH-HHHHHHCCeeecCCCHHHeEECCC--CCEEEeecCCccc
Confidence            345555554 355678999999999999999865  8999999999765

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=95.29  E-value=0.021  Score=58.40  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +.-+...|++|+|.+|+||++..+  +.+.|.|||+.....
T Consensus       106 l~~lH~~~~~H~dl~p~nili~~~--~~~~l~d~g~~~~~~  144 (250)
T cd05085         106 MAYLESKNCIHRDLAARNCLVGEN--NVLKISDFGMSRQED  144 (250)
T ss_pred             HHHHHhCCeeecccChheEEEcCC--CeEEECCCccceecc
Confidence            345568899999999999999764  789999999876543

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=95.27  E-value=0.023  Score=58.15  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus        99 ~~~qi~~~L-~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~  145 (252)
T cd05084          99 MVENAAAGM-EYLESKHCIHRDLAARNCLVTEK--NVLKISDFGMSREEE  145 (252)
T ss_pred             HHHHHHHHH-HHHHhCCccccccchheEEEcCC--CcEEECccccCcccc
Confidence            344444433 34568899999999999999764  789999999987765

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=95.24  E-value=0.015  Score=62.51  Aligned_cols=29  Identities=31%  Similarity=0.517  Sum_probs=25.4

Q ss_pred             ccccCCCCCCeEEecCCCCC-eEEEecccccc
Q 004807           39 FFNGDPHPGNFLVSKDPPHR-PILLDFGLTKK   69 (729)
Q Consensus        39 ffHaDPHPGNilv~~d~~g~-lvllDfG~v~~   69 (729)
                      .+|+|+||+|++++.+  .. .++||||-++.
T Consensus       199 iIH~D~~~~NVl~d~~--~~~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDDD--TDVSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcCC--CCeeeEEEcccccc
Confidence            8999999999999865  33 89999999875

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=95.22  E-value=0.02  Score=61.56  Aligned_cols=46  Identities=28%  Similarity=0.377  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  |++.|.|||+...+
T Consensus       110 ~~~qi~~~-l~~lH~~~ivHrDlkp~Nili~~~--~~~kl~DfG~~~~~  155 (332)
T cd05614         110 YSGEIILA-LEHLHKLGIVYRDIKLENILLDSE--GHVVLTDFGLSKEF  155 (332)
T ss_pred             HHHHHHHH-HHHHHHCCcEecCCCHHHeEECCC--CCEEEeeCcCCccc
Confidence            34444444 456678999999999999999865  89999999987654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=95.12  E-value=0.013  Score=62.19  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=27.9

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++.|+|.||+|++++.+  +.+++|||+.+..=+
T Consensus       174 ~~~l~HgD~~~~Nil~~~~--~~~~iIDfe~a~~g~  207 (296)
T cd05153         174 PRGVIHADLFRDNVLFDGD--ELSGVIDFYFACTDA  207 (296)
T ss_pred             CCcCCccCcCcccEEEeCC--ceEEEeehhhhcCch
Confidence            4689999999999999863  445899999987643

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=95.11  E-value=0.027  Score=60.52  Aligned_cols=47  Identities=28%  Similarity=0.489  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ ++.+...|++|+|.+|.||+++.+  |++.|.|||+...+..
T Consensus       108 ~~qi~~a-L~~lH~~~i~H~Dlkp~NIll~~~--~~~kL~Dfg~a~~~~~  154 (330)
T cd05601         108 LAELVLA-IHSVHQMGYVHRDIKPENVLIDRT--GHIKLADFGSAARLTA  154 (330)
T ss_pred             HHHHHHH-HHHHHHCCeEcccCchHheEECCC--CCEEeccCCCCeECCC
Confidence            3344443 356778999999999999999864  8999999999887754

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=95.10  E-value=0.024  Score=61.07  Aligned_cols=48  Identities=29%  Similarity=0.486  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+..
T Consensus       106 ~~~qi~~~-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kL~Dfg~a~~~~~  153 (333)
T cd05600         106 YMAEMFEA-VDALHELGYIHRDLKPENFLIDAS--GHIKLTDFGLSKGIVT  153 (333)
T ss_pred             HHHHHHHH-HHHHHHCCccccCCCHHHEEECCC--CCEEEEeCcCCccccc
Confidence            34444443 346778999999999999999764  8999999999887654

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=95.05  E-value=0.024  Score=60.83  Aligned_cols=46  Identities=28%  Similarity=0.317  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +.+.|.|||++...
T Consensus       101 ~~~ql~~~L-~~lH~~~ivH~dlkp~NIli~~~--~~~kL~DfG~~~~~  146 (320)
T cd05590         101 YAAEITSAL-MFLHDKGIIYRDLKLDNVLLDHE--GHCKLADFGMCKEG  146 (320)
T ss_pred             HHHHHHHHH-HHHHHCCeEeCCCCHHHeEECCC--CcEEEeeCCCCeec
Confidence            344444433 45678999999999999999865  89999999998753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=95.03  E-value=0.031  Score=57.70  Aligned_cols=48  Identities=23%  Similarity=0.405  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +++..++++.. -+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus        99 ~~~~~i~~~l~-~lH~~~i~H~dlkp~nil~~~~--~~~kl~dfg~~~~~~  146 (257)
T cd05115          99 ELMHQVSMGMK-YLEGKNFVHRDLAARNVLLVNQ--HYAKISDFGLSKALG  146 (257)
T ss_pred             HHHHHHHHHHH-HHHhcCeeecccchheEEEcCC--CcEEeccCCcccccc
Confidence            44555555553 4578999999999999999764  789999999987654

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=95.02  E-value=0.024  Score=62.74  Aligned_cols=51  Identities=35%  Similarity=0.462  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ   76 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~   76 (729)
                      |..|+++ ++-+...|.+|.|.+|-|||++.|  ++|-+=|||..+.|++....
T Consensus       180 AAeIldA-leylH~~GIIHRDlKPENILLd~d--mhikITDFGsAK~l~~~~~~  230 (604)
T KOG0592|consen  180 AAEILDA-LEYLHSNGIIHRDLKPENILLDKD--GHIKITDFGSAKILSPSQKS  230 (604)
T ss_pred             HHHHHHH-HHHHHhcCceeccCChhheeEcCC--CcEEEeeccccccCChhhcc
Confidence            3344443 345579999999999999999875  99999999999999998765

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=95.01  E-value=0.024  Score=61.38  Aligned_cols=48  Identities=33%  Similarity=0.517  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||++..+..
T Consensus       106 i~~qi~~a-L~~LH~~giiH~Dlkp~NIll~~~--~~~kL~Dfg~~~~~~~  153 (350)
T cd05573         106 YIAELVLA-LDSVHKLGFIHRDIKPDNILIDAD--GHIKLADFGLCKKMNK  153 (350)
T ss_pred             HHHHHHHH-HHHHHHCCeeccCCCHHHeEECCC--CCEEeecCCCCccCcc
Confidence            44445544 456678999999999999999865  8999999999887664

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=95.01  E-value=0.035  Score=56.83  Aligned_cols=51  Identities=20%  Similarity=0.406  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..++++. .-+...|++|+|.+|+||++..+  +.+.|.|||+...++...
T Consensus       103 ~~~~~l~~~l-~~lh~~~i~H~dl~~~ni~~~~~--~~~~l~dfg~~~~~~~~~  153 (256)
T cd06612         103 AILYQTLKGL-EYLHSNKKIHRDIKAGNILLNEE--GQAKLADFGVSGQLTDTM  153 (256)
T ss_pred             HHHHHHHHHH-HHHHHCCcccCCCCcceEEECCC--CcEEEcccccchhcccCc
Confidence            3444555444 34467899999999999999865  789999999998887543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=95.01  E-value=0.025  Score=60.74  Aligned_cols=46  Identities=28%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  |.+.|.|||++...
T Consensus       101 ~~~qi~~~-l~~lH~~givH~dikp~NIll~~~--~~~kl~Dfg~~~~~  146 (323)
T cd05575         101 YAAEIASA-LGYLHSLNIIYRDLKPENILLDSQ--GHVVLTDFGLCKEG  146 (323)
T ss_pred             HHHHHHHH-HHHHHHCCeEeCCCCHHHeEECCC--CcEEEeccCCCccc
Confidence            44555554 355678999999999999999765  89999999987653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=94.99  E-value=0.028  Score=60.77  Aligned_cols=49  Identities=27%  Similarity=0.460  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. .-+...|++|+|.+|.||++..+  +.+.|.|||+...++.
T Consensus       122 ~i~~qi~~aL-~~LH~~~ivHrdikp~Nil~~~~--~~~kl~Dfg~~~~~~~  170 (343)
T cd07878         122 FLIYQLLRGL-KYIHSAGIIHRDLKPSNVAVNED--CELRILDFGLARQADD  170 (343)
T ss_pred             HHHHHHHHHH-HHHHHCCeecccCChhhEEECCC--CCEEEcCCccceecCC
Confidence            3444555544 33578999999999999999865  8999999999887654

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=94.98  E-value=0.029  Score=57.62  Aligned_cols=48  Identities=23%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..+++++ ..+...|+.|+|.+|+||+++.+  +.+.|.|||......
T Consensus       104 ~~~~qi~~al-~~lH~~~~~H~dl~p~nili~~~--~~~kl~Dfg~~~~~~  151 (254)
T cd05083         104 QFSLDVAEGM-EYLESKKLVHRDLAARNILVSED--GVAKVSDFGLARVGS  151 (254)
T ss_pred             HHHHHHHHHH-HHHHhCCeeccccCcceEEEcCC--CcEEECCCccceecc
Confidence            3455666655 45678999999999999999864  899999999887543

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>PHA03207 serine/threonine kinase US3; Provisional

Probab=94.97  E-value=0.023  Score=62.87  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. ..+...|++|+|.+|.||+++.+  +++.|+|||+...+..
T Consensus       188 ~~i~~ql~~aL-~~LH~~givHrDlkp~Nill~~~--~~~~l~DfG~a~~~~~  237 (392)
T PHA03207        188 ITIQRRLLEAL-AYLHGRGIIHRDVKTENIFLDEP--ENAVLGDFGAACKLDA  237 (392)
T ss_pred             HHHHHHHHHHH-HHHHHCCccccCCCHHHEEEcCC--CCEEEccCccccccCc
Confidence            34555555553 55688999999999999999864  8999999999877654

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=94.92  E-value=0.033  Score=56.75  Aligned_cols=37  Identities=30%  Similarity=0.482  Sum_probs=33.4

Q ss_pred             HHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           35 YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        35 f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      =.||.+|.|.+|.||+++.  .|.|-|-|||+.|++.+.
T Consensus       209 eKH~viHRDvKPSNILlDe--~GniKlCDFGIsGrlvdS  245 (391)
T KOG0983|consen  209 EKHGVIHRDVKPSNILLDE--RGNIKLCDFGISGRLVDS  245 (391)
T ss_pred             HhcceeecccCccceEEcc--CCCEEeecccccceeecc
Confidence            3899999999999999976  489999999999998764

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=94.90  E-value=0.024  Score=59.65  Aligned_cols=48  Identities=23%  Similarity=0.326  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++.+. .-+...|++|+|.+|.||+++.+  +++.|.|||++....
T Consensus       107 ~~~~qi~~aL-~~LH~~~ivH~dlkp~Nil~~~~--~~~kl~DfG~~~~~~  154 (288)
T cd07871         107 IFMFQLLRGL-SYCHKRKILHRDLKPQNLLINEK--GELKLADFGLARAKS  154 (288)
T ss_pred             HHHHHHHHHH-HHHHhCCcccCCCCHHHEEECCC--CCEEECcCcceeecc
Confidence            3445555544 45578999999999999999864  899999999987643

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=94.89  E-value=0.022  Score=62.97  Aligned_cols=43  Identities=28%  Similarity=0.452  Sum_probs=38.7

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ..-|..+|++|.|.+|-|+||+..  |.|=|=|||++.-+....+
T Consensus       254 I~~iH~~gyIHRDIKPdNlLiD~~--GHiKLSDFGLs~gl~~~~~  296 (550)
T KOG0605|consen  254 IESIHQLGYIHRDIKPDNLLIDAK--GHIKLSDFGLSTGLDKKHR  296 (550)
T ss_pred             HHHHHHcCcccccCChhheeecCC--CCEeeccccccchhhhhhh
Confidence            466789999999999999999875  9999999999988888777

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=94.88  E-value=0.032  Score=60.13  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  +++.|.|||+.+.+..
T Consensus       179 ~~~qi~~aL-~~LH~~~ivHrDiKp~Nil~~~~--~~~kl~DfG~a~~~~~  226 (338)
T cd05102         179 YSFQVARGM-EFLASRKCIHRDLAARNILLSEN--NVVKICDFGLARDIYK  226 (338)
T ss_pred             HHHHHHHHH-HHHHHCCEECCCCccceEEEcCC--CcEEEeeccccccccc
Confidence            444555544 45578999999999999999864  8999999999887643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PHA03212 serine/threonine kinase US3; Provisional

Probab=94.88  E-value=0.032  Score=61.85  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++++. .-+...|++|+|.+|.||++..+  |.+.|.|||+...
T Consensus       186 ~i~~qi~~aL-~ylH~~~IvHrDiKP~NIll~~~--~~vkL~DFG~a~~  231 (391)
T PHA03212        186 AIERSVLRAI-QYLHENRIIHRDIKAENIFINHP--GDVCLGDFGAACF  231 (391)
T ss_pred             HHHHHHHHHH-HHHHhCCcccCCCChHhEEEcCC--CCEEEEeCCcccc
Confidence            3444555443 45578999999999999999864  8999999998754

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=94.88  E-value=0.024  Score=60.69  Aligned_cols=45  Identities=22%  Similarity=0.349  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...
T Consensus       101 ~~~qi~~~-l~~lH~~~ivHrDlkp~Nil~~~~--~~~kl~Dfg~~~~  145 (316)
T cd05620         101 YAAEIVCG-LQFLHSKGIIYRDLKLDNVMLDRD--GHIKIADFGMCKE  145 (316)
T ss_pred             HHHHHHHH-HHHHHHCCeEecCCCHHHeEECCC--CCEEeCccCCCee
Confidence            34455554 455678999999999999999864  8999999998764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=94.88  E-value=0.032  Score=58.30  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. ..+...|++|+|.+|.||++..+  +++.|.|||+.+.+..
T Consensus       128 ~~~~ql~~aL-~~lH~~gi~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~  176 (283)
T cd05091         128 HIVTQIAAGM-EFLSSHHVVHKDLATRNVLVFDK--LNVKISDLGLFREVYA  176 (283)
T ss_pred             HHHHHHHHHH-HHHHHcCccccccchhheEecCC--CceEeccccccccccc
Confidence            3445555554 56679999999999999999864  7899999999887754

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=94.88  E-value=0.026  Score=58.14  Aligned_cols=50  Identities=22%  Similarity=0.386  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..+++++ ..+.. .|++|+|.+|.||+++.+  +.+.|.|||....+....
T Consensus       105 ~~~~l~~~l-~~lH~~~~i~H~dl~~~ni~~~~~--~~~~l~d~g~~~~~~~~~  155 (265)
T cd06605         105 IAVAVLKGL-TYLHEKHKIIHRDVKPSNILVNSR--GQIKLCDFGVSGQLVNSL  155 (265)
T ss_pred             HHHHHHHHH-HHHcCCCCeecCCCCHHHEEECCC--CCEEEeecccchhhHHHH
Confidence            444445444 34556 899999999999999864  899999999988775543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=94.79  E-value=0.035  Score=57.00  Aligned_cols=48  Identities=23%  Similarity=0.371  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       102 ~~~qi~~~L-~~lH~~~i~H~di~p~nil~~~~--~~~kl~dfg~~~~~~~  149 (257)
T cd05040         102 YAVQIANGM-RYLESKRFIHRDLAARNILLASD--DKVKIGDFGLMRALPQ  149 (257)
T ss_pred             HHHHHHHHH-HHHHhCCccccccCcccEEEecC--CEEEeccccccccccc
Confidence            344455444 45578899999999999999875  8999999999988754

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=94.79  E-value=0.035  Score=57.54  Aligned_cols=48  Identities=23%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.|+++..+  +++.|.|||+...+..
T Consensus       111 i~~~i~~~l-~~lH~~~i~h~dlkp~nili~~~--~~~~l~dfg~~~~~~~  158 (267)
T cd05066         111 MLRGIASGM-KYLSDMGYVHRDLAARNILVNSN--LVCKVSDFGLSRVLED  158 (267)
T ss_pred             HHHHHHHHH-HHHHHCCEeehhhchhcEEECCC--CeEEeCCCCccccccc
Confidence            334444443 45578899999999999999764  7899999999987754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=94.78  E-value=0.038  Score=59.58  Aligned_cols=47  Identities=28%  Similarity=0.386  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ ++.+...|++|+|.+|.||++..+  |.+.|.|||++..+..
T Consensus       108 ~~qi~~~-L~~lH~~~iiHrDlkp~Nill~~~--~~~kl~DfG~a~~~~~  154 (331)
T cd05624         108 IAEMVLA-IHSIHQLHYVHRDIKPDNVLLDMN--GHIRLADFGSCLKMNQ  154 (331)
T ss_pred             HHHHHHH-HHHHHHCCeeeccCchHHEEEcCC--CCEEEEeccceeeccC
Confidence            3344433 345678999999999999999764  8999999999877654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=94.78  E-value=0.026  Score=61.45  Aligned_cols=49  Identities=20%  Similarity=0.369  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++++. .-+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       171 ~~i~~qi~~aL-~~LH~~~ivHrDlkp~NIll~~~--~~~kL~DfG~~~~~~  219 (353)
T PLN00034        171 ADVARQILSGI-AYLHRRHIVHRDIKPSNLLINSA--KNVKIADFGVSRILA  219 (353)
T ss_pred             HHHHHHHHHHH-HHHHHCCEeecCCCHHHEEEcCC--CCEEEcccccceecc
Confidence            34566666653 55678999999999999999865  899999999987664

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=94.76  E-value=0.052  Score=54.66  Aligned_cols=54  Identities=19%  Similarity=0.321  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHHHHH--HHHHHHcC--ccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           17 VNKQKVVEEITRAY--AHQIYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        17 ~d~~~la~~l~~~~--~~qif~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++-.++......++  ++++....  +-|.|.+|+||++..+  +.+|+.|||.+...+-
T Consensus       124 ~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~--~~~vl~D~GS~~~a~i  181 (302)
T KOG2345|consen  124 VSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDS--GLPVLMDLGSATQAPI  181 (302)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCC--CceEEEeccCccccce
Confidence            44444444433333  77888888  9999999999999864  8999999999987654

>PHA03210 serine/threonine kinase US3; Provisional

Probab=94.76  E-value=0.028  Score=64.52  Aligned_cols=49  Identities=18%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+ +.-+...|++|+|.+|.||++..+  |++.|.|||+...+..
T Consensus       271 ~i~~ql~~a-L~yLH~~gIiHrDLKP~NILl~~~--~~vkL~DFGla~~~~~  319 (501)
T PHA03210        271 AIMKQLLCA-VEYIHDKKLIHRDIKLENIFLNCD--GKIVLGDFGTAMPFEK  319 (501)
T ss_pred             HHHHHHHHH-HHHHHhCCeecCCCCHHHEEECCC--CCEEEEeCCCceecCc
Confidence            345555544 345578999999999999999865  8999999999987754

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=94.75  E-value=0.031  Score=60.59  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+...++.
T Consensus       136 ~~~qi~~a-L~~LH~~~ivHrDLkp~NILl~~~--~~ikL~DFG~a~~~~~  183 (340)
T PTZ00426        136 YAAQIVLI-FEYLQSLNIVYRDLKPENLLLDKD--GFIKMTDFGFAKVVDT  183 (340)
T ss_pred             HHHHHHHH-HHHHHHCCeEccCCCHHHEEECCC--CCEEEecCCCCeecCC
Confidence            44444443 445678999999999999999764  8999999999987754

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=94.74  E-value=0.052  Score=62.02  Aligned_cols=61  Identities=21%  Similarity=0.475  Sum_probs=48.1

Q ss_pred             hcCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeE--EEecccccccCHHH
Q 004807           14 AFGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPI--LLDFGLTKKLSSSM   74 (729)
Q Consensus        14 ~~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lv--llDfG~v~~l~~~~   74 (729)
                      +.|.--.++...|.++.  ++-+.++|.+|.|.+||||+.....+|+.+  |.|||+.+.+++..
T Consensus       114 ~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s  178 (732)
T KOG4250|consen  114 AYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS  178 (732)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC
Confidence            34555566666666655  556679999999999999998876568865  69999999999987

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=94.74  E-value=0.037  Score=60.19  Aligned_cols=48  Identities=23%  Similarity=0.448  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+.+....
T Consensus       124 ~~~qi~~a-L~~LH~~givHrDikp~Nill~~~--~~~kl~Dfg~~~~~~~  171 (355)
T cd07874         124 LLYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAGT  171 (355)
T ss_pred             HHHHHHHH-HHHHHhCCcccCCCChHHEEECCC--CCEEEeeCcccccCCC
Confidence            34444443 345678999999999999999865  8999999999976543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=94.73  E-value=0.033  Score=61.21  Aligned_cols=39  Identities=31%  Similarity=0.520  Sum_probs=33.2

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..+...|++|+|.+|.||+++.+  +.+.|.|||++..+.
T Consensus       114 l~~lH~~~ivHrDlkp~Nill~~~--~~ikL~DFG~a~~~~  152 (376)
T cd05598         114 IESVHKMGFIHRDIKPDNILIDRD--GHIKLTDFGLCTGFR  152 (376)
T ss_pred             HHHHHHCCeEeCCCCHHHEEECCC--CCEEEEeCCCCcccc
Confidence            345678999999999999999865  899999999986553

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=94.73  E-value=0.034  Score=59.72  Aligned_cols=45  Identities=27%  Similarity=0.270  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++.+ ++-+...|++|+|.+|.||+++.+  +.+.|.|||+.+.
T Consensus       100 ~~~qi~~~-L~~lH~~~ivHrDlkp~NIll~~~--~~~kl~DfG~a~~  144 (323)
T cd05571         100 YGAEIVSA-LGYLHSCDVVYRDLKLENLMLDKD--GHIKITDFGLCKE  144 (323)
T ss_pred             HHHHHHHH-HHHHHhCCeEeCCCCHHHEEECCC--CCEEEeeCCCCcc
Confidence            33444443 355678999999999999999864  8999999998764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=94.72  E-value=0.035  Score=56.57  Aligned_cols=52  Identities=27%  Similarity=0.359  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      .++..++.+. ..+...|++|+|.+|+||++..+  +.+.|.|||....+.....
T Consensus       103 ~~~~~i~~~l-~~lH~~~i~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~  154 (254)
T cd06627         103 VYVYQVLQGL-AYLHEQGVIHRDIKAANILTTKD--GVVKLADFGVATKLNDVSK  154 (254)
T ss_pred             HHHHHHHHHH-HHHhhCCcccCCCCHHHEEECCC--CCEEEeccccceecCCCcc
Confidence            4455555555 45679999999999999999864  8999999999998876544

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=94.72  E-value=0.033  Score=60.86  Aligned_cols=43  Identities=30%  Similarity=0.456  Sum_probs=36.1

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      +.-+...|++|+|.+|.||+++.+  |.+.|.|||+++.+....+
T Consensus       114 L~~lH~~givHrDlKp~NILi~~~--~~vkL~DFGla~~~~~~~~  156 (363)
T cd05628         114 IDSIHQLGFIHRDIKPDNLLLDSK--GHVKLSDFGLCTGLKKAHR  156 (363)
T ss_pred             HHHHHhCCeEecCCCHHHeEECCC--CCEEEeeccCccccccccc
Confidence            345678999999999999999764  8999999999988765443

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=94.71  E-value=0.029  Score=58.92  Aligned_cols=48  Identities=25%  Similarity=0.371  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+...++
T Consensus       114 ~i~~qi~~aL-~~lH~~~iiH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~  161 (290)
T cd07862         114 DMMFQLLRGL-DFLHSHRVVHRDLKPQNILVTSS--GQIKLADFGLARIYS  161 (290)
T ss_pred             HHHHHHHHHH-HHHHHCCeeeCCCCHHHEEEcCC--CCEEEccccceEecc
Confidence            3444555443 45578999999999999999865  899999999987654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=94.71  E-value=0.04  Score=56.99  Aligned_cols=50  Identities=18%  Similarity=0.296  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. ..+...|++|+|.+|.||++..+  +++.|.|||....++.
T Consensus       105 ~~~~~~l~~aL-~~lH~~~i~H~dl~p~Nill~~~--~~~~L~dfg~~~~~~~  154 (262)
T cd05071         105 VDMAAQIASGM-AYVERMNYVHRDLRAANILVGEN--LVCKVADFGLARLIED  154 (262)
T ss_pred             HHHHHHHHHHH-HHHHHCCccccccCcccEEEcCC--CcEEeccCCceeeccc
Confidence            33455555555 44789999999999999999864  7899999999987764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=94.71  E-value=0.03  Score=59.98  Aligned_cols=45  Identities=27%  Similarity=0.383  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+  |++.|.|||++..
T Consensus       101 ~~~qi~~~-L~~lH~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~~~~  145 (321)
T cd05603         101 YAAEVASA-IGYLHSLNIIYRDLKPENILLDSQ--GHVVLTDFGLCKE  145 (321)
T ss_pred             HHHHHHHH-HHHHHHCCeEeccCCHHHeEECCC--CCEEEccCCCCcc
Confidence            44455544 344568999999999999999865  8999999998865

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=94.71  E-value=0.021  Score=60.38  Aligned_cols=49  Identities=24%  Similarity=0.398  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+ ++.+...|++|+|.+|.||+++.+  +.+.|.|||+...+..+
T Consensus       121 ~~~ql~~~-l~~lH~~givH~dl~p~Nilv~~~--~~~~l~dfg~~~~~~~~  169 (292)
T cd06657         121 VCLAVLKA-LSVLHAQGVIHRDIKSDSILLTHD--GRVKLSDFGFCAQVSKE  169 (292)
T ss_pred             HHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEEcccccceecccc
Confidence            34444443 366678999999999999999865  78999999988776653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=94.69  E-value=0.032  Score=60.08  Aligned_cols=47  Identities=26%  Similarity=0.247  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..+++++ .-+...|++|+|.+|.||+++.+  +++.|.|||+++..
T Consensus        99 ~~~~qi~~aL-~~LH~~~ivHrDikp~NIll~~~--~~~kL~DfG~~~~~  145 (328)
T cd05593          99 FYGAEIVSAL-DYLHSGKIVYRDLKLENLMLDKD--GHIKITDFGLCKEG  145 (328)
T ss_pred             HHHHHHHHHH-HHHHhCCeEecccCHHHeEECCC--CcEEEecCcCCccC
Confidence            3445555543 55678999999999999999864  89999999998753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=94.68  E-value=0.035  Score=59.82  Aligned_cols=45  Identities=24%  Similarity=0.329  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  +.+.|.|||++..
T Consensus       101 i~~qi~~~-l~~lH~~~ivH~Dikp~Nili~~~--~~~kL~DfG~~~~  145 (329)
T cd05618         101 YSAEISLA-LNYLHERGIIYRDLKLDNVLLDSE--GHIKLTDYGMCKE  145 (329)
T ss_pred             HHHHHHHH-HHHHHHCCeeeCCCCHHHEEECCC--CCEEEeeCCcccc
Confidence            44444444 455678999999999999999865  8999999999865

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=94.68  E-value=0.042  Score=57.57  Aligned_cols=48  Identities=27%  Similarity=0.393  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++.+ +.-+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       113 ~i~~~i~~a-L~~lH~~gi~H~dlkp~Nil~~~~--~~~~l~dfg~~~~~~  160 (284)
T cd05079         113 KYAVQICKG-MDYLGSRQYVHRDLAARNVLVESE--HQVKIGDFGLTKAIE  160 (284)
T ss_pred             HHHHHHHHH-HHHHHHCCeeecccchheEEEcCC--CCEEECCCccccccc
Confidence            344455544 356678999999999999999864  889999999988764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=94.66  E-value=0.027  Score=57.70  Aligned_cols=48  Identities=29%  Similarity=0.436  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ..++..++++ +..+...|++|.|.+|.||++..+  +++.|+|||....+
T Consensus       101 ~~~~~qi~~~-L~~Lh~~~i~H~dikp~NIl~~~~--~~~~l~Dfg~~~~~  148 (260)
T PF00069_consen  101 LKIAYQILEA-LAYLHSKGIVHRDIKPENILLDEN--GEVKLIDFGSSVKL  148 (260)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEEESSBSGGGEEESTT--SEEEESSGTTTEES
T ss_pred             cccccccccc-cccccccccccccccccccccccc--cccccccccccccc
Confidence            4556666665 577889999999999999999854  89999999998754

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=94.65  E-value=0.036  Score=58.14  Aligned_cols=48  Identities=27%  Similarity=0.408  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|++|+|++|.||++..+  +++.|.|||+...+..
T Consensus       110 ~~~ql~~~l-~~lH~~~~~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~  157 (288)
T cd05583         110 YIAEIVLAL-DHLHQLGIIYRDIKLENILLDSE--GHVVLTDFGLSKEFLA  157 (288)
T ss_pred             HHHHHHHHH-HHHHHCCeeccCCCHHHeEECCC--CCEEEEECcccccccc
Confidence            344555544 45578999999999999999764  8999999999877643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=94.65  E-value=0.035  Score=59.58  Aligned_cols=44  Identities=32%  Similarity=0.482  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      +..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+.+.
T Consensus       106 ~~qi~~~-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~  149 (323)
T cd05584         106 LSEISLA-LEHLHQQGIIYRDLKPENILLDAQ--GHVKLTDFGLCKE  149 (323)
T ss_pred             HHHHHHH-HHHHHHCCeecCCCCHHHeEECCC--CCEEEeeCcCCee
Confidence            3344443 456678999999999999999764  8999999998764

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=94.64  E-value=0.034  Score=58.98  Aligned_cols=49  Identities=22%  Similarity=0.336  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       142 ~i~~~i~~al-~~lH~~~ivH~dlkp~Nill~~~--~~~kl~DfG~~~~~~~  190 (304)
T cd05096         142 HVALQIASGM-KYLSSLNFVHRDLATRNCLVGEN--LTIKIADFGMSRNLYA  190 (304)
T ss_pred             HHHHHHHHHH-HHHHHCCccccCcchhheEEcCC--ccEEECCCccceeccc
Confidence            4555555544 34678999999999999999864  8999999999876643

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=94.63  E-value=0.034  Score=59.88  Aligned_cols=41  Identities=22%  Similarity=0.367  Sum_probs=35.0

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +.-+...|++|+|.+|.||+++.+  |.+.|.|||++..+++.
T Consensus       131 L~~LH~~~ivH~dlkp~NIll~~~--~~~kl~Dfg~~~~~~~~  171 (329)
T PTZ00263        131 FEYLHSKDIIYRDLKPENLLLDNK--GHVKVTDFGFAKKVPDR  171 (329)
T ss_pred             HHHHHHCCeeecCCCHHHEEECCC--CCEEEeeccCceEcCCC
Confidence            345678999999999999999864  89999999999887653

>PRK12396 5-methylribose kinase; Reviewed

Probab=94.63  E-value=0.041  Score=60.17  Aligned_cols=52  Identities=23%  Similarity=0.501  Sum_probs=45.0

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEe--cccccccCHHHHHHHHHHHHHHHhCCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLD--FGLTKKLSSSMKQALAKMFFAAAEGDH   90 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllD--fG~v~~l~~~~r~~l~~L~~a~~~~D~   90 (729)
                      ...++|+|.|||||+|.++   .+.+||  |+.+|.+.=+.=.-++.|+++...++.
T Consensus       226 ~~aLlHGDlHtGSI~v~~~---~~kvIDpEFAfyGP~gFDiG~~lanll~ay~~~~~  279 (409)
T PRK12396        226 AQALIHGDLHTGSVFVKND---STKVIDPEFAFYGPMGYDIGNVMANLMFAWVNADA  279 (409)
T ss_pred             chhhccCcCCCCCEEecCC---ceEEEcccccccCCcHHHHHHHHHHHHHHHhcCcc
Confidence            5678999999999999875   688888  788999988888889999999987654

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=94.63  E-value=0.036  Score=59.44  Aligned_cols=46  Identities=26%  Similarity=0.294  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.++ ..+...|++|+|.+|.||+++.+  |.+.|.|||++...
T Consensus       101 ~~~qi~~aL-~~LH~~~ivHrDikp~Nill~~~--~~~kL~Dfg~~~~~  146 (321)
T cd05591         101 YAAEVTLAL-MFLHRHGVIYRDLKLDNILLDAE--GHCKLADFGMCKEG  146 (321)
T ss_pred             HHHHHHHHH-HHHHHCCeeccCCCHHHeEECCC--CCEEEeecccceec
Confidence            444444443 55678999999999999999865  89999999988653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=94.62  E-value=0.026  Score=60.62  Aligned_cols=38  Identities=32%  Similarity=0.669  Sum_probs=33.1

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      +..+...|.+|.|.+||||++.+. .++-+|+|||+...
T Consensus       145 l~~~h~~GIvHRDiKpsNFL~n~~-t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  145 LAHLHKNGIVHRDIKPSNFLYNRR-TQRGVLVDFGLAQR  182 (418)
T ss_pred             hhhhhccCccccCCCccccccccc-cCCceEEechhHHH
Confidence            345558999999999999999986 78999999999876

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=94.62  E-value=0.036  Score=59.15  Aligned_cols=46  Identities=26%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++ +.-+...|++|+|.+|.||++..+  |.+.|.|||+....
T Consensus        98 ~~~qi~~~-l~~lH~~~i~HrDlkp~Nili~~~--~~~kl~Dfg~~~~~  143 (312)
T cd05585          98 YTAELLCA-LENLHKFNVIYRDLKPENILLDYQ--GHIALCDFGLCKLN  143 (312)
T ss_pred             HHHHHHHH-HHHHHhCCeEeCCCCHHHeEECCC--CcEEEEECcccccC
Confidence            44444544 345678999999999999999764  89999999998753

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=94.59  E-value=0.034  Score=59.58  Aligned_cols=46  Identities=26%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +++.|.|||+....
T Consensus       101 ~~~qi~~al-~~LH~~~ivH~dlkp~Nill~~~--~~~kL~Dfg~a~~~  146 (316)
T cd05592         101 YAAEIICGL-QFLHKKGIIYRDLKLDNVLLDKD--GHIKIADFGMCKEN  146 (316)
T ss_pred             HHHHHHHHH-HHHHHCCEEeCCCCHHHeEECCC--CCEEEccCcCCeEC
Confidence            445555543 45678999999999999999865  89999999998754

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=94.58  E-value=0.04  Score=60.52  Aligned_cols=48  Identities=31%  Similarity=0.443  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ ++.+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       147 ~~~qi~~a-L~~LH~~~ivHrDLkp~NIll~~~--~~ikL~DfG~a~~~~~  194 (371)
T cd05622         147 YTAEVVLA-LDAIHSMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNK  194 (371)
T ss_pred             HHHHHHHH-HHHHHHCCEEeCCCCHHHEEECCC--CCEEEEeCCceeEcCc
Confidence            34444444 456779999999999999999864  8999999999887754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=94.57  E-value=0.036  Score=60.50  Aligned_cols=49  Identities=31%  Similarity=0.407  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  |.+.|.|||++..+...
T Consensus       106 ~~~qi~~aL-~~lH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~~~~~~~~  154 (364)
T cd05599         106 YIAETILAI-DSIHKLGYIHRDIKPDNLLLDAK--GHIKLSDFGLCTGLKKS  154 (364)
T ss_pred             HHHHHHHHH-HHHHHCCeEeccCCHHHeEECCC--CCEEEeecccceecccc
Confidence            344444433 45578999999999999999865  89999999998776543

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=94.57  E-value=0.041  Score=57.50  Aligned_cols=48  Identities=27%  Similarity=0.390  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +++.|.|||+...++.
T Consensus       113 ~~~~l~~aL-~~LH~~~i~H~dlkp~nili~~~--~~~~l~dfg~~~~~~~  160 (284)
T cd05081         113 YASQICKGM-EYLGSKRYVHRDLATRNILVESE--NRVKIGDFGLTKVLPQ  160 (284)
T ss_pred             HHHHHHHHH-HHHHHCCceeccCCHhhEEECCC--CeEEECCCcccccccC
Confidence            344444433 45578999999999999999765  7899999999987754

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=94.55  E-value=0.035  Score=59.04  Aligned_cols=47  Identities=26%  Similarity=0.340  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  +.+.|.|||+.....
T Consensus       109 ~~~qi~~a-L~~lH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~~~  155 (309)
T cd07872         109 FLYQILRG-LAYCHRRKVLHRDLKPQNLLINER--GELKLADFGLARAKS  155 (309)
T ss_pred             HHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEECccccceecC
Confidence            44455554 355678999999999999999864  899999999986543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=94.47  E-value=0.039  Score=60.66  Aligned_cols=48  Identities=29%  Similarity=0.406  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       147 ~~~qil~a-L~~LH~~~IvHrDLKp~NILl~~~--~~~kL~DFG~a~~~~~  194 (370)
T cd05621         147 YTAEVVLA-LDAIHSMGLIHRDVKPDNMLLDKH--GHLKLADFGTCMKMDE  194 (370)
T ss_pred             HHHHHHHH-HHHHHHCCeEecCCCHHHEEECCC--CCEEEEecccceeccc
Confidence            44445444 355678999999999999999865  8999999999887653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=94.45  E-value=0.053  Score=55.66  Aligned_cols=51  Identities=25%  Similarity=0.322  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++.+. ..+...|++|+|.+|.||++..+  +++.|.|||....++..
T Consensus       105 ~~~~~qi~~~l-~~lh~~~i~H~di~p~Nili~~~--~~~~l~d~g~~~~~~~~  155 (256)
T cd05039         105 LGFALDVCEGM-EYLEEKNFVHRDLAARNVLVSED--LVAKVSDFGLAKEASQG  155 (256)
T ss_pred             HHHHHHHHHHH-HHHHhCCccchhcccceEEEeCC--CCEEEcccccccccccc
Confidence            34455555554 45678999999999999999764  89999999999887543

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=94.44  E-value=0.047  Score=58.87  Aligned_cols=39  Identities=28%  Similarity=0.431  Sum_probs=33.3

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..+...|++|+|.+|.||++..+  |++.|.|||+...+..
T Consensus       116 ~~lH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~~~~  154 (331)
T cd05597         116 DSVHQLGYVHRDIKPDNVLLDKN--GHIRLADFGSCLRLLA  154 (331)
T ss_pred             HHHHhCCeEECCCCHHHEEECCC--CCEEEEECCceeecCC
Confidence            45678999999999999999764  8999999999876643

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=94.41  E-value=0.033  Score=58.97  Aligned_cols=48  Identities=29%  Similarity=0.445  Sum_probs=40.9

Q ss_pred             HHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           27 TRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        27 ~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      +++|..|||       ..|..|.|.+|-|++|+++ +|.+=+=|||..+.|.....
T Consensus       127 iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~-tg~LKicDFGSAK~L~~~ep  181 (364)
T KOG0658|consen  127 IKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPD-TGVLKICDFGSAKVLVKGEP  181 (364)
T ss_pred             eHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCC-CCeEEeccCCcceeeccCCC
Confidence            456666666       6899999999999999987 79999999999999977654

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=94.39  E-value=0.044  Score=58.86  Aligned_cols=45  Identities=20%  Similarity=0.313  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  |.+.|.|||++..
T Consensus       106 ~~~qi~~al-~~lH~~~ivH~dlkp~Nill~~~--~~~kL~Dfg~~~~  150 (324)
T cd05587         106 YAAEIAIGL-FFLHSKGIIYRDLKLDNVMLDAE--GHIKIADFGMCKE  150 (324)
T ss_pred             HHHHHHHHH-HHHHHCCeEecCCCHHHeEEcCC--CCEEEeecCccee
Confidence            334444433 44578999999999999999865  8999999998764

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=94.37  E-value=0.06  Score=55.01  Aligned_cols=47  Identities=15%  Similarity=0.240  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +++-|+|||+.....
T Consensus        98 ~~~~~~~~l-~~lH~~~i~h~di~p~nili~~~--~~~~l~d~g~~~~~~  144 (251)
T cd05041          98 MSLDAAAGM-EYLESKNCIHRDLAARNCLVGEN--NVLKISDFGMSREEE  144 (251)
T ss_pred             HHHHHHHHH-HHHHhCCEehhhcCcceEEEcCC--CcEEEeecccccccc
Confidence            334444333 45678999999999999999764  899999999988665

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=94.37  E-value=0.044  Score=58.07  Aligned_cols=47  Identities=28%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+ +.-+...|++|+|.+|.||++..+  |++.|.|||++....
T Consensus       108 ~~~qi~~a-l~~lH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~~~  154 (303)
T cd07869         108 FLFQLLRG-LSYIHQRYILHRDLKPQNLLISDT--GELKLADFGLARAKS  154 (303)
T ss_pred             HHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEECCCCcceecc
Confidence            33344443 344568999999999999999764  899999999986543

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=94.36  E-value=0.047  Score=56.01  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +++.+.|||....+...
T Consensus       105 ~~~~i~~al-~~lH~~~i~H~dl~p~nili~~~--~~~~l~dfg~~~~~~~~  153 (255)
T cd08219         105 WFVQMCLGV-QHIHEKRVLHRDIKSKNIFLTQN--GKVKLGDFGSARLLTSP  153 (255)
T ss_pred             HHHHHHHHH-HHHhhCCcccCCCCcceEEECCC--CcEEEcccCcceeeccc
Confidence            344455433 56678999999999999999764  89999999998877543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=94.35  E-value=0.029  Score=59.94  Aligned_cols=35  Identities=23%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++.|+|.|++|+++..+  +..++|||+.+..=+.
T Consensus       186 ~~~l~HgD~~~~Nvl~~~~--~~~~vIDfd~~~~~~~  220 (307)
T TIGR00938       186 PRGVIHADLFPDNVLFDGD--SVKGVIDFYFACTDAR  220 (307)
T ss_pred             CCccCCCCCCcCcEEEECC--ceEEEeecccccCcch
Confidence            4799999999999999864  4468999999875443

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=94.35  E-value=0.058  Score=56.26  Aligned_cols=40  Identities=23%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .-+...|++|+|.+|+||++..+  +++.+.|||+...+...
T Consensus       115 ~~lh~~~ivH~dl~p~Nil~~~~--~~~~l~dfg~~~~~~~~  154 (277)
T cd06640         115 DYLHSEKKIHRDIKAANVLLSEQ--GDVKLADFGVAGQLTDT  154 (277)
T ss_pred             HHHHhCCccCcCCChhhEEEcCC--CCEEEcccccceeccCC
Confidence            45568899999999999999864  79999999999877653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=94.35  E-value=0.057  Score=57.99  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=29.7

Q ss_pred             HHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           33 QIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        33 qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .+.. .|++|+|.+|.||+++.+  |.+.|.|||++..
T Consensus       110 ~lH~~~~ivHrDikp~NIll~~~--~~~kL~Dfg~~~~  145 (325)
T cd05594         110 YLHSEKNVVYRDLKLENLMLDKD--GHIKITDFGLCKE  145 (325)
T ss_pred             HHHhcCCEEecCCCCCeEEECCC--CCEEEecCCCCee
Confidence            3444 699999999999999865  8999999998764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=94.34  E-value=0.047  Score=62.23  Aligned_cols=49  Identities=22%  Similarity=0.280  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       174 i~~qi~~a-L~~lH~~~ivHrDlkp~NIll~~~--~~~kL~DFgla~~~~~~  222 (478)
T PTZ00267        174 LFYQIVLA-LDEVHSRKMMHRDLKSANIFLMPT--GIIKLGDFGFSKQYSDS  222 (478)
T ss_pred             HHHHHHHH-HHHHHhCCEEECCcCHHhEEECCC--CcEEEEeCcCceecCCc
Confidence            33344433 355678899999999999999864  89999999999887653

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=94.34  E-value=0.056  Score=56.82  Aligned_cols=47  Identities=23%  Similarity=0.329  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..++.++ ..+...|++|+|.+|.||+++.+  +++.|.|||+....
T Consensus       114 ~~~~ql~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~  160 (292)
T cd06644         114 VICRQMLEAL-QYLHSMKIIHRDLKAGNVLLTLD--GDIKLADFGVSAKN  160 (292)
T ss_pred             HHHHHHHHHH-HHHhcCCeeecCCCcceEEEcCC--CCEEEccCccceec
Confidence            3445555544 45578899999999999999754  89999999987654

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=94.34  E-value=0.052  Score=57.08  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++. ..+...|++|+|.+|.||+|..+  |++.|.|||+...+...
T Consensus       106 ~~~qil~~l-~~lH~~~i~H~dl~p~nili~~~--~~~kl~dfg~~~~~~~~  154 (290)
T cd05580         106 YAAQVVLAL-EYLHSLDIVYRDLKPENLLLDSD--GYIKITDFGFAKRVKGR  154 (290)
T ss_pred             HHHHHHHHH-HHHHHCCEecCCCCHHHEEECCC--CCEEEeeCCCccccCCC
Confidence            344455544 45678999999999999999865  89999999998877654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=94.33  E-value=0.075  Score=56.78  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|++|.||+++.+  +.+.|.|||++..++.
T Consensus       130 i~~~i~~~l-~~lH~~~i~H~dL~p~Nil~~~~--~~~kl~dfg~~~~~~~  177 (317)
T cd06635         130 ITHGALQGL-AYLHSHNMIHRDIKAGNILLTEP--GQVKLADFGSASIASP  177 (317)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCCcccEEECCC--CCEEEecCCCccccCC
Confidence            344444433 45578999999999999999764  8999999999876654

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=94.32  E-value=0.059  Score=55.52  Aligned_cols=49  Identities=18%  Similarity=0.289  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .+++..++++. .-+...|++|+|.+|+||++..+  +++.|.|||+...+.
T Consensus       103 ~~~~~~i~~~l-~~lH~~~i~H~dl~p~nili~~~--~~~kl~d~g~~~~~~  151 (256)
T cd05113         103 LEMCKDVCEGM-AYLESKQFIHRDLAARNCLVDDQ--GCVKVSDFGLSRYVL  151 (256)
T ss_pred             HHHHHHHHHHH-HHHHhCCeeccccCcceEEEcCC--CCEEECCCccceecC
Confidence            34555555555 44578899999999999999764  799999999987663

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=94.32  E-value=0.049  Score=58.66  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=29.6

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .|++|+|.+|.||+++.+  +.+.|.|||+.+.+.+
T Consensus       123 ~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~  156 (331)
T cd06649         123 HQIMHRDVKPSNILVNSR--GEIKLCDFGVSGQLID  156 (331)
T ss_pred             CCEEcCCCChhhEEEcCC--CcEEEccCcccccccc
Confidence            469999999999999865  8999999999877654

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=94.31  E-value=0.039  Score=58.68  Aligned_cols=50  Identities=38%  Similarity=0.573  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +-+.+++.|.+||+       ..|++|+|.+|.||++.+. +|.+-|=|||+.+.+..
T Consensus       114 l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~-~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198|consen  114 LPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPS-NGDVKLADFGLAKKLES  170 (313)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCC-CCeEEeccCcccccccc
Confidence            44555555555554       7799999999999999863 47999999999988874

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=94.29  E-value=0.047  Score=60.12  Aligned_cols=41  Identities=29%  Similarity=0.442  Sum_probs=34.4

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..+...|++|+|.+|.||+++.+  |++.|.|||++..+...
T Consensus       114 L~~LH~~givHrDlKp~Nili~~~--~~~kL~DFGl~~~~~~~  154 (381)
T cd05626         114 IESVHKMGFIHRDIKPDNILIDLD--GHIKLTDFGLCTGFRWT  154 (381)
T ss_pred             HHHHHhCCeeecCCcHHHEEECCC--CCEEEeeCcCCcccccc
Confidence            456678999999999999999764  89999999998766433

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=94.29  E-value=0.056  Score=56.38  Aligned_cols=48  Identities=21%  Similarity=0.257  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +++.|.|||....++.
T Consensus       114 ~~~qi~~~L-~~lH~~~iiH~dlkp~Nil~~~~--~~~kL~dfG~~~~~~~  161 (279)
T cd05109         114 WCVQIAKGM-SYLEEVRLVHRDLAARNVLVKSP--NHVKITDFGLARLLDI  161 (279)
T ss_pred             HHHHHHHHH-HHHHHCCeeccccccceEEEcCC--CcEEECCCCceeeccc
Confidence            344444433 34468899999999999999754  7899999999887754

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=94.26  E-value=0.047  Score=58.70  Aligned_cols=46  Identities=26%  Similarity=0.346  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..+++++ .-+...|++|+|.+|.||++..+  +++.|.|||+....
T Consensus       101 ~~~qil~al-~~LH~~~ivHrDlkp~Nili~~~--~~~kl~Dfg~a~~~  146 (330)
T cd05586         101 YIAELVLAL-EHLHKYDIVYRDLKPENILLDAT--GHIALCDFGLSKAN  146 (330)
T ss_pred             HHHHHHHHH-HHHHHCCeEeccCCHHHeEECCC--CCEEEecCCcCcCC
Confidence            344444443 44578999999999999999864  89999999987653

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=94.25  E-value=0.057  Score=56.26  Aligned_cols=47  Identities=23%  Similarity=0.395  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       124 ~~~~l~~~l-~~lH~~~~vH~dlkp~Nil~~~~--~~~~l~dfg~~~~~~  170 (277)
T cd05062         124 MAGEIADGM-AYLNANKFVHRDLAARNCMVAED--FTVKIGDFGMTRDIY  170 (277)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCcchheEEEcCC--CCEEECCCCCccccC
Confidence            344455444 45678899999999999999864  899999999987654

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=94.25  E-value=0.056  Score=55.69  Aligned_cols=50  Identities=20%  Similarity=0.309  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. ..+...|++|+|.+|+|+++..+  +.+.|.|||....+..
T Consensus       105 ~~~~~~l~~al-~~lH~~~i~H~dl~~~Nill~~~--~~~~l~dfg~~~~~~~  154 (260)
T cd05069         105 VDMAAQIADGM-AYIERMNYIHRDLRAANILVGDN--LVCKIADFGLARLIED  154 (260)
T ss_pred             HHHHHHHHHHH-HHHHhCCEeecccCcceEEEcCC--CeEEECCCccceEccC
Confidence            44566666655 45589999999999999999864  7899999999877643

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=94.23  E-value=0.06  Score=55.67  Aligned_cols=50  Identities=20%  Similarity=0.303  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.++ ..+...|++|+|.+|.||+++.+  +.+.+.|||+...+...
T Consensus       111 ~~~~~l~~al-~~lH~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~~~~  160 (268)
T cd05063         111 GMLRGIAAGM-KYLSDMNYVHRDLAARNILVNSN--LECKVSDFGLSRVLEDD  160 (268)
T ss_pred             HHHHHHHHHH-HHHHHCCeeccccchhhEEEcCC--CcEEECCCccceecccc
Confidence            3444444444 55678999999999999999864  78999999998877543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=94.22  E-value=0.055  Score=55.26  Aligned_cols=49  Identities=24%  Similarity=0.367  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.++ ..+...|++|+|.+|.||++..+  +.+.|.|||++......
T Consensus       108 ~~~ql~~~l-~~lh~~~~~h~dl~~~nil~~~~--~~~~l~dfg~~~~~~~~  156 (258)
T smart00219      108 FALQIARGM-EYLESKNFIHRDLAARNCLVGEN--LVVKISDFGLSRDLYDD  156 (258)
T ss_pred             HHHHHHHHH-HHHhcCCeeecccccceEEEccC--CeEEEcccCCceecccc
Confidence            444454443 45678899999999999999764  78999999999887765

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=94.21  E-value=0.044  Score=58.80  Aligned_cols=51  Identities=22%  Similarity=0.354  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..++++. .-+...|++|+|.+|.||+++.+  +++.|.|||+...+....
T Consensus       107 ~i~~~l~~~l-~~LH~~gi~H~dlkp~nili~~~--~~~~L~dfg~~~~~~~~~  157 (330)
T cd07834         107 YFLYQILRGL-KYLHSANVIHRDLKPSNILVNSN--CDLKICDFGLARGVDPDE  157 (330)
T ss_pred             HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEcccCceEeecccc
Confidence            3555555555 45678999999999999999865  899999999999887654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=94.21  E-value=0.043  Score=59.07  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++.++ ..+...|++|+|.+|.||+++.+  +.+.|.|||+++.
T Consensus       101 ~~~qi~~~l-~~lH~~~ivH~dlkp~Nili~~~--~~~kL~Dfg~~~~  145 (329)
T cd05588         101 YSAEISLAL-NFLHERGIIYRDLKLDNVLLDAE--GHIKLTDYGMCKE  145 (329)
T ss_pred             HHHHHHHHH-HHHHHCCeEecCCCHHHeEECCC--CCEEECcCccccc
Confidence            344444433 55678999999999999999864  8999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=94.19  E-value=0.048  Score=58.71  Aligned_cols=46  Identities=26%  Similarity=0.303  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++.++ .-+...|++|+|.+|.||+++.+  +.+.|.|||++..
T Consensus       100 ~~~~qi~~al-~~lH~~~ivHrDlkp~Nili~~~--~~~kl~Dfg~~~~  145 (327)
T cd05617         100 FYAAEICIAL-NFLHERGIIYRDLKLDNVLLDAD--GHIKLTDYGMCKE  145 (327)
T ss_pred             HHHHHHHHHH-HHHHHCCeeccCCCHHHEEEeCC--CCEEEecccccee
Confidence            3455555543 45678999999999999999865  8999999998764

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=94.18  E-value=0.065  Score=54.73  Aligned_cols=52  Identities=21%  Similarity=0.294  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++.+. ..+...|++|+|..|.||++..+  +.+.|.|||+...+....
T Consensus       108 ~~~~~~l~~al-~~lH~~~i~H~di~p~nili~~~--~~~~l~dfg~~~~~~~~~  159 (262)
T cd00192         108 LSFAIQIAKGM-EYLASKKFVHRDLAARNCLVGED--LVVKISDFGLSRDVYDDD  159 (262)
T ss_pred             HHHHHHHHHHH-HHHHcCCcccCccCcceEEECCC--CcEEEccccccccccccc
Confidence            34455555544 56788999999999999999865  899999999999887643

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=94.18  E-value=0.058  Score=55.57  Aligned_cols=49  Identities=16%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. ..+...|++|+|.+|.||+++.+  +.+.|.|||+...+..
T Consensus       107 ~~~~~i~~~l-~~lH~~~i~H~dl~p~Nil~~~~--~~~~l~dfg~~~~~~~  155 (261)
T cd05068         107 DMAAQVASGM-AYLEAQNYIHRDLAARNVLVGEN--NICKVADFGLARVIKE  155 (261)
T ss_pred             HHHHHHHHHH-HHHHhCCeeeccCCcceEEEcCC--CCEEECCcceEEEccC
Confidence            3444444443 56678999999999999999865  7899999999988763

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>PF13354 Beta-lactamase2: Beta-lactamase enzyme family; PDB: 1G6A_A 1G68_A 3NIA_A 3NI9_B 1BUL_A 1BUE_A 4EUZ_A 4EV4_A 4EQI_A 1O7E_B

Probab=94.18  E-value=0.11  Score=51.53  Aligned_cols=32  Identities=41%  Similarity=0.494  Sum_probs=27.9

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|..|..||+-|.+.+    ..+++|+++||++|.
T Consensus        10 n~d~~~~~AS~~Kl~i~----~~v~~g~~~l~~~v~   41 (197)
T PF13354_consen   10 NADEPFPAASTIKLPIA----EAVDEGKLSLDERVT   41 (197)
T ss_dssp             STTSEEE-GGGGHHHHH----HHHHHTSTGTTSEEE
T ss_pred             CCCCcEechhHHHHHHH----HHHHhcCccccceeE
Confidence            78889999999999976    778889999999886

...

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=94.17  E-value=0.08  Score=54.11  Aligned_cols=48  Identities=17%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|+.|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       106 i~~~l~~al-~~lH~~~i~h~dl~~~nili~~~--~~~~l~df~~~~~~~~  153 (256)
T cd08529         106 FFIQILLGL-AHLHSKKILHRDIKSLNLFLDAY--DNVKIGDLGVAKLLSD  153 (256)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCCcceEEEeCC--CCEEEcccccceeccC
Confidence            444455444 45578999999999999999865  7999999999988764

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=94.15  E-value=0.047  Score=58.60  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  |.+.|.|||++...
T Consensus       106 ~~~qi~~al-~~lH~~~ivHrdlkp~Nill~~~--~~~kL~Dfg~~~~~  151 (324)
T cd05589         106 YAACVVLGL-QYLHENKIVYRDLKLDNLLLDTE--GFVKIADFGLCKEG  151 (324)
T ss_pred             HHHHHHHHH-HHHHhCCeEecCCCHHHeEECCC--CcEEeCcccCCccC
Confidence            445555444 45678999999999999999865  89999999987653

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=94.15  E-value=0.048  Score=58.50  Aligned_cols=46  Identities=20%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  +.+.|.|||++...
T Consensus       106 ~~~qi~~aL-~~LH~~~ivHrDlkp~Nill~~~--~~~kL~DfG~~~~~  151 (323)
T cd05616         106 YAAEIAIGL-FFLHSKGIIYRDLKLDNVMLDSE--GHIKIADFGMCKEN  151 (323)
T ss_pred             HHHHHHHHH-HHHHHCCEEecCCCHHHeEECCC--CcEEEccCCCceec
Confidence            444455444 44578999999999999999865  89999999988754

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=94.15  E-value=0.053  Score=56.92  Aligned_cols=49  Identities=24%  Similarity=0.394  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. ..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       119 ~~~~ql~~~l-~~lH~~~i~H~dl~p~Nil~~~~--~~~~l~d~g~~~~~~~  167 (285)
T cd06648         119 TVCLAVLKAL-SFLHAQGVIHRDIKSDSILLTSD--GRVKLSDFGFCAQVSK  167 (285)
T ss_pred             HHHHHHHHHH-HHHHhCCeecCCCChhhEEEcCC--CcEEEcccccchhhcc
Confidence            3555555554 56678999999999999999864  8999999998776543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=94.14  E-value=0.063  Score=55.85  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. .-+...|+.|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       113 ~~~~~l~~aL-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~  161 (284)
T cd05038         113 LFSSQICKGM-DYLGSQRYIHRDLAARNILVESE--DLVKISDFGLAKVLPE  161 (284)
T ss_pred             HHHHHHHHHH-HHHHhCCeecCCCCHHhEEEcCC--CCEEEccccccccccc
Confidence            3444555544 44578999999999999999865  8999999999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=94.13  E-value=0.055  Score=57.86  Aligned_cols=47  Identities=28%  Similarity=0.410  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. ..+...|++|+|.+|.||+++.+  +.+.|.|||+.....
T Consensus       103 ~~~qi~~~l-~~lH~~~i~H~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~  149 (318)
T cd05582         103 YLAELALAL-DHLHSLGIIYRDLKPENILLDEE--GHIKLTDFGLSKESI  149 (318)
T ss_pred             HHHHHHHHH-HHHHHCCEecCCCCHHHeEECCC--CcEEEeeccCCcccC
Confidence            444444444 45678999999999999999864  899999999877654

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=94.13  E-value=0.042  Score=59.00  Aligned_cols=46  Identities=26%  Similarity=0.281  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++.+. .-+...|++|+|.+|.||+++.+  +.+.|.|||++..
T Consensus        99 ~~~~qi~~aL-~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~Dfg~~~~  144 (323)
T cd05595          99 FYGAEIVSAL-EYLHSRDVVYRDIKLENLMLDKD--GHIKITDFGLCKE  144 (323)
T ss_pred             HHHHHHHHHH-HHHHHCCeEecCCCHHHEEEcCC--CCEEecccHHhcc
Confidence            3444555544 44578999999999999999864  8999999998765

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=94.12  E-value=0.041  Score=58.33  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=32.6

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      +.-+...|.+|+|.+|-|||++.+  |.|.|=|||+++.
T Consensus       138 L~~LH~~gIiyRDlKPENILLd~~--GHi~LtDFgL~k~  174 (357)
T KOG0598|consen  138 LGYLHSKGIIYRDLKPENILLDEQ--GHIKLTDFGLCKE  174 (357)
T ss_pred             HHHHHhCCeeeccCCHHHeeecCC--CcEEEeccccchh
Confidence            344568999999999999999875  8999999999993

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=94.12  E-value=0.063  Score=58.54  Aligned_cols=38  Identities=29%  Similarity=0.531  Sum_probs=32.5

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      +.-+...|++|+|.+|.||++..+  |.+.|.|||+....
T Consensus       136 L~~LH~~~ivHrDlkp~NIl~~~~--~~~kl~Dfg~a~~~  173 (359)
T cd07876         136 IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTA  173 (359)
T ss_pred             HHHHHhCCcccCCCCHHHEEECCC--CCEEEecCCCcccc
Confidence            345678999999999999999864  89999999998654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=94.12  E-value=0.053  Score=55.99  Aligned_cols=49  Identities=27%  Similarity=0.424  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. ..+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       110 ~~~~~l~~~l-~~lH~~~ivH~di~p~nil~~~~--~~~~l~dfg~~~~~~~  158 (267)
T cd06628         110 NFVRQILKGL-NYLHNRGIIHRDIKGANILVDNK--GGIKISDFGISKKLEA  158 (267)
T ss_pred             HHHHHHHHHH-HHHHhcCcccccCCHHHEEEcCC--CCEEecccCCCccccc
Confidence            4455555544 45578999999999999999754  8999999999988764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=94.10  E-value=0.05  Score=56.32  Aligned_cols=48  Identities=23%  Similarity=0.410  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.||.||++..+  +.+.|.|||+...+..
T Consensus       116 ~~~qi~~~l-~~LH~~~ivh~dl~~~nili~~~--~~~~l~Dfg~~~~~~~  163 (272)
T cd06637         116 ICREILRGL-SHLHQHKVIHRDIKGQNVLLTEN--AEVKLVDFGVSAQLDR  163 (272)
T ss_pred             HHHHHHHHH-HHHHHCCCccCCCCHHHEEECCC--CCEEEccCCCceeccc
Confidence            444455443 45678999999999999999865  7899999999887654

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=94.10  E-value=0.052  Score=57.45  Aligned_cols=49  Identities=22%  Similarity=0.338  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +++.|.|||++..+...
T Consensus       120 i~~~l~~al-~~LH~~~i~H~dL~p~Nili~~~--~~~kl~dfg~~~~~~~~  168 (296)
T cd06655         120 VCRECLQAL-EFLHANQVIHRDIKSDNVLLGMD--GSVKLTDFGFCAQITPE  168 (296)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEccCccchhcccc
Confidence            344444433 45678899999999999999864  89999999998887654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=94.07  E-value=0.067  Score=56.17  Aligned_cols=48  Identities=25%  Similarity=0.303  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ..++..++.+. ..+...|++|+|.+|.||+++.+  +++.|.|||+....
T Consensus       106 ~~~~~qi~~~L-~~lH~~~i~H~dlkp~Nil~~~~--~~~~l~Dfg~~~~~  153 (291)
T cd07870         106 RLFMFQLLRGL-AYIHGQHILHRDLKPQNLLISYL--GELKLADFGLARAK  153 (291)
T ss_pred             HHHHHHHHHHH-HHHHhCCcccCCCChHHEEEcCC--CcEEEecccccccc
Confidence            33455555554 45578999999999999999865  89999999988654

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=94.06  E-value=0.034  Score=59.22  Aligned_cols=42  Identities=21%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALA   79 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~   79 (729)
                      ...++|+|-|+||+++.++  +.+++|||++.+-=++..=.++.
T Consensus       197 ~~~lvHGD~~~gNlii~~~--~~~gVlDwe~~~lGDP~~Dl~~~  238 (321)
T COG3173         197 PPVLVHGDYRPGNLIIDPG--RPTGVLDWELATLGDPLEDLAII  238 (321)
T ss_pred             CceeeeCCcccCCEEEeCC--CeeEEEeccccccCCcHHHHHHH
Confidence            3578999999999999875  56999999999887776544443

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=94.06  E-value=0.059  Score=54.90  Aligned_cols=49  Identities=24%  Similarity=0.327  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. ..+...|++|+|.+|.|+++..+  +.+.|.|||+...+...
T Consensus       108 i~~~i~~~l-~~lh~~~~~H~dl~~~nil~~~~--~~~~l~d~~~~~~~~~~  156 (258)
T cd08215         108 WFVQLCLAL-KYLHSRKILHRDIKPQNIFLTSN--GLVKLGDFGISKVLSST  156 (258)
T ss_pred             HHHHHHHHH-HHHHhCCEecccCChHHeEEcCC--CcEEECCccceeecccC
Confidence            444444443 56678899999999999999864  89999999999876554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=94.05  E-value=0.057  Score=58.00  Aligned_cols=47  Identities=19%  Similarity=0.255  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..++.+ +.-+...|++|+|.+|.||+++.+  +.+.|.|||+....
T Consensus       105 ~i~~qi~~a-l~~lH~~~ivHrDikp~Nill~~~--~~ikL~Dfg~~~~~  151 (323)
T cd05615         105 FYAAEISVG-LFFLHRRGIIYRDLKLDNVMLDSE--GHIKIADFGMCKEH  151 (323)
T ss_pred             HHHHHHHHH-HHHHHHCCeeccCCCHHHeEECCC--CCEEEecccccccc
Confidence            344445544 355678999999999999999865  89999999987654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=94.05  E-value=0.062  Score=55.34  Aligned_cols=50  Identities=18%  Similarity=0.288  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.+. ..+...|++|+|.+|.||++..+  +++.|.|||....+..
T Consensus       105 ~~~~~~l~~al-~~lH~~~i~H~di~p~Nili~~~--~~~~l~dfg~~~~~~~  154 (260)
T cd05070         105 VDMAAQVAAGM-AYIERMNYIHRDLRSANILVGDG--LVCKIADFGLARLIED  154 (260)
T ss_pred             HHHHHHHHHHH-HHHHHCCcccCCCccceEEEeCC--ceEEeCCceeeeeccC
Confidence            45566666655 45689999999999999999864  7899999999987754

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=94.04  E-value=0.046  Score=57.87  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  +++.+.|||....+++.
T Consensus       120 ~~~~l~~~-L~~LH~~~i~H~dL~p~Nili~~~--~~~~l~Dfg~~~~~~~~  168 (297)
T cd06656         120 VCRECLQA-LDFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITPE  168 (297)
T ss_pred             HHHHHHHH-HHHHHHCCcccCCCCHHHEEECCC--CCEEECcCccceEccCC
Confidence            34444443 355678899999999999999764  89999999998876554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=93.99  E-value=0.056  Score=55.99  Aligned_cols=48  Identities=17%  Similarity=0.205  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. ..+...|++|.|.+|.||+++.+  +++.+.|||+.....
T Consensus       104 ~~~~qi~~~l-~~lH~~~ivH~dlkp~Nill~~~--~~~kl~dfg~~~~~~  151 (269)
T cd05042         104 RMACEVASGL-LWLHQADFIHSDLALRNCQLTAD--LSVKIGDYGLALEQY  151 (269)
T ss_pred             HHHHHHHHHH-HHHHhcCEecccccHhheEecCC--CcEEEeccccccccc
Confidence            3455555554 45678999999999999999865  899999999876543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=93.99  E-value=0.065  Score=55.91  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..+++.. .-+...|++|+|.+|.||++..+  +++.|.|||+...++..
T Consensus       104 ~~~~ql~~~l-~~LH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~~  153 (286)
T cd07847         104 KIIWQTLQAV-NFCHKHNCIHRDVKPENILITKQ--GQIKLCDFGFARILTGP  153 (286)
T ss_pred             HHHHHHHHHH-HHHHHCCceecCCChhhEEEcCC--CcEEECccccceecCCC
Confidence            3444444433 34567899999999999999865  89999999999887653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=93.98  E-value=0.055  Score=56.81  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=35.2

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       118 l~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~~~  158 (290)
T cd05613         118 LEHLHKLGIIYRDIKLENILLDSN--GHVVLTDFGLSKEFHED  158 (290)
T ss_pred             HHHHHhCCeeccCCCHHHeEECCC--CCEEEeeCccceecccc
Confidence            356678999999999999999865  89999999999887543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=93.98  E-value=0.058  Score=56.44  Aligned_cols=46  Identities=26%  Similarity=0.406  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..++.+ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++
T Consensus       114 ~~qi~~a-l~~lH~~~ivH~dikp~Nili~~~--~~~kl~dfg~~~~~~  159 (288)
T cd07863         114 MRQFLRG-LDFLHANCIVHRDLKPENILVTSG--GQVKLADFGLARIYS  159 (288)
T ss_pred             HHHHHHH-HHHHHhCCeecCCCCHHHEEECCC--CCEEECccCcccccc
Confidence            3334333 344578899999999999999865  899999999887654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=93.96  E-value=0.067  Score=56.18  Aligned_cols=48  Identities=19%  Similarity=0.341  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. +.++..|++|+|.+|.||+++.+  +++.|.|||....+..
T Consensus       133 ~~~qi~~al-~~lH~~~ivH~dlkp~nili~~~--~~~kl~dfg~~~~~~~  180 (291)
T cd06639         133 ILYGALLGL-QHLHNNRIIHRDVKGNNILLTTE--GGVKLVDFGVSAQLTS  180 (291)
T ss_pred             HHHHHHHHH-HHHHhCCeeccCCCHHHEEEcCC--CCEEEeecccchhccc
Confidence            344444433 55678999999999999999865  7899999999887754

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=93.96  E-value=0.059  Score=62.66  Aligned_cols=47  Identities=21%  Similarity=0.363  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++ +..+...|++|.|.+|.||+++.+ ++++.|.|||+.+.+
T Consensus       260 i~~qll~a-L~yLH~~gIiHRDLKP~NILl~~~-~~~~KL~DFGlA~~l  306 (566)
T PLN03225        260 IMRQILFA-LDGLHSTGIVHRDVKPQNIIFSEG-SGSFKIIDLGAAADL  306 (566)
T ss_pred             HHHHHHHH-HHHHHHCCEEeCcCCHHHEEEeCC-CCcEEEEeCCCcccc
Confidence            33444443 345568899999999999999864 478999999998754

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=93.95  E-value=0.065  Score=56.08  Aligned_cols=48  Identities=27%  Similarity=0.447  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...++.
T Consensus       105 ~~~qi~~~L-~~lH~~~i~H~dlkp~Nill~~~--~~~kl~Dfg~~~~~~~  152 (287)
T cd07848         105 YIYQLIKAI-HWCHKNDIVHRDIKPENLLISHN--DVLKLCDFGFARNLSE  152 (287)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CcEEEeeccCcccccc
Confidence            444444433 34468999999999999999764  8999999999987754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=93.94  E-value=0.072  Score=55.18  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. .-+...|++|+|.+|.||++..  ++++.|.|||....+..
T Consensus       110 ~i~~~l~~al-~~lH~~g~~H~dl~p~nili~~--~~~~kl~dfg~~~~~~~  158 (269)
T cd05065         110 GMLRGIAAGM-KYLSEMNYVHRDLAARNILVNS--NLVCKVSDFGLSRFLED  158 (269)
T ss_pred             HHHHHHHHHH-HHHHHCCEeecccChheEEEcC--CCcEEECCCcccccccc
Confidence            3444555544 4557899999999999999975  47899999998776643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=93.93  E-value=0.062  Score=56.03  Aligned_cols=51  Identities=24%  Similarity=0.432  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+...+...
T Consensus       102 ~~~~~~i~~~l-~~lH~~~i~H~dl~p~ni~~~~~--~~~~l~dfg~~~~~~~~  152 (286)
T cd07832         102 KSYMRMLLKGV-AYMHANGIMHRDLKPANLLISAD--GVLKIADFGLARLFSEE  152 (286)
T ss_pred             HHHHHHHHHHH-HHHHHCCeecCCcCHHHEEEcCC--CcEEEeeeeecccccCC
Confidence            34455555554 45578999999999999999864  88999999999877654

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=93.93  E-value=0.065  Score=57.13  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +++.|.|||..+.+..
T Consensus       139 ~~~qi~~aL-~~lH~~gi~H~dlkp~Nill~~~--~~~kL~Dfg~~~~~~~  186 (314)
T cd05099         139 CAYQVARGM-EYLESRRCIHRDLAARNVLVTED--NVMKIADFGLARGVHD  186 (314)
T ss_pred             HHHHHHHHH-HHHHHCCeeeccccceeEEEcCC--CcEEEccccccccccc
Confidence            455555554 45578999999999999999864  8999999999987754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PHA03211 serine/threonine kinase US3; Provisional

Probab=93.92  E-value=0.057  Score=61.18  Aligned_cols=48  Identities=25%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+.
T Consensus       264 ~i~~qi~~a-L~yLH~~gIvHrDLKP~NILl~~~--~~vkL~DFGla~~~~  311 (461)
T PHA03211        264 AVARQLLSA-IDYIHGEGIIHRDIKTENVLVNGP--EDICLGDFGAACFAR  311 (461)
T ss_pred             HHHHHHHHH-HHHHHHCCEEECcCCHHHEEECCC--CCEEEcccCCceecc
Confidence            344444443 345678999999999999999764  899999999987654

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=93.91  E-value=0.074  Score=54.69  Aligned_cols=50  Identities=18%  Similarity=0.315  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.+. ..+...|++|+|.+|.||++..+  +.+.|.|||....+..
T Consensus       106 ~~~~~~i~~al-~~lh~~~i~h~di~p~nili~~~--~~~~l~d~g~~~~~~~  155 (261)
T cd05034         106 VDMAAQIAEGM-AYLESRNYIHRDLAARNILVGEN--LVCKIADFGLARLIED  155 (261)
T ss_pred             HHHHHHHHHHH-HHHHhCCcccCCcchheEEEcCC--CCEEECccccceeccc
Confidence            34555555554 55679999999999999999875  8999999999988764

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=93.90  E-value=0.07  Score=54.93  Aligned_cols=48  Identities=21%  Similarity=0.291  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +++.|.|||+...++.
T Consensus       111 ~~~~l~~~l-~~lh~~~i~h~dl~p~nil~~~~--~~~~l~d~~~~~~~~~  158 (267)
T cd08224         111 YFVQLCSAL-EHMHSKRIMHRDIKPANVFITAT--GVVKLGDLGLGRFFSS  158 (267)
T ss_pred             HHHHHHHHH-HHHHhCCEecCCcChhhEEECCC--CcEEEeccceeeeccC
Confidence            344444444 45578999999999999999865  8999999999887654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=93.90  E-value=0.066  Score=58.04  Aligned_cols=49  Identities=31%  Similarity=0.522  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..+++++ ..+...|++|+|.+|.||+++.+  +++.|+|||+...+..
T Consensus       122 ~i~~qi~~al-~~LH~~gi~H~dlkp~Nill~~~--~~~kl~dfg~~~~~~~  170 (343)
T cd07880         122 FLVYQMLKGL-KYIHAAGIIHRDLKPGNLAVNED--CELKILDFGLARQTDS  170 (343)
T ss_pred             HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEeeccccccccc
Confidence            3445555544 45678999999999999999864  8999999999886653

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=93.89  E-value=0.064  Score=58.91  Aligned_cols=47  Identities=32%  Similarity=0.465  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       148 ~~qi~~a-L~~LH~~~ivHrDLkp~NILl~~~--~~~kL~DfG~~~~~~~  194 (370)
T cd05596         148 TAEVVLA-LDAIHSMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMDA  194 (370)
T ss_pred             HHHHHHH-HHHHHHCCeeccCCCHHHEEEcCC--CCEEEEeccceeeccC
Confidence            3444443 456678999999999999999864  8999999999876643

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=93.89  E-value=0.11  Score=56.34  Aligned_cols=47  Identities=30%  Similarity=0.499  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++++. ..+...|++|+|.+|.||+++.+  +++.|.|||+....+.
T Consensus       123 ~~qi~~aL-~~LH~~~i~H~dlkp~NIll~~~--~~~kL~dfg~~~~~~~  169 (342)
T cd07879         123 VYQMLCGL-KYIHSAGIIHRDLKPGNLAVNED--CELKILDFGLARHADA  169 (342)
T ss_pred             HHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEeeCCCCcCCCC
Confidence            33344333 45578899999999999999865  8999999999876543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=93.89  E-value=0.071  Score=54.85  Aligned_cols=51  Identities=24%  Similarity=0.412  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .+++..++.+. +.+...|++|+|.+|.||++..+  +.+-|.|||+...+...
T Consensus        98 ~~i~~qi~~al-~~lH~~~i~H~dlkp~nill~~~--~~~kl~Dfg~~~~~~~~  148 (257)
T cd05116          98 TELVHQVSMGM-KYLEETNFVHRDLAARNVLLVTQ--HYAKISDFGLSKALGAD  148 (257)
T ss_pred             HHHHHHHHHHH-HHHHHCCEeecccchhhEEEcCC--CeEEECCCccccccCCC
Confidence            34455555544 56689999999999999999864  78999999998776533

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=93.88  E-value=0.09  Score=53.95  Aligned_cols=48  Identities=25%  Similarity=0.387  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|..|.||+++.+  +.+.|.|||....+..
T Consensus       106 ~~~ql~~~l-~~lh~~~i~h~dl~p~ni~i~~~--~~~~l~d~g~~~~~~~  153 (262)
T cd06613         106 VCRETLKGL-AYLHETGKIHRDIKGANILLTED--GDVKLADFGVSAQLTA  153 (262)
T ss_pred             HHHHHHHHH-HHHHhCCceecCCChhhEEECCC--CCEEECccccchhhhh
Confidence            444455444 34568999999999999999864  8999999999877654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>PRK06148 hypothetical protein; Provisional

Probab=93.85  E-value=0.14  Score=63.65  Aligned_cols=53  Identities=23%  Similarity=0.331  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHH------HHcCccccCCCCCCeEEecCCCCCe-EEEecccccccC
Q 004807           19 KQKVVEEITRAYAHQI------YVDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLS   71 (729)
Q Consensus        19 ~~~la~~l~~~~~~qi------f~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~   71 (729)
                      .+++.+.+++.|.+.+      +..+++|+|.|+.||+|+.+.+++| ++||||-+..=+
T Consensus       179 ~r~~l~~~~~~~~~~v~p~l~~Lp~~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~~~  238 (1013)
T PRK06148        179 DRALVERFLARFERNVAPRLAALPAQVIHNDANDYNILVDADDGERISGLIDFGDAVHAP  238 (1013)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcceECCCCCcccEEEcCCCCcceEEEEECccccccc
Confidence            3455556666554422      3578999999999999987633366 599999998753

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=93.85  E-value=0.043  Score=55.95  Aligned_cols=35  Identities=14%  Similarity=0.212  Sum_probs=28.3

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++.|+|+||+||+++.+ ++.+.||||=.++.=++
T Consensus       170 ~~l~H~Dl~~~Nil~~~~-~~~~~lIDwe~a~~~~~  204 (235)
T cd05157         170 IVFCHNDLLSGNIIYNEE-KNSVKFIDYEYAGYNYR  204 (235)
T ss_pred             EEEEcCCCCcCcEEEeCC-CCCEEEEEcccCCcCch
Confidence            579999999999999862 36899999988774433

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=93.84  E-value=0.064  Score=56.55  Aligned_cols=48  Identities=31%  Similarity=0.405  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |++.|.|||+...+..
T Consensus       106 ~~~qi~~~-l~~lH~~~i~H~dlkp~NIli~~~--~~~kl~Dfg~~~~~~~  153 (291)
T cd05612         106 YASEIVCA-LEYLHSKEIVYRDLKPENILLDKE--GHIKLTDFGFAKKLRD  153 (291)
T ss_pred             HHHHHHHH-HHHHHHCCeeecCCCHHHeEECCC--CCEEEEecCcchhccC
Confidence            34444443 345678999999999999999764  8999999999876643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=93.83  E-value=0.076  Score=56.52  Aligned_cols=48  Identities=25%  Similarity=0.344  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.++ .-+...|++|+|.+|.||++..+  +.+.|.|||+....+.
T Consensus       108 ~~~qi~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~~  155 (316)
T cd05574         108 YAAEVLLAL-EYLHLLGIVYRDLKPENILLHES--GHIMLSDFDLSKQSDV  155 (316)
T ss_pred             HHHHHHHHH-HHHHHCCeeccCCChHHeEEcCC--CCEEEeecchhhcccc
Confidence            344444444 34578999999999999999864  8999999999887654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=93.82  E-value=0.056  Score=57.24  Aligned_cols=50  Identities=26%  Similarity=0.404  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.++ .-+...|++|+|.+|+||+++.+  +.+.|.|||+...+..
T Consensus       120 ~~~~~qi~~~L-~~LH~~~ivH~dl~p~Nill~~~--~~~kL~dfg~~~~~~~  169 (297)
T cd06659         120 ATVCESVLQAL-CYLHSQGVIHRDIKSDSILLTLD--GRVKLSDFGFCAQISK  169 (297)
T ss_pred             HHHHHHHHHHH-HHHHhCCeecCCCCHHHeEEccC--CcEEEeechhHhhccc
Confidence            33455555543 45678899999999999999865  8999999998876554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=93.82  E-value=0.074  Score=54.62  Aligned_cols=48  Identities=33%  Similarity=0.444  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++.+. .-+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       106 ~~~~~i~~~l-~~lH~~~i~H~dlkp~nil~~~~--~~~kl~dfg~~~~~~  153 (256)
T cd05082         106 KFSLDVCEAM-EYLEANNFVHRDLAARNVLVSED--NVAKVSDFGLTKEAS  153 (256)
T ss_pred             HHHHHHHHHH-HHHHhCCEeccccchheEEEcCC--CcEEecCCccceecc
Confidence            3444555443 55678999999999999999864  899999999887654

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=93.81  E-value=0.084  Score=56.32  Aligned_cols=48  Identities=23%  Similarity=0.308  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       114 ~~~qi~~~L-~~LH~~~iiH~dlkp~Nill~~~--~~~kl~DfG~a~~~~~  161 (316)
T cd05108         114 WCVQIAKGM-NYLEERRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLGA  161 (316)
T ss_pred             HHHHHHHHH-HHHHhcCeeccccchhheEecCC--CcEEEccccccccccC
Confidence            344444443 55678999999999999999864  7899999999987754

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=93.79  E-value=0.071  Score=58.26  Aligned_cols=47  Identities=23%  Similarity=0.447  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +.+.|.|||+.....
T Consensus       131 ~~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~DfG~a~~~~  177 (364)
T cd07875         131 LLYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAG  177 (364)
T ss_pred             HHHHHHHH-HHHHhhCCeecCCCCHHHEEECCC--CcEEEEeCCCccccC
Confidence            34444433 345568899999999999999864  899999999987654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=93.79  E-value=0.054  Score=53.84  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             HcCccccCCCCCCeEEecCCCC---CeEEEecccccccCHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPH---RPILLDFGLTKKLSSSM   74 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g---~lvllDfG~v~~l~~~~   74 (729)
                      ...+.|+|+|++|+++..+++|   .++||||..++.=++..
T Consensus       119 ~~vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g~p~~  160 (196)
T smart00587      119 FNVLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYGSPAE  160 (196)
T ss_pred             ceEEeeCCCCccceeeccCCCCCccceEEEecccCCcCChHH
Confidence            3467899999999999876444   69999999999887654

subfamily of choline kinases

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=93.78  E-value=0.068  Score=55.36  Aligned_cols=39  Identities=23%  Similarity=0.422  Sum_probs=33.1

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .-+...|++|+|.+|.||++..+  +.+.+.|||+...+..
T Consensus       126 ~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~  164 (272)
T cd05075         126 EYLSSKSFIHRDLAARNCMLNEN--MNVCVADFGLSKKIYN  164 (272)
T ss_pred             HHHHHCCeeccccchhheEEcCC--CCEEECCCCcccccCc
Confidence            45568999999999999999764  7899999999877653

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=93.77  E-value=0.072  Score=58.51  Aligned_cols=47  Identities=28%  Similarity=0.429  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ ++.+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       107 ~~ql~~a-L~~LH~~givHrDlkp~NIll~~~--~~~kl~DfGla~~~~~  153 (377)
T cd05629         107 MAECVLA-IEAVHKLGFIHRDIKPDNILIDRG--GHIKLSDFGLSTGFHK  153 (377)
T ss_pred             HHHHHHH-HHHHHhCCeeccCCCHHHEEECCC--CCEEEeeccccccccc
Confidence            3344433 356678999999999999999864  8999999999876643

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=93.76  E-value=0.078  Score=56.13  Aligned_cols=50  Identities=18%  Similarity=0.319  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||....+...
T Consensus       141 ~~~~qi~~al-~~LH~~givH~dlkp~Nili~~~--~~~kl~D~g~~~~~~~~  190 (304)
T cd05101         141 SCTYQVARGM-EYLASQKCIHRDLAARNVLVTEN--NVMKIADFGLARDVNNI  190 (304)
T ss_pred             HHHHHHHHHH-HHHHHCCeeecccccceEEEcCC--CcEEECCCccceecccc
Confidence            3444555554 45578999999999999999864  89999999998877543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=93.76  E-value=0.088  Score=54.41  Aligned_cols=46  Identities=22%  Similarity=0.343  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..++.+. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       112 ~~~l~~~l-~~Lh~~~i~H~di~p~nili~~~--~~~~l~dfg~~~~~~  157 (266)
T cd05033         112 LRGIASGM-KYLSEMNYVHRDLAARNILVNSN--LVCKVSDFGLSRRLE  157 (266)
T ss_pred             HHHHHHHH-HHHHhCCcccCCCCcceEEEcCC--CCEEECccchhhccc
Confidence            33444333 45578999999999999999864  789999999999885

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>TIGR02721 ycfN_thiK thiamine kinase

Probab=93.75  E-value=0.042  Score=56.99  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..+.|+|+|||||++.++   ++.||||..++-=++.+
T Consensus       146 ~~l~H~Dl~~~Nil~~~~---~~~lIDwE~a~~gdp~~  180 (256)
T TIGR02721       146 LAPLHMDVHAYNLVVTPQ---GLKLIDWEYASDGDIAL  180 (256)
T ss_pred             CeeecCCCCcCcEEEeCC---CCEEEeccccCcCCHHH
Confidence            468999999999999864   48999999888766654

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=93.72  E-value=0.087  Score=54.87  Aligned_cols=49  Identities=22%  Similarity=0.382  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +.+.+.|||+...+...
T Consensus       106 ~~~~i~~~l-~~lH~~~ivH~dl~p~ni~i~~~--~~~~l~dfg~~~~~~~~  154 (277)
T cd06642         106 ILREILKGL-DYLHSERKIHRDIKAANVLLSEQ--GDVKLADFGVAGQLTDT  154 (277)
T ss_pred             HHHHHHHHH-HHHhcCCeeccCCChheEEEeCC--CCEEEccccccccccCc
Confidence            334444433 23456799999999999999865  78999999999887653

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=93.72  E-value=0.13  Score=54.74  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=28.2

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccc-cccCHHHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLT-KKLSSSMKQ   76 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v-~~l~~~~r~   76 (729)
                      .|+.|+|.|++|+++..   +++.+|||+.+ -.....+-.
T Consensus       187 ~~liHgD~~~~Nil~~~---~~i~lIDfd~~~~~~~~~Dla  224 (313)
T TIGR02906       187 RGFCHQDYAYHNILLKD---NEVYVIDFDYCTIDLPVRDLR  224 (313)
T ss_pred             CceEcCCCCcccEEEeC---CcEEEEECcccccCCcHHHHH
Confidence            68899999999999974   57999999954 334444333

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=93.70  E-value=0.086  Score=55.10  Aligned_cols=48  Identities=23%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.++ .-+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       100 ~~~qi~~al-~~lH~~~ivH~dikp~Nili~~~--~~~~l~Dfg~~~~~~~  147 (277)
T cd05607         100 YSAQITCGI-LHLHSMDIVYRDMKPENVLLDDQ--GNCRLSDLGLAVELKD  147 (277)
T ss_pred             HHHHHHHHH-HHHHHCCEEEccCChHhEEEcCC--CCEEEeeceeeeecCC
Confidence            344455443 55678999999999999999864  7899999999877654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=93.69  E-value=0.075  Score=55.64  Aligned_cols=47  Identities=21%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. ..+...|++|.|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       102 i~~qi~~al-~~lH~~~ivH~dikp~Nil~~~~--~~~~l~dfg~~~~~~  148 (279)
T cd05633         102 YATEIILGL-EHMHNRFVVYRDLKPANILLDEH--GHVRISDLGLACDFS  148 (279)
T ss_pred             HHHHHHHHH-HHHHHCCcCCCCCCHHHEEECCC--CCEEEccCCcceecc
Confidence            444444433 56778999999999999999764  799999999887654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=93.68  E-value=0.054  Score=59.63  Aligned_cols=38  Identities=32%  Similarity=0.544  Sum_probs=32.6

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      +..+...|++|+|.+|.||+++.+  |.+.|.|||++..+
T Consensus       114 l~~lH~~~ivHrDlKp~NILl~~~--g~~kL~DFGla~~~  151 (382)
T cd05625         114 VESVHKMGFIHRDIKPDNILIDRD--GHIKLTDFGLCTGF  151 (382)
T ss_pred             HHHHHhCCeecCCCCHHHEEECCC--CCEEEeECCCCccc
Confidence            455678999999999999999865  89999999997644

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=93.68  E-value=0.086  Score=56.04  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             HHcCccccCCCCCCeEEecC--CCCCeEEEecccccccCHHH
Q 004807           35 YVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        35 f~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~~~   74 (729)
                      ...++.|+|.|||||++..+  .++++.||||..++.=++.+
T Consensus       177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~p~~  218 (302)
T cd05156         177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNYRGF  218 (302)
T ss_pred             CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCCcHH
Confidence            45678999999999999852  02689999999999666543

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=93.67  E-value=0.07  Score=54.28  Aligned_cols=53  Identities=26%  Similarity=0.351  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ..++..++++. ..+...|++|+|.+|.||+++.+  +++.|.|||+...+.....
T Consensus       104 ~~~~~~l~~~l-~~lh~~~~~h~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~~~  156 (260)
T cd06606         104 RKYTRQILEGL-AYLHSNGIVHRDIKGANILVDSD--GVVKLADFGCAKRLGDIET  156 (260)
T ss_pred             HHHHHHHHHHH-HHHHHCCccccCCCHHHEEEcCC--CCEEEcccccEEecccccc
Confidence            44566666655 35678999999999999999864  8999999999988877643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=93.67  E-value=0.082  Score=55.13  Aligned_cols=49  Identities=18%  Similarity=0.334  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       103 ~~~~~i~~~L-~~lH~~~~~H~dl~p~nil~~~~--~~~~l~df~~~~~~~~  151 (283)
T cd07835         103 SYLYQLLQGI-AYCHSHRVLHRDLKPQNLLIDRE--GALKLADFGLARAFGV  151 (283)
T ss_pred             HHHHHHHHHH-HHHHHCCeeCCCCCHHHEEEcCC--CcEEEeecccccccCC
Confidence            3455555543 45678999999999999999864  8999999999876643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=93.67  E-value=0.099  Score=54.47  Aligned_cols=48  Identities=33%  Similarity=0.575  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++++  +++.|.|||....+..
T Consensus       104 ~~~~l~~~l-~~Lh~~~i~H~dl~~~ni~i~~~--~~~~l~d~~~~~~~~~  151 (283)
T cd07830         104 IIYQILQGL-AHIHKHGFFHRDLKPENLLVSGP--EVVKIADFGLAREIRS  151 (283)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCChhhEEEcCC--CCEEEeecccceeccC
Confidence            344444433 45578999999999999999864  8999999999887654

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=93.65  E-value=0.069  Score=54.73  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHH-----HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIY-----VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif-----~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. ..+.     ..|++|+|.||.||+++.+  +.+.|.|||+...++..
T Consensus       110 ~~~~i~~~l-~~lH~~~~~~~~i~h~dl~p~nili~~~--~~~kl~d~g~~~~~~~~  163 (265)
T cd08217         110 ILTQLLLAL-YECHNRSDPGNTVLHRDLKPANIFLDAN--NNVKLGDFGLAKILGHD  163 (265)
T ss_pred             HHHHHHHHH-HHHhcCccccCcceecCCCHHHEEEecC--CCEEEecccccccccCC
Confidence            444444444 3445     7799999999999999864  89999999999988653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=93.59  E-value=0.07  Score=55.54  Aligned_cols=51  Identities=20%  Similarity=0.348  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..+++++ ..+...|++|+|.+|.||++..+  +.+.+.|||+...+....
T Consensus       104 ~i~~~i~~al-~~LH~~~~~h~dl~p~nil~~~~--~~~~l~d~g~~~~~~~~~  154 (287)
T cd07840         104 CYMKQLLEGL-QYLHSNGILHRDIKGSNILINND--GVLKLADFGLARPYTKRN  154 (287)
T ss_pred             HHHHHHHHHH-HHHHHCCceeccCcHHHeEEcCC--CCEEEccccceeeccCCC
Confidence            4455555554 45678999999999999999864  899999999998886653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=93.56  E-value=0.081  Score=54.70  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=30.8

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .|++|+|.+|.||++..+  +++.|.|||+...++..
T Consensus       133 ~~i~H~dl~~~nil~~~~--~~~~l~dfg~~~~~~~~  167 (269)
T cd08528         133 KRIVHRDLTPNNIMLGED--DKVTITDFGLAKQKQPE  167 (269)
T ss_pred             CceeecCCCHHHEEECCC--CcEEEecccceeecccc
Confidence            579999999999999865  89999999999887654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=93.54  E-value=0.11  Score=55.02  Aligned_cols=48  Identities=19%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+  +.+.|.|||+....++
T Consensus       120 ~~~ql~~~L-~~LH~~~i~H~dl~p~nIl~~~~--~~~kL~dfg~~~~~~~  167 (307)
T cd06607         120 ICHGALQGL-AYLHSHERIHRDIKAGNILLTEP--GTVKLADFGSASLVSP  167 (307)
T ss_pred             HHHHHHHHH-HHHHHCCceecCCCcccEEECCC--CCEEEeecCcceecCC
Confidence            344444443 45578999999999999999864  8999999999876653

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=93.54  E-value=0.13  Score=54.41  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             ccccCCCCCCeEEecCCCC---CeEEEecccccccCH
Q 004807           39 FFNGDPHPGNFLVSKDPPH---RPILLDFGLTKKLSS   72 (729)
Q Consensus        39 ffHaDPHPGNilv~~d~~g---~lvllDfG~v~~l~~   72 (729)
                      +.|+|+|.+||++..+++|   .++||||-+++.=++
T Consensus       217 l~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~g~p  253 (294)
T PF02958_consen  217 LCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARYGSP  253 (294)
T ss_pred             EEcCccCHHhEeEccccccccccceeeccccccCCCc
Confidence            5799999999999987655   799999998876555

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>PTZ00036 glycogen synthase kinase; Provisional

Probab=93.53  E-value=0.08  Score=59.66  Aligned_cols=48  Identities=29%  Similarity=0.360  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+ ++.+.|.|||+.+.+.
T Consensus       175 ~~~qi~~gL-~yLH~~~IiHrDLKp~NILl~~~-~~~vkL~DFGla~~~~  222 (440)
T PTZ00036        175 YSYQLCRAL-AYIHSKFICHRDLKPQNLLIDPN-THTLKLCDFGSAKNLL  222 (440)
T ss_pred             HHHHHHHHH-HHHHHCCEecCCcCHHHEEEcCC-CCceeeeccccchhcc
Confidence            334444433 44578999999999999999864 3568999999987654

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=93.53  E-value=0.066  Score=55.00  Aligned_cols=52  Identities=19%  Similarity=0.411  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..+++++ ..+.. .|++|+|.+|.||++..+  +.+.|.|||....+....
T Consensus       102 ~~~~~~l~~~l-~~lh~~~~~~H~~l~~~ni~~~~~--~~~~l~df~~~~~~~~~~  154 (264)
T cd06623         102 AYIARQILKGL-DYLHTKRHIIHRDIKPSNLLINSK--GEVKIADFGISKVLENTL  154 (264)
T ss_pred             HHHHHHHHHHH-HHHhccCCCccCCCCHHHEEECCC--CCEEEccCccceecccCC
Confidence            34555555555 45667 899999999999999864  899999999988775433

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>PRK06149 hypothetical protein; Provisional

Probab=93.53  E-value=0.079  Score=65.62  Aligned_cols=35  Identities=23%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             HHcCccccCCCCCCeEEecCCCCCe---EEEecccccc
Q 004807           35 YVDGFFNGDPHPGNFLVSKDPPHRP---ILLDFGLTKK   69 (729)
Q Consensus        35 f~~GffHaDPHPGNilv~~d~~g~l---vllDfG~v~~   69 (729)
                      +..|.+|+|.|+.||+|..++++++   ++||||-+..
T Consensus       206 L~~g~IH~Dl~~~Nilv~~~~~~~~~v~giIDFgD~~~  243 (972)
T PRK06149        206 LPLQAVHLDITDDNVVGSRDADGRWQPDGVIDFGDLVR  243 (972)
T ss_pred             CcccccCCCCCcccEEEcCCCCCCcceeEEEEcccchh
Confidence            4799999999999999987633444   9999999875

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=93.52  E-value=0.089  Score=54.05  Aligned_cols=48  Identities=25%  Similarity=0.423  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. ..+...|++|+|.+|.||++..+  +.+-+.|||+...+.
T Consensus       104 ~i~~qi~~~l-~~lH~~~i~H~dl~p~ni~i~~~--~~~kl~dfg~~~~~~  151 (256)
T cd05059         104 DMCSDVCEAM-EYLESNGFIHRDLAARNCLVGED--NVVKVSDFGLARYVL  151 (256)
T ss_pred             HHHHHHHHHH-HHHHHCCcccccccHhhEEECCC--CcEEECCcccceecc
Confidence            3455555544 45678999999999999999764  899999999987654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=93.51  E-value=0.1  Score=54.13  Aligned_cols=48  Identities=25%  Similarity=0.393  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.+|+||++..+  +.+.+.|||+......
T Consensus       113 ~~~qi~~~l-~~lH~~~i~H~dl~~~nil~~~~--~~~~l~d~~~~~~~~~  160 (272)
T cd06629         113 FTEQVLEGL-AYLHSKGILHRDLKADNLLVDAD--GICKISDFGISKKSDD  160 (272)
T ss_pred             HHHHHHHHH-HHHhhCCeeecCCChhhEEEcCC--CeEEEeeccccccccc
Confidence            444455443 45668999999999999999864  8999999999876543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=93.50  E-value=0.084  Score=54.11  Aligned_cols=47  Identities=30%  Similarity=0.432  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+....
T Consensus        97 ~i~~qi~~~L-~~lH~~~i~H~di~~~nil~~~~--~~~~l~dfg~~~~~  143 (265)
T cd05579          97 IYIAEIVLAL-EYLHSNGIIHRDLKPDNILIDSN--GHLKLTDFGLSKVG  143 (265)
T ss_pred             HHHHHHHHHH-HHHHHcCeecCCCCHHHeEEcCC--CCEEEEecccchhc
Confidence            3455555544 45578999999999999999865  79999999986654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=93.49  E-value=0.069  Score=55.70  Aligned_cols=47  Identities=21%  Similarity=0.303  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  |.+.|.|||+...+.
T Consensus       106 ~~~qi~~~L-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~  152 (285)
T cd07861         106 YLYQILQGI-LFCHSRRVLHRDLKPQNLLIDNK--GVIKLADFGLARAFG  152 (285)
T ss_pred             HHHHHHHHH-HHHHhCCeeecCCCHHHEEEcCC--CcEEECcccceeecC
Confidence            445555544 44568999999999999999865  899999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=93.49  E-value=0.083  Score=56.93  Aligned_cols=47  Identities=26%  Similarity=0.317  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       107 ~~~qi~~a-l~~lH~~~iiHrDlkp~Nili~~~--~~~kL~DfG~a~~~~  153 (332)
T cd05623         107 YLAEMVIA-IDSVHQLHYVHRDIKPDNILMDMN--GHIRLADFGSCLKLM  153 (332)
T ss_pred             HHHHHHHH-HHHHHHCCeEecCCCHHHEEECCC--CCEEEeecchheecc
Confidence            34444443 355678999999999999999764  899999999886653

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=93.48  E-value=0.086  Score=55.07  Aligned_cols=50  Identities=20%  Similarity=0.415  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.+. ..+...|+.|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus        98 ~~~~~qi~~~l-~~lH~~~i~H~dlkp~Nill~~~--~~~~l~dfg~~~~~~~  147 (279)
T cd06619          98 GRIAVAVVKGL-TYLWSLKILHRDVKPSNMLVNTR--GQVKLCDFGVSTQLVN  147 (279)
T ss_pred             HHHHHHHHHHH-HHHHHCCEeeCCCCHHHEEECCC--CCEEEeeCCcceeccc
Confidence            34555555544 55678999999999999999865  8999999999887654

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=93.48  E-value=0.084  Score=54.52  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. .-+...|++|+|.+|+|++++.+  +.+.|.|||+...+..
T Consensus       109 ~~~~~qi~~~l-~~lH~~~i~H~dl~p~nill~~~--~~~~l~dfg~~~~~~~  158 (267)
T cd06646         109 AYVCRETLQGL-AYLHSKGKMHRDIKGANILLTDN--GDVKLADFGVAAKITA  158 (267)
T ss_pred             HHHHHHHHHHH-HHHHHCCccccCCCHHHEEECCC--CCEEECcCccceeecc
Confidence            33455555544 45578899999999999999764  7899999999988753

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=93.46  E-value=0.089  Score=54.29  Aligned_cols=49  Identities=24%  Similarity=0.415  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  +++-|.|||+...+...
T Consensus       118 ~~~ql~~al-~~lH~~~i~H~~l~p~ni~~~~~--~~~~l~d~~~~~~~~~~  166 (275)
T cd06608         118 ILRETLRGL-AYLHENKVIHRDIKGQNILLTKN--AEVKLVDFGVSAQLDST  166 (275)
T ss_pred             HHHHHHHHH-HHHhcCCcccCCCCHHHEEEccC--CeEEECCCccceecccc
Confidence            445555554 34578999999999999999865  78999999998876543

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=93.45  E-value=0.084  Score=52.51  Aligned_cols=51  Identities=25%  Similarity=0.358  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..+++.. ..+...|++|+|.+|.|+++..+  +++.|+|||....+....
T Consensus       102 ~~~~~l~~~l-~~lh~~~i~h~di~~~ni~v~~~--~~~~l~d~g~~~~~~~~~  152 (225)
T smart00221      102 FYLRQILEAL-EYLHSLGIVHRDLKPENILLGMD--GLVKLADFGLARFIHRDL  152 (225)
T ss_pred             HHHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC--CCEEEeeCceeeEecCcc
Confidence            3444444443 45667899999999999999864  899999999999887654

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=93.44  E-value=0.086  Score=55.02  Aligned_cols=48  Identities=23%  Similarity=0.417  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       126 ~~~qi~~al-~~LH~~~ivH~dl~~~nili~~~--~~~~l~dfg~~~~~~~  173 (282)
T cd06636         126 ICREILRGL-AHLHAHKVIHRDIKGQNVLLTEN--AEVKLVDFGVSAQLDR  173 (282)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEeeCcchhhhhc
Confidence            344455544 45578999999999999999865  7899999999887643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=93.43  E-value=0.1  Score=54.69  Aligned_cols=49  Identities=27%  Similarity=0.414  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..+++++. .+...|++|+|.+|.||+++.+  +.+.|.|||....+...
T Consensus       121 i~~~i~~~L~-~lH~~gi~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~~  169 (286)
T cd06614         121 VCREVLQGLE-YLHSQNVIHRDIKSDNILLSKD--GSVKLADFGFAAQLTKE  169 (286)
T ss_pred             HHHHHHHHHH-HHHhCCeeeCCCChhhEEEcCC--CCEEECccchhhhhccc
Confidence            4555555443 4567999999999999999864  89999999988766543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>PHA03209 serine/threonine kinase US3; Provisional

Probab=93.42  E-value=0.082  Score=57.68  Aligned_cols=46  Identities=11%  Similarity=0.187  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...
T Consensus       161 ~i~~qi~~a-L~~LH~~~ivHrDlkp~Nill~~~--~~~kl~DfG~a~~  206 (357)
T PHA03209        161 IIEKQILEG-LRYLHAQRIIHRDVKTENIFINDV--DQVCIGDLGAAQF  206 (357)
T ss_pred             HHHHHHHHH-HHHHHHCCeecCCCCHHHEEECCC--CCEEEecCccccc
Confidence            344455444 345678999999999999999864  7899999998864

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=93.37  E-value=0.095  Score=53.69  Aligned_cols=48  Identities=17%  Similarity=0.258  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       105 ~~~~l~~~l-~~lH~~~i~h~dl~p~ni~i~~~--~~~~l~d~g~~~~~~~  152 (256)
T cd05112         105 MCLDVCEGM-AYLESSNVIHRDLAARNCLVGEN--QVVKVSDFGMTRFVLD  152 (256)
T ss_pred             HHHHHHHHH-HHHHHCCccccccccceEEEcCC--CeEEECCCcceeeccc
Confidence            344444433 34578899999999999999754  7899999999876643

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=93.35  E-value=0.081  Score=57.53  Aligned_cols=47  Identities=23%  Similarity=0.445  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ +..+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       124 ~~ql~~a-L~~LH~~gi~H~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~~  170 (353)
T cd07850         124 LYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAGT  170 (353)
T ss_pred             HHHHHHH-HHHHHhCCeeeCCCCHHHEEECCC--CCEEEccCccceeCCC
Confidence            3444432 456678999999999999999865  8999999999987654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=93.35  E-value=0.087  Score=56.98  Aligned_cols=52  Identities=23%  Similarity=0.429  Sum_probs=41.5

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEec--ccccccCHHHHHHHHHHHHHHHhCCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDF--GLTKKLSSSMKQALAKMFFAAAEGDH   90 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDf--G~v~~l~~~~r~~l~~L~~a~~~~D~   90 (729)
                      ...+.|+|.|+|||++.++   .+.+|||  +.++...-+.=.-++.|+.+...++.
T Consensus       191 ~~~llHGDl~~gNi~~~~~---~~~~iD~e~~~~G~~~~Dlg~~ianL~l~~~~~~~  244 (370)
T TIGR01767       191 AETLLHGDLHSGSIFVSEH---ETKVIDPEFAFYGPIGFDIGQFIANLFLNALSRDG  244 (370)
T ss_pred             cceeeeccCCcccEEEcCC---CCEEEcCcccccCchHhhHHHHHHHHHHHHhCccc
Confidence            4577999999999999764   6889998  56777777777777888888776653

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=93.34  E-value=0.11  Score=54.05  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+..
T Consensus       114 ~~~qi~~~l-~~LH~~~i~H~di~p~nil~~~~--~~~kL~dfg~~~~~~~  161 (279)
T cd05057         114 WCVQIAKGM-SYLEEKRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLDV  161 (279)
T ss_pred             HHHHHHHHH-HHHHhCCEEecccCcceEEEcCC--CeEEECCCcccccccC
Confidence            334444433 45567999999999999999764  7899999999887753

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=93.34  E-value=0.16  Score=54.95  Aligned_cols=49  Identities=18%  Similarity=0.285  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. .-+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       177 ~~~~qi~~aL-~~lH~~~ivHrDikp~Nill~~~--~~vkL~DfG~a~~~~~  225 (337)
T cd05054         177 SYSFQVARGM-EFLASRKCIHRDLAARNILLSEN--NVVKICDFGLARDIYK  225 (337)
T ss_pred             HHHHHHHHHH-HHHHhCCeecCCCCcceEEEeCC--CcEEEeccccchhccc
Confidence            3444444443 34568899999999999999864  7899999999887653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=93.33  E-value=0.11  Score=53.05  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++.+. ..+...|++|+|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       106 ~~~~~l~~~l-~~lH~~~i~H~di~p~nil~~~~--~~~~l~df~~~~~~~  153 (257)
T cd08223         106 EWFVQIAMAL-QYLHEKHILHRDLKTQNVFLTRT--NIIKVGDLGIARVLE  153 (257)
T ss_pred             HHHHHHHHHH-HHHHhCCeeccCCCchhEEEecC--CcEEEecccceEEec
Confidence            3444455443 56789999999999999999764  899999999987764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=93.31  E-value=0.092  Score=55.72  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+  +.+.|.|||....+..
T Consensus       145 ~~~qi~~aL-~~lH~~gi~H~dlkp~Nill~~~--~~~kL~dfg~a~~~~~  192 (307)
T cd05098         145 CAYQVARGM-EYLASKKCIHRDLAARNVLVTED--NVMKIADFGLARDIHH  192 (307)
T ss_pred             HHHHHHHHH-HHHHHCCcccccccHHheEEcCC--CcEEECCCcccccccc
Confidence            344444433 55678999999999999999865  7999999999876653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=93.27  E-value=0.098  Score=56.44  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=28.9

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .+++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       123 ~~ivH~dlkp~Nili~~~--~~~kL~Dfg~~~~~~~  156 (333)
T cd06650         123 HKIMHRDVKPSNILVNSR--GEIKLCDFGVSGQLID  156 (333)
T ss_pred             CCEEecCCChhhEEEcCC--CCEEEeeCCcchhhhh
Confidence            479999999999999764  7899999998766543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=93.27  E-value=0.089  Score=62.60  Aligned_cols=48  Identities=31%  Similarity=0.461  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++.+ +..+...|++|+|.+|.||++..+  +.+.|.|||+.+...
T Consensus       108 ~i~~qil~a-L~yLH~~gIiHrDLKP~NILl~~~--g~vkL~DFGls~~~~  155 (669)
T cd05610         108 KYISEVALA-LDYLHRHGIIHRDLKPDNMLISNE--GHIKLTDFGLSKVTL  155 (669)
T ss_pred             HHHHHHHHH-HHHHHhCCEEeCCccHHHEEEcCC--CCEEEEeCCCCcccc
Confidence            344444443 455678999999999999999764  899999999987654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=93.26  E-value=0.1  Score=54.58  Aligned_cols=48  Identities=21%  Similarity=0.322  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+..
T Consensus       102 ~~~qi~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~~  149 (280)
T cd05608         102 YTAQIISGL-EHLHQRRIIYRDLKPENVLLDND--GNVRISDLGLAVELKD  149 (280)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEeeCccceecCC
Confidence            344444433 44578999999999999999764  8999999999877654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=93.24  E-value=0.087  Score=54.97  Aligned_cols=47  Identities=21%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. ..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       104 ~~~qi~~al-~~LH~~~i~H~dl~~~nil~~~~--~~~~l~dfg~~~~~~  150 (284)
T cd07839         104 FMFQLLKGL-AFCHSHNVLHRDLKPQNLLINKN--GELKLADFGLARAFG  150 (284)
T ss_pred             HHHHHHHHH-HHHHHCCEecCCCCHHHEEEcCC--CcEEECccchhhccC
Confidence            333444433 45568999999999999999865  899999999987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=93.23  E-value=0.11  Score=54.84  Aligned_cols=48  Identities=21%  Similarity=0.291  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. .-+...|+.|+|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       133 ~i~~~i~~al-~~lH~~~i~H~dlkp~Nill~~~--~~~kl~dfg~~~~~~  180 (295)
T cd05097         133 YMAVQIASGM-KYLASLNFVHRDLATRNCLVGNH--YTIKIADFGMSRNLY  180 (295)
T ss_pred             HHHHHHHHHH-HHHHhcCeeccccChhhEEEcCC--CcEEecccccccccc
Confidence            3455555554 34478999999999999999864  789999999987653

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=93.23  E-value=0.098  Score=54.04  Aligned_cols=48  Identities=25%  Similarity=0.380  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       118 ~~~~i~~aL-~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~~~  165 (273)
T cd05035         118 FMVDIALGM-EYLSNRNFIHRDLAARNCMLRED--MTVCVADFGLSKKIYS  165 (273)
T ss_pred             HHHHHHHHH-HHHHhCCeeccccchheEEECCC--CeEEECCccceeeccc
Confidence            344444443 56678999999999999999865  7999999999887643

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=93.22  E-value=0.084  Score=56.71  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  |++.|.|||+....
T Consensus       108 i~~qi~~aL-~~LH~~~ivH~dlkp~NIll~~~--~~~kL~Dfg~~~~~  153 (338)
T cd07859         108 FLYQLLRAL-KYIHTANVFHRDLKPKNILANAD--CKLKICDFGLARVA  153 (338)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CcEEEccCcccccc
Confidence            444444443 44578999999999999999864  89999999998764

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=93.21  E-value=0.096  Score=57.43  Aligned_cols=46  Identities=28%  Similarity=0.462  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+....
T Consensus       108 ~~~qi~~a-L~~LH~~~ivH~dlkp~Nili~~~--~~~kL~Dfg~a~~~  153 (372)
T cd07853         108 FLYQILRG-LKYLHSAGILHRDIKPGNLLVNSN--CVLKICDFGLARVE  153 (372)
T ss_pred             HHHHHHHH-HHHHHhCCeeCCCCChHHEEECCC--CCEEeccccceeec
Confidence            44444444 345578999999999999999864  89999999988754

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=93.18  E-value=0.1  Score=54.83  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|.|.+|.|++++.+  +.+.|.|||+...++.
T Consensus       107 ~~~ql~~~l-~~lH~~~iiH~dikp~Nili~~~--~~~kl~Dfg~~~~~~~  154 (285)
T cd05632         107 YAAEILCGL-EDLHRENTVYRDLKPENILLDDY--GHIRISDLGLAVKIPE  154 (285)
T ss_pred             HHHHHHHHH-HHHHhCCeeecCCCHHHEEECCC--CCEEEecCCcceecCC
Confidence            444444444 55678999999999999999764  7899999998876653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=93.18  E-value=0.14  Score=53.44  Aligned_cols=48  Identities=25%  Similarity=0.353  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|++|+|.+|.||+++.+  +++.+.|||+...+..
T Consensus       108 ~~~qi~~~L-~~LH~~~i~H~dlkp~nili~~~--~~~kl~dfg~~~~~~~  155 (282)
T cd06643         108 VCKQTLEAL-NYLHENKIIHRDLKAGNILFTLD--GDIKLADFGVSAKNTR  155 (282)
T ss_pred             HHHHHHHHH-HHHHHCCeeecCCCcccEEEccC--CCEEEccccccccccc
Confidence            444444443 45678999999999999999764  8999999998876543

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=93.15  E-value=0.1  Score=53.63  Aligned_cols=50  Identities=28%  Similarity=0.443  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..++.++ +.+...|++|+|.+|.||++..+  +.+.|.|||....+....
T Consensus        98 ~~~~i~~~l-~~lH~~~~~h~dl~~~nilv~~~--~~~~l~df~~~~~~~~~~  147 (262)
T cd05572          98 YIACVVLAF-EYLHNRGIIYRDLKPENLLLDSN--GYVKLVDFGFAKKLKSGQ  147 (262)
T ss_pred             HHHHHHHHH-HHHhhCCcccCCCCHHHEEEcCC--CCEEEeeCCcccccCccc
Confidence            333444433 56778999999999999999865  899999999999887653

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=93.15  E-value=0.086  Score=54.38  Aligned_cols=47  Identities=17%  Similarity=0.260  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +.+.|.|||....+.
T Consensus       107 ~~~qi~~~l-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~  153 (265)
T cd06631         107 YTKQILDGV-AYLHNNCVVHRDIKGNNVMLMPN--GIIKLIDFGCARRLA  153 (265)
T ss_pred             HHHHHHHHH-HHHHhCCcccCCcCHHhEEECCC--CeEEeccchhhHhhh
Confidence            344444433 34578899999999999999764  899999999877653

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=93.13  E-value=0.077  Score=60.15  Aligned_cols=80  Identities=16%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCcCCCCcHHHHH
Q 004807           34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAM  113 (729)
Q Consensus        34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~lG~~~~~~~~~~~~  113 (729)
                      +-+.|.+|||++|-|||+-.-...+|=+||||.--..++..- .|+       .-..-..-|++..+.+....|+=-+.-
T Consensus       305 L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vy-tYi-------QSRfYRAPEVILGlpY~~~IDmWSLGC  376 (586)
T KOG0667|consen  305 LHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVY-TYI-------QSRFYRAPEVILGLPYDTAIDMWSLGC  376 (586)
T ss_pred             HHhCCeeeccCChhheeeccCCcCceeEEecccccccCCcce-eee-------eccccccchhhccCCCCCccceeehhh
Confidence            348999999999999987643235799999999888777654 222       112333456666666654445444444


Q ss_pred             HHHHHHhh
Q 004807          114 EVSTLFFR  121 (729)
Q Consensus       114 ~~~~~~~~  121 (729)
                      -+++++.-
T Consensus       377 IlAEL~tG  384 (586)
T KOG0667|consen  377 ILAELFTG  384 (586)
T ss_pred             hHHhHhcC
Confidence            45555544

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=93.13  E-value=0.093  Score=56.46  Aligned_cols=48  Identities=29%  Similarity=0.458  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|+||+++.+  +.+.|.|||....+..
T Consensus       110 ~~~qi~~aL-~~LH~~givH~dlkp~Nili~~~--~~~kl~Dfg~a~~~~~  157 (332)
T cd07857         110 FIYQILCGL-KYIHSANVLHRDLKPGNLLVNAD--CELKICDFGLARGFSE  157 (332)
T ss_pred             HHHHHHHHH-HHHHhCCcccCCCCHHHeEEcCC--CCEEeCcCCCceeccc
Confidence            444444443 44578999999999999999865  8999999999987764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=93.12  E-value=0.1  Score=54.50  Aligned_cols=48  Identities=21%  Similarity=0.332  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       128 ~~~~~l~~al-~~lH~~~i~H~dlkp~Nil~~~~--~~~~L~dfg~~~~~~  175 (283)
T cd05048         128 HIAIQIAAGM-EYLSSHHFVHRDLAARNCLVGEG--LTVKISDFGLSRDIY  175 (283)
T ss_pred             HHHHHHHHHH-HHHHhCCeeccccccceEEEcCC--CcEEECCCcceeecc
Confidence            4555566555 55688999999999999999864  789999999987653

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=93.10  E-value=0.1  Score=54.48  Aligned_cols=48  Identities=19%  Similarity=0.308  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       129 i~~~i~~al-~~lH~~~i~H~dlkp~nili~~~--~~~kl~dfg~~~~~~~  176 (283)
T cd05090         129 IAIQIAAGM-EYLSSHFFVHKDLAARNILIGEQ--LHVKISDLGLSREIYS  176 (283)
T ss_pred             HHHHHHHHH-HHHHhcCeehhccccceEEEcCC--CcEEeccccccccccC
Confidence            455555543 56678999999999999999865  7899999999987643

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=93.06  E-value=0.12  Score=53.12  Aligned_cols=49  Identities=22%  Similarity=0.325  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. ..+...|++|+|.+|.|+++..+  +.+.|.|||....+..
T Consensus       106 ~~~~~l~~aL-~~lH~~~i~H~dl~p~ni~i~~~--~~~~l~d~~~~~~~~~  154 (260)
T cd05073         106 DFSAQIAEGM-AFIEQRNYIHRDLRAANILVSAS--LVCKIADFGLARVIED  154 (260)
T ss_pred             HHHHHHHHHH-HHHHhCCccccccCcceEEEcCC--CcEEECCCcceeeccC
Confidence            3455666555 45678999999999999999764  7999999999887653

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=93.06  E-value=0.12  Score=52.74  Aligned_cols=50  Identities=16%  Similarity=0.311  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+. ..+...|++|+|.+|.||++..+  +++.|.|||+...++..
T Consensus       107 ~~~~~l~~al-~~lh~~~i~h~~l~~~ni~~~~~--~~~kl~d~g~~~~~~~~  156 (256)
T cd08530         107 RIFIQLLRGL-QALHEQKILHRDLKSANILLVAN--DLVKIGDLGISKVLKKN  156 (256)
T ss_pred             HHHHHHHHHH-HHHhhCCcccCCCCcceEEEecC--CcEEEeeccchhhhccC
Confidence            3444555544 45678999999999999999864  78999999988776553

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=93.05  E-value=0.093  Score=55.11  Aligned_cols=48  Identities=21%  Similarity=0.318  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       131 ~i~~~i~~~l-~~LH~~~ivH~dikp~nill~~~--~~~kl~dfg~~~~~~  178 (290)
T cd05045         131 SFAWQISRGM-QYLAEMKLVHRDLAARNVLVAEG--RKMKISDFGLSRDVY  178 (290)
T ss_pred             HHHHHHHHHH-HHHHHCCeehhhhhhheEEEcCC--CcEEecccccccccc
Confidence            4455555544 55678999999999999999764  789999999987664

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=93.05  E-value=0.13  Score=53.45  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++.+. .-+...|++|+|.+|.||++..+  +++.|.|||....++..
T Consensus       110 ~~~~~~i~~al-~~LH~~~i~h~~l~~~nili~~~--~~~~l~dfg~~~~~~~~  160 (287)
T cd07838         110 KDLMRQLLRGV-DFLHSHRIVHRDLKPQNILVTSD--GQVKIADFGLARIYSFE  160 (287)
T ss_pred             HHHHHHHHHHH-HHHHHCCeeeccCChhhEEEccC--CCEEEeccCcceeccCC
Confidence            33555555544 45678999999999999999865  89999999998877543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=93.03  E-value=0.12  Score=54.80  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. .-+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       113 ~~~~qi~~~L-~~LH~~~ivH~dikp~Nill~~~--~~~kL~Dfg~~~~~~~  161 (303)
T cd05110         113 NWCVQIAKGM-MYLEERRLVHRDLAARNVLVKSP--NHVKITDFGLARLLEG  161 (303)
T ss_pred             HHHHHHHHHH-HHHhhcCeeccccccceeeecCC--CceEEccccccccccC
Confidence            3445555543 45678999999999999999764  7899999999987754

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=93.03  E-value=0.097  Score=52.50  Aligned_cols=50  Identities=28%  Similarity=0.462  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..+++++ ..+...|++|+|++|.||++..+  +.+.+.|||....+....
T Consensus        92 ~~~~l~~~l-~~lh~~~i~h~~i~~~ni~~~~~--~~~~l~d~~~~~~~~~~~  141 (244)
T smart00220       92 YARQILSAL-EYLHSNGIIHRDLKPENILLDED--GHVKLADFGLARQLDPGG  141 (244)
T ss_pred             HHHHHHHHH-HHHHHcCeecCCcCHHHeEECCC--CcEEEccccceeeecccc
Confidence            444444433 45678899999999999999864  899999999999987763

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=93.03  E-value=0.092  Score=55.51  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..++++ +.-+...|++|+|.+|+||+++.+  +.+.|.|||+.....
T Consensus       110 ~~qi~~a-L~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~~  155 (301)
T cd07873         110 LFQLLRG-LNYCHRRKVLHRDLKPQNLLINER--GELKLADFGLARAKS  155 (301)
T ss_pred             HHHHHHH-HHHHHhCCeeCCCCCHHHEEECCC--CcEEECcCcchhccC
Confidence            3344443 345568999999999999999865  799999999987543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>PRK10593 hypothetical protein; Provisional

Probab=93.01  E-value=0.081  Score=56.29  Aligned_cols=37  Identities=14%  Similarity=0.096  Sum_probs=27.9

Q ss_pred             cCccccCCCCCCeEEecCCCCC-eEEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHR-PILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~-lvllDfG~v~~l~~~~   74 (729)
                      ..+.|+|.||||++++.+ +++ +++||...|.--+.+.
T Consensus       193 psLlHGDlw~gNvl~~~~-~~~i~~liDPa~~~~g~rE~  230 (297)
T PRK10593        193 CVLVHGNFTLRSMLKDPR-SDQLLAMLNPGLMLWAPREY  230 (297)
T ss_pred             CeeEeCCCCcccEEECCC-CCceEEEECchHhCCCCHHH
Confidence            467999999999999864 245 7999998655444433

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=93.00  E-value=0.11  Score=56.25  Aligned_cols=48  Identities=27%  Similarity=0.438  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..+++++ .-+...|++|+|.+|.||+++.+  +.+.|.|||+.....
T Consensus       124 ~i~~qi~~aL-~~LH~~~ivH~dlkp~NIll~~~--~~~kl~dfg~~~~~~  171 (345)
T cd07877         124 FLIYQILRGL-KYIHSADIIHRDLKPSNLAVNED--CELKILDFGLARHTD  171 (345)
T ss_pred             HHHHHHHHHH-HHHHHCCeeecCCChHHEEEcCC--CCEEEeccccccccc
Confidence            3555555554 55678999999999999999865  899999999887654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=92.99  E-value=0.15  Score=53.30  Aligned_cols=48  Identities=21%  Similarity=0.337  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +.+.|.|||+...++.
T Consensus       112 i~~~l~~~l-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~~  159 (283)
T cd05080         112 FAQQICEGM-AYLHSQHYIHRDLAARNVLLDND--RLVKIGDFGLAKAVPE  159 (283)
T ss_pred             HHHHHHHHH-HHHHHCCeeccccChheEEEcCC--CcEEEeecccccccCC
Confidence            344444433 45578999999999999999764  7899999999877654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=92.98  E-value=0.056  Score=59.52  Aligned_cols=51  Identities=22%  Similarity=0.359  Sum_probs=42.0

Q ss_pred             HHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHH
Q 004807           27 TRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALA   79 (729)
Q Consensus        27 ~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~   79 (729)
                      +.+|++||+       ..|++|.|.+..|||++.  +|.|-|=|||+..-++.+.++.|.
T Consensus       220 IKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn--~G~LKiaDFGLAr~y~~~~~~~~T  277 (560)
T KOG0600|consen  220 IKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDN--NGVLKIADFGLARFYTPSGSAPYT  277 (560)
T ss_pred             HHHHHHHHHHHHHHHhhcCeeeccccccceEEcC--CCCEEeccccceeeccCCCCcccc
Confidence            455556655       789999999999999975  489999999999988888777654

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=92.97  E-value=0.11  Score=53.50  Aligned_cols=47  Identities=23%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. +.+...|++|+|.+|.|++++.+  +.+.|.|||+...+.
T Consensus       107 i~~~i~~al-~~LH~~~i~H~dl~p~ni~i~~~--~~~~l~dfg~~~~~~  153 (260)
T cd05067         107 MAAQIAEGM-AFIERKNYIHRDLRAANILVSET--LCCKIADFGLARLIE  153 (260)
T ss_pred             HHHHHHHHH-HHHhcCCeecccccHHhEEEcCC--CCEEEccCcceeecC
Confidence            344444443 56678999999999999999865  789999999998876

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=92.97  E-value=0.12  Score=54.18  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. .-+...|++|+|..|.||++..+  +.+.|.|||....+..
T Consensus       136 ~i~~qi~~al-~~LH~~~ivH~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~~  184 (293)
T cd05053         136 SFAYQVARGM-EFLASKKCIHRDLAARNVLVTED--HVMKIADFGLARDIHH  184 (293)
T ss_pred             HHHHHHHHHH-HHHHHCCccccccceeeEEEcCC--CeEEeCcccccccccc
Confidence            3455555444 45578999999999999999864  8999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=92.97  E-value=0.14  Score=58.46  Aligned_cols=38  Identities=26%  Similarity=0.468  Sum_probs=32.2

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       323 ~~lH~~~ivHrDLKp~NILl~~~--~~~kL~DFGla~~~~  360 (507)
T PLN03224        323 RKLHRIGIVHRDIKPENLLVTVD--GQVKIIDFGAAVDMC  360 (507)
T ss_pred             HHHHHCCeecCCCchHhEEECCC--CcEEEEeCcCccccc
Confidence            44678899999999999999865  799999999876543

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=92.95  E-value=0.14  Score=53.48  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++. .-+...|+.|+|.+|.||++..+  +++.|.|||+...+.+.
T Consensus       114 i~~qi~~~l-~~lH~~~iiH~dlkp~nili~~~--~~~kl~Dfg~~~~~~~~  162 (279)
T cd05111         114 WCVQIAKGM-YYLEEHRMVHRNLAARNILLKSD--SIVQIADFGVADLLYPD  162 (279)
T ss_pred             HHHHHHHHH-HHHHHCCEeccccCcceEEEcCC--CcEEEcCCccceeccCC
Confidence            444554443 34568899999999999999764  88999999999876543

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=92.93  E-value=0.11  Score=53.63  Aligned_cols=48  Identities=21%  Similarity=0.279  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..+++++ .-+...|++|+|.+|.||+++.+  +.+.+.|||+...+..
T Consensus       111 ~~~~i~~~l-~~LH~~~i~H~dl~p~nili~~~--~~~~l~dfg~~~~~~~  158 (267)
T cd08229         111 YFVQLCSAL-EHMHSRRVMHRDIKPANVFITAT--GVVKLGDLGLGRFFSS  158 (267)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CCEEECcchhhhcccc
Confidence            344444443 45678899999999999999764  8999999998876643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=92.93  E-value=0.1  Score=55.87  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...
T Consensus       100 ~~~~qi~~al-~~LH~~~ivHrdikp~Nil~~~~--~~~kl~Dfg~~~~  145 (316)
T cd05619         100 FYAAEIICGL-QFLHSKGIVYRDLKLDNILLDTD--GHIKIADFGMCKE  145 (316)
T ss_pred             HHHHHHHHHH-HHHHhCCeEeCCCCHHHEEECCC--CCEEEccCCcceE
Confidence            3455555543 55678999999999999999865  7999999998765

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=92.92  E-value=0.1  Score=53.85  Aligned_cols=48  Identities=23%  Similarity=0.236  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +++..++.+. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       110 ~~~~~l~~~l-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~Dfg~~~~~~  157 (265)
T cd06652         110 KYTRQILEGV-SYLHSNMIVHRDIKGANILRDSV--GNVKLGDFGASKRLQ  157 (265)
T ss_pred             HHHHHHHHHH-HHHHhCCEecCCCCHHHEEecCC--CCEEECcCccccccc
Confidence            3455555544 45578999999999999999864  899999999888664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=92.90  E-value=0.12  Score=54.36  Aligned_cols=49  Identities=22%  Similarity=0.307  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++.+. ..+...|++|+|..|.||++..+  +++.|.|||+...+.
T Consensus       133 ~~~~~~i~~al-~~lH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~  181 (296)
T cd05095         133 IFMATQIASGM-KYLSSLNFVHRDLATRNCLVGKN--YTIKIADFGMSRNLY  181 (296)
T ss_pred             HHHHHHHHHHH-HHHHHCCeecccCChheEEEcCC--CCEEeccCccccccc
Confidence            34445555444 56678999999999999999864  899999999987763

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=92.88  E-value=0.17  Score=52.43  Aligned_cols=51  Identities=22%  Similarity=0.386  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .+++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||....+...
T Consensus       101 ~~~~~~i~~~l-~~LH~~~i~H~~l~~~ni~~~~~--~~~~l~d~g~~~~~~~~  151 (282)
T cd07829         101 KSIMYQLLRGL-AYCHSHRILHRDLKPQNILINRD--GVLKLADFGLARAFGIP  151 (282)
T ss_pred             HHHHHHHHHHH-HHHHHCCcccCCCChheEEEcCC--CCEEEecCCcccccCCC
Confidence            34455555544 56778999999999999999864  89999999998876543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=92.85  E-value=0.11  Score=53.49  Aligned_cols=50  Identities=22%  Similarity=0.280  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++.. -+...|++|+|.+|.||++..+  +.+.|.|||+...++..
T Consensus       110 ~~~~~i~~~l~-~LH~~~i~H~dl~~~nil~~~~--~~~~l~d~g~~~~~~~~  159 (267)
T cd08228         110 KYFVQLCSAVE-HMHSRRVMHRDIKPANVFITAT--GVVKLGDLGLGRFFSSK  159 (267)
T ss_pred             HHHHHHHHHHH-HHhhCCeeCCCCCHHHEEEcCC--CCEEECccccceeccch
Confidence            44555555543 4578999999999999999765  78999999998887654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=92.85  E-value=0.15  Score=52.15  Aligned_cols=50  Identities=22%  Similarity=0.228  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCC-----CeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH-----RPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g-----~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+++.     .+.|.|||+...+..
T Consensus       106 ~~~~i~~~l-~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~  160 (259)
T cd05037         106 VAKQLASAL-HYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS  160 (259)
T ss_pred             HHHHHHHHH-HHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccccc
Confidence            344555443 45578899999999999999875211     699999999887644

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=92.84  E-value=0.083  Score=53.79  Aligned_cols=53  Identities=23%  Similarity=0.340  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH
Q 004807           24 EEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL   78 (729)
Q Consensus        24 ~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l   78 (729)
                      ..=+.+|+.|++       ....+|.|.+|-|+++..+  |.|-+=|||+.+-+....+..-
T Consensus       100 pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~--g~lKiADFGLAr~f~~p~~~~~  159 (318)
T KOG0659|consen  100 PADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSD--GQLKIADFGLARFFGSPNRIQT  159 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCC--CcEEeecccchhccCCCCcccc
Confidence            333566666655       6788999999999999975  8999999999999987666544

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=92.80  E-value=0.11  Score=54.30  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..++.+. ..+...|++|+|.+|.||++..+  +.+.+.|||....+
T Consensus       134 ~~~~~i~~aL-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~  180 (288)
T cd05050         134 CIAKQVAAGM-AYLSERKFVHRDLATRNCLVGEN--MVVKIADFGLSRNI  180 (288)
T ss_pred             HHHHHHHHHH-HHHHhCCeecccccHhheEecCC--CceEECccccceec
Confidence            4555555554 45678999999999999999764  89999999987655

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=92.77  E-value=0.14  Score=52.83  Aligned_cols=49  Identities=24%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..+++.. .-+...|++|+|.+|.||++..+  +.+.|.|||....+..
T Consensus       108 ~~~~ql~~~l-~~lH~~~i~H~dlkp~nil~~~~--~~~kl~df~~~~~~~~  156 (263)
T cd05052         108 YMATQISSAM-EYLEKKNFIHRDLAARNCLVGEN--HLVKVADFGLSRLMTG  156 (263)
T ss_pred             HHHHHHHHHH-HHHHhCCEeecccCcceEEEcCC--CcEEeCCCcccccccc
Confidence            3455555554 45578899999999999999764  8999999999887754

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=92.75  E-value=0.13  Score=53.98  Aligned_cols=47  Identities=17%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+. ..+...|++|+|..|.||+++.+  +.+.|.|||+...++.
T Consensus       108 ~~qi~~~l-~~lH~~~iiH~dikp~Nill~~~--~~~kl~Dfg~~~~~~~  154 (285)
T cd05631         108 AAELCCGL-EDLQRERIVYRDLKPENILLDDR--GHIRISDLGLAVQIPE  154 (285)
T ss_pred             HHHHHHHH-HHHHhCCEEeCCCCHHHEEECCC--CCEEEeeCCCcEEcCC
Confidence            33444333 44578999999999999999764  7899999999887653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=92.75  E-value=0.12  Score=56.09  Aligned_cols=51  Identities=31%  Similarity=0.472  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..+++++ ..+...|++|+|.+|.||+++.+  +++.|+|||+...+...
T Consensus       121 ~~~~~ql~~aL-~~LH~~gi~H~dlkp~Nill~~~--~~~kL~dfg~~~~~~~~  171 (343)
T cd07851         121 QFLVYQILRGL-KYIHSAGIIHRDLKPSNIAVNED--CELKILDFGLARHTDDE  171 (343)
T ss_pred             HHHHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CCEEEcccccccccccc
Confidence            33455555544 45678899999999999999864  89999999999877543

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=92.74  E-value=0.099  Score=53.71  Aligned_cols=51  Identities=20%  Similarity=0.278  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..+++++ .-+...|++|+|.+|.||+++.+  +.+.|.|||....+....
T Consensus       103 ~i~~~i~~~l-~~lh~~~i~H~dl~~~nil~~~~--~~~kl~d~g~~~~~~~~~  153 (264)
T cd06626         103 VYTLQLLEGL-AYLHSHGIVHRDIKPANIFLDHN--GVIKLGDFGCAVKLKNNT  153 (264)
T ss_pred             HHHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEcccccccccCCCC
Confidence            3455555555 34478999999999999999864  899999999998876543

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=92.72  E-value=0.13  Score=58.93  Aligned_cols=38  Identities=24%  Similarity=0.373  Sum_probs=32.9

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..+...|++|+|.+|.||+++.+  +.+.|.|||+.+.+.
T Consensus       157 ~~lH~~~IiHrDLKP~NILl~~~--~~vkL~DFGls~~~~  194 (496)
T PTZ00283        157 HHVHSKHMIHRDIKSANILLCSN--GLVKLGDFGFSKMYA  194 (496)
T ss_pred             HHHHhCCEecCCCCHHHEEEeCC--CCEEEEecccCeecc
Confidence            44678899999999999999864  899999999987664

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=92.71  E-value=0.15  Score=52.65  Aligned_cols=47  Identities=21%  Similarity=0.282  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..++++. ..+...|++|+|.+|.||+++.+ ++++.|.|||+...+.
T Consensus       114 ~~qi~~al-~~lH~~~i~h~dl~p~nil~~~~-~~~~~l~dfg~~~~~~  160 (268)
T cd06624         114 TKQILEGL-KYLHDNQIVHRDIKGDNVLVNTY-SGVVKISDFGTSKRLA  160 (268)
T ss_pred             HHHHHHHH-HHHHHCCEeecCCCHHHEEEcCC-CCeEEEecchhheecc
Confidence            33444433 34568999999999999999764 4789999999987764

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=92.70  E-value=0.16  Score=52.08  Aligned_cols=50  Identities=20%  Similarity=0.307  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.+. .-+...|+.|+|.+|.|+++..+  +.+.+.|||....+..
T Consensus       103 ~~~~~~i~~~l-~~lH~~~i~H~dl~p~ni~i~~~--~~~kl~d~g~~~~~~~  152 (256)
T cd05114         103 LSMCQDVCEGM-EYLERNSFIHRDLAARNCLVSST--GVVKVSDFGMTRYVLD  152 (256)
T ss_pred             HHHHHHHHHHH-HHHHHCCccccccCcceEEEcCC--CeEEECCCCCccccCC
Confidence            34455555444 45678999999999999999764  7899999998877643

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=92.69  E-value=0.091  Score=52.73  Aligned_cols=40  Identities=33%  Similarity=0.565  Sum_probs=31.2

Q ss_pred             HHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccC
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLS   71 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~   71 (729)
                      +-+...+|+|.|.+|.||+.--+- ..++-|||||+.+.+-
T Consensus       125 EyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~  165 (341)
T KOG1163|consen  125 EYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYR  165 (341)
T ss_pred             HHHHhhccccccCCccceeeccccccceEEEEeccchhhhc
Confidence            445689999999999999975320 2479999999988753

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=92.68  E-value=0.17  Score=51.40  Aligned_cols=48  Identities=38%  Similarity=0.464  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++.+. ..+...|++|+|.+|.||++..+  +++.|.|||+...+...
T Consensus        99 ~~qi~~~l-~~lh~~~~~H~~l~p~ni~~~~~--~~~~l~d~~~~~~~~~~  146 (250)
T cd05123          99 AAEIVLAL-EYLHSLGIIYRDLKPENILLDAD--GHIKLTDFGLAKELSSE  146 (250)
T ss_pred             HHHHHHHH-HHHHHCCceecCCCcceEEEcCC--CcEEEeecCcceecccC
Confidence            33444433 45568999999999999999865  79999999999877554

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=92.68  E-value=0.16  Score=52.22  Aligned_cols=48  Identities=15%  Similarity=0.293  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       103 ~~~~i~~~l-~~lH~~~i~H~dlk~~nili~~~--~~~kl~dfg~~~~~~~  150 (262)
T cd05058         103 FGLQVAKGM-EYLASKKFVHRDLAARNCMLDES--FTVKVADFGLARDIYD  150 (262)
T ss_pred             HHHHHHHHH-HHHHhCCccccccCcceEEEcCC--CcEEECCccccccccC
Confidence            344444443 34568899999999999999864  7899999999876654

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=92.67  E-value=0.12  Score=53.79  Aligned_cols=52  Identities=21%  Similarity=0.392  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..+++++ .-+...|++|+|.||.||++..+  +.+.|.|||....+....
T Consensus       101 ~~~~~~i~~~l-~~LH~~~i~H~dl~p~nili~~~--~~~~l~df~~~~~~~~~~  152 (283)
T cd05118         101 KSYLYQLLQGL-AFCHSHGILHRDLKPENLLINTE--GVLKLADFGLARSFGSPV  152 (283)
T ss_pred             HHHHHHHHHHH-HHHHHCCeeecCcCHHHEEECCC--CcEEEeeeeeeEecCCCc
Confidence            44566666655 56678999999999999999864  789999999998887654

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=92.66  E-value=0.13  Score=53.65  Aligned_cols=47  Identities=19%  Similarity=0.327  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||....+.
T Consensus       105 ~~~~i~~~l-~~lh~~~i~H~~l~p~nill~~~--~~~~l~dfg~~~~~~  151 (284)
T cd07860         105 YLFQLLQGL-AFCHSHRVLHRDLKPQNLLINTE--GAIKLADFGLARAFG  151 (284)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCCHHHEEECCC--CCEEEeeccchhhcc
Confidence            344444433 44568999999999999999865  899999999876554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=92.62  E-value=0.12  Score=53.56  Aligned_cols=51  Identities=24%  Similarity=0.385  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++.+. .-+...|++|+|.+|.|+++..+  +.+.|.|||....+...
T Consensus       101 ~~~~~ql~~~l-~~lh~~~i~h~dl~p~ni~i~~~--~~~~l~d~g~~~~~~~~  151 (274)
T cd06609         101 AFILREVLLGL-EYLHEEGKIHRDIKAANILLSEE--GDVKLADFGVSGQLTST  151 (274)
T ss_pred             HHHHHHHHHHH-HHHHhCCcccCCCCHHHEEECCC--CCEEEcccccceeeccc
Confidence            33444555544 34678899999999999999864  89999999999888764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=92.62  E-value=0.12  Score=53.76  Aligned_cols=48  Identities=23%  Similarity=0.369  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++.++ .-+...|++|+|.+|+||++..+  +.+.+.|||+...+...
T Consensus       107 ~~~l~~~l-~~lh~~~i~h~dl~p~Ni~i~~~--~~~~l~dfg~~~~~~~~  154 (277)
T cd06641         107 LREILKGL-DYLHSEKKIHRDIKAANVLLSEH--GEVKLADFGVAGQLTDT  154 (277)
T ss_pred             HHHHHHHH-HHHccCCeecCCCCHHhEEECCC--CCEEEeecccceecccc
Confidence            33333333 44568999999999999999764  88999999998877653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=92.62  E-value=0.16  Score=53.22  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. ..+...|++|+|.+|.||+++.+ ++.+.|.|||+...+.
T Consensus       115 ~~~qi~~~L-~~LH~~~i~H~dl~~~nil~~~~-~~~~kl~dfg~~~~~~  162 (295)
T cd07837         115 FMYQLLKGV-AHCHKHGVMHRDLKPQNLLVDKQ-KGLLKIADLGLGRAFS  162 (295)
T ss_pred             HHHHHHHHH-HHHHHCCeeecCCChHHEEEecC-CCeEEEeecccceecC
Confidence            344444433 45578999999999999999873 4789999999987664

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=92.61  E-value=0.18  Score=55.45  Aligned_cols=49  Identities=14%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       218 ~~~~qi~~~l-~~lH~~~ivH~Dlkp~Nill~~~--~~~kl~DfG~a~~~~~  266 (375)
T cd05104         218 SFSYQVAKGM-SFLASKNCIHRDLAARNILLTHG--RITKICDFGLARDIRN  266 (375)
T ss_pred             HHHHHHHHHH-HHHHHCCeeccCCchhhEEEECC--CcEEEecCccceeccC
Confidence            3445555444 45578999999999999999864  6889999999887654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=92.55  E-value=0.13  Score=54.21  Aligned_cols=48  Identities=25%  Similarity=0.426  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+.. -+.. .|++|+|.+|.||+++.  ++.+.|.|||+...+..
T Consensus       119 i~~~i~~~l~-~lH~~~~i~H~dl~p~nill~~--~~~~kL~dfg~~~~~~~  167 (296)
T cd06618         119 MTVAIVKALH-YLKEKHGVIHRDVKPSNILLDA--SGNVKLCDFGISGRLVD  167 (296)
T ss_pred             HHHHHHHHHH-HHHhhCCEecCCCcHHHEEEcC--CCCEEECccccchhccC
Confidence            4444444442 2233 59999999999999975  48999999999877653

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=92.53  E-value=0.12  Score=53.34  Aligned_cols=48  Identities=19%  Similarity=0.250  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++.+. .-+...|++|.|.+|+||+++.+  +.+.+.|||....+.
T Consensus       110 ~~~~~i~~al-~~LH~~~i~H~dl~p~ni~i~~~--~~~~l~dfg~~~~~~  157 (264)
T cd06653         110 RYTRQILQGV-SYLHSNMIVHRDIKGANILRDSA--GNVKLGDFGASKRIQ  157 (264)
T ss_pred             HHHHHHHHHH-HHHHhCCEecCCCCHHHEEEcCC--CCEEECccccccccc
Confidence            3455555544 45578999999999999999754  889999999988764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=92.53  E-value=0.13  Score=53.63  Aligned_cols=47  Identities=21%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       105 ~~~qi~~~l-~~lH~~~i~h~dl~p~ni~~~~~--~~~~l~d~g~~~~~~  151 (284)
T cd07836         105 FTYQLLKGI-AFCHENRVLHRDLKPQNLLINKR--GELKLADFGLARAFG  151 (284)
T ss_pred             HHHHHHHHH-HHHHHCCeeeCCCCHHHEEECCC--CcEEEeecchhhhhc
Confidence            444455444 45578899999999999999864  899999999987654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=92.47  E-value=0.12  Score=54.59  Aligned_cols=48  Identities=15%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|++|+|.+|+||++..+  +.+.|.|||+...+..
T Consensus       120 i~~~l~~al-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~  167 (311)
T cd07866         120 YMLQLLEGI-NYLHENHILHRDIKAANILIDNQ--GILKIADFGLARPYDG  167 (311)
T ss_pred             HHHHHHHHH-HHHHhCCeecCCCCHHHEEECCC--CCEEECcCccchhccC
Confidence            444444433 44578999999999999999865  8999999999987654

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=92.47  E-value=0.19  Score=52.85  Aligned_cols=48  Identities=23%  Similarity=0.375  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+ ++++.+.|||+...+.
T Consensus       107 ~~~qi~~aL-~~LH~~~i~H~dl~p~nill~~~-~~~~kl~dfg~~~~~~  154 (294)
T PLN00009        107 YLYQILRGI-AYCHSHRVLHRDLKPQNLLIDRR-TNALKLADFGLARAFG  154 (294)
T ss_pred             HHHHHHHHH-HHHHhCCeeCCCCCcceEEEECC-CCEEEEcccccccccC
Confidence            444555444 56678999999999999999864 3678999999987654

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=92.46  E-value=0.15  Score=53.08  Aligned_cols=50  Identities=24%  Similarity=0.309  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..++.++ ..+...|++|+|.+|.||++..+  +.+-|.|||....+....
T Consensus       105 ~~~~i~~~l-~~LH~~~i~H~dl~~~ni~~~~~--~~~kl~d~g~~~~~~~~~  154 (288)
T cd07833         105 YIWQLLQAI-AYCHSHNIIHRDIKPENILVSES--GVLKLCDFGFARALRARP  154 (288)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CCEEEEeeecccccCCCc
Confidence            444444443 45578999999999999999864  899999999988876654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.44  E-value=0.16  Score=61.45  Aligned_cols=46  Identities=20%  Similarity=0.325  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  |++.++|||+...+
T Consensus       118 I~~QIa~AL-~yLHs~GIIHRDLKPeNILLd~d--g~vKLiDFGLAk~i  163 (932)
T PRK13184        118 IFHKICATI-EYVHSKGVLHRDLKPDNILLGLF--GEVVILDWGAAIFK  163 (932)
T ss_pred             HHHHHHHHH-HHHHHCCccccCCchheEEEcCC--CCEEEEecCcceec
Confidence            344444433 45678899999999999999865  89999999999877

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=92.43  E-value=0.15  Score=52.38  Aligned_cols=48  Identities=23%  Similarity=0.344  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|..|.||++..+  +.+.|.|||....+..
T Consensus       108 ~~~~l~~~l-~~LH~~~i~H~dl~p~nili~~~--~~~~l~dfg~~~~~~~  155 (261)
T cd05072         108 FSAQIAEGM-AYIERKNYIHRDLRAANVLVSES--LMCKIADFGLARVIED  155 (261)
T ss_pred             HHHHHHHHH-HHHHHCCeeccccchhhEEecCC--CcEEECCCccceecCC
Confidence            444454444 45678999999999999999864  8899999999988754

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=92.43  E-value=0.16  Score=53.37  Aligned_cols=48  Identities=23%  Similarity=0.387  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +++..++++. ..+...|+.|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       123 ~~~~~l~~~l-~~lH~~~i~H~dikp~nili~~~--~~~~L~Dfg~~~~~~  170 (288)
T cd05061         123 QMAAEIADGM-AYLNAKKFVHRDLAARNCMVAHD--FTVKIGDFGMTRDIY  170 (288)
T ss_pred             HHHHHHHHHH-HHHHhCCCcCCCCChheEEEcCC--CcEEECcCCcccccc
Confidence            3455555544 45578999999999999999864  899999999987654

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=92.42  E-value=0.11  Score=54.67  Aligned_cols=49  Identities=27%  Similarity=0.394  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++..+ .-+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       122 ~~~~qi~~~l-~~LH~~~ivH~dlkp~Nill~~~--~~~kL~dfg~~~~~~~  170 (292)
T cd06658         122 TVCLSVLRAL-SYLHNQGVIHRDIKSDSILLTSD--GRIKLSDFGFCAQVSK  170 (292)
T ss_pred             HHHHHHHHHH-HHHHHCCEeecCCCHHHEEEcCC--CCEEEccCcchhhccc
Confidence            3444444443 45578899999999999999765  8999999998876543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=92.41  E-value=0.16  Score=52.17  Aligned_cols=48  Identities=23%  Similarity=0.401  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||....+...
T Consensus       106 ~~~i~~~-l~~lh~~~i~h~dl~~~nil~~~~--~~~~l~d~~~~~~~~~~  153 (258)
T cd05578         106 ICEIVLA-LEYLHSKGIIHRDIKPDNILLDEQ--GHVHITDFNIATKVTPD  153 (258)
T ss_pred             HHHHHHH-HHHHHhCCeeccCCCHHHeEEcCC--CCEEEeecccccccCCC
Confidence            3334443 346678999999999999999865  89999999998877654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=92.41  E-value=0.17  Score=52.85  Aligned_cols=49  Identities=27%  Similarity=0.366  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       105 ~~~~i~~~l-~~LH~~~i~h~~l~p~ni~~~~~--~~~~l~dfg~~~~~~~~  153 (286)
T cd07846         105 YLFQILRGI-EFCHSHNIIHRDIKPENILVSQS--GVVKLCDFGFARTLAAP  153 (286)
T ss_pred             HHHHHHHHH-HHHHHCCccccCCCHHHEEECCC--CcEEEEeeeeeeeccCC
Confidence            344444433 34568999999999999999865  89999999998876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=92.40  E-value=0.16  Score=52.66  Aligned_cols=49  Identities=27%  Similarity=0.297  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..+++++ .-+...|++|+|.+|.||++..+  +.+.|.|||....+...
T Consensus       112 ~~~~l~~~l-~~lH~~~~~H~dl~p~nili~~~--~~~~l~d~g~~~~~~~~  160 (270)
T cd05056         112 YSYQLSTAL-AYLESKRFVHRDIAARNVLVSSP--DCVKLGDFGLSRYLEDE  160 (270)
T ss_pred             HHHHHHHHH-HHHHhCCeeccccChheEEEecC--CCeEEccCceeeecccc
Confidence            455555555 45578999999999999999864  78999999998877654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=92.39  E-value=0.12  Score=53.00  Aligned_cols=49  Identities=24%  Similarity=0.481  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++++  +.+.|.|||+...+...
T Consensus       107 ~~~ql~~al-~~lh~~~i~h~~l~p~ni~~~~~--~~~~l~df~~~~~~~~~  155 (267)
T cd06610         107 VLKEVLKGL-EYLHSNGQIHRDIKAGNILLGED--GSVKIADFGVSASLADG  155 (267)
T ss_pred             HHHHHHHHH-HHHHhCCeecCCCCHHhEEEcCC--CCEEEcccchHHHhccC
Confidence            344455444 45579999999999999999864  78999999998777654

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=92.39  E-value=0.14  Score=54.39  Aligned_cols=50  Identities=22%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  .++++.|.|||+.+.+..
T Consensus       113 i~~qi~~aL-~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~  164 (317)
T cd07867         113 LLYQILDGI-HYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  164 (317)
T ss_pred             HHHHHHHHH-HHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCC
Confidence            444444433 34568899999999999999532  247899999999987653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=92.36  E-value=0.2  Score=54.21  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  +.+.+.|||+...+.
T Consensus       184 ~~~qi~~al-~~lH~~~i~H~dikp~Nil~~~~--~~~kl~dfg~~~~~~  230 (343)
T cd05103         184 YSFQVAKGM-EFLASRKCIHRDLAARNILLSEN--NVVKICDFGLARDIY  230 (343)
T ss_pred             HHHHHHHHH-HHHHhCCeecCCCccCeEEEcCC--CcEEEEecccccccc
Confidence            444555544 34578899999999999999864  799999999987753

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=92.36  E-value=0.16  Score=53.42  Aligned_cols=50  Identities=24%  Similarity=0.368  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++.. -+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       105 ~~~~~qi~~al~-~lH~~~i~H~dl~p~nill~~~--~~~~l~dfg~~~~~~~  154 (298)
T cd07841         105 KSYMLMTLRGLE-YLHSNWILHRDLKPNNLLIASD--GVLKLADFGLARSFGS  154 (298)
T ss_pred             HHHHHHHHHHHH-HHHhCCeeecCCChhhEEEcCC--CCEEEccceeeeeccC
Confidence            345555555543 4578999999999999999864  8999999999887654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=92.34  E-value=0.18  Score=53.54  Aligned_cols=47  Identities=21%  Similarity=0.386  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ..++..++++. .-+...|++|+|..|.|++++.+  +++.|.|||+...
T Consensus       127 ~~~~~qi~~al-~~LH~~gi~H~dlkp~Nili~~~--~~~kl~dfg~~~~  173 (303)
T cd05088         127 LHFAADVARGM-DYLSQKQFIHRDLAARNILVGEN--YVAKIADFGLSRG  173 (303)
T ss_pred             HHHHHHHHHHH-HHHHhCCccccccchheEEecCC--CcEEeCccccCcc
Confidence            34455555544 45578999999999999999865  7999999998754

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=92.32  E-value=0.16  Score=53.25  Aligned_cols=47  Identities=21%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +.+.|.|||+...++
T Consensus       107 ~~~qi~~~l-~~lH~~~ivH~dlkp~Nil~~~~--~~~~l~Dfg~~~~~~  153 (285)
T cd05605         107 YAAEITCGL-EDLHRERIVYRDLKPENILLDDY--GHIRISDLGLAVEIP  153 (285)
T ss_pred             HHHHHHHHH-HHHHHCCcEecCCCHHHEEECCC--CCEEEeeCCCceecC
Confidence            344444443 45678999999999999999764  789999999988764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=92.29  E-value=0.15  Score=53.43  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  +++.|.|||+...++
T Consensus       107 ~~~qi~~~l-~~lH~~~iiH~dikp~Nil~~~~--~~~~l~Dfg~~~~~~  153 (285)
T cd05630         107 YAAEICCGL-EDLHQERIVYRDLKPENILLDDH--GHIRISDLGLAVHVP  153 (285)
T ss_pred             HHHHHHHHH-HHHHhCCEEeCCCCHHHEEECCC--CCEEEeeccceeecC
Confidence            334444433 44568999999999999999764  789999999887654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=92.27  E-value=0.12  Score=53.83  Aligned_cols=50  Identities=26%  Similarity=0.366  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..++++. ..+...|++|+|..|.||++..+  +.+.|.|||....+....
T Consensus       106 i~~~i~~~l-~~lh~~~i~H~dl~p~ni~i~~~--~~~~l~dfg~~~~~~~~~  155 (277)
T cd06917         106 IIREVLVAL-KYIHKVGVIHRDIKAANILVTNT--GNVKLCDFGVAALLNQNS  155 (277)
T ss_pred             HHHHHHHHH-HHHHhCCcccCCcCHHHEEEcCC--CCEEEccCCceeecCCCc
Confidence            344444443 56678999999999999999864  899999999988776543

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=92.27  E-value=0.14  Score=54.48  Aligned_cols=49  Identities=20%  Similarity=0.358  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||++..+  .++++.|.|||+...++
T Consensus       113 i~~qi~~al-~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~  163 (317)
T cd07868         113 LLYQILDGI-HYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFN  163 (317)
T ss_pred             HHHHHHHHH-HHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccC
Confidence            344444433 34468899999999999999532  24789999999987664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=92.26  E-value=0.13  Score=54.57  Aligned_cols=48  Identities=17%  Similarity=0.277  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|++|+|.+|+||+++.+  +++.|.|||+...+..
T Consensus       113 ~~~qi~~~l-~~lH~~~i~H~dl~p~nil~~~~--~~~kL~dfg~~~~~~~  160 (309)
T cd07845         113 LMLQLLRGL-QYLHENFIIHRDLKVSNLLLTDK--GCLKIADFGLARTYGL  160 (309)
T ss_pred             HHHHHHHHH-HHHHhCCeecCCCCHHHEEECCC--CCEEECccceeeecCC
Confidence            344444433 45668999999999999999864  8999999999987754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=92.25  E-value=0.15  Score=53.28  Aligned_cols=50  Identities=20%  Similarity=0.228  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. ..+...|++|+|..|.||+++.+  +++.|.|||+...+..
T Consensus       100 ~~~~~ql~~~l-~~lH~~~i~H~di~p~nili~~~--~~~kl~dfg~~~~~~~  149 (278)
T cd05606         100 RFYAAEIILGL-EHMHNRFVVYRDLKPANILLDEH--GHVRISDLGLACDFSK  149 (278)
T ss_pred             HHHHHHHHHHH-HHHHHCCEEcCCCCHHHEEECCC--CCEEEccCcCccccCc
Confidence            33445555443 45578899999999999999864  7999999999876653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=92.21  E-value=0.18  Score=52.00  Aligned_cols=50  Identities=20%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC---CCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP---PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~---~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.++ .-+...|++|+|.+|.||+++.+.   ...+.|.|||++..+..
T Consensus       111 ~~~~l~~~l-~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~  163 (269)
T cd05044         111 ICLDVAKGC-VYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYK  163 (269)
T ss_pred             HHHHHHHHH-HHHHhCCcccCCCChheEEEecCCCCCCcceEECCccccccccc
Confidence            344444433 345688999999999999998751   12799999999987643

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=92.21  E-value=0.19  Score=51.51  Aligned_cols=50  Identities=18%  Similarity=0.394  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||....+..
T Consensus        98 ~~~~~qi~~~l-~~lh~~~i~H~di~p~nili~~~--~~~kl~df~~~~~~~~  147 (257)
T cd05060          98 KELAHQVAMGM-AYLESKHFVHRDLAARNVLLVNR--HQAKISDFGMSRALGA  147 (257)
T ss_pred             HHHHHHHHHHH-HHHhhcCeeccCcccceEEEcCC--CcEEeccccccceeec
Confidence            44555555554 34478999999999999999764  8999999999887753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=92.19  E-value=0.14  Score=54.78  Aligned_cols=46  Identities=22%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...
T Consensus       100 ~~~~qi~~~l-~~LH~~~ivH~dlkp~Nill~~~--~~~kl~Dfg~~~~  145 (318)
T cd05570         100 FYAAEIVLGL-QFLHERGIIYRDLKLDNVLLDSE--GHIKIADFGMCKE  145 (318)
T ss_pred             HHHHHHHHHH-HHHHhCCeEccCCCHHHeEECCC--CcEEecccCCCee
Confidence            3445555544 34578999999999999999865  8999999998764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=92.14  E-value=0.17  Score=52.71  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             HHc-CccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           35 YVD-GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        35 f~~-GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ... |++|+|.+|.||+++.+  +++.+.|||+...+..
T Consensus       120 H~~~~i~h~dlkp~nil~~~~--~~~kl~dfg~~~~~~~  156 (283)
T cd06617         120 HSKLSVIHRDVKPSNVLINRN--GQVKLCDFGISGYLVD  156 (283)
T ss_pred             hhcCCeecCCCCHHHEEECCC--CCEEEeeccccccccc
Confidence            444 99999999999999865  8999999999877654

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=92.11  E-value=0.19  Score=52.81  Aligned_cols=49  Identities=18%  Similarity=0.280  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++.+. ..+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       126 ~~i~~~i~~al-~~lH~~~i~H~dlkp~Nil~~~~--~~~~l~dfg~a~~~~  174 (291)
T cd05094         126 LHIASQIASGM-VYLASQHFVHRDLATRNCLVGAN--LLVKIGDFGMSRDVY  174 (291)
T ss_pred             HHHHHHHHHHH-HHHHhCCeeecccCcceEEEccC--CcEEECCCCcccccC
Confidence            44555566555 45679999999999999999864  799999999887654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=92.09  E-value=0.15  Score=52.67  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|.|.+|.||++..+  +++.|.|||+...+..
T Consensus       111 ~~~~i~~~l-~~lH~~~i~H~dlkp~nili~~~--~~~~l~dfg~~~~~~~  158 (267)
T cd06645         111 VSRETLQGL-YYLHSKGKMHRDIKGANILLTDN--GHVKLADFGVSAQITA  158 (267)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCCHHHEEECCC--CCEEECcceeeeEccC
Confidence            344444444 44578899999999999999764  7899999999877653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=92.07  E-value=0.18  Score=51.45  Aligned_cols=49  Identities=20%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..+++++ .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       107 ~~~~i~~~l-~~lH~~~i~H~dl~~~ni~~~~~--~~~kl~d~~~~~~~~~~  155 (258)
T cd06632         107 YTRQILLGL-EYLHDRNTVHRDIKGANILVDTN--GVVKLADFGMAKQVVEF  155 (258)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCCHHHEEECCC--CCEEEccCccceecccc
Confidence            444555544 34578999999999999999865  89999999998877554

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=92.07  E-value=0.21  Score=52.70  Aligned_cols=45  Identities=20%  Similarity=0.386  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++++. ..+...|++|+|.+|.||++..+  +.+.|.|||+...
T Consensus       124 i~~qi~~al-~~lH~~~ivH~dlkp~Nill~~~--~~~kl~dfg~~~~  168 (297)
T cd05089         124 FASDVATGM-QYLSEKQFIHRDLAARNVLVGEN--LASKIADFGLSRG  168 (297)
T ss_pred             HHHHHHHHH-HHHHHCCcccCcCCcceEEECCC--CeEEECCcCCCcc
Confidence            444444443 56678999999999999999764  7899999998753

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=92.05  E-value=0.2  Score=51.98  Aligned_cols=49  Identities=20%  Similarity=0.388  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|.|.+|.||++..+ ++++.+.|||+...++.
T Consensus       114 ~~~qi~~~-l~~lH~~~i~H~dl~p~nil~~~~-~~~~~l~dfg~~~~~~~  162 (267)
T PHA03390        114 IIRQLVEA-LNDLHKHNIIHNDIKLENVLYDRA-KDRIYLCDYGLCKIIGT  162 (267)
T ss_pred             HHHHHHHH-HHHHHhCCeeeCCCCHHHEEEeCC-CCeEEEecCccceecCC
Confidence            33344443 356678999999999999999875 23899999999887654

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=92.04  E-value=0.18  Score=52.30  Aligned_cols=47  Identities=21%  Similarity=0.315  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..++.+. ..+...|++|.|..|.||+++.+  +.+.|.|||+...+
T Consensus       126 ~~~~~i~~~l-~~lH~~~i~h~dlkp~nili~~~--~~~kl~d~g~~~~~  172 (280)
T cd05049         126 QIAVQIASGM-VYLASQHFVHRDLATRNCLVGYD--LVVKIGDFGMSRDV  172 (280)
T ss_pred             HHHHHHHHHH-HHHhhCCeeccccccceEEEcCC--CeEEECCcccceec
Confidence            3455555544 55678899999999999999875  89999999998754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=92.03  E-value=0.19  Score=53.50  Aligned_cols=33  Identities=30%  Similarity=0.481  Sum_probs=28.9

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .|++|+|.+|.||+++.+  +.+.+.|||+.+.+.
T Consensus       119 ~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~  151 (308)
T cd06615         119 HKIMHRDVKPSNILVNSR--GEIKLCDFGVSGQLI  151 (308)
T ss_pred             CCEEECCCChHHEEEecC--CcEEEccCCCccccc
Confidence            589999999999999864  889999999877654

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=92.02  E-value=0.14  Score=55.05  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. +-+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       124 ~~~ql~~aL-~~LH~~~i~H~dl~~~nill~~~--~~~kl~dfg~~~~~~  170 (335)
T PTZ00024        124 ILLQILNGL-NVLHKWYFMHRDLSPANIFINSK--GICKIADFGLARRYG  170 (335)
T ss_pred             HHHHHHHHH-HHHHhCCeecccccHHHeEECCC--CCEEECCccceeecc
Confidence            444444433 45568999999999999999864  789999999998765

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=92.01  E-value=0.16  Score=51.60  Aligned_cols=48  Identities=19%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. ..+...|+.|+|.+|.|++++.+  +.+.++|||....+.
T Consensus        89 ~~~~ql~~~l-~~lH~~~i~H~dlkp~Nil~~~~--~~~~l~df~~~~~~~  136 (237)
T cd05576          89 RWAAEMVVAL-DALHREGIVCRDLNPNNILLDDR--GHIQLTYFSRWSEVE  136 (237)
T ss_pred             HHHHHHHHHH-HHHHhCCeeccCCCHHHEEEcCC--CCEEEecccchhccc
Confidence            3444445443 45678999999999999999865  789999999775543

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=91.99  E-value=0.17  Score=51.71  Aligned_cols=51  Identities=27%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..+++.+ ..+...|++|+|.+|.||+++.+  +.+-+.|||....+....
T Consensus       105 ~~~~~l~~~l-~~lh~~~i~h~dl~p~ni~~~~~--~~~kl~d~~~~~~~~~~~  155 (256)
T cd08221         105 WYLFQIVSAV-SYIHKAGILHRDIKTLNIFLTKA--GLIKLGDFGISKILGSEY  155 (256)
T ss_pred             HHHHHHHHHH-HHHHhCCccccCCChHhEEEeCC--CCEEECcCcceEEccccc
Confidence            3444455544 45578999999999999999865  789999999887765543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=91.95  E-value=0.2  Score=51.93  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..+++++ .-+...|++|+|.+|.|+++..+  +.+.|.|||+....
T Consensus       104 ~~~~qi~~al-~~lH~~~i~H~dlkp~nil~~~~--~~~kL~dfg~~~~~  150 (269)
T cd05087         104 RMACEIALGL-LHLHKNNFIHSDLALRNCLLTAD--LTVKIGDYGLSHNK  150 (269)
T ss_pred             HHHHHHHHHH-HHHHHCCEeccccCcceEEEcCC--CcEEECCccccccc
Confidence            3455555554 34578899999999999999864  78999999987644

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=91.94  E-value=0.18  Score=52.68  Aligned_cols=34  Identities=29%  Similarity=0.495  Sum_probs=29.7

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       122 ~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~~  155 (286)
T cd06622         122 HNIIHRDVKPTNVLVNGN--GQVKLCDFGVSGNLVA  155 (286)
T ss_pred             CCEeeCCCCHHHEEECCC--CCEEEeecCCcccccC
Confidence            599999999999999864  8999999999877643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=91.92  E-value=0.27  Score=54.29  Aligned_cols=52  Identities=13%  Similarity=0.345  Sum_probs=41.7

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEec--ccccccCHHHHHHHHHHHHHHHhCCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDF--GLTKKLSSSMKQALAKMFFAAAEGDH   90 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDf--G~v~~l~~~~r~~l~~L~~a~~~~D~   90 (729)
                      ...+.|+|.|||||++.++   .+.+|||  +.+|...=+.=.-++.|+.+.+..+.
T Consensus       222 ~~~l~HgDl~~gni~~~~~---~~~viD~E~a~~G~~~~Dlg~~lanl~~~~~~~~~  275 (401)
T PRK09550        222 AEALLHGDLHTGSIFVTEE---ETKVIDPEFAFYGPIGFDIGTFIANLLLNYCSQPG  275 (401)
T ss_pred             CCceeeccCCcccEEeeCC---CcEEEeccccccCChHHHHHHHHHHHHHHHhcCcc
Confidence            4568999999999999864   6999998  55567777777777888888877654

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=91.91  E-value=0.2  Score=52.35  Aligned_cols=48  Identities=23%  Similarity=0.412  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..+++++ .-+...|++|+|.+|.||++..+  +.+-|.|||+...+..
T Consensus       129 ~~~~i~~~l-~~lH~~~i~H~dlkp~nili~~~--~~~kl~dfg~~~~~~~  176 (286)
T cd06638         129 ILHEALMGL-QHLHVNKTIHRDVKGNNILLTTE--GGVKLVDFGVSAQLTS  176 (286)
T ss_pred             HHHHHHHHH-HHHHhCCccccCCCHHhEEECCC--CCEEEccCCceeeccc
Confidence            444444443 35568899999999999999865  7899999999887754

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=91.88  E-value=0.19  Score=54.09  Aligned_cols=48  Identities=23%  Similarity=0.415  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+...|++|+|.+|.|+++..+  +.+.|.|||+...++.
T Consensus       113 ~~~ql~~aL-~~LH~~~iiH~dl~p~Nili~~~--~~~~l~dfg~~~~~~~  160 (328)
T cd07856         113 FLYQILRGL-KYVHSAGVVHRDLKPSNILINEN--CDLKICDFGLARIQDP  160 (328)
T ss_pred             HHHHHHHHH-HHHHhCCcccCCCCHHHEeECCC--CCEEeCccccccccCC
Confidence            444444443 56678999999999999999754  8999999999876543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=91.87  E-value=0.19  Score=54.05  Aligned_cols=48  Identities=21%  Similarity=0.354  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. ..+...|++|+|..|.||++..+  +.+.|.|||....+..
T Consensus       139 ~~~qi~~al-~~LH~~givH~dlkp~Nill~~~--~~~kL~Dfg~~~~~~~  186 (334)
T cd05100         139 CAYQVARGM-EYLASQKCIHRDLAARNVLVTED--NVMKIADFGLARDVHN  186 (334)
T ss_pred             HHHHHHHHH-HHHHHCCeeccccccceEEEcCC--CcEEECCcccceeccc
Confidence            455555555 34578999999999999999865  7999999999877643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=91.86  E-value=0.21  Score=52.46  Aligned_cols=47  Identities=23%  Similarity=0.351  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|..|.||++..+  +++.|.|||+...+.
T Consensus       135 ~~~~i~~al-~~LH~~~i~H~dlkp~Nili~~~--~~~~l~dfg~~~~~~  181 (296)
T cd05051         135 MATQIASGM-RYLESLNFVHRDLATRNCLVGKN--YTIKIADFGMSRNLY  181 (296)
T ss_pred             HHHHHHHHH-HHHHHcCccccccchhceeecCC--CceEEccccceeecc
Confidence            334444443 34578999999999999999865  899999999887654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=91.83  E-value=0.15  Score=55.01  Aligned_cols=48  Identities=23%  Similarity=0.376  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       111 i~~ql~~a-L~~LH~~~ivH~dlkp~Nill~~~--~~~kl~dfg~~~~~~~  158 (336)
T cd07849         111 FLYQILRG-LKYIHSANVLHRDLKPSNLLLNTN--CDLKICDFGLARIADP  158 (336)
T ss_pred             HHHHHHHH-HHHHHhCCeeccCCCHHHEEECCC--CCEEECcccceeeccc
Confidence            34444444 356789999999999999999864  8999999998877654

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=91.78  E-value=0.12  Score=56.72  Aligned_cols=48  Identities=29%  Similarity=0.430  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           23 VEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        23 a~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .+..++.+++|+.       ..|.+|.|.+|.||++..++ +.|-|.|||.....+
T Consensus       118 ~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~-~~~Kl~DFG~s~~~~  172 (370)
T KOG0583|consen  118 KEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNE-GNLKLSDFGLSAISP  172 (370)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCC-CCEEEeccccccccC
Confidence            3345555555554       78999999999999998642 899999999999885

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=91.76  E-value=0.16  Score=48.59  Aligned_cols=48  Identities=27%  Similarity=0.521  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           24 EEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        24 ~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..+++.|+-|++       .+...|.|.+|-|+++.++  |.+-|-|||+.+.+.-.
T Consensus       100 ~~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~n--gelkladfglarafgip  154 (292)
T KOG0662|consen  100 PEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRN--GELKLADFGLARAFGIP  154 (292)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccC--CcEEecccchhhhcCCc
Confidence            356677777765       5677899999999999875  89999999997765443

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=91.75  E-value=0.15  Score=53.12  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.++ .-+...|++|+|.+|.||++..+  +.+.|.|||....+.
T Consensus       100 ~~~ql~~~l-~~lH~~~i~H~di~p~Nil~~~~--~~~~l~dfg~~~~~~  146 (277)
T cd05577         100 YAAQIICGL-EHLHQRRIVYRDLKPENVLLDDH--GNVRISDLGLAVELK  146 (277)
T ss_pred             HHHHHHHHH-HHHHhCCcccCCCCHHHEEECCC--CCEEEccCcchhhhc
Confidence            344555444 45578999999999999999865  799999999876654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=91.74  E-value=0.19  Score=52.45  Aligned_cols=47  Identities=19%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       127 ~~~qi~~al-~~LH~~~i~H~dlkp~nil~~~~--~~~kL~dfg~~~~~~  173 (280)
T cd05092         127 IASQIASGM-VYLASLHFVHRDLATRNCLVGQG--LVVKIGDFGMSRDIY  173 (280)
T ss_pred             HHHHHHHHH-HHHHHCCeecccccHhhEEEcCC--CCEEECCCCceeEcC
Confidence            334444443 45578999999999999999864  789999999987654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=91.72  E-value=0.21  Score=52.44  Aligned_cols=49  Identities=16%  Similarity=0.287  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. ..+...|++|+|.+|.||++..+  +.+.|.|||....+...
T Consensus       111 i~~qi~~aL-~~LH~~~i~H~dl~p~nili~~~--~~~~l~d~g~~~~~~~~  159 (293)
T cd07843         111 LMLQLLSGV-AHLHDNWILHRDLKTSNLLLNNR--GILKICDFGLAREYGSP  159 (293)
T ss_pred             HHHHHHHHH-HHHHHCCeeeccCCHHHEEECCC--CcEEEeecCceeeccCC
Confidence            444444443 45578999999999999999864  89999999998877653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=91.67  E-value=0.18  Score=51.40  Aligned_cols=50  Identities=28%  Similarity=0.334  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..+++++ .-+...|++|+|.+|+||++..+ ++.+.|.|||+...++..
T Consensus       106 ~~~~i~~~l-~~lh~~~i~h~dl~~~nil~~~~-~~~~~l~d~~~~~~~~~~  155 (256)
T cd08220         106 FFVQILLAL-HHVHTKLILHRDLKTQNILLDKH-KMVVKIGDFGISKILSSK  155 (256)
T ss_pred             HHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC-CCEEEEccCCCceecCCC
Confidence            334444444 35567899999999999999764 345789999999987643

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=91.64  E-value=0.23  Score=51.99  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..+++++. -+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       110 i~~~i~~~L~-~lH~~~i~H~dl~~~nil~~~~--~~~~l~dfg~~~~~~~  157 (287)
T cd06621         110 IAESVLKGLS-YLHSRKIIHRDIKPSNILLTRK--GQVKLCDFGVSGELVN  157 (287)
T ss_pred             HHHHHHHHHH-HHHHCCcccCCCCHHHEEEecC--CeEEEeeccccccccc
Confidence            4444444443 3468899999999999999864  7899999999876643

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=91.61  E-value=0.18  Score=53.25  Aligned_cols=50  Identities=30%  Similarity=0.394  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+. ..+...|++|+|.+|.||+++.+  +.+.|.|||....+...
T Consensus       123 ~i~~qi~~al-~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~~~  172 (310)
T cd07865         123 KVMKMLLNGL-YYIHRNKILHRDMKAANILITKD--GILKLADFGLARAFSLS  172 (310)
T ss_pred             HHHHHHHHHH-HHHHHCCeeccCCCHHHEEECCC--CcEEECcCCCcccccCC
Confidence            3444444443 56678999999999999999864  78999999999877543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.60  E-value=0.17  Score=50.35  Aligned_cols=43  Identities=23%  Similarity=0.469  Sum_probs=34.5

Q ss_pred             HHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           27 TRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        27 ~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++.|+.|++       .-|.+|.|.+|-|++++.. ..++-|||||+..-.
T Consensus       134 IryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~-~rkLrlIDWGLAEFY  183 (338)
T KOG0668|consen  134 IRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHE-LRKLRLIDWGLAEFY  183 (338)
T ss_pred             HHHHHHHHHHHHhHHHhcCcccccCCcceeeechh-hceeeeeecchHhhc
Confidence            456666665       6799999999999999875 568999999986433

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=91.59  E-value=0.22  Score=51.17  Aligned_cols=50  Identities=18%  Similarity=0.244  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.+. .-+...|++|+|.+|.||+++.+  +.+-|.|||....+..
T Consensus       107 ~~~~~~i~~al-~~lH~~~i~h~dl~~~nilv~~~--~~~kl~d~g~~~~~~~  156 (261)
T cd05148         107 IDMACQVAEGM-AYLEEQNSIHRDLAARNILVGED--LVCKVADFGLARLIKE  156 (261)
T ss_pred             HHHHHHHHHHH-HHHHHCCeeccccCcceEEEcCC--ceEEEccccchhhcCC
Confidence            33555555554 45578999999999999999865  7899999999987754

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=91.56  E-value=0.16  Score=53.91  Aligned_cols=68  Identities=28%  Similarity=0.375  Sum_probs=47.9

Q ss_pred             CceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHH----HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807            2 DGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIY----VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus         2 ~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif----~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ||-+++++-.  ..|.=++.+...++...++.+-    +.+.+|+|.+|.|+||...  |.|=|=|||.-+.|...
T Consensus       161 DgGSLd~~~k--~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNsk--GeVKicDFGVS~~lvnS  232 (364)
T KOG0581|consen  161 DGGSLDDILK--RVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSK--GEVKICDFGVSGILVNS  232 (364)
T ss_pred             CCCCHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccC--CCEEeccccccHHhhhh
Confidence            4545554433  2344445555556666655443    4899999999999999874  89999999998887665

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=91.55  E-value=0.21  Score=52.91  Aligned_cols=49  Identities=14%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. ..+...|++|+|.+|.||++..+  +.+.+.|||+...+..
T Consensus       145 ~i~~~i~~~l-~~lH~~~ivH~dlkp~Nil~~~~--~~~~l~dfg~~~~~~~  193 (302)
T cd05055         145 SFSYQVAKGM-AFLASKNCIHRDLAARNVLLTHG--KIVKICDFGLARDIMN  193 (302)
T ss_pred             HHHHHHHHHH-HHHHHCCeehhhhccceEEEcCC--CeEEECCCcccccccC
Confidence            3444555544 45678899999999999999754  7899999999886653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=91.53  E-value=0.22  Score=51.12  Aligned_cols=49  Identities=22%  Similarity=0.413  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++.+. .-+...|++|+|.+|.||++..+  +.+.|.|||......
T Consensus       100 ~~i~~qi~~aL-~~lH~~~i~H~dl~p~nil~~~~--~~~~l~dfg~~~~~~  148 (260)
T cd05611         100 KQYIAEVVLGV-EDLHQRGIIHRDIKPENLLIDQT--GHLKLTDFGLSRNGL  148 (260)
T ss_pred             HHHHHHHHHHH-HHHHHCCeecCCCCHHHeEECCC--CcEEEeecccceecc
Confidence            34455555544 45678999999999999999864  789999999876543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=91.50  E-value=0.16  Score=53.47  Aligned_cols=88  Identities=17%  Similarity=0.291  Sum_probs=65.7

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAK   80 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~   80 (729)
                      |+|.++..+..    -.|+..|-..++.+..+ +-.+|++|+|-+-=||+|..|  +++++|||=+|-+.+.+.-+-|. 
T Consensus       190 v~g~Pl~~v~~----v~d~~~ly~~lm~~Iv~-la~~GlIHgDFNEFNimv~dd--~~i~vIDFPQmvS~sh~nA~~YF-  261 (465)
T KOG2268|consen  190 VDGYPLRQVRH----VEDPPTLYDDLMGLIVR-LANHGLIHGDFNEFNIMVKDD--DKIVVIDFPQMVSTSHPNAEYYF-  261 (465)
T ss_pred             hcccceeeeee----cCChHHHHHHHHHHHHH-HHHcCceecccchheeEEecC--CCEEEeechHhhccCCCccceee-
Confidence            46666666533    35678888888877665 479999999999999999965  79999999999999988766653 


Q ss_pred             HHHHHHhCCHHHHHHHHH-HcCC
Q 004807           81 MFFAAAEGDHVALLSAFA-EMGL  102 (729)
Q Consensus        81 L~~a~~~~D~~~~~~~l~-~lG~  102 (729)
                            .+|.+=+.+.+. ++|+
T Consensus       262 ------dRDv~Ci~~fFrKkf~Y  278 (465)
T KOG2268|consen  262 ------DRDVECIRAFFRKKFGY  278 (465)
T ss_pred             ------cccHHHHHHHHHHhcCC
Confidence                  466655555544 3344

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=91.48  E-value=0.19  Score=52.96  Aligned_cols=49  Identities=20%  Similarity=0.337  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+. ..+...|++|+|.+|.||+++.+  +.+.|.|||....+...
T Consensus       121 i~~qi~~aL-~~LH~~~i~H~dl~p~nili~~~--~~~kl~dfg~~~~~~~~  169 (302)
T cd07864         121 FMKQLLEGL-NYCHKKNFLHRDIKCSNILLNNK--GQIKLADFGLARLYNSE  169 (302)
T ss_pred             HHHHHHHHH-HHHHhCCeecCCCCHHHEEECCC--CcEEeCcccccccccCC
Confidence            344444443 45578899999999999999864  89999999998877654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=91.44  E-value=0.16  Score=53.73  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+. .-+...|++|+|.+|.||+++.+  +.+.+.|||....+...
T Consensus       120 ~i~~ql~~aL-~~LH~~gi~H~dLkp~Nill~~~--~~~kl~dfg~~~~~~~~  169 (296)
T cd06654         120 AVCRECLQAL-EFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITPE  169 (296)
T ss_pred             HHHHHHHHHH-HHHHHCCcccCCCCHHHEEEcCC--CCEEECccccchhcccc
Confidence            3444555544 34478899999999999999764  79999999988876544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PLN02236 choline kinase

Probab=91.38  E-value=0.17  Score=55.02  Aligned_cols=38  Identities=16%  Similarity=0.337  Sum_probs=31.0

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ...+.|.|+|+|||++..+ ++++.||||-+++-=++-+
T Consensus       199 ~~~~cH~Dl~~~Nil~~~~-~~~~~lID~Eya~~~~~~~  236 (344)
T PLN02236        199 EIGFCHNDLQYGNIMIDEE-TRAITIIDYEYASYNPVAY  236 (344)
T ss_pred             CceEEeCCCCcCcEEEeCC-CCcEEEEeehhccccchHH
Confidence            3478999999999999853 4689999999998666543

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=91.38  E-value=0.24  Score=54.51  Aligned_cols=49  Identities=14%  Similarity=0.325  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. .-+...|++|+|..|.||+++.+  +.+.|.|||+...+..
T Consensus       216 ~i~~qi~~aL-~yLH~~giiHrDLkp~Nil~~~~--~~~kL~DfGla~~~~~  264 (374)
T cd05106         216 RFSSQVAQGM-DFLASKNCIHRDVAARNVLLTDG--RVAKICDFGLARDIMN  264 (374)
T ss_pred             HHHHHHHHHH-HHHHHCCEEeccCchheEEEeCC--CeEEEeeceeeeeccC
Confidence            3444444443 34568899999999999999864  7899999999876643

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=91.36  E-value=0.17  Score=52.85  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=28.2

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .|++|+|.+|.||++..+  +.+.|.|||+...+
T Consensus       127 ~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~  158 (288)
T cd06616         127 LKIIHRDVKPSNILLDRN--GNIKLCDFGISGQL  158 (288)
T ss_pred             CCeeccCCCHHHEEEccC--CcEEEeecchhHHh
Confidence            499999999999999864  78999999987654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=91.33  E-value=0.19  Score=53.04  Aligned_cols=50  Identities=22%  Similarity=0.327  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.++ .-+...|++|+|.+|.|++++.+  +.+.|.|||....+...
T Consensus       119 ~i~~~l~~al-~~LH~~gi~H~dL~p~Nili~~~--~~~kL~dfg~~~~~~~~  168 (293)
T cd06647         119 AVCRECLQAL-EFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITPE  168 (293)
T ss_pred             HHHHHHHHHH-HHHHhCCEeeccCCHHHEEEcCC--CCEEEccCcceeccccc
Confidence            3444555444 45578999999999999999865  78999999988766554

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=91.22  E-value=0.29  Score=51.30  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++.+. ..+...|++|+|..|.||++..+  +.+.|.|||+...+.
T Consensus       124 ~~~~ql~~aL-~~lH~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~~  171 (288)
T cd05093         124 HIAQQIAAGM-VYLASQHFVHRDLATRNCLVGEN--LLVKIGDFGMSRDVY  171 (288)
T ss_pred             HHHHHHHHHH-HHHHhCCeeecccCcceEEEccC--CcEEeccCCcccccc
Confidence            3455555554 45678999999999999999864  889999999987664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=91.18  E-value=0.24  Score=50.54  Aligned_cols=53  Identities=17%  Similarity=0.332  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ++|++.|++..-. +.....+|.|.+|-||++++  +-+|.+=|||...+|.+..+
T Consensus       126 R~iMrqlfegVey-lHa~~IVHRDLKpENILldd--n~~i~isDFGFa~~l~~Gek  178 (411)
T KOG0599|consen  126 RRIMRQLFEGVEY-LHARNIVHRDLKPENILLDD--NMNIKISDFGFACQLEPGEK  178 (411)
T ss_pred             HHHHHHHHHHHHH-HHHhhhhhcccChhheeecc--ccceEEeccceeeccCCchh
Confidence            4555555555433 35778999999999999975  37999999999999987543

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=91.17  E-value=0.26  Score=53.05  Aligned_cols=50  Identities=30%  Similarity=0.463  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+. ..+...|++|+|.+|.||+++.+  |.+-|.|||+...+...
T Consensus       111 ~i~~qi~~~L-~~LH~~~i~H~dl~p~nill~~~--~~~kl~d~g~~~~~~~~  160 (337)
T cd07852         111 YIMYQLLKAL-KYIHSGNVIHRDLKPSNILLNSD--CRVKLADFGLARSLSEL  160 (337)
T ss_pred             HHHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CcEEEeeccchhccccc
Confidence            3555555544 45678999999999999999865  89999999998877543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=91.15  E-value=0.24  Score=51.41  Aligned_cols=48  Identities=23%  Similarity=0.364  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|..|.||+++.+  +.+.|.|||+...+..
T Consensus       124 ~~~~i~~~l-~~lH~~~i~H~di~p~nill~~~--~~~kl~dfg~~~~~~~  171 (277)
T cd05032         124 MAAEIADGM-AYLAAKKFVHRDLAARNCMVAED--LTVKIGDFGMTRDIYE  171 (277)
T ss_pred             HHHHHHHHH-HHHHhCCccccccChheEEEcCC--CCEEECCcccchhhcc
Confidence            444454444 45678999999999999999865  8899999999876543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=91.03  E-value=0.15  Score=52.59  Aligned_cols=70  Identities=19%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             ecCCHHhHhhcCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807            5 RLNDCESLEAFGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ   76 (729)
Q Consensus         5 ki~d~~~l~~~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~   76 (729)
                      +|+|+.+++.....-.+|+..|-+..  ++-+....-+|.|.+.|||++..|  |---|-|||..|.|++.+-.
T Consensus       114 SiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~--G~AKLADFGVAGQLTDTMAK  185 (502)
T KOG0574|consen  114 SISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTD--GIAKLADFGVAGQLTDTMAK  185 (502)
T ss_pred             cHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEccc--chhhhhhccccchhhhhHHh
Confidence            56778777776677777776665544  333445566899999999999876  77788999999999987644

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=91.00  E-value=0.32  Score=50.59  Aligned_cols=47  Identities=26%  Similarity=0.367  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. .-+...|++|+|.+|.|++++.+  +++.|.|||....+.
T Consensus       108 ~~~ql~~~l-~~lh~~~i~h~dl~p~nili~~~--~~~~l~d~g~~~~~~  154 (280)
T cd06611         108 VCRQMLEAL-NFLHSHKVIHRDLKAGNILLTLD--GDVKLADFGVSAKNK  154 (280)
T ss_pred             HHHHHHHHH-HHHHHCCcccCCCChhhEEECCC--CCEEEccCccchhhc
Confidence            444444433 34567899999999999999764  899999999866553

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>PLN02756 S-methyl-5-thioribose kinase

Probab=90.98  E-value=0.25  Score=54.51  Aligned_cols=51  Identities=22%  Similarity=0.426  Sum_probs=38.7

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEe--cccccccCHHHHHHHHHHHHHHHhCC
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLD--FGLTKKLSSSMKQALAKMFFAAAEGD   89 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllD--fG~v~~l~~~~r~~l~~L~~a~~~~D   89 (729)
                      ...++|+|.|||||++.++   +..+||  |..+|...=+.=.-+..++.+...++
T Consensus       229 ~~~L~HGDl~~g~i~~~~~---~~~~id~ef~~~g~~~~d~g~~~~~~~~~~~~~~  281 (418)
T PLN02756        229 AQALVHGDLHTGSVMVTPD---STQVIDPEFAFYGPMGFDIGAFLGNLILAYFAQD  281 (418)
T ss_pred             ccceeecCCCCCcEEEcCC---CceEecchhhccCchHHhHHHHHhhhHHHHhhCc
Confidence            4678999999999999865   588888  45666666665556677777777664

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=90.95  E-value=0.31  Score=50.67  Aligned_cols=49  Identities=16%  Similarity=0.372  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC-CCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP-HRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~-g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+++ ..+.|.|||+...+.
T Consensus       121 ~~~qi~~~l-~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~  170 (277)
T cd05036         121 CARDVAKGC-KYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIY  170 (277)
T ss_pred             HHHHHHHHH-HHHHHCCEeecccchheEEEeccCCCcceEeccCccccccC
Confidence            444555444 4557889999999999999986422 358899999998774

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=90.72  E-value=0.26  Score=50.71  Aligned_cols=49  Identities=20%  Similarity=0.371  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+ +..+.|.|||....++.
T Consensus       108 ~~~ql~~al-~~LH~~~i~H~~i~~~nil~~~~-~~~~~l~dfg~~~~~~~  156 (268)
T cd06630         108 YTEQLLRGL-SYLHENQIIHRDVKGANLLIDST-GQRLRIADFGAAARLAA  156 (268)
T ss_pred             HHHHHHHHH-HHHHhCCeecCCCCHHHEEEcCC-CCEEEEccccccccccc
Confidence            345555544 45678899999999999999754 23589999999988764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=90.59  E-value=0.61  Score=47.65  Aligned_cols=76  Identities=20%  Similarity=0.293  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 004807           18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAF   97 (729)
Q Consensus        18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l   97 (729)
                      +...+-+.+++-+-+++-..|.+|||.-.=||++. +  |.+++||||+...+.-..       ...++.+|..-+...+
T Consensus       167 e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~--~~p~iID~~QaV~~~hp~-------a~e~L~RDv~Ni~~fF  236 (268)
T COG1718         167 EAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-D--GEPYIIDVSQAVTIDHPN-------AFEFLERDVRNIARFF  236 (268)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-C--CeEEEEECccccccCCCc-------hHHHHHHHHHHHHHHH
Confidence            45666777777777777779999999999999997 3  799999999998887543       3345578888888888


Q ss_pred             HHcCCc
Q 004807           98 AEMGLR  103 (729)
Q Consensus        98 ~~lG~~  103 (729)
                      ...|+-
T Consensus       237 ~r~gv~  242 (268)
T COG1718         237 RRKGVE  242 (268)
T ss_pred             HHcCCC
Confidence            888874

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=90.57  E-value=0.38  Score=49.83  Aligned_cols=46  Identities=22%  Similarity=0.406  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++.+. .-+...|++|+|..|.||++..+  +.+.|.|||+...
T Consensus       116 ~~~~~i~~al-~~lH~~~i~H~dikp~nili~~~--~~~kl~dfgl~~~  161 (270)
T cd05047         116 HFAADVARGM-DYLSQKQFIHRDLAARNILVGEN--YVAKIADFGLSRG  161 (270)
T ss_pred             HHHHHHHHHH-HHHHHCCEeecccccceEEEcCC--CeEEECCCCCccc
Confidence            3444444333 45668899999999999999864  7899999998753

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=90.57  E-value=0.33  Score=53.93  Aligned_cols=49  Identities=16%  Similarity=0.287  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||+...+..
T Consensus       241 ~~~~qi~~aL-~~LH~~~ivH~dikp~Nill~~~--~~~kL~DfGla~~~~~  289 (400)
T cd05105         241 SFTYQVARGM-EFLASKNCVHRDLAARNVLLAQG--KIVKICDFGLARDIMH  289 (400)
T ss_pred             HHHHHHHHHH-HHHHhCCeeCCCCChHhEEEeCC--CEEEEEeCCcceeccc
Confidence            3444555444 45578999999999999999864  7899999999876543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=90.55  E-value=0.14  Score=52.12  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ....+|.|.+|.||++++-  |.|-|-|||.+|.|-+.
T Consensus       186 ~lkiIHRDvKPSNILldr~--G~vKLCDFGIcGqLv~S  221 (361)
T KOG1006|consen  186 ELKIIHRDVKPSNILLDRH--GDVKLCDFGICGQLVDS  221 (361)
T ss_pred             HhhhhhccCChhheEEecC--CCEeeecccchHhHHHH
Confidence            6678999999999999864  89999999999987554

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=90.54  E-value=0.28  Score=51.27  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=29.6

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .|++|+|..|.||++..+  +++.+.|||+...+..
T Consensus       123 ~~i~H~dl~p~nil~~~~--~~~~l~d~gl~~~~~~  156 (284)
T cd06620         123 HRIMHRDIKPSNILVNSR--GQIKLCDFGVSGELIN  156 (284)
T ss_pred             cCeeccCCCHHHEEECCC--CcEEEccCCcccchhh
Confidence            689999999999999764  8999999999876643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=90.46  E-value=0.27  Score=52.99  Aligned_cols=50  Identities=24%  Similarity=0.386  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.++ ..+...|++|+|.+|.||+++.+  +.+.|.|||+...+..
T Consensus       111 ~~i~~qi~~aL-~~LH~~~i~H~dlkp~Nil~~~~--~~~kL~Dfg~~~~~~~  160 (337)
T cd07858         111 QYFLYQLLRGL-KYIHSANVLHRDLKPSNLLLNAN--CDLKICDFGLARTTSE  160 (337)
T ss_pred             HHHHHHHHHHH-HHHHhCCEecCCCCHHHEEEcCC--CCEEECcCccccccCC
Confidence            33455555554 46678999999999999999764  8999999998877654

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>TIGR03843 conserved hypothetical protein

Probab=90.39  E-value=0.5  Score=47.65  Aligned_cols=43  Identities=19%  Similarity=0.266  Sum_probs=36.9

Q ss_pred             HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHH
Q 004807           33 QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQA   77 (729)
Q Consensus        33 qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~   77 (729)
                      -+|..-..++|=|.||+++.+|  |++.-||+|+|-.-.+++|.-
T Consensus       139 aVfDi~inNaDRk~GhiL~~~d--g~l~~IDHGl~f~~~~klrtv  181 (253)
T TIGR03843       139 AVFDALVNNADRKGGHVLPGPD--GRVWGVDHGVCFHVEPKLRTV  181 (253)
T ss_pred             hhheeeeecCCCCCCcEeEcCC--CcEEEecCceecCCCCccccc
Confidence            3577788899999999999875  899999999999987776664

This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=90.38  E-value=0.47  Score=46.18  Aligned_cols=45  Identities=27%  Similarity=0.465  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCe--EEEecccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRP--ILLDFGLT   67 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~l--vllDfG~v   67 (729)
                      .+++++-+...++ ...+..|+|.--.||++.++ ++++  +|||||+-
T Consensus       117 ~~~~~iG~~igkl-H~ndiiHGDLTTSNill~~~-~~~~~~~lIdfgls  163 (229)
T KOG3087|consen  117 ELARRIGELIGKL-HDNDIIHGDLTTSNILLRSD-GNQITPILIDFGLS  163 (229)
T ss_pred             HHHHHHHHHHHHh-hhCCeecccccccceEEecC-CCcCceEEEeecch
Confidence            5666666666554 78999999999999999986 4565  99999974

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=90.36  E-value=0.25  Score=53.38  Aligned_cols=48  Identities=19%  Similarity=0.340  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+. .-+...|++|+|.+|.||+++.+ ++.+.+.|||+...+..
T Consensus       120 ~~qi~~aL-~~LH~~givH~dikp~Nili~~~-~~~~kl~dfg~~~~~~~  167 (342)
T cd07854         120 MYQLLRGL-KYIHSANVLHRDLKPANVFINTE-DLVLKIGDFGLARIVDP  167 (342)
T ss_pred             HHHHHHHH-HHHHhCCcccCCCCHHHEEEcCC-CceEEECCcccceecCC
Confidence            33444433 23457999999999999999764 46789999999987643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=90.28  E-value=0.4  Score=49.67  Aligned_cols=46  Identities=17%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++++. .-+...|++|+|.+|.||+++.+  +.+.|.|||....
T Consensus       103 ~~~~~i~~al-~~lH~~~i~H~dikp~nil~~~~--~~~~l~Dfg~~~~  148 (268)
T cd05086         103 RMACEIAAGV-THMHKHNFLHSDLALRNCFLTSD--LTVKVGDYGIGPS  148 (268)
T ss_pred             HHHHHHHHHH-HHHHHCCeeccCCccceEEEcCC--ccEEecccccccc
Confidence            3444444443 34578999999999999999764  8899999998654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=90.21  E-value=0.36  Score=49.91  Aligned_cols=48  Identities=10%  Similarity=0.093  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ..++..++.+. ..+...|++|+|.+|.||++..+  +.+.+.|||.....
T Consensus       110 ~~~~~~i~~al-~~lH~~~iiH~dikp~nili~~~--~~~~l~dfg~~~~~  157 (266)
T cd05064         110 MGMLPGLASGM-KYLSEMGYVHKGLAAHKVLVNSD--LVCKISGFRRLQED  157 (266)
T ss_pred             HHHHHHHHHHH-HHHHHCCEeeccccHhhEEEcCC--CcEEECCCcccccc
Confidence            34455555444 46689999999999999999764  78999999976554

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=90.20  E-value=0.44  Score=50.74  Aligned_cols=46  Identities=20%  Similarity=0.309  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+. ..+...|++|+|.+|.||++..+  +.+-|.|||+....
T Consensus       126 ~~~qi~~al-~~LH~~gi~H~dl~p~nili~~~--~~~kL~dfg~~~~~  171 (313)
T cd06633         126 ITHGALQGL-AYLHSHNMIHRDIKAGNILLTEP--GQVKLADFGSASKS  171 (313)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCChhhEEECCC--CCEEEeecCCCccc
Confidence            444555544 55578999999999999999864  78999999987654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=90.12  E-value=0.36  Score=49.33  Aligned_cols=50  Identities=24%  Similarity=0.320  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +++..++.+. ..+...|++|+|.+|.||++..+  +.+.+.|||+...+...
T Consensus       105 ~~~~~l~~~l-~~lh~~~i~h~~l~~~nil~~~~--~~~~l~d~~~~~~~~~~  154 (256)
T cd08218         105 DWFVQICLAL-KHVHDRKILHRDIKSQNIFLTKD--GTIKLGDFGIARVLNST  154 (256)
T ss_pred             HHHHHHHHHH-HHHHhCCEecCCCCHHHEEEcCC--CCEEEeeccceeecCcc
Confidence            3445555554 34678999999999999999764  78999999999887653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=90.08  E-value=0.4  Score=56.03  Aligned_cols=56  Identities=29%  Similarity=0.408  Sum_probs=44.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEec---CCCCCeEEEecccccccCHH
Q 004807           17 VNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSK---DPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        17 ~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~---d~~g~lvllDfG~v~~l~~~   73 (729)
                      +++..+...++. -+..+...+.+|.|.+|.||+|.-   ++..+..|=|||++++++..
T Consensus       606 i~~~~~l~q~~~-GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~  664 (903)
T KOG1027|consen  606 IDPISVLSQIAS-GLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGG  664 (903)
T ss_pred             ccHHHHHHHHHH-HHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCC
Confidence            666666666666 345567899999999999999986   33347889999999999864

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=90.04  E-value=0.33  Score=50.10  Aligned_cols=47  Identities=21%  Similarity=0.244  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. .-+...|++|+|.+|.||+++.+  +++-|.|||....+.
T Consensus       111 ~~~qi~~~l-~~LH~~~i~H~~l~p~nil~~~~--~~~~l~dfg~~~~~~  157 (266)
T cd06651         111 YTRQILEGM-SYLHSNMIVHRDIKGANILRDSA--GNVKLGDFGASKRLQ  157 (266)
T ss_pred             HHHHHHHHH-HHHHhCCeeeCCCCHHHEEECCC--CCEEEccCCCccccc
Confidence            445555544 44578999999999999999754  899999999987664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=90.01  E-value=0.2  Score=52.06  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=41.0

Q ss_pred             hcCCCHHHHHHHHHHHHHH--HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           14 AFGVNKQKVVEEITRAYAH--QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        14 ~~~~d~~~la~~l~~~~~~--qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .+|++.+.+-..+....-.  -...++.+|.|.+|-||+|+..  |.+-|-|||..+.|++
T Consensus        95 p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~--gvvKLCDFGFAR~L~~  153 (396)
T KOG0593|consen   95 PNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQN--GVVKLCDFGFARTLSA  153 (396)
T ss_pred             cCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecC--CcEEeccchhhHhhcC
Confidence            3466655544433333221  1236889999999999999975  8999999999999984

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=89.85  E-value=0.29  Score=59.19  Aligned_cols=39  Identities=28%  Similarity=0.558  Sum_probs=32.0

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCC-----CCCeEEEecccccc
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDP-----PHRPILLDFGLTKK   69 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~-----~g~lvllDfG~v~~   69 (729)
                      .+++...|.+|||.+|-|++++...     .--|-|||||.---
T Consensus       807 ve~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siD  850 (974)
T KOG1166|consen  807 VEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSID  850 (974)
T ss_pred             HHHHHhcceecccCCcceeEeecccCCCCcccceEEEeccccee
Confidence            6788999999999999999999631     22489999998543

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=89.85  E-value=0.21  Score=52.20  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=27.3

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      =+.|.|.||+|++.++.  |+|.||||=-.+-=++
T Consensus       154 v~cH~Dl~~~N~l~t~~--~~l~LIDWEyAg~~D~  186 (269)
T COG0510         154 VPCHNDLNPGNLLLTDK--GGLFLIDWEYAGLNDP  186 (269)
T ss_pred             eeecCCCCccceEEcCC--CcEEEEecccCCCccH
Confidence            57899999999999863  7999999976665444

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=89.83  E-value=0.43  Score=49.51  Aligned_cols=46  Identities=22%  Similarity=0.424  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+. +.+...|++|+|.+|.||+++.   +.+.|.|||....+.
T Consensus       105 ~~~qi~~~L-~~LH~~~i~H~dl~p~ni~l~~---~~~kl~dfg~~~~~~  150 (282)
T cd07831         105 YMYQLLKSL-DHMHRNGIFHRDIKPENILIKD---DILKLADFGSCRGIY  150 (282)
T ss_pred             HHHHHHHHH-HHHHHCCceecccCHHHEEEcC---CCeEEEecccccccc
Confidence            444444433 5667899999999999999975   799999999987764

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=89.77  E-value=0.35  Score=51.33  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=33.4

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..+...|++|+|.+|.||++..+  +.+.+.|||....+.+
T Consensus       129 ~~LH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~~~  167 (308)
T cd06634         129 AYLHSHNMIHRDVKAGNILLSEP--GLVKLGDFGSASIMAP  167 (308)
T ss_pred             HHHHhCCcccCCCCHHhEEECCC--CcEEECCcccceeecC
Confidence            55578999999999999999764  8999999999877654

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=89.70  E-value=0.37  Score=50.16  Aligned_cols=48  Identities=15%  Similarity=0.213  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|+|..|.||+++.+  +++.+.|||+.+.+.+
T Consensus       122 i~~~i~~~l-~~LH~~~i~H~di~p~nil~~~~--~~~kl~d~g~~~~~~~  169 (280)
T cd05043         122 MAIQIACGM-SYLHKRGVIHKDIAARNCVIDEE--LQVKITDNALSRDLFP  169 (280)
T ss_pred             HHHHHHHHH-HHHHHCCEeecccCHhhEEEcCC--CcEEECCCCCcccccC
Confidence            444455444 45578999999999999999865  8999999999887643

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=89.69  E-value=0.35  Score=50.59  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .-+...|++|.|.+|.||+++.+  |++.|.|||.....
T Consensus       117 ~~lH~~~i~H~dl~p~nil~~~~--~~~kl~dfg~~~~~  153 (291)
T cd07844         117 AYCHQRRVLHRDLKPQNLLISER--GELKLADFGLARAK  153 (291)
T ss_pred             HHHHhCCeecccCCHHHEEEcCC--CCEEECcccccccc
Confidence            45568899999999999999764  89999999988654

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=89.68  E-value=0.58  Score=49.31  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCC---CCeEEEeccccccc
Q 004807           19 KQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPP---HRPILLDFGLTKKL   70 (729)
Q Consensus        19 ~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~---g~lvllDfG~v~~l   70 (729)
                      .+.++...+...  .+-+....++-.|.+|-||||-+-++   .-|-+|||||.+..
T Consensus       123 vKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Y  179 (449)
T KOG1165|consen  123 VKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEY  179 (449)
T ss_pred             HHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhh
Confidence            344444444433  45567888999999999999976211   24889999999875

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.62  E-value=0.52  Score=51.47  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=40.1

Q ss_pred             cCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           15 FGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        15 ~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .|.+-..||..|-++.  +.=+...|.+|.|.++||||+..|  |.|-|=|||-...|-.
T Consensus       121 ~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~d--G~VkLadFgvsa~l~~  178 (516)
T KOG0582|consen  121 DGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSD--GTVKLADFGVSASLFD  178 (516)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCC--CcEEEcCceeeeeecc
Confidence            3444444444444433  334568999999999999999865  8999999998776654

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=89.60  E-value=0.45  Score=49.15  Aligned_cols=49  Identities=20%  Similarity=0.378  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++.+. ..+...|++|.|..|.||++..+  +.+.+.|||....+.
T Consensus       116 ~~~~~~i~~~l-~~lH~~~i~H~dikp~nili~~~--~~~kl~dfg~~~~~~  164 (273)
T cd05074         116 VRFMIDIASGM-EYLSSKNFIHRDLAARNCMLNEN--MTVCVADFGLSKKIY  164 (273)
T ss_pred             HHHHHHHHHHH-HHHHhCCEeecccchhhEEEcCC--CCEEECccccccccc
Confidence            34455555444 45578999999999999999754  789999999888764

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.59  E-value=0.45  Score=53.28  Aligned_cols=70  Identities=23%  Similarity=0.372  Sum_probs=51.9

Q ss_pred             CCceecCCHHhHhhcCCCHHHHH---HHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVV---EEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la---~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ++|-.++|+.....  .+-.+||   +..+.+ ++-+...|..|.|.+--||+...|  |++=|-|||.|..++++..
T Consensus       352 m~ggsLTDvVt~~~--~~E~qIA~Icre~l~a-L~fLH~~gIiHrDIKSDnILL~~~--g~vKltDFGFcaqi~~~~~  424 (550)
T KOG0578|consen  352 MEGGSLTDVVTKTR--MTEGQIAAICREILQG-LKFLHARGIIHRDIKSDNILLTMD--GSVKLTDFGFCAQISEEQS  424 (550)
T ss_pred             cCCCchhhhhhccc--ccHHHHHHHHHHHHHH-HHHHHhcceeeeccccceeEeccC--CcEEEeeeeeeeccccccC
Confidence            35667888865332  3334443   333332 455678999999999999999986  8999999999999999874

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=89.56  E-value=0.22  Score=60.03  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=45.8

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHcC
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMG  101 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~lG  101 (729)
                      +..|..-|++|.|.+|.|+|++..  |.|=|=|||-|-.++.+   +-.+-..|+-.-|+-. .++|..+|
T Consensus       188 ldslH~mgyVHRDiKPDNvLld~~--GHikLADFGsClkm~~d---G~V~s~~aVGTPDYIS-PEvLqs~~  252 (1317)
T KOG0612|consen  188 LDSLHSMGYVHRDIKPDNVLLDKS--GHIKLADFGSCLKMDAD---GTVRSSVAVGTPDYIS-PEVLQSQG  252 (1317)
T ss_pred             HHHHHhccceeccCCcceeEeccc--CcEeeccchhHHhcCCC---CcEEeccccCCCCccC-HHHHHhhc
Confidence            456679999999999999999875  89999999999888742   2333344555555421 33444444

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=89.53  E-value=0.35  Score=52.02  Aligned_cols=50  Identities=28%  Similarity=0.425  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. .-+...|++|+|.+|.||++..+  |++.|.|||+...+..
T Consensus       110 ~~i~~qi~~aL-~~LH~~~ivH~dlkp~Nil~~~~--~~~kl~dfg~~~~~~~  159 (334)
T cd07855         110 RYFLYQLLRGL-KYIHSANVIHRDLKPSNLLVNED--CELRIGDFGMARGLSS  159 (334)
T ss_pred             HHHHHHHHHHH-HHHHHCCeecCCCCHHHEEEcCC--CcEEecccccceeecc
Confidence            34445555443 34568999999999999999865  8999999999876543

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PTZ00284 protein kinase; Provisional

Probab=89.11  E-value=0.42  Score=54.24  Aligned_cols=47  Identities=17%  Similarity=0.174  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCC--------------CCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPP--------------HRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~--------------g~lvllDfG~v~~   69 (729)
                      ++..++.+ +.-+.. .|++|+|.+|.||++..++.              +++-|.|||.+..
T Consensus       236 i~~qi~~a-L~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~  297 (467)
T PTZ00284        236 IIFQTGVA-LDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCD  297 (467)
T ss_pred             HHHHHHHH-HHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCcccc
Confidence            34444443 234444 59999999999999986421              2588999997643

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.05  E-value=0.24  Score=50.00  Aligned_cols=51  Identities=29%  Similarity=0.389  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +++.+-|+. -+.-|.+....|.|.+|.|++++.|  |-|.|-|||+.+.++..
T Consensus       127 kk~Mk~Lm~-GL~~iHr~kilHRDmKaaNvLIt~d--gilklADFGlar~fs~~  177 (376)
T KOG0669|consen  127 KKVMKGLMN-GLYYIHRNKILHRDMKAANVLITKD--GILKLADFGLARAFSTS  177 (376)
T ss_pred             HHHHHHHHH-HHHHHHHhhHHhhcccHhhEEEcCC--ceEEeeccccccceecc
Confidence            334443333 3455678889999999999999876  89999999999877643

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=88.67  E-value=0.57  Score=52.12  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++.+. .-+...|++|+|.+|.||++..+  +.+.|.|||+...+.
T Consensus       242 ~~~~~qi~~aL-~~LH~~~ivHrdlkp~NiLl~~~--~~~kL~DfGla~~~~  290 (401)
T cd05107         242 VGFSYQVANGM-EFLASKNCVHRDLAARNVLICEG--KLVKICDFGLARDIM  290 (401)
T ss_pred             HHHHHHHHHHH-HHHhcCCcCcccCCcceEEEeCC--CEEEEEecCcceecc
Confidence            34455555554 44678999999999999999864  789999999988653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=88.22  E-value=0.68  Score=47.80  Aligned_cols=50  Identities=18%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC-----CCeEEEeccccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP-----HRPILLDFGLTKKL   70 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~-----g~lvllDfG~v~~l   70 (729)
                      ..++..++++. .-+...|++|+|.+|.||++..++.     +.+.+.|||....+
T Consensus       108 ~~i~~qi~~~l-~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~  162 (262)
T cd05077         108 FKVAKQLASAL-SYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITV  162 (262)
T ss_pred             HHHHHHHHHHH-HHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccc
Confidence            34555666553 4557889999999999999976421     12788999987654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=88.16  E-value=0.23  Score=49.83  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ...|-|.|.|||||++... ++++.||||=.++.=+..
T Consensus       142 ~~v~cHnDl~~~Nil~~~~-~~~~~lIDfEya~~n~~~  178 (211)
T PF01633_consen  142 PLVFCHNDLNPGNILINNK-DGEVKLIDFEYAGYNDRA  178 (211)
T ss_dssp             GEEEE-S--SGGGEEETSS-SSCEEE--GTT-EEEEHH
T ss_pred             CceEeeccCccccEEeccC-CCeEEEecHHHHhhccch
Confidence            3578899999999999222 479999999888765543

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=87.88  E-value=0.39  Score=51.93  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=29.6

Q ss_pred             ccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      |-|.|+|||||++.++ ++++.||||...+-=++-+
T Consensus       184 ~CHnDl~~~NiL~~~~-~~~l~lID~EYag~nd~~f  218 (330)
T PLN02421        184 FAHNDLLSGNLMLNED-EGKLYFIDFEYGSYSYRGY  218 (330)
T ss_pred             EEECCCCcccEEEeCC-CCcEEEEcccccCCCccHH
Confidence            7899999999999754 4689999999988776654

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=87.85  E-value=0.78  Score=48.62  Aligned_cols=47  Identities=17%  Similarity=0.345  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|.|.+|.||+++.+  |.+.+.|||....+.
T Consensus       106 ~~~~l~~~L-~~LH~~~ivH~dlk~~Nili~~~--~~~kl~d~~~~~~~~  152 (314)
T cd08216         106 ILKDVLNAL-DYIHSKGFIHRSVKASHILLSGD--GKVVLSGLRYSVSMI  152 (314)
T ss_pred             HHHHHHHHH-HHHHHCCeecCCCCcceEEEecC--CceEEecCccceeec
Confidence            344444443 34568999999999999999864  889999999887664

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>PLN00181 protein SPA1-RELATED; Provisional

Probab=87.68  E-value=0.69  Score=56.33  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++.-. +...|++|.|.+|.||++...  |++-++|||++...
T Consensus        85 i~~qi~~al~~-lH~~gIvHrDlKP~NiLl~~~--~~~k~~d~~~~~~~  130 (793)
T PLN00181         85 VFRQIVEIVNA-AHSQGIVVHNVRPSCFVMSSF--NHVSFIESASCSDS  130 (793)
T ss_pred             HHHHHHHHHHH-HHhCCeeeccCCchhEEEccc--CcEEEeeccccCcc
Confidence            44455554433 468999999999999999753  67777777776544

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=87.54  E-value=0.4  Score=49.71  Aligned_cols=42  Identities=21%  Similarity=0.357  Sum_probs=36.6

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++-|...+.++.|.+|-|||++.+  |.|-+.|||..++++.++
T Consensus       157 leylH~~~iiYRDLKPENiLlD~~--G~iKitDFGFAK~v~~rT  198 (355)
T KOG0616|consen  157 LEYLHSLDIIYRDLKPENLLLDQN--GHIKITDFGFAKRVSGRT  198 (355)
T ss_pred             HHHHHhcCeeeccCChHHeeeccC--CcEEEEeccceEEecCcE
Confidence            344558899999999999999864  999999999999999873

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=87.42  E-value=0.51  Score=49.97  Aligned_cols=50  Identities=20%  Similarity=0.284  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. .-+...|++|.|.+|.||+++.++  ++.+.|.|||+...+..
T Consensus       113 i~~qi~~~l-~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~  164 (316)
T cd07842         113 LLWQILNGV-HYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNA  164 (316)
T ss_pred             HHHHHHHHH-HHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCC
Confidence            444444433 345688999999999999998621  37899999999887644

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>TIGR03423 pbp2_mrdA penicillin-binding protein 2

Probab=87.28  E-value=5.1  Score=46.99  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=25.4

Q ss_pred             CccccccchHHHHHHHHHHHHHCCCCCccCchhh
Q 004807          281 SLFPVFSVTKGITAGMLHWLVDNGKLKLEENIAN  314 (729)
Q Consensus       281 t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~  314 (729)
                      ..|.-||.-|+||+++.   .|+|.++.++.+..
T Consensus       302 ~~~~PGStfKp~t~aaa---Le~g~i~~~~~~~~  332 (592)
T TIGR03423       302 GVYPPGSTFKPFVALAA---LEEGVITPETRIYC  332 (592)
T ss_pred             CccCCccHHHHHHHHHH---HHcCCCCCCcEEEc
Confidence            46999999999997654   48899999888754

Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).

>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain

Probab=86.87  E-value=0.44  Score=47.58  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++.+-+-=+|.||+||+++.  +|+++=+|||.+-.-.+
T Consensus        96 ~s~~~YilglgDRh~~NIli~~--~G~v~hIDfg~~~~~~~  134 (202)
T smart00146       96 YSVITYILGLGDRHNDNIMLDK--TGHLFHIDFGFILGNGP  134 (202)
T ss_pred             HHHHHHHhcCCCCCCCcEEEeC--CCCEEEEechhhhCccc
Confidence            3444555567999999999994  69999999999765443

Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=86.21  E-value=1.1  Score=46.51  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-----CCCeEEEeccccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-----PHRPILLDFGLTKKL   70 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-----~g~lvllDfG~v~~l   70 (729)
                      ..++..++++. .-+...|++|+|.+|.||++..++     .+.+.+.|||.....
T Consensus       120 ~~i~~qi~~~l-~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~  174 (274)
T cd05076         120 ITVAQQLASAL-SYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTA  174 (274)
T ss_pred             HHHHHHHHHHH-HHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCcccccc
Confidence            34555555544 455789999999999999997642     124788999976543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=85.95  E-value=1  Score=48.29  Aligned_cols=46  Identities=15%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+. .-+...|++|+|.+|.||++..+  +++.+.|||....+
T Consensus       106 i~~qi~~~L-~~LH~~~iiH~dlkp~Nil~~~~--~~~~l~~~~~~~~~  151 (327)
T cd08227         106 ILQGVLKAL-DYIHHMGYVHRSVKASHILISVD--GKVYLSGLRSNLSM  151 (327)
T ss_pred             HHHHHHHHH-HHHHHCCEecCCCChhhEEEecC--CcEEEcccchhhcc
Confidence            444444443 45578999999999999999865  78999999866543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=85.56  E-value=0.45  Score=50.87  Aligned_cols=33  Identities=12%  Similarity=0.238  Sum_probs=27.7

Q ss_pred             HHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           35 YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        35 f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ...|+.|+|+|++|++++.+  +.+.+|||-.+.-
T Consensus       194 ~~~~lcHgD~~~~Nvl~~~~--~~~~iIDfd~~~~  226 (309)
T TIGR02904       194 WRTVLVHGKLSLSHFLYDET--RGGYFINFEKASF  226 (309)
T ss_pred             cceeeeCCCCcHHhEEEcCC--CCEEEEEhhhccc
Confidence            35589999999999999754  7899999987653

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=85.44  E-value=0.57  Score=47.94  Aligned_cols=28  Identities=36%  Similarity=0.483  Sum_probs=23.9

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      =+|-||+||+++.+ +|+++-+|||.+-.
T Consensus       140 lgDRH~~NIli~~~-tG~v~HIDfg~~f~  167 (235)
T cd05172         140 IGDRHLSNFLVDLE-TGGLVGIDFGHAFG  167 (235)
T ss_pred             ccCCCcccEEEECC-CCcEEEEeeHhhhc
Confidence            58999999999864 69999999996643

DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=85.42  E-value=0.82  Score=50.35  Aligned_cols=52  Identities=27%  Similarity=0.439  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++ ++.++..|.+|.|..|-|+++....  +++|.+.|||+...+..
T Consensus       138 ~~~~~~il~a-v~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~  191 (382)
T KOG0032|consen  138 AGIIRQILEA-VKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKP  191 (382)
T ss_pred             HHHHHHHHHH-HHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccC
Confidence            3344444444 4555789999999999999988642  35899999999999887

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=85.24  E-value=1.3  Score=45.85  Aligned_cols=47  Identities=19%  Similarity=0.234  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..++.+. .-+...|++|.|..|.|++++.+  +.+.+.|||+....
T Consensus       121 ~~~~~l~~~l-~~LH~~~i~H~dlkp~Nili~~~--~~~~l~~~~~~~~~  167 (275)
T cd05046         121 ALCTQIALGM-DHLSNARFVHRDLAARNCLVSSQ--REVKVSLLSLSKDV  167 (275)
T ss_pred             HHHHHHHHHH-HHhhhcCcccCcCccceEEEeCC--CcEEEccccccccc
Confidence            3444555533 55678999999999999999875  78889999987644

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>PRK10795 penicillin-binding protein 2; Provisional

Probab=85.23  E-value=6.4  Score=46.55  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEE-ecceeEEEeeeeecCCC-----------------CCCCC---CCCCccccc
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAY-KDGEVIIDTSAGMLGRY-----------------DPRPV---QPDSLFPVF  286 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~-~~g~~v~~~~~G~~~~~-----------------~~~p~---~~~t~f~i~  286 (729)
                      ..+...++..+++.++.  -.|++|++= +.|+++.-..+-.-|..                 ...|.   .....|.-|
T Consensus       253 LTID~~lQ~~ae~~l~~--~~ga~Vvmdp~TGeILAmas~P~fdpN~~~~~~~~~~~~~~~~~~~~~~~Nra~~~~y~PG  330 (634)
T PRK10795        253 LTLDLKLQQYIETLLAG--SRAAVVVTDPRTGGILALVSTPSYDPNLFVDGISSKDYSGLLNDPNRPLINRATQGVYPPA  330 (634)
T ss_pred             EEECHHHHHHHHHHHhc--CceEEEEEECCCCcEEEEEecCCCChhhhcCCCCHHHHHHHhcCcCcchhhHHhhcCCCCc
Confidence            44455566666655543  235444332 78998876544222211                 00111   112469999


Q ss_pred             cchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          287 SVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       287 SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      |+=|+||+++.+   |+|.++.++.+.
T Consensus       331 StfK~~t~aaaL---e~g~i~~~~~~~  354 (634)
T PRK10795        331 STVKPYVAVSAL---SAGVITRNTSLF  354 (634)
T ss_pred             chHHHHHHHHHH---HcCCCCCCceEE
Confidence            999999988754   899999998874

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=85.17  E-value=0.89  Score=55.49  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      |..-|.+|.|.+|.||+++.+  +.|.+-|||+...+-.
T Consensus       713 IH~~giIHRDLKP~NIFLd~~--~~VKIGDFGLAt~~~~  749 (1351)
T KOG1035|consen  713 IHDQGIIHRDLKPRNIFLDSR--NSVKIGDFGLATDLKE  749 (1351)
T ss_pred             HHhCceeeccCCcceeEEcCC--CCeeecccccchhhhh
Confidence            468899999999999999864  7899999999877543

>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=84.77  E-value=0.64  Score=47.64  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=25.0

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      =+|-||+||+++.. +|+++-+|||.+-.-
T Consensus       143 igDRh~~NIli~~~-tG~~~HIDfg~~~~~  171 (237)
T cd00892         143 LGDRHGENILFDSN-TGDVVHVDFNCLFDK  171 (237)
T ss_pred             cCCCCcccEEEEcC-CCcEEEEehHhhhcc
Confidence            48999999999974 699999999987653

ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central

>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=84.51  E-value=0.65  Score=48.88  Aligned_cols=26  Identities=27%  Similarity=0.601  Sum_probs=23.6

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEecccc
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLT   67 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v   67 (729)
                      =+|-||+||++..+ +|+++-+|||.+
T Consensus       185 lgDRh~~NIll~~~-tG~v~hiDf~~~  210 (279)
T cd05171         185 LGDRHANNILIDEK-TAEVVHIDLGIA  210 (279)
T ss_pred             cCCCCcccEEEEcC-cCcEEEEechhh
Confidence            48999999999865 699999999998

ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=84.46  E-value=1.6  Score=45.21  Aligned_cols=36  Identities=31%  Similarity=0.370  Sum_probs=31.3

Q ss_pred             ccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807           39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ   76 (729)
Q Consensus        39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~   76 (729)
                      .+|.|.+|+||+++.  +|-+-|=|||+-+-|+.++..
T Consensus       149 VmHRDIKPaNIFl~~--~gvvKLGDfGL~r~l~s~~tf  184 (375)
T KOG0591|consen  149 VMHRDIKPANIFLTA--NGVVKLGDFGLGRFLSSKTTF  184 (375)
T ss_pred             eeeccCcchheEEcC--CCceeeccchhHhHhcchhHH
Confidence            799999999999986  488899999999988877643

>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=84.28  E-value=0.68  Score=46.88  Aligned_cols=29  Identities=31%  Similarity=0.532  Sum_probs=24.9

Q ss_pred             cccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           40 FNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        40 fHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      -=+|-||+||+++.. +|+++-+|||.+-.
T Consensus       131 glgDRh~~NIli~~~-~G~~~hIDfg~~~~  159 (219)
T cd00142         131 GIGDRHPDNIMIDLD-TGKLFHIDFGFIFG  159 (219)
T ss_pred             ccCCCCCccEEEECC-CCeEEEEeeHHhhC
Confidence            458999999999984 59999999998753

Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=84.24  E-value=1  Score=55.28  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=34.5

Q ss_pred             HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           33 QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        33 qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      -+..+|.+|.|++|-||+++..  |-|-+-|||+...+...
T Consensus      1349 ~LH~~gIVHRDIK~aNI~Ld~~--g~iK~~DFGsa~ki~~~ 1387 (1509)
T KOG4645|consen 1349 YLHEHGIVHRDIKPANILLDFN--GLIKYGDFGSAVKIKNN 1387 (1509)
T ss_pred             HHHhcCceecCCCccceeeecC--CcEEeecccceeEecCc
Confidence            3558999999999999999864  78999999999988877

>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]

Probab=84.15  E-value=1.1  Score=46.84  Aligned_cols=44  Identities=20%  Similarity=0.289  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC--CCeEEEecc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP--HRPILLDFG   65 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~--g~lvllDfG   65 (729)
                      +++-..|++..+.|  ...++|.|=||-|++++.+..  +++++|||=
T Consensus       185 ~aiwd~Lid~~~~~--~~vlvhRDfh~~NLmw~~~~~g~~rvGvlDFQ  230 (351)
T COG3178         185 EAIWDGLIDSLLAQ--PKVLVHRDFHSRNLMWTADRAGADRVGVLDFQ  230 (351)
T ss_pred             HHHHHHHHHHHhcC--CceeeeccccCccceecCCccCCCCCceeehh
Confidence            44444555544444  678999999999999998633  489999994

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=84.13  E-value=3.1  Score=41.36  Aligned_cols=48  Identities=17%  Similarity=0.244  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCC--CeEEEec-ccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--RPILLDF-GLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g--~lvllDf-G~v~~   69 (729)
                      -...+++-|.+-++.++....|.+|+||++....+|  ++++||- |.-.-
T Consensus       122 ~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~~~lvlIDG~G~~~~  172 (199)
T PF10707_consen  122 ELRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGEFRLVLIDGLGEKEL  172 (199)
T ss_pred             HHHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCceEEEEEeCCCCccc
Confidence            456667788888899999999999999999876444  5999994 44443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PHA02988 hypothetical protein; Provisional

Probab=83.76  E-value=1.3  Score=46.33  Aligned_cols=48  Identities=21%  Similarity=0.257  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++... ..++. .|..|+|..|.||++..+  +.+-+.|||+...++.
T Consensus       127 i~~~i~~~l-~~lH~~~~~~Hrdlkp~nill~~~--~~~kl~dfg~~~~~~~  175 (283)
T PHA02988        127 MAIDCCKGL-YNLYKYTNKPYKNLTSVSFLVTEN--YKLKIICHGLEKILSS  175 (283)
T ss_pred             HHHHHHHHH-HHHHhcCCCCCCcCChhhEEECCC--CcEEEcccchHhhhcc
Confidence            334444433 33444 488999999999999865  8899999999875543

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=83.75  E-value=1.2  Score=48.15  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.4

Q ss_pred             HHHcCccccCCCCCCeEEecCCCC--CeEEEeccccc
Q 004807           34 IYVDGFFNGDPHPGNFLVSKDPPH--RPILLDFGLTK   68 (729)
Q Consensus        34 if~~GffHaDPHPGNilv~~d~~g--~lvllDfG~v~   68 (729)
                      +..+|.-|.|.+-.||++.-|+|+  .+|+=|||||-
T Consensus       357 L~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL  393 (598)
T KOG4158|consen  357 LHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCL  393 (598)
T ss_pred             HHHccchhhcccccceEEEecCCCCcEEEEcccceee
Confidence            468999999999999999877555  68999999984

>PLN02876 acyl-CoA dehydrogenase

Probab=83.62  E-value=0.69  Score=56.47  Aligned_cols=42  Identities=21%  Similarity=0.268  Sum_probs=32.1

Q ss_pred             cCccccCCCCCCeEEecCCCCC-eEEEecccccccCHHHHHHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHR-PILLDFGLTKKLSSSMKQALA   79 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~-lvllDfG~v~~l~~~~r~~l~   79 (729)
                      ..++|+|.||||+++.++ +++ +++|||.++..=++..=.++.
T Consensus       225 ~~LvHGD~~~~Nvl~~~~-~~~v~aVLDWE~a~~GdPl~DLa~~  267 (822)
T PLN02876        225 TGIVHGDFRIDNLVFHPT-EDRVIGILDWELSTLGNQMCDVAYS  267 (822)
T ss_pred             cceEecCcccccEEEcCC-CCeEEEEEeeeccccCChHHHHHHH
Confidence            469999999999999864 345 489999998876665544443

>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=83.52  E-value=0.7  Score=48.66  Aligned_cols=30  Identities=33%  Similarity=0.470  Sum_probs=25.8

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      =+|-|+||||+++  +|+++=||||.+-...+
T Consensus       143 igDRH~~NILid~--~G~liHIDFG~ilg~~p  172 (289)
T cd00893         143 IKDRHNGNILLDS--DGHIIHIDFGFILDSSP  172 (289)
T ss_pred             ccccCCCceEECC--CCCEEEEehHHhhCcCC
Confidence            3899999999986  49999999999876654

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.

>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=83.47  E-value=0.68  Score=47.26  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             HHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           35 YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        35 f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      +.+=+--+|=||+||++... +|+++=||||++-.
T Consensus       132 ~~yilg~gDRh~~Nili~~~-~g~~~hIDfg~~f~  165 (235)
T PF00454_consen  132 LDYILGLGDRHPGNILIDKK-TGELIHIDFGFIFG  165 (235)
T ss_dssp             HHHHHT-CS--TTTEEE-ET-TSEEEE--HSSCTT
T ss_pred             ceEEEeecCCCchhheeccc-cceeeeEEeHHhhh
Confidence            34445579999999999543 69999999999977

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=83.45  E-value=1.3  Score=46.62  Aligned_cols=55  Identities=20%  Similarity=0.407  Sum_probs=42.0

Q ss_pred             CCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           17 VNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        17 ~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .|.+.+...+.+.+  .+-+..-|+.|.|..|.||+|..+  +.+-++|||...+-...
T Consensus       115 lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~--~~lKi~dfg~ar~e~~~  171 (369)
T KOG0665|consen  115 LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSD--CTLKILDFGLARTEDTD  171 (369)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecch--hheeeccchhhcccCcc
Confidence            34455555544443  455678999999999999999875  78999999998876666

>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=83.30  E-value=0.72  Score=48.65  Aligned_cols=30  Identities=33%  Similarity=0.478  Sum_probs=25.6

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      =+|-|++|||++.  +|+++=||||.+-...+
T Consensus       145 igDRH~~NILi~~--~G~liHIDFG~~fg~~~  174 (293)
T cd05168         145 IKDRHNGNILIDN--DGHIIHIDFGFMLSNSP  174 (293)
T ss_pred             ccccCCCceEEcC--CCCEEEEehHHhhcccc
Confidence            3799999999986  49999999999876544

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII

>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=83.29  E-value=0.72  Score=48.58  Aligned_cols=26  Identities=35%  Similarity=0.636  Sum_probs=23.4

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEecccc
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLT   67 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v   67 (729)
                      =+|-||+||+++.. +|+++-+|||++
T Consensus       185 lgDRH~~NIll~~~-tG~v~HIDfg~~  210 (280)
T cd05169         185 LGDRHPSNIMIDRL-TGKVIHIDFGDC  210 (280)
T ss_pred             ccCCCcceEEEEcC-CCCEEEEecHHH
Confidence            48999999999985 699999999976

TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=83.25  E-value=1.2  Score=45.28  Aligned_cols=51  Identities=22%  Similarity=0.293  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++. ..+...|++|+|.+|.||+++.+ +..+.+.|||....+..
T Consensus       104 ~~~~~~l~~~l-~~lh~~~i~H~dl~~~nil~~~~-~~~~~l~d~~~~~~~~~  154 (257)
T cd08225         104 LSWFVQISLGL-KHIHDRKILHRDIKSQNIFLSKN-GMVAKLGDFGIARQLND  154 (257)
T ss_pred             HHHHHHHHHHH-HHHHHCCcccccCCHHHEEEcCC-CCeEEecccccchhccC
Confidence            33445555544 45578899999999999999865 23468999998877654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=82.90  E-value=1.3  Score=49.37  Aligned_cols=55  Identities=24%  Similarity=0.365  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCC-CCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~~~   74 (729)
                      .++-+++..+...||+       ..+.+|+|.+|-|+++.... =.++-|-|||..+-|.++.
T Consensus       659 gRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks  721 (888)
T KOG4236|consen  659 GRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS  721 (888)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhh
Confidence            3455666666666665       67999999999999987531 2379999999999999864

>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=82.81  E-value=0.72  Score=50.06  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=23.2

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLTK   68 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v~   68 (729)
                      =+|-|+||||++.  +|+++=||||.+-
T Consensus       207 igDRH~~NILi~~--~G~~~HIDFG~il  232 (352)
T cd00891         207 IGDRHNDNIMLTK--TGHLFHIDFGHFL  232 (352)
T ss_pred             ccccCCCceEECC--CCCEEEEehHHhh
Confidence            4899999999985  5999999999874

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c

>PRK09902 hypothetical protein; Provisional

Probab=82.37  E-value=3.3  Score=41.55  Aligned_cols=48  Identities=8%  Similarity=0.066  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .+.+.+.. .++++...|..|+||.+=||+++.+++-.+.||||=-+++
T Consensus       132 ~il~~va~-~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        132 AMLKAVAL-AFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             HHHHHHHH-HHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhccch
Confidence            44444444 3566799999999999999999864222399999955544

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=82.16  E-value=0.59  Score=52.83  Aligned_cols=53  Identities=25%  Similarity=0.409  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHHH-------HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           19 KQKVVEEITRAYAHQIY-------VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif-------~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      |+.+-+.=++.|++||.       ..|.+|.|..-|||+++++  -.|=+=|||+..++..+
T Consensus       112 rk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~--~~VKIgDFGLAt~le~~  171 (592)
T KOG0575|consen  112 RKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNEN--MNVKIGDFGLATQLEYD  171 (592)
T ss_pred             cCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCc--CcEEecccceeeeecCc
Confidence            45556666777777765       7899999999999999864  57888899999999843

>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=81.82  E-value=0.92  Score=46.02  Aligned_cols=30  Identities=27%  Similarity=0.459  Sum_probs=25.4

Q ss_pred             ccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      +-=+|-||+||+++.. +|+++-+|||.+-.
T Consensus       133 lglgDRh~~NIli~~~-tG~v~hIDf~~~~~  162 (222)
T cd05164         133 LGLGDRHLDNILIDRE-TGEVVHIDFGCIFE  162 (222)
T ss_pred             hccCCCCCceEEEECC-CCcEEEEccHHhhc
Confidence            3458999999999984 69999999998743

Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=81.77  E-value=2  Score=48.88  Aligned_cols=50  Identities=28%  Similarity=0.357  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .-++...+++. .-+.....+|.|.+.|||+++-|  |.|-|-|||.......
T Consensus       133 qvvc~q~ldAL-n~LHs~~iIHRDLKAGNiL~Tld--GdirLADFGVSAKn~~  182 (1187)
T KOG0579|consen  133 QVVCYQVLDAL-NWLHSQNIIHRDLKAGNILLTLD--GDIRLADFGVSAKNKS  182 (1187)
T ss_pred             HHHHHHHHHHH-HHHhhcchhhhhccccceEEEec--CcEeeecccccccchh
Confidence            34555555553 33568899999999999999987  8999999998766544

>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=81.26  E-value=1  Score=48.02  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=23.9

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLTK   68 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v~   68 (729)
                      =+|-||+||+++.. +|+++-+|||++-
T Consensus       213 lgDRh~~NIli~~~-tG~v~hiDf~~~f  239 (307)
T cd05170         213 LGDRHLDNVLIDLK-TGEVVHIDYNVCF  239 (307)
T ss_pred             CCCCCCccEEEEcC-CCcEEEEeeHhhh
Confidence            48999999999965 6999999999873

SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno

>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=81.15  E-value=0.96  Score=48.09  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=26.8

Q ss_pred             ccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           39 FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        39 ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +=-+|-|.||||++.+  |+++=||||.+-..++
T Consensus       162 LgigDRHn~NILid~~--G~l~HIDFG~il~~~p  193 (311)
T cd05167         162 LQIKDRHNGNIMIDDD--GHIIHIDFGFIFEISP  193 (311)
T ss_pred             hhccccCccceEEcCC--CCEEEEeeHHhhccCC
Confidence            3358999999999864  9999999999876643

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole

>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=81.12  E-value=18  Score=39.35  Aligned_cols=26  Identities=35%  Similarity=0.566  Sum_probs=23.5

Q ss_pred             ccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807           41 NGDPHPGNFLVSKDPPHRPILLDFGLTK   68 (729)
Q Consensus        41 HaDPHPGNilv~~d~~g~lvllDfG~v~   68 (729)
                      =+|=|+|||+++.  +|+++=||||.+-
T Consensus       206 igDRH~~NILi~~--~G~~~HIDFG~il  231 (350)
T cd00896         206 VGDRHLDNLLLTK--DGKLFHIDFGYIL  231 (350)
T ss_pred             ccccCCCcEEEcC--CCCEEEEEhHHhh
Confidence            4899999999985  5999999999886

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=81.08  E-value=1.8  Score=45.75  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +.....+|.|.+|.|++...+  |-|-+=|||+.+.+...
T Consensus       193 lH~~wilHRDLK~SNLLm~~~--G~lKiaDFGLAR~ygsp  230 (419)
T KOG0663|consen  193 LHDNWILHRDLKTSNLLLSHK--GILKIADFGLAREYGSP  230 (419)
T ss_pred             HhhceeEecccchhheeeccC--CcEEecccchhhhhcCC
Confidence            457788999999999999875  89999999999988766

>TIGR02214 spoVD_pbp stage V sporulation protein D

Probab=80.83  E-value=5.8  Score=46.97  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCC-----C------CCCCCccccccchHHHHH
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPR-----P------VQPDSLFPVFSVTKGITA  294 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~-----p------~~~~t~f~i~SitK~~ta  294 (729)
                      ..+...+++.+++.+......+.++.|+  +.|+++.-.++  .+...+.     +      ..-...|.-||+=|+||+
T Consensus       219 ~~lQ~~ae~~l~~~~~~~~~~~ga~Vvmd~~TG~ILAmas~--p~~dpn~~~~~~~~~~~~n~a~~~~y~PGStfK~~t~  296 (636)
T TIGR02214       219 ENIQYIIEREADKALRERKPKGVSIIVMNPKNGEILGMSNR--PTYDPNDPRDKSPDTARRNRAVSDAYEPGSTFKIITS  296 (636)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCeEEEEccC--CCCCCCcccccCcchhhccceeccccCCchHHHHHHH
Confidence            4555555555555554444444444454  68998765433  2222111     0      012247999999999997


Q ss_pred             HHHHHHHHCCCCCccCch
Q 004807          295 GMLHWLVDNGKLKLEENI  312 (729)
Q Consensus       295 ~~v~~lve~G~l~ldd~v  312 (729)
                      ++.   .|+|.++.++.+
T Consensus       297 ~aa---Le~g~~~~~~~~  311 (636)
T TIGR02214       297 SAA---MEEGIVKESDKF  311 (636)
T ss_pred             HHH---HHcCCCCCCCEE
Confidence            665   478999888876

This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD.

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=80.76  E-value=2.3  Score=46.12  Aligned_cols=38  Identities=32%  Similarity=0.459  Sum_probs=30.7

Q ss_pred             HHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccC
Q 004807           34 IYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLS   71 (729)
Q Consensus        34 if~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~   71 (729)
                      +..-|..|.|.+|-|||+..+ .+-.|-+=|||+.+...
T Consensus       292 LH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g  330 (475)
T KOG0615|consen  292 LHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG  330 (475)
T ss_pred             HHHcCcccccCCcceEEeccCCcceEEEecccchhhccc
Confidence            358999999999999999865 12346778999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	729
3zyt_A	372	Structure Determination Of Esta From Arthrobacter N		2e-17
2qmi_A	447	Structure Of The Octameric Penicillin-Binding Prote		1e-12
1ci9_A	392	Dfp-Inhibited Esterase Estb From Burkholderia Gladi		2e-12
1l0f_A	358	X-Ray Crystal Structure Of Ampc N152h Mutant Beta-L		2e-08
1i5q_A	358	Crystal Structure Of The E. Coli Ampc Beta-Lactamas		4e-08
3iwq_B	358	X-Ray Crystal Structure Of The Extended-Spectrum Am		4e-08
3iwi_A	361	X-Ray Crystal Structure Of The Extended-Spectrum Am		4e-08
3iwo_A	358	X-Ray Crystal Structure Of The Extended-Spectrum Am		5e-08
2p9v_A	358	Structure Of Ampc Beta-Lactamase With Cross-Linked		5e-08
2bls_A	358	Ampc Beta-Lactamase From Escherichia Coli Length =		5e-08
1fsw_A	358	Ampc Beta-Lactamase From E. Coli Complexed With Inh		5e-08
2ffy_B	358	Ampc Beta-Lactamase N289a Mutant In Complex With A		5e-08
3ixd_A	358	X-Ray Crystal Structure Of The Extended-Spectrum Am		5e-08
1pi4_A	358	Structure Of N289a Mutant Of Ampc In Complex With S		5e-08
3s1y_A	371	Amp-C Beta-Lactamase (Pseudomonas Aeruginosa) In Co		5e-08
2wzx_A	371	Amp-C Beta-Lactamase (Pseudomonas Aeruginosa)in Com		5e-08
3fkv_A	358	Ampc K67r Mutant Complexed With Benzo(B)thiophene-2		9e-08
1l0e_A	358	X-Ray Crystal Structure Of Ampc K67q Mutant Beta-La		1e-07
1kvl_A	358	X-Ray Crystal Structure Of Ampc S64g Mutant Beta-La		1e-07
1l0d_A	358	X-Ray Crystal Structure Of Ampc S64d Mutant Beta-La		2e-07
1bls_A	361	Crystallographic Structure Of A Phosphonate Derivat		2e-07
2q9m_A	359	4-Substituted Trinems As Broad Spectrum-Lactamase I		2e-07
1gce_A	364	Structure Of The Beta-Lactamase Of Enterobacter Clo		2e-07
1rgz_A	363	Enterobacter Cloacae Gc1 Class C Beta-Lactamase Com		2e-07
3ixg_A	358	X-Ray Crystal Structure Of The Extended-Spectrum Am		2e-07
3s4x_A	367	Crystal Structure Of The Asn152gly Mutant Of P99 Be		3e-07
2qz6_A	358	First Crystal Structure Of A Psychrophile Class C B		5e-07
1hvb_A	349	Crystal Structure Of Streptomyces R61 Dd-Peptidase		5e-07
1s6r_A	359	908r Class C Beta-Lactamase Bound To Iodo-Acetamido		5e-07
1sde_A	347	Toward Better Antibiotics: Crystal Structure Of D-A		5e-07
1y54_A	361	Crystal Structure Of The Native Class C Beta-Lactam		5e-07
2zj9_A	355	X-Ray Crystal Structure Of Ampc Beta-Lactamase (Amp		6e-07
2zc7_A	359	Crystal Structure Of Class C Beta-Lactamase Act-1 L		6e-07
1fcm_A	358	Crystal Structure Of The E.Coli Ampc Beta-Lactamase		1e-06
1fr1_A	361	Refined Crystal Structure Of Beta-Lactamase From Ci		1e-06
2dns_A	363	The Crystal Structure Of D-Amino Acid Amidase From		1e-06
1zc2_A	361	Crystal Structure Of Plasmid-Encoded Class C Beta-L		2e-06
1rgy_A	360	Citrobacter Freundii Gn346 Class C Beta-Lactamase C		3e-06
3ozh_A	351	Crystal Structure Of Beta-LactamaseD-Alanine Carbox		7e-06
3o3v_A	335	Crystal Structure Of Clbp Peptidase Domain Length =		1e-05
4gdn_A	342	Structure Of Fmta-Like Protein Length = 342		3e-05
3hlc_A	432	Simvastatin Synthase (Lovd) From Aspergillus Terreu		5e-05
3hle_A	432	Simvastatin Synthase (Lovd), From Aspergillus Terre		1e-04
3hl9_A	432	Simvastatin Synthase (Lovd) From Aspergillus Terreu		1e-04

>pdb|3ZYT|A Chain A, Structure Determination Of Esta From Arthrobacter Nitroguajacolicus Rue61a Length = 372

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 251 QVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEE 310
           QV AY  G  ++D S G      P  ++PDS+  VFS +KG+   ++  LV +G+L LE 
Sbjct: 30  QVAAYHRGVKVLDLSGG------PH-IRPDSVTGVFSCSKGMAGLVMALLVQDGELDLEA 82
Query: 311 NIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPE 370
            +   WPEF   GK  I V  +L+H +GL  V   L+      + + +    ++A   P 
Sbjct: 83  EVVKYWPEFGVEGKSSITVAQLLSHRAGLLGVEGGLTLHE---VNNSELAAAKLAELPPL 139
Query: 371 TEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRL 430
            +PG    YH L+ G     +  R +G   QE+ E+ I      +   Y+G+P   ESR 
Sbjct: 140 WKPGTAFGYHALTIGIFMEELCRRITGSTLQEVFEQRIRAVTGAN--FYLGLPESEESRF 197
Query: 431 ASLTIDTD 438
           A      D
Sbjct: 198 AQFRWAAD 205

>pdb|2QMI|A Chain A, Structure Of The Octameric Penicillin-Binding Protein Homologue From Pyrococcus Abyssi Length = 447

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 102/202 (50%), Gaps = 28/202 (13%)
Query: 232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 291
            KL  F+VE   + K+ GI +   KDG+V+     G        P  P++++ + S+TK 
Sbjct: 4   GKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKS 63
Query: 292 ITAGMLHWLVDNGKLKLE---ENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS 348
            TA  +  LV+ G L L+   E   NI  + +  G+  + VHH+L H+SG+ ++    + 
Sbjct: 64  FTALAIMKLVEEGGLSLDDPVEKFVNI--KLRPFGEP-VTVHHLLTHSSGIPSLGYAEAF 120
Query: 349 ENPLLICDWDECLNRIALSAPE--------------TEPGQEQLYHYLSFGW-LCGGIIE 393
            + ++  D     N + +S PE               +PG+   + YL+ G+ L G IIE
Sbjct: 121 IDGMVGGD-----NWLPVSTPEETIAFARDMEKWAVAKPGER--FFYLNTGYVLLGKIIE 173
Query: 394 RASGKKFQEILEEGIIQPLSID 415
           + SG  ++E +++ I++PL ++
Sbjct: 174 KVSGVSYEEYIKKKILEPLGMN 195

>pdb|1CI9|A Chain A, Dfp-Inhibited Esterase Estb From Burkholderia Gladioli Length = 392

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 246 KILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGK 305
           +++G      + GE++   + G+  R   RP++ D+LF + SVTK I A  +  LV  G+
Sbjct: 34  RLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGE 93
Query: 306 LKLEENIANIWPEFKSNGKD----LIKVHHVLNHTSGLHNVSVD----------LSSENP 351
           L L+  +    PEF+    D    L+ +HH+L HTSGL    ++          +S    
Sbjct: 94  LALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGID 153
Query: 352 LLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQP 411
           L   D DE L R+A +     PG    Y  L+   + G ++ERA+G+     ++  + QP
Sbjct: 154 LRDFDLDENLRRLASAPLSFAPGSGWQYS-LALD-VLGAVVERATGQPLAAAVDALVAQP 211
Query: 412 LSI 414
           L +
Sbjct: 212 LGM 214

>pdb|1L0F|A Chain A, X-Ray Crystal Structure Of Ampc N152h Mutant Beta-Lactamase Length = 358

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY + S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYAHSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1I5Q|A Chain A, Crystal Structure Of The E. Coli Ampc Beta-Lactamase Mutant N152a Covalently Acylated With The Inhibitory Beta-Lactam, Moxalactam Length = 358

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYAASSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|3IWQ|B Chain B, X-Ray Crystal Structure Of The Extended-Spectrum Ampc E219k Mutant Beta-Lactamase At 1.84 Angstrom Resolution Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|3IWI|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc Omega Loop Insertion (H210aaa) Mutant Beta-Lactamase At 1.64 Angstrom Resolution Length = 361

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|3IWO|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc Y221g Mutant Beta-Lactamase At 1.90 Angstrom Resolution Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|2P9V|A Chain A, Structure Of Ampc Beta-Lactamase With Cross-Linked Active Site After Exposure To Small Molecule Inhibitor Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|2BLS|A Chain A, Ampc Beta-Lactamase From Escherichia Coli Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1FSW|A Chain A, Ampc Beta-Lactamase From E. Coli Complexed With Inhibitor Cephalothinboronic Acid Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|2FFY|B Chain B, Ampc Beta-Lactamase N289a Mutant In Complex With A Boronic Acid Deacylation Transition State Analog Compound Sm3 Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|3IXD|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc V298e Mutant Beta-Lactamase At 2.64 Angstrom Resolution Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1PI4|A Chain A, Structure Of N289a Mutant Of Ampc In Complex With Sm3, A Phenylglyclboronic Acid Bearing The Cephalothin R1 Side Chain Length = 358

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|3S1Y|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa) In Complex With A Beta- Lactamase Inhibitor Length = 371

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
Query: 265 SAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGK 324
           S G+  + D R V P++LF + SV+K  TA +  + +   K++L++  +  WP  + +  
Sbjct: 42  SYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRF 101
Query: 325 DLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSF 384
           D I +  +  +T+G   +    S +      D  +  +      P   PG ++LY   S 
Sbjct: 102 DGISLLDLATYTAGGLPLQFPDSVQK-----DQAQIRDYYRQWQPTYAPGSQRLYSNPSI 156
Query: 385 GWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           G L G +  R+ G+ F+ ++E+ +   L ++ + ++ +P    ++ A
Sbjct: 157 G-LFGYLAARSLGQPFERLMEQQVFPALGLE-QTHLDVPEAALAQYA 201

>pdb|2WZX|A Chain A, Amp-C Beta-Lactamase (Pseudomonas Aeruginosa)in Complex With Compound M-02 Length = 371

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 7/167 (4%)
Query: 265 SAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGK 324
           S G+  + D R V P++LF + SV+K  TA +  + +   K++L++  +  WP  + +  
Sbjct: 42  SYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRF 101
Query: 325 DLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSF 384
           D I +  +  +T+G   +    S +      D  +  +      P   PG ++LY   S 
Sbjct: 102 DGISLLDLATYTAGGLPLQFPDSVQK-----DQAQIRDYYRQWQPTYAPGSQRLYSNPSI 156
Query: 385 GWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           G L G +  R+ G+ F+ ++E+ +   L ++ + ++ +P    ++ A
Sbjct: 157 G-LFGYLAARSLGQPFERLMEQQVFPALGLE-QTHLDVPEAALAQYA 201

>pdb|3FKV|A Chain A, Ampc K67r Mutant Complexed With Benzo(B)thiophene-2-Boronic Acid (Bzb) Length = 358

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV++  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSRTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1L0E|A Chain A, X-Ray Crystal Structure Of Ampc K67q Mutant Beta-Lactamase Length = 358

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV++  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSQTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1KVL|A Chain A, X-Ray Crystal Structure Of Ampc S64g Mutant Beta-Lactamase In Complex With Substrate And Product Forms Of Cephalothin Length = 358

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF +  V+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGGVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase Length = 358

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF +  V+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGDVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1BLS|A Chain A, Crystallographic Structure Of A Phosphonate Derivative Of The Enterobacter Cloacae P99 Cephalosporinase: Mechanistic Interpretation Of A Beta-Lactamase Transition State Analog Length = 361

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L++ +   WP+        I++  +  
Sbjct: 52  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDAVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 335 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIER 394
           +T+G       L  + P  + D    L       P+ +PG  +LY   S G L G +  +
Sbjct: 112 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG-LFGALAVK 164
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
            SG  +++ +   +++PL +D   +I +P   E+  A
Sbjct: 165 PSGMPYEQAMTTRVLKPLKLD-HTWINVPKAEEAHYA 200

>pdb|2Q9M|A Chain A, 4-Substituted Trinems As Broad Spectrum-Lactamase Inhibitors: Structure-Based Design, Synthesis And Biological Activity Length = 359

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L++ +   WP+        I++  +  
Sbjct: 51  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDAVTRYWPQLTGKQWQGIRMLDLAT 110
Query: 335 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIER 394
           +T+G       L  + P  + D    L       P+ +PG  +LY   S G L G +  +
Sbjct: 111 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG-LFGALAVK 163
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
            SG  +++ +   +++PL +D   +I +P   E+  A
Sbjct: 164 PSGMPYEQAMTTRVLKPLKLD-HTWINVPKAEEAHYA 199

>pdb|1GCE|A Chain A, Structure Of The Beta-Lactamase Of Enterobacter Cloacae Gc1 Length = 364

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L++ +   WP+        I++  +  
Sbjct: 52  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 335 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIER 394
           +T+G       L  + P  + D    L       P+ +PG  +LY   S G L G +  +
Sbjct: 112 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG-LFGALAVK 164
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
            SG  +++ +   +++PL +D   +I +P   E+  A
Sbjct: 165 PSGMPYEQAMTTRVLKPLKLD-HTWINVPKAEEAHYA 200

>pdb|1RGZ|A Chain A, Enterobacter Cloacae Gc1 Class C Beta-Lactamase Complexed With Transition-State Analog Of Cefotaxime Length = 363

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L++ +   WP+        I++  +  
Sbjct: 51  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 110
Query: 335 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIER 394
           +T+G       L  + P  + D    L       P+ +PG  +LY   S G L G +  +
Sbjct: 111 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG-LFGALAVK 163
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
            SG  +++ +   +++PL +D   +I +P   E+  A
Sbjct: 164 PSGMPYEQAMTTRVLKPLKLD-HTWINVPKAEEAHYA 199

>pdb|3IXG|A Chain A, X-Ray Crystal Structure Of The Extended-Spectrum Ampc T70i Mutant Beta-Lactamase With And Without Benzo(B)thiophene-2- Boronic Acid Bound At 2.14 Angstrom Resolution Length = 358

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K     +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFIGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|3S4X|A Chain A, Crystal Structure Of The Asn152gly Mutant Of P99 Beta-lactamase Length = 367

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 8/157 (5%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L++ +   WP+        I++  +  
Sbjct: 52  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 335 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIER 394
           +T+G       L  + P  + D    L       P+ +PG  +LY   S G L G +  +
Sbjct: 112 YTAG------GLPLQVPDEVTDNASLLRFYQNWQPQWKPGTTRLYAGASIG-LFGALAVK 164
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
            SG  +++ +   +++PL +D   +I +P   E+  A
Sbjct: 165 PSGMPYEQAMTTRVLKPLKLD-HTWINVPKAEEAHYA 200

>pdb|2QZ6|A Chain A, First Crystal Structure Of A Psychrophile Class C Beta- Lactamase Length = 358

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 247 ILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL 306
           I G+ V   ++G+     + G+  +   +P+  ++LF + SV+K  TA +  + + NGKL
Sbjct: 21  IAGLSVAVIQNGKAQY-FNYGVANKDSKQPITENTLFEIGSVSKTFTATLAGYALANGKL 79
Query: 307 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIAL 366
           KL +  +   P  + +  D I + ++  +T+G   +     S+N   +  + +       
Sbjct: 80  KLSDPASQYLPALRGDKFDHISLLNLGTYTAGGLPLQFPEESDNTGKMISYYQHWK---- 135
Query: 367 SAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIP 423
             P   PG ++LY   S G L G +  ++ G+ F++++E+ ++  L +    +I +P
Sbjct: 136 --PAFAPGTQRLYSNPSIG-LFGHLAAQSLGQPFEKLMEQTVLPKLGLK-HTFISVP 188

>pdb|1HVB|A Chain A, Crystal Structure Of Streptomyces R61 Dd-Peptidase Complexed With A Novel Cephalosporin Analog Of Cell Wall Peptidoglycan Length = 349

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 257 DGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIW 316
           D   I   S G+  R   R +     F V SVTK  +A +L  LVD GKL L+ ++    
Sbjct: 32  DNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVNTYL 91
Query: 317 PEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNR-------IALS-- 367
           P    +  D I V  V++H SGL++ + D+ ++    +  ++   N+       I LS  
Sbjct: 92  PGLLPD--DRITVRQVMSHRSGLYDYTNDMFAQT---VPGFESVRNKVFSYQDLITLSLK 146
Query: 368 -APETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
                 PG    Y   +F  + G +IE+ +G       +  I  PL++    Y+
Sbjct: 147 HGVTNAPGAAYSYSNTNF-VVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYV 199

>pdb|1S6R|A Chain A, 908r Class C Beta-Lactamase Bound To Iodo-Acetamido-Phenyl Boronic Acid Length = 359

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L++ +   WP+        I++  +  
Sbjct: 50  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 109
Query: 335 HTSGLHNVSV-DLSSENPLLI---CDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V D  ++N  L+    +W           P+ +PG  +LY   S G L G 
Sbjct: 110 YTAGGLPLQVPDEVTDNASLVRFYQNWQ----------PQWKPGTTRLYANASIG-LFGA 158
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  +++ +   +++PL +D   +I +P   E+  A
Sbjct: 159 LAVKPSGMPYEQAMTTRVLKPLKLD-HTWINVPKAEEAHYA 198

>pdb|1SDE|A Chain A, Toward Better Antibiotics: Crystal Structure Of D-Ala-D-Ala Peptidase Inhibited By A Novel Bicyclic Phosphate Inhibitor Length = 347

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 257 DGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIW 316
           D   I   S G+  R   R +     F V SVTK  +A +L  LVD GKL L+ ++    
Sbjct: 32  DNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASVNTYL 91
Query: 317 PEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNR-------IALS-- 367
           P    +  D I V  V++H SGL++ + D+ ++    +  ++   N+       I LS  
Sbjct: 92  PGLLPD--DRITVRQVMSHRSGLYDYTNDMFAQT---VPGFESVRNKVFSYQDLITLSLK 146
Query: 368 -APETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYI 420
                 PG    Y   +F  + G +IE+ +G       +  I  PL++    Y+
Sbjct: 147 HGVTNAPGAAYSYSNTNF-VVAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYV 199

>pdb|1Y54|A Chain A, Crystal Structure Of The Native Class C Beta-Lactamase From Enterobacter Cloacae 908r Complexed With Brl42715 Length = 361

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L++ +   WP+        I++  +  
Sbjct: 52  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLAT 111
Query: 335 HTSGLHNVSV-DLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIE 393
           +T+G   + V D  ++N  L+  +           P+ +PG  +LY   S G L G +  
Sbjct: 112 YTAGGLPLQVPDEVTDNASLVRFYQNW-------QPQWKPGTTRLYANASIG-LFGALAV 163
Query: 394 RASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           + SG  +++ +   +++PL +D   +I +P   E+  A
Sbjct: 164 KPSGMPYEQAMTTRVLKPLKLD-HTWINVPKAEEAHYA 200

>pdb|2ZJ9|A Chain A, X-Ray Crystal Structure Of Ampc Beta-Lactamase (Ampc(D)) From An Escherichia Coli With A Tripeptide Deletion (Gly286 Ser287 Asp288) On The H10 Helix Length = 355

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSGLHNVSV--DLSSENPLL--ICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G   + V  ++ S + LL    +W           P   PG ++LY   S G L G 
Sbjct: 109 YTAGGLPLQVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLYANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +P   E   A
Sbjct: 158 LAVKPSGLSFEQAMKTRVFQPLKLN-HTWINVPSAEEKNYA 197

>pdb|2ZC7|A Chain A, Crystal Structure Of Class C Beta-Lactamase Act-1 Length = 359

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 8/157 (5%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV P +LF + S++K  T  +    +  G++ L + +   WPE        I++  +  
Sbjct: 51  KPVTPQTLFELGSISKTFTGVLGGDAIARGEISLGDPVTKYWPELTGKQWQGIRMLDLAT 110
Query: 335 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIER 394
           +T+G       L  + P  + D    L       P+ +PG  +LY   S G L G +  +
Sbjct: 111 YTAG------GLPLQVPDEVKDNASLLRFYQNWQPQWKPGTTRLYANASIG-LFGALAVK 163
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
            SG  +++ +   + +PL +D   +I +P   E+  A
Sbjct: 164 PSGMSYEQAITTRVFKPLKLD-HTWINVPKAEEAHYA 199

>pdb|1FCM|A Chain A, Crystal Structure Of The E.Coli Ampc Beta-Lactamase Mutant Q120lY150E Covalently Acylated With The Inhibitory Beta-Lactam, Cloxacillin Length = 358

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 16/161 (9%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           +PV   +LF + SV+K  T  +    +  G++KL +     WPE  +   + I + H+  
Sbjct: 49  QPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLAT 108
Query: 335 HTSG----LHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
           +T+G    L    V  SS+      +W           P   PG ++L    S G L G 
Sbjct: 109 YTAGGLPLLVPDEVKSSSDLLRFYQNWQ----------PAWAPGTQRLEANSSIG-LFGA 157
Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLA 431
           +  + SG  F++ ++  + QPL ++   +I +PP  E   A
Sbjct: 158 LAVKPSGLSFEQAMQTRVFQPLKLN-HTWINVPPAEEKNYA 197

>pdb|1FR1|A Chain A, Refined Crystal Structure Of Beta-Lactamase From Citrobacter Freundii Indicates A Mechanism For Beta-Lactam Hydrolysis Length = 361

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLN 334
           RPV   +LF + SV+K     +    +  G++KL + +   WPE        I + H+  
Sbjct: 52  RPVTQQTLFELGSVSKTFNGVLGGDAIARGEIKLSDPVTQYWPELTGKQWQGISLLHLAT 111
Query: 335 HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIER 394
           +T+G       L  + P  + D    L       P+  PG ++LY   S G L G +  +
Sbjct: 112 YTAG------GLPLQVPDDVTDKAALLRFYQNWQPQWAPGAKRLYANSSIG-LFGALAVK 164
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYIGIP 423
            SG  ++E + + ++ PL +    +I +P
Sbjct: 165 PSGMSYEEAMSKRVLHPLKL-AHTWITVP 192

>pdb|2DNS|A Chain A, The Crystal Structure Of D-Amino Acid Amidase From Ochrobactrum Anthropi Sv3 Complexed With D-Phenylalanine Length = 363

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 12/172 (6%)
Query: 247 ILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL 306
           ++G+ +     GE      +G   +++  P+  D LF + S TK   A  LH LV +G +
Sbjct: 20  VVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTV 79
Query: 307 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICD--W--DECLN 362
            L+E I   +P+     +  +++  +LNH SGL     D  +  P+ I D  W   E ++
Sbjct: 80  DLDEPITRWFPDLPKAAQMPVRI--LLNHRSGL----PDFETSMPM-ISDKSWTAQEIVD 132
Query: 363 RIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSI 414
                  + EP     Y    +  L G II   +GK + + L   I  PL +
Sbjct: 133 FSFRHGVQKEPWHGMEYSNTGYV-LAGMIIAHETGKPYSDHLRSRIFAPLGM 183

>pdb|1ZC2|A Chain A, Crystal Structure Of Plasmid-Encoded Class C Beta-Lactamase Cmy-2 Complexed With Citrate Molecule Length = 361

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 276 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH 335
           PV   +LF + SV+K     +    +  G++KL + +   WPE        I++ H+  +
Sbjct: 53  PVTQQTLFELGSVSKTFNGVLGGDAIARGEIKLSDPVTKYWPELTGKQWQGIRLLHLATY 112
Query: 336 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERA 395
           T+G       L  + P  + D    L+      P+  PG ++LY   S G L G +  + 
Sbjct: 113 TAG------GLPLQIPDDVRDKAALLHFYQNWQPQWTPGAKRLYANSSIG-LFGALAVKP 165
Query: 396 SGKKFQEILEEGIIQPLSIDGELYIGIP 423
           SG  ++E +   ++QPL +    +I +P
Sbjct: 166 SGMSYEEAMTRRVLQPLKL-AHTWITVP 192

>pdb|1RGY|A Chain A, Citrobacter Freundii Gn346 Class C Beta-Lactamase Complexed With Transition-State Analog Of Cefotaxime Length = 360

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 276 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH 335
           PV   +LF + SV+K     +    +  G++KL + +   WPE        I + H+  +
Sbjct: 52  PVTQQTLFELGSVSKTFNGVLGGDAIARGEIKLSDPVTKYWPELTGKQWRGISLLHLATY 111
Query: 336 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERA 395
           T+G       L  + P  I D    L       P+  PG ++LY   S G L G +  + 
Sbjct: 112 TAG------GLPLQIPDDITDKAALLRFYQNWQPQWTPGAKRLYANSSIG-LFGALAVKP 164
Query: 396 SGKKFQEILEEGIIQPLSIDGELYIGIP 423
           SG  ++E +   ++QPL +    +I +P
Sbjct: 165 SGMSYEEAMTRRVLQPLKL-AHTWITVP 191

>pdb|3OZH|A Chain A, Crystal Structure Of Beta-LactamaseD-Alanine Carboxypeptidase From Yersinia Pestis Length = 351

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 275 RPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEF----KSNGKDLIKVH 330
           RP +PDSL  + S+TK  T+ +   L D+G +KL + +    P+       + K  I++ 
Sbjct: 51  RP-RPDSLIRIASITKLXTSEIXVKLADDGIVKLTDPLKKYAPKGVNVPSYSAKQPIRLL 109
Query: 331 HVLNHTSGLHNVSVDLSSENPLLICDWDECLNR---IALSAPETEPGQEQLYHYLSFGWL 387
           H+ +HTSGL         + P+    W    NR   + L+     PG +  Y  L++  L
Sbjct: 110 HLASHTSGLPREQPGGPQKRPVFT--WPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYD-L 166
Query: 388 CGGIIERASGKKFQEILEEGIIQPL 412
               + RA+GK +  +L + I  PL
Sbjct: 167 LADALSRAAGKPYAHLLRDKITAPL 191

>pdb|3O3V|A Chain A, Crystal Structure Of Clbp Peptidase Domain Length = 335

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 280 DSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSN--GKDL-IKVHHVLNHT 336
           D+++ + S++K  T  ++  L+  G+L+  ++I    PE + N  GK   + V   L HT
Sbjct: 48  DTVYELGSMSKAFTGLVVQILIQEGRLRQGDDIITYLPEMRLNYQGKPASLTVADFLYHT 107
Query: 337 SGLHNVSVDLSSENPLLICDWDECL-NRIALSAPETEPGQEQLYHYLSFGW-LCGGIIER 394
           SGL   S     ENP+      + L N   L AP  +      + Y S  + + G +IE 
Sbjct: 108 SGLP-FSTLARLENPMPGSAVAQQLRNENLLFAPGAK------FSYASANYDVLGAVIEN 160
Query: 395 ASGKKFQEILEEGIIQPLSIDGELYI 420
            +GK F E++ E + QPL +   + +
Sbjct: 161 VTGKTFTEVIAERLTQPLGMSATVAV 186

>pdb|4GDN|A Chain A, Structure Of Fmta-Like Protein Length = 342

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 80/177 (45%), Gaps = 13/177 (7%)
Query: 245 GKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNG 304
           G I G  +   K+G+V ++   G           P + + + S TK  T   +  L   G
Sbjct: 26  GHIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTKYEIASNTKAFTGLAILKLAQEG 85
Query: 305 KLKLEENIANIWPEFKSN---GKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECL 361
           +L L ++++   P FK N     + I +  +L  TSG   +  D++SE+   + + +  L
Sbjct: 86  RLNLNDDVSKHVPHFKMNYNGQNETITIKQLLAQTSG---IPSDITSEDA--VTNKNNRL 140
Query: 362 NRIALSAPETE----PGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSI 414
           N +  +    E    PG+E  Y  +++  L G II+  + + + + +    ++PL +
Sbjct: 141 NDVTRAIMGDELHHKPGEEFEYSNMNYD-LLGLIIQNVTKQSYTKYITNSWLKPLHM 196

>pdb|3HLC|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus, S5 Mutant, Unliganded Length = 432

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 276 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKS-------------- 321
           P+Q D+   + S TK +T  M+   ++ G + L+E +  + P+  +              
Sbjct: 84  PLQVDTPCRLASATKLLTTIMVLQCMERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNAR 143
Query: 322 --NGKDLIKVHHVLNHTSGL-----HNVSVDLSSENPLLICDWDECLNRIALSAPETEPG 374
               +  I + H+L HTSGL     H +  +  ++  L   +     +R+A  A   +PG
Sbjct: 144 LRERRGKITLRHLLTHTSGLSYVFLHPLLREYMAQGYLQSAEKFGIQSRLAPPA-VNDPG 202
Query: 375 QEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSI 414
            E +Y   +  W  G ++ERA+G   ++ L+E I  PL I
Sbjct: 203 AEWIYG-TNLDW-AGKLVERATGLDLEQYLQENICAPLGI 240

>pdb|3HLE|A Chain A, Simvastatin Synthase (Lovd), From Aspergillus Terreus, S5 Mutant, S76a Mutant, Complex With Monacolin J Acid Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 276 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKS-------------- 321
           P+Q D+   + + TK +T  M+   ++ G + L+E +  + P+  +              
Sbjct: 84  PLQVDTPCRLAAATKLLTTIMVLQCMERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNAR 143
Query: 322 --NGKDLIKVHHVLNHTSGL-----HNVSVDLSSENPLLICDWDECLNRIALSAPETEPG 374
               +  I + H+L HTSGL     H +  +  ++  L   +     +R+A  A   +PG
Sbjct: 144 LRERRGKITLRHLLTHTSGLSYVFLHPLLREYMAQGYLQSAEKFGIQSRLAPPA-VNDPG 202
Query: 375 QEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSI 414
            E +Y   +  W  G ++ERA+G   ++ L+E I  PL I
Sbjct: 203 AEWIYG-TNLDW-AGKLVERATGLDLEQYLQENICAPLGI 240

>pdb|3HL9|A Chain A, Simvastatin Synthase (Lovd) From Aspergillus Terreus, Unliganded Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 24/160 (15%)
Query: 276 PVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKS-------------- 321
           P+Q D+   + S TK +T  M    ++ G + L+E +  + P+  +              
Sbjct: 84  PLQVDTPCRLASATKLLTTIMALQCMERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNAR 143
Query: 322 --NGKDLIKVHHVLNHTSGL-----HNVSVDLSSENPLLICDWDECLNRIALSAPETEPG 374
               +  I + H+L HTSGL     H +  +  ++  L   +     +R+A  A   +PG
Sbjct: 144 LRERRGKITLRHLLTHTSGLSYVFLHPLLREYMAQGHLQSAEKFGIQSRLAPPA-VNDPG 202
Query: 375 QEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSI 414
            E +Y   +  W  G ++ERA+G   ++ L+E I  PL I
Sbjct: 203 AEWIYGA-NLDW-AGKLVERATGLDLEQYLQENICAPLGI 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	729
2qz6_A	358	Beta-lactamase; psychrophIle, cold adaptation, ant	3e-32
2wzx_A	371	Beta-lactamase; inhibitor, hydrolase, antibiotic r	9e-32
2ffy_A	358	Beta-lactamase; AMPC, deacylation, transition stat	2e-31
2drw_A	363	DAA, D-amino acid amidase; penicillin recognizing	3e-30
1zkj_A	359	CMY-10, extended-spectrum beta-lactamase; plasmid,	8e-30
1ci9_A	392	ESTB, protein (carboxylesterase); hydrolase, cabox	2e-29
3o3v_A	335	Beta-lactamase, CLBP protein; alpha/beta, disulfid	6e-28
3rju_A	351	Beta-lactamase/D-alanine carboxypeptidase; structu	1e-27
1yqs_A	349	D-alanyl-D-alanine carboxypeptidase; cell well bio	2e-26
2qmi_A	447	PBP related beta-lactamase; PAB87, octamer, LU-HPD	2e-26
1ei5_A	520	D-aminopeptidase, DAP; penicillin binding protein,	2e-25
3tg9_A	356	Penicillin-binding protein; structural genomics, P	1e-24
3hlc_A	432	Transesterase, LOVD; alpha/beta hydrolase fold, tr	5e-23
2dcf_A	392	6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.	2e-20
4gb7_A	422	6-aminohexanoate-dimer hydrolase; structural genom	1e-19
3i7j_A	280	Beta-lactamase MB2281C; alpha-beta protein., struc	3e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10

>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens} Length = 358

 Score =  127 bits (321), Expect = 3e-32
 Identities = 41/185 (22%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFS 287
           +D+   +   +  L     I G+ V   ++G+     + G+  +   +P+  ++LF + S
Sbjct: 2   TDIRQVVDSTVEPLMQQQDIAGLSVAVIQNGKAQY-FNYGVANKDSKQPITENTLFEIGS 60

Query: 288 VTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLS 347
           V+K  TA +  + + NGKLKL +  +   P  + +  D I + ++  +T+G   +     
Sbjct: 61  VSKTFTATLAGYALANGKLKLSDPASQYLPALRGDKFDHISLLNLGTYTAGGLPLQFPEE 120

Query: 348 SENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEG 407
           S+N        + ++      P   PG ++LY   S G L G +  ++ G+ F++++E+ 
Sbjct: 121 SDNT------GKMISYYQHWKPAFAPGTQRLYSNPSIG-LFGHLAAQSLGQPFEKLMEQT 173

Query: 408 IIQPL 412
           ++  L
Sbjct: 174 VLPKL 178

>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* 3s1y_A* 3s22_A* Length = 371

 Score =  126 bits (318), Expect = 9e-32
 Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 7/184 (3%)

Query: 229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSV 288
            ++A +   +  +     I G+ V     GE     S G+  + D R V P++LF + SV
Sbjct: 7   RLKALVDAAVQPVMKANDIPGLAVAISLKGEPHY-FSYGLASKEDGRRVTPETLFEIGSV 65

Query: 289 TKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS 348
           +K  TA +  + +   K++L++  +  WP  + +  D I +  +  +T+G   +    S 
Sbjct: 66  SKTFTATLAGYALTQDKMRLDDRASQHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSV 125

Query: 349 ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGI 408
           +      D  +  +      P   PG ++LY   S G L G +  R+ G+ F+ ++E+ +
Sbjct: 126 QK-----DQAQIRDYYRQWQPTYAPGSQRLYSNPSIG-LFGYLAARSLGQPFERLMEQQV 179

Query: 409 IQPL 412
              L
Sbjct: 180 FPAL 183

>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ... Length = 358

 Score =  125 bits (315), Expect = 2e-31
 Identities = 53/304 (17%), Positives = 103/304 (33%), Gaps = 46/304 (15%)

Query: 229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSV 288
            +   +   +  L    KI G+ V     G+     + G       +PV   +LF + SV
Sbjct: 4   QINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYY-FTWGYADIAKKQPVTQQTLFELGSV 62

Query: 289 TKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS 348
           +K  T  +    +  G++KL +     WPE  +   + I + H+  +T+G       L  
Sbjct: 63  SKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLATYTAGG------LPL 116

Query: 349 ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGI 408
           + P  +    + L       P   PG ++LY   S G L G +  + SG  F++ ++  +
Sbjct: 117 QVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG-LFGALAVKPSGLSFEQAMQTRV 175

Query: 409 IQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAA 468
            QPL ++   +I +PP  E   A                              +  +   
Sbjct: 176 FQPLKLN-HTWINVPPAEEKNYA---------------------------WGYREGKAVH 207

Query: 469 ITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIP 528
           ++P   +          A     +   +AR+  +      +      L +    +     
Sbjct: 208 VSPGALDA--------EAYGVKSTIEDMARWVQSNLKPLDINE--KTLQQGIQLAQSRYW 257

Query: 529 KFPS 532
           +   
Sbjct: 258 QTGD 261

>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A* Length = 363

 Score =  121 bits (306), Expect = 3e-30
 Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 20/285 (7%)

Query: 228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFS 287
           SD+   ++  L +    G ++G+ +     GE      +G   +++  P+  D LF + S
Sbjct: 2   SDLNNAIQGILDDHVARG-VVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIAS 60

Query: 288 VTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLS 347
            TK   A  LH LV +G + L+E I   +P+        + V  +LNH SGL +    + 
Sbjct: 61  CTKSFIATGLHLLVQDGTVDLDEPITRWFPDLP--KAAQMPVRILLNHRSGLPDFETSM- 117

Query: 348 SENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGW-LCGGIIERASGKKFQEILEE 406
                      E ++       + EP       Y + G+ L G II   +GK + + L  
Sbjct: 118 PMISDKSWTAQEIVDFSFRHGVQKEPWHG--MEYSNTGYVLAGMIIAHETGKPYSDHLRS 175

Query: 407 GIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQL 466
            I  PL +              R A             G  +         +        
Sbjct: 176 RIFAPLGMKDTWVGTHETFPIEREA------------RGYMHAAADDENPQWDVSGAGDP 223

Query: 467 AAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPP 511
                       +  A   A +   + R + ++  AL DG ++  
Sbjct: 224 VDGVWDSTEWFPLSGA-NAAGDMVSTPRDIVKFLNALFDGRILDQ 267

>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes} Length = 359

 Score =  120 bits (303), Expect = 8e-30
 Identities = 37/184 (20%), Positives = 77/184 (41%), Gaps = 8/184 (4%)

Query: 229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSV 288
            +   +   +  L  + +I G+ V   KDG+     + G+  R     V   +LF + SV
Sbjct: 8   PLRPVVDASIQPLLKEHRIPGMAVAVLKDGKAHY-FNYGVANRESGAGVSEQTLFEIGSV 66

Query: 289 TKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS 348
           +K +TA +  + V  G ++L++  +   P  K +  D I +  +  +++G   +      
Sbjct: 67  SKTLTATLGAYAVVKGAMQLDDKASRHAPWLKGSAFDSITMGELATYSAGGLPLQFPEEV 126

Query: 349 ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGI 408
           ++       ++        AP   PG  + Y   S G L G +   +  + F  ++E+ +
Sbjct: 127 DSS------EKMRAYYRQWAPVYSPGSHRQYSNPSIG-LFGHLAASSLKQPFAPLMEQTL 179

Query: 409 IQPL 412
           +  L
Sbjct: 180 LPGL 183

>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A* Length = 392

 Score =  120 bits (303), Expect = 2e-29
 Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 28/202 (13%)

Query: 231 EAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTK 290
            A+L     +   + +++G      + GE++   + G+  R   RP++ D+LF + SVTK
Sbjct: 19  AARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTK 78

Query: 291 GIT--AGMLHWLVDNGKLKLEENIANIWPEFK----SNGKDLIKVHHVLNHTSGL----- 339
            I   A +   LV  G+L L+  +    PEF+       + L+ +HH+L HTSGL     
Sbjct: 79  PIVALAVLR--LVARGELALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLL 136

Query: 340 ---------HNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGG 390
                      +S  +   +     D DE L R+A +     PG    Y  L+   L G 
Sbjct: 137 EGAGSVYDRLGISDGIDLRDF----DLDENLRRLASAPLSFAPGSGWQYS-LALDVL-GA 190

Query: 391 IIERASGKKFQEILEEGIIQPL 412
           ++ERA+G+     ++  + QPL
Sbjct: 191 VVERATGQPLAAAVDALVAQPL 212

>3o3v_A Beta-lactamase, CLBP protein; alpha/beta, disulfide bridge, hydrolase; 2.40A {Escherichia coli} Length = 335

 Score =  114 bits (287), Expect = 6e-28
 Identities = 49/307 (15%), Positives = 101/307 (32%), Gaps = 41/307 (13%)

Query: 233 KLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGI 292
           +L   + +   + K+  + V     G        G+      +    D+++ + S++K  
Sbjct: 2   RLSTLIHQRMQEAKVPALSVSVTIKGVRQRFV-YGVADVASQKANTLDTVYELGSMSKAF 60

Query: 293 TAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDL---IKVHHVLNHTSGLHNVSVDLSSE 349
           T  ++  L+  G+L+  ++I    PE + N +     + V   L HTSGL   ++     
Sbjct: 61  TGLVVQILIQEGRLRQGDDIITYLPEMRLNYQGKPASLTVADFLYHTSGLPFSTLARLEN 120

Query: 350 NPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGII 409
                        ++        PG +  Y   ++  + G +IE  +GK F E++ E + 
Sbjct: 121 PM----PGSAVAQQLRNENLLFAPGAKFSYASANYD-VLGAVIENVTGKTFTEVIAERLT 175

Query: 410 QPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAI 469
           QPL +                A++ +  D++          +          K     A 
Sbjct: 176 QPLGMS---------------ATVAVKGDEI--------IVNKASGYKLGFGKPVLFHAP 212

Query: 470 TPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPK 529
                      R  +PAA  H +   +  +  A      +P             +  +P 
Sbjct: 213 LA---------RNHVPAAYIHSTLPDMEIWIDAWLHRKALPATLREAMSNSWRGNSDVPL 263

Query: 530 FPSHETS 536
              +   
Sbjct: 264 AADNRIL 270

>3rju_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE CIT; 1.50A {Yersinia pestis} PDB: 3ozh_A* Length = 351

 Score =  114 bits (286), Expect = 1e-27
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 7/188 (3%)

Query: 230 VEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVT 289
               +  +   +  +   +G+ +    + +V+   S G     +    +PDSL  + S+T
Sbjct: 6   TSQIVDQYAEHIFYNSGAVGMALVVIDNNQVVNR-SFGETQPGNNIRPRPDSLIRIASIT 64

Query: 290 KGITAGMLHWLVDNGKLKLEENIANIWPEFKS----NGKDLIKVHHVLNHTSGLHNVSVD 345
           K +T+ ++  L D+G +KL + +    P+  +    + K  I++ H+ +HTSGL      
Sbjct: 65  KLMTSEIMVKLADDGIVKLTDPLKKYAPKGVNVPSYSAKQPIRLLHLASHTSGLPREQPG 124

Query: 346 LSSENPLLI-CDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEIL 404
              + P+      D     + L+     PG +  Y  L++  L    + RA+GK +  +L
Sbjct: 125 GPQKRPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNLAYD-LLADALSRAAGKPYAHLL 183

Query: 405 EEGIIQPL 412
            + I  PL
Sbjct: 184 RDKITAPL 191

>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A* Length = 349

 Score =  110 bits (276), Expect = 2e-26
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 14/189 (7%)

Query: 232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 291
             L+  L    + G   G  V    D   I   S G+  R   R +     F V SVTK 
Sbjct: 9   TGLQAVLHTALSQG-APGAMV-RVDDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKS 66

Query: 292 ITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSE-- 349
            +A +L  LVD GKL L+ ++    P    + +  I V  V++H SGL++ + D+ ++  
Sbjct: 67  FSAVVLLQLVDEGKLDLDASVNTYLPGLLPDDR--ITVRQVMSHRSGLYDYTNDMFAQTV 124

Query: 350 -----NPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGW-LCGGIIERASGKKFQEI 403
                    +  + + +           PG    Y Y +  + + G +IE+ +G      
Sbjct: 125 PGFESVRNKVFSYQDLITLSLKHGVTNAPGAA--YSYSNTNFVVAGMLIEKLTGHSVATE 182

Query: 404 LEEGIIQPL 412
            +  I  PL
Sbjct: 183 YQNRIFTPL 191

>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi} Length = 447

 Score =  111 bits (280), Expect = 2e-26
 Identities = 50/191 (26%), Positives = 93/191 (48%), Gaps = 12/191 (6%)

Query: 232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 291
            KL  F+VE   + K+ GI +   KDG+V+     G        P  P++++ + S+TK 
Sbjct: 4   GKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKS 63

Query: 292 ITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENP 351
            TA  +  LV+ G L L++ +            + + VHH+L H+SG+ ++    +  + 
Sbjct: 64  FTALAIMKLVEEGGLSLDDPVEKFVNIKLRPFGEPVTVHHLLTHSSGIPSLGYAEAFIDG 123

Query: 352 LLICDW-------DECLNRIALSAPET--EPGQEQLYHYLSFGW-LCGGIIERASGKKFQ 401
           ++  D        +E +            +PG+   + YL+ G+ L G IIE+ SG  ++
Sbjct: 124 MVGGDNWLPVSTPEETIAFARDMEKWAVAKPGER--FFYLNTGYVLLGKIIEKVSGVSYE 181

Query: 402 EILEEGIIQPL 412
           E +++ I++PL
Sbjct: 182 EYIKKKILEPL 192

>1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1 Length = 520

 Score =  109 bits (275), Expect = 2e-25
 Identities = 51/284 (17%), Positives = 93/284 (32%), Gaps = 44/284 (15%)

Query: 232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 291
           + L  F+  +  + K  G  V   KDGEV++  + G        P+  D+  P+ SV+K 
Sbjct: 7   SALEAFVRHIPQNYKGPGGVVAVVKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQ 66

Query: 292 ITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENP 351
            T  +L   V   +L L++ +     +F+        V  + N+ SGL +          
Sbjct: 67  FTCAVLLDAVGEPEL-LDDALEAYLDKFEDER---PAVRDLCNNQSGLRDYWALSVLCGA 122

Query: 352 LLICDW--DECLNRIALSAP-ETEPGQEQLYHYLSFGW-LCGGIIERASGKKFQEILEEG 407
                +   +  + +        EPG    Y Y +  + +   +IE  +G+   +IL E 
Sbjct: 123 DPEGVFLPAQAQSLLRRLKTTHFEPGSH--YSYCNGNFRILADLIEAHTGRTLVDILSER 180

Query: 408 IIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA 467
           I  P             G++   A L  DT   ++ +G                      
Sbjct: 181 IFAPA------------GMKR--AELISDTALFDECTGYEGDTVRGFL------------ 214

Query: 468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPP 511
              PA   +       +  A    S   +  +   +        
Sbjct: 215 ---PATNRI-----QWMGDAGICASLNDMIAWEQFIDATRDDES 250

>3tg9_A Penicillin-binding protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.20A {Bacillus halodurans} Length = 356

 Score =  104 bits (262), Expect = 1e-24
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 17/189 (8%)

Query: 234 LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGIT 293
           +++ L  +  D K+ G  +   K  ++    S G   R +  P +  + F + S  K  T
Sbjct: 3   MKNHLHTIMEDWKLSGTAL-MKKGEDIPFIASLGFANRAERIPNEHHTRFGIASGCKLFT 61

Query: 294 AGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLL 353
           A  +  LV+ GKL  +  +++       N    + +HH+L HTSG+ +   +  +++   
Sbjct: 62  AIAICQLVEAGKLSFDTPLSDWLDAPFPN----VTIHHLLTHTSGVPDYFDEEITDDFED 117

Query: 354 ICDW---------DECLNRIALSAPETEPGQEQLYHYLSFG-WLCGGIIERASGKKFQEI 403
           +             + L     +  +  PG    +HY + G  L G ++E  SG  FQE 
Sbjct: 118 LWKDVPMYHLRRLKDFLPLFQHAPMKFPPGHR--FHYNNAGFILLGLVVESVSGVTFQEY 175

Query: 404 LEEGIIQPL 412
           +E  + Q  
Sbjct: 176 VEANVFQRA 184

>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A Length = 432

 Score =  101 bits (254), Expect = 5e-23
 Identities = 50/255 (19%), Positives = 89/255 (34%), Gaps = 32/255 (12%)

Query: 232 AKLRDFLVELGNDGKILGIQVCAY-KDGEVIIDTSAGMLG-----RYDPRPVQPDSLFPV 285
             +     +     +I G  + A    G +      G             P+Q D+   +
Sbjct: 34  VLMETAFRKAVESRQIPGAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRL 93

Query: 286 FSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFK---------SNGKDL-------IKV 329
            S TK +T  M+   ++ G + L+E +  + P+             G          I +
Sbjct: 94  ASATKLLTTIMVLQCMERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNARLRERRGKITL 153

Query: 330 HHVLNHTSGL----HNVSVDLSSENPLLICDWDECLNRIALSAP-ETEPGQEQLYHYLSF 384
            H+L HTSGL     +  +        L       +     + P   +PG E +Y   + 
Sbjct: 154 RHLLTHTSGLSYVFLHPLLREYMAQGYLQSAEKFGIQSRL-APPAVNDPGAEWIYG-TNL 211

Query: 385 GWLCGGIIERASGKKFQEILEEGIIQPLSI-DGELYIGIPPGVESRLASLTIDTDDLNKV 443
            W  G ++ERA+G   ++ L+E I  PL I D    +   P + +R A  T       ++
Sbjct: 212 DWA-GKLVERATGLDLEQYLQENICAPLGITDMTFKLQQRPDMLARRADQTHRNSADGRL 270

Query: 444 SGINNRPDLRLPSSF 458
              ++    R     
Sbjct: 271 R-YDDSVYFRADGEE 284

>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A* Length = 392

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 25/209 (11%)

Query: 228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFS 287
             + A+L D L +           V   +  EV+ +        Y      PD    + +
Sbjct: 64  GAIAAQLPD-LEQRLEQTYTDAFLV--LRGTEVVAE-------YYRA-GFAPDDRHLLMA 112

Query: 288 VTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGL-------- 339
           V+K +   ++  LVD G++   + +    PE   +  D   V  VL+    +        
Sbjct: 113 VSKSLCGTVVGALVDEGRIDPAQPVTEYVPELAGSVYDGPSVLQVLDMQISIDYNEDYVD 172

Query: 340 ---HNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG-WLCGGIIERA 395
                 + D S+                  +        E  + Y S    +   I+ER 
Sbjct: 173 PASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGDGSTGE--FQYCSANTDVLAWIVERV 230

Query: 396 SGKKFQEILEEGIIQPLSIDGELYIGIPP 424
           +G ++ E L   +   L  D +  I +  
Sbjct: 231 TGLRYVEALSTYLWAKLDADRDATITVDT 259

>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis} Length = 422

 Score = 91.1 bits (226), Expect = 1e-19
 Identities = 30/218 (13%), Positives = 66/218 (30%), Gaps = 35/218 (16%)

Query: 229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSV 288
                L++ L +   D  ++        +G+++ +       RY            + S+
Sbjct: 96  GSATPLKELLDDNKTDAFVV------VHNGQLVYE-------RYFN-GYNESEPHGMASL 141

Query: 289 TKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGL---HNVSVD 345
            K  T  ++  L +  ++ LE+       E K+       +  +++    +    +    
Sbjct: 142 AKVFTGAIIQSLAEENRIDLEKTADTYIKELKNTPFGKATLQQLMDMQVSVEYPTHGYEH 201

Query: 346 LSSENP-------------LLICDWDECLNRIALSAP-ETEPGQEQLYHYLSFG-WLCGG 390
            + EN                  D    +  +   A     PG    + Y +        
Sbjct: 202 PALENQDAQLYLASNILPRDKNYDGPMKIYDMLQEAKETAPPGSV--FSYNNGSTETLAW 259

Query: 391 IIERASGKKFQEILEEGIIQPLSIDGELYIGI-PPGVE 427
           II   +GK   E + E I   + ++   Y       +E
Sbjct: 260 IIRTITGKSLAENVSERIWSQIGMEENAYYVTDETKIE 297

>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis} Length = 280

 Score = 81.7 bits (202), Expect = 3e-17
 Identities = 33/174 (18%), Positives = 52/174 (29%), Gaps = 46/174 (26%)

Query: 239 VELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLH 298
           +E+     +            V+                    +F + SVTK + A    
Sbjct: 4   LEVLGGWPVPAAAAAVIGPAGVL------------ATHGDTARVFALASVTKPLVARAAQ 51

Query: 299 WLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWD 358
             V+ G + L+             G     V H+L HTSGL                   
Sbjct: 52  VAVEEGVVNLDTPA----------GPPGSTVRHLLAHTSGL------------------- 82

Query: 359 ECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPL 412
                +        PG  ++Y    F  L    ++R SG +F   L E + +PL
Sbjct: 83  ----AMHSDQALARPGTRRMYSNYGFTVL-AESVQRESGIEFGRYLTEAVCEPL 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 3e-13
 Identities = 103/641 (16%), Positives = 180/641 (28%), Gaps = 203/641 (31%)

Query: 59  PILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDV----PEQAME 114
             + +F   K +    K  L+K      E DH+ ++S  A  G            E+ ++
Sbjct: 28  AFVDNFDC-KDVQDMPKSILSK-----EEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 115 VSTLFFRTSAPANEAF--ETVKNLSEQRAKNLKV-IQEKMKLNQKEVKRFNPVDAF-PGD 170
               F       N  F    +K    Q +   ++ I+++ +L       +N    F   +
Sbjct: 81  K---FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-------YNDNQVFAKYN 130

Query: 171 IVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDV 230
           +      L L + L      + V +D +         +G  K  +  A          DV
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGV---------LGSGK--TWVA---------LDV 170

Query: 231 EAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQ-PDSLFPVFSVT 289
                 + V+   D KI  + +      E +++    +L + DP      D    +    
Sbjct: 171 ---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 290 KGITAGMLHWLVD----NGKLKLEE-NIANIWPEFKSNGKDLI---------------KV 329
             I A +   L      N  L L     A  W  F  + K L+                 
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 330 HHVLNHTS-GLH------------NVSV-DLSSE----NPLLI-----------CDWD-- 358
           H  L+H S  L             +    DL  E    NP  +             WD  
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 359 -----ECLNR-IALSAPETEPG-QEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQP 411
                + L   I  S    EP    +++  LS                   +        
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-------------------VFPPS---- 384

Query: 412 LSIDGELYIGIPPGVESRL--ASLTIDTDD----LNKVSGINNRPD---LRLPSSFQPDK 462
                     IP  + S +    +  D       L+K S +  +P    + +PS +   K
Sbjct: 385 --------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 463 ISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLG 522
           +           N   + R+I+           + + +               L  P L 
Sbjct: 437 VKLE--------NEYALHRSIV-------DHYNIPKTF-----------DSDDLIPPYLD 470

Query: 523 S--HPHIPKFPSHETSKKQKGTKKELLAA-------LKNKTNNSEHGHKYT-------KD 566
              + HI     H     +   +  L          L+ K  +       +       + 
Sbjct: 471 QYFYSHI----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 567 LEG-GSHIRTASGDTYARLIN--------IETSSSNTSTTD 598
           L+    +I   +   Y RL+N        IE +   +  TD
Sbjct: 527 LKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 63/398 (15%), Positives = 126/398 (31%), Gaps = 99/398 (24%)

Query: 1   MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPI 60
           +  ++  + ++  AF ++ + ++   TR                   +FL +    H  +
Sbjct: 250 LLNVQ--NAKAWNAFNLSCKILL--TTR--------------FKQVTDFLSAATTTHISL 291

Query: 61  -LLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGLRLRLDVPEQAMEVSTLF 119
                 LT                        +LL  + +   +   D+P + +  +   
Sbjct: 292 DHHSMTLTPDEV-------------------KSLLLKYLDCRPQ---DLPREVLTTNPRR 329

Query: 120 FRT-SAPANEAFETVKNLSEQRAKNLKVIQEK--MKLNQKEVKR-FNPVDAFPGDIVIFS 175
               +    +   T  N        L  I E     L   E ++ F+ +  FP    I +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 176 RVLNLLRGLSSTMNVRIVYLDIMRPFAEYVLQVGINKEPSVSAEWIYSKPIHSDVEAKLR 235
            +L+L+       +V      ++    +Y L   + K+P  S   I S  I+ +++ KL 
Sbjct: 390 ILLSLIWFDVIKSDVM----VVVNKLHKYSL---VEKQPKESTISIPS--IYLELKVKLE 440

Query: 236 DFLVELGNDGKILG--IQVCAYKDGEVIIDTSAG----MLGR--YDPRPVQPDSLFP-VF 286
           +    L     I+        +   ++I           +G    +    +  +LF  VF
Sbjct: 441 N-EYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

Query: 287 -------------SVTKGITAGMLHWLVDNGKLKL-EENIANIWPEFKSNGKDLIKVHHV 332
                        S     +  +L+ L     LK  +  I +  P+++     ++    +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPYICDNDPKYERLVNAIL--DFL 552

Query: 333 LNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPE 370
                           EN  LIC     L RIAL A +
Sbjct: 553 PKI------------EEN--LICSKYTDLLRIALMAED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 3e-10
 Identities = 63/483 (13%), Positives = 135/483 (27%), Gaps = 143/483 (29%)

Query: 7   NDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLD--- 63
           ND +    + V++ +   ++ +A                     + +  P + +L+D   
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQA---------------------LLELRPAKNVLIDGVL 159

Query: 64  -FGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFA------EMGLRLRLDVPEQAME-V 115
             G         K  +A          +  +            +      + PE  +E +
Sbjct: 160 GSG---------KTWVA----LDVCLSY-KVQCKMDFKIFWLNLK---NCNSPETVLEML 202

Query: 116 STLFFRTSAPANEAFETVKNLS---EQRAKNLKVIQEKMKLNQ-----KEVKRFNPVDAF 167
             L ++         +   N+          L+ + +             V+     +AF
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 168 PGD----IVIFSRVLNLLRGLSSTMNVRIVYLDIMRPFAEY--------VLQVGINKEPS 215
             +    I++ +R   +   LS+     I                     L       P 
Sbjct: 263 --NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 216 VSAEWIYSKPIH-SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEV-----IIDTSAGML 269
              E + + P   S +   +RD L    N           +K         II++S  +L
Sbjct: 321 ---EVLTTNPRRLSIIAESIRDGLATWDN-----------WKHVNCDKLTTIIESSLNVL 366

Query: 270 GRYDPRPVQPD-SLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIK 328
              + R +    S+FP  S    I   +L  +  +        + N     K +   L++
Sbjct: 367 EPAEYRKMFDRLSVFPP-SAH--IPTILLSLIWFDVIKSDVMVVVN-----KLHKYSLVE 418

Query: 329 VHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIAL---SAPETEPGQEQL------- 378
                  T  + ++ ++L  +      + +  L+R  +   + P+T    + +       
Sbjct: 419 -KQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 379 ------YH----------------YLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDG 416
                 +H                +L F +L   I  R     +      G I       
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWN---ASGSILNTLQQL 527

Query: 417 ELY 419
           + Y
Sbjct: 528 KFY 530

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	729
4gdn_A	342	Protein FLP; peptidase, alpha/beta, hydrolase; HET	100.0
3zyt_A	372	Esterase A, ESTA; hydrolase, enzymatic promiscuity	100.0
2drw_A	363	DAA, D-amino acid amidase; penicillin recognizing	100.0
3rju_A	351	Beta-lactamase/D-alanine carboxypeptidase; structu	100.0
1yqs_A	349	D-alanyl-D-alanine carboxypeptidase; cell well bio	100.0
2qz6_A	358	Beta-lactamase; psychrophIle, cold adaptation, ant	100.0
1zkj_A	359	CMY-10, extended-spectrum beta-lactamase; plasmid,	100.0
1ci9_A	392	ESTB, protein (carboxylesterase); hydrolase, cabox	100.0
2wzx_A	371	Beta-lactamase; inhibitor, hydrolase, antibiotic r	100.0
2ffy_A	358	Beta-lactamase; AMPC, deacylation, transition stat	100.0
2qmi_A	447	PBP related beta-lactamase; PAB87, octamer, LU-HPD	100.0
3o3v_A	335	Beta-lactamase, CLBP protein; alpha/beta, disulfid	100.0
3tg9_A	356	Penicillin-binding protein; structural genomics, P	100.0
3hlc_A	432	Transesterase, LOVD; alpha/beta hydrolase fold, tr	100.0
1ei5_A	520	D-aminopeptidase, DAP; penicillin binding protein,	100.0
2dcf_A	392	6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.	100.0
4gb7_A	422	6-aminohexanoate-dimer hydrolase; structural genom	100.0
3i7j_A	280	Beta-lactamase MB2281C; alpha-beta protein., struc	100.0
2cc1_A	262	Beta-lactamase, penicillinase; hydrolase, antibiot	99.38
1bsg_A	266	Beta lactamase, penicillinase; hydrolase, antibiot	99.12
1hzo_A	271	Beta-lactamase; mixed alpha/beta, cephalosporinase	99.11
2j9o_A	298	TLL2115 protein; penicillin-binding protein, hydro	99.1
2qpn_A	287	Beta-lactamase GES-1; APO-enzyme, plasmid, hydrola	99.0
2p74_A	263	Beta-lactamase CTX-M-9A; ultra-high resolution, ac	98.99
1e25_A	282	Extended-spectrum beta-lactamase PER-1; hydrolase,	98.97
1g6a_A	271	Beta-lactamase PSE-4; class A beta-lactamase, carb	98.97
1o7e_A	276	L2 beta lactamase; hydrolase, class A; 1.51A {Sten	98.96
1bue_A	265	Protein (imipenem-hydrolysing beta-lactamase); hyd	98.93
1m40_A	263	TEM-1, beta-lactamase TEM; acylation mechanism, ul	98.92
3c5a_A	264	Class A carbapenemase KPC-2; beta-lactamase, C-ter	98.89
1n9b_A	265	Penicillinase, beta-lactamase SHV-2; beta-lactam h	98.81
2wk0_A	265	Beta-lactamase; hydrolase, iodopenicillanate, anti	98.78
1tvf_A	369	PBP4, penicillin binding protein 4; structural gen	98.67
1w7f_A	307	Beta-lactamase; hydrolase, isocitrate, bacillus li	98.67
3a3j_A	344	PBP5; penicillin binding protein 5, DACA, hydrolas	98.63
3p09_A	290	Beta-lactamase; structural genomics, center for st	98.6
4ewf_A	275	Beta-lactamase; ABA-sandwich, structural genomics,	98.56
3dw0_A	294	Class A carbapenemase KPC-2; beta-lactamase, antib	98.56
2wuq_A	318	BLAB, beta-lactamase regulatory protein BLAB; clas	98.51
4hes_A	275	Beta-lactamase class A-like protein; structural ge	98.48
4euz_A	283	Carbapenem-hydrolizing beta-lactamase SFC-1; carba	98.47
1ghp_A	258	Beta-lactamase, penicillinase; hydrolase, antibiot	98.46
1es5_A	262	DD-transpeptidase; penicillin-binding, serine pept	98.28
1xp4_A	379	D-alanyl-D-alanine carboxypeptidase; five-stranded	98.14
1alq_A	266	CP254 beta-lactamase; hydrolase, circular permuted	98.05
3mzf_A	363	D-alanyl-D-alanine carboxypeptidase DACA; beta-lac	98.02
3ita_A	352	D-alanyl-D-alanine carboxypeptidase DACC; ppenicil	98.01
3ny4_A	265	Beta-lactamase, penicillinase; penicillin binding	98.0
3qhy_A	271	Beta-lactamase; enyzme-inhibitor complex, beta-pro	97.98
3cjm_A	282	Putative beta-lactamase; NP_815223.1, structural g	97.95
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	97.91
3lez_A	260	Beta-lactamase; antibiotic resistance, halotoleran	97.79
3hun_A	453	Penicillin-binding protein 4; ampicillin, beta-lac	97.74
4dxb_A	637	RG13, maltose-binding periplasmic protein, beta-la	97.67
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	97.65
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.29
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	97.2
3mfd_A	334	D-alanyl-D-alanine carboxypeptidase DACB; penicill	97.13
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	97.01
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	96.92
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	96.58
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	96.56
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	96.55
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	96.54
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	96.51
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	96.45
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	96.44
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	96.4
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	96.4
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	96.37
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	96.37
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	96.35
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	96.34
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	96.31
2bcf_A	276	Probable D-alanyl-D-alanine carboxypeptidase DACB2	96.3
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	96.3
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	96.29
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	96.27
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	96.25
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	96.25
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	96.25
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	96.22
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	96.22
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	96.18
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	96.17
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	96.16
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	96.16
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	96.15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	96.15
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	96.15
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	96.14
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	96.11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	96.11
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	96.1
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	96.08
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	96.06
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	96.06
3pls_A	298	Macrophage-stimulating protein receptor; protein k	96.04
3ork_A	311	Serine/threonine protein kinase; structural genomi	95.99
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	95.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	95.96
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	95.94
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	95.92
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	95.9
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	95.88
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	95.87
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	95.85
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	95.82
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	95.81
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	95.81
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	95.8
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	95.77
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	95.77
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	95.75
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	95.74
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	95.72
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	95.71
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	95.7
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	95.66
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	95.66
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	95.64
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	95.62
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	95.62
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	95.61
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	95.6
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	95.6
3an0_A	340	Dual specificity mitogen-activated protein kinase;	95.59
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	95.59
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	95.57
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	95.57
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	95.56
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	95.55
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	95.54
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	95.54
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	95.53
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	95.53
3o0g_A	292	Cell division protein kinase 5; kinase activator c	95.53
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	95.52
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	95.51
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	95.51
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	95.51
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	95.5
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	95.49
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	95.49
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	95.48
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	95.48
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	95.48
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	95.47
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	95.47
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	95.47
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	95.46
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	95.45
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	95.45
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	95.45
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	95.44
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	95.44
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	95.43
3niz_A	311	Rhodanese family protein; structural genomics, str	95.43
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	95.43
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	95.42
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	95.41
2a19_B	284	Interferon-induced, double-stranded RNA-activated	95.4
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	95.4
3rp9_A	458	Mitogen-activated protein kinase; structural genom	95.39
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	95.39
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	95.39
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	95.38
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	95.37
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	95.36
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	95.34
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	95.33
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	95.32
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	95.32
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	95.31
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	95.31
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	95.3
2xep_A	458	ORF12; hydrolase; 1.50A {Streptomyces clavuligerus	95.3
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	95.29
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	95.29
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	95.28
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	95.28
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	95.27
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	95.26
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	95.25
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	95.24
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	95.24
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	95.24
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	95.23
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	95.23
3fme_A	290	Dual specificity mitogen-activated protein kinase;	95.23
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	95.2
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	95.19
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	95.17
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	95.17
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	95.15
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	95.15
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	95.14
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	95.13
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	95.13
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	95.11
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	95.11
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	95.11
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	95.1
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	95.09
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	95.07
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	95.07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	95.07
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	95.06
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	95.05
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	95.04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	95.04
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	95.04
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	95.04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	95.03
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	95.02
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	95.01
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	95.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	94.98
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	94.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	94.96
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	94.95
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	94.92
2dyl_A	318	Dual specificity mitogen-activated protein kinase	94.92
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	94.89
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	94.89
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	94.89
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	94.88
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	94.85
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	94.84
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	94.84
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	94.84
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	94.82
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	94.81
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	94.8
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	94.79
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	94.78
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	94.77
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	94.76
3bhy_A	283	Death-associated protein kinase 3; death associate	94.75
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	94.75
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	94.74
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	94.73
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	94.69
3q4u_A	301	Activin receptor type-1; structural genomics conso	94.68
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	94.68
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	94.68
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	94.67
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	94.67
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	94.66
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	94.64
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	94.58
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	94.57
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	94.56
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	94.56
3uqc_A	286	Probable conserved transmembrane protein; structur	94.56
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	94.56
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	94.55
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	94.55
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	94.54
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	94.53
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	94.52
3aln_A	327	Dual specificity mitogen-activated protein kinase;	94.52
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	94.51
3soc_A	322	Activin receptor type-2A; structural genomics cons	94.49
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	94.48
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	94.46
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	94.45
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	94.44
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	94.42
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	94.42
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	94.41
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	94.37
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	94.37
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	94.36
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	94.34
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	94.34
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	94.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.28
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	94.27
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	94.26
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	94.26
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	94.21
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	94.19
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	94.18
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	94.17
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	94.17
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	94.11
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	94.11
4aoj_A	329	High affinity nerve growth factor receptor; transf	94.07
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	94.05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	94.02
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	93.94
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	93.93
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	93.9
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	93.89
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	93.79
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	93.78
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	93.77
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	93.75
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	93.69
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	93.62
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	93.58
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	93.57
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	93.52
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	93.51
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	93.45
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	93.44
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	93.29
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	93.21
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	93.2
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	93.02
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	92.98
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	92.94
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	92.84
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	92.78
3ats_A	357	Putative uncharacterized protein; hypothetical pro	92.75
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	92.73
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	92.58
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	92.54
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	92.49
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	92.36
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	92.0
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	91.87
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	91.74
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	91.74
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	91.66
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	91.64
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	91.59
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	91.57
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	91.56
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	91.09
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	90.93
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	87.38
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	84.74
2x02_A	248	Beta-lactamase OXA-10; class D, hydrolase, antibio	84.7
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	83.96
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	81.83
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	81.32

>4gdn_A Protein FLP; peptidase, alpha/beta, hydrolase; HET: PE4; 3.20A {Staphylococcus aureus}

Probab=100.00  E-value=1.1e-53  Score=462.32  Aligned_cols=245  Identities=17%  Similarity=0.221  Sum_probs=199.4

Q ss_pred             HHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCcc
Q 004807          230 VEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLE  309 (729)
Q Consensus       230 ~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ld  309 (729)
                      ..++|++++++.++++.+||++|+|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+||
T Consensus        11 ~~~~id~~i~~~~~~~~~pG~sv~V~~~g~~v~~~~~G~ad~~~~~~~~~~T~f~iaSvtK~~Ta~~i~~Lve~G~l~Ld   90 (342)
T 4gdn_A           11 SQQQIDKIIEHDLQKGHIPGASILIVKNGKVFLNKGYGYQDVDKKVKASPTTKYEIASNTKAFTGLAILKLAQEGRLNLN   90 (342)
T ss_dssp             SSCSHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCEEECGGGGHHHHHHHHHHHHHHTSSCTT
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEEEECCEEEEEEEEEEeccCCCCCCCCCCEEeeeeHHHHHHHHHHHHHHHcCCcchh
Confidence            34577888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhccCCccC---CCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHH
Q 004807          310 ENIANIWPEFKSN---GKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGW  386 (729)
Q Consensus       310 d~v~~ylP~~~~~---~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~  386 (729)
                      |||.+|||+|+..   .++.|||||||+|||||+.+...... ........+++++.+...++.++||++|.|||.+|. 
T Consensus        91 d~v~~ylP~~~~~~~~~~~~ITir~LL~HtSGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~-  168 (342)
T 4gdn_A           91 DDVSKHVPHFKMNYNGQNETITIKQLLAQTSGIPSDITSEDA-VTNKNNRLNDVTRAIMGDELHHKPGEEFEYSNMNYD-  168 (342)
T ss_dssp             SBGGGTSTTCCCEETTEECCCBHHHHHHTCSCCCCSCTTCSS-CCSSCCCSSCCHHHHHTSCCSSSTTSSCCCCHHHHH-
T ss_pred             heeeecCCccccccccCCCceEEeecccccCCCCCccccccc-cccccccHHHHHHHHhhCCCcCCCCceeeecCcccc-
Confidence            9999999999742   35789999999999999876432211 111234456778888899999999999999999998 


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhh
Q 004807          387 LCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQL  466 (729)
Q Consensus       387 lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  466 (729)
                      |||.|||++||++|++|++++||+||||++|.|.. ++....+.+..|.........                       
T Consensus       169 lLg~iie~vtg~~~~~~~~~~i~~PLgm~~t~~~~-~~~~~~~~a~gy~~~~~~~~~-----------------------  224 (342)
T 4gdn_A          169 LLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSFKQ-TNNKSKHDAIGYELQGSTPVV-----------------------  224 (342)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHTTTTTTCTTCEECC-SCCCCSSBCCCEEEETTEEEE-----------------------
T ss_pred             hHHHHHHHHHCcCHHHHHHHHHhcccCCCCcccCC-CcccccccceeeeecCCcccc-----------------------
Confidence            99999999999999999999999999999997743 333444555544322211100                       


Q ss_pred             hccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCC
Q 004807          467 AAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGV  508 (729)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~  508 (729)
                              ..+.+.....|+||++||++||+||++++++++.
T Consensus       225 --------~~~~~~~~~~~aggl~st~~Dl~~~~~~~l~~~~  258 (342)
T 4gdn_A          225 --------SKPEFNLWDTPSAYMMTSTEDLEHWIKFQLNPPD  258 (342)
T ss_dssp             --------CCCCCCGGGHHHHCEEEEHHHHHHHHHHHHSCCH
T ss_pred             --------ccccccccchhccccccCHHHHHHHHHHHcCCCc
Confidence                    0111112235889999999999999999998763

>3zyt_A Esterase A, ESTA; hydrolase, enzymatic promiscuity, beta-lactamase; 2.45A {Arthrobacter nitroguajacolicus}

Probab=100.00  E-value=3.2e-52  Score=455.42  Aligned_cols=349  Identities=27%  Similarity=0.371  Sum_probs=255.2

Q ss_pred             HHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCch
Q 004807          233 KLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENI  312 (729)
Q Consensus       233 ~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v  312 (729)
                      .+++.+++.++++.++|++++|+++|+.+.+.+.|       .|+++||+|+|+|+||+|||+++++|+|+|+|+|||||
T Consensus        12 ~v~~~~~~~~~~~~~~GaavaV~~~G~~v~d~~~g-------~p~~~dt~f~i~S~tK~~ta~~~~~lv~~G~l~ld~~v   84 (372)
T 3zyt_A           12 PVAELFGVFLEQDPDYSAQVAAYHRGVKVLDLSGG-------PHIRPDSVTGVFSCSKGMAGLVMALLVQDGELDLEAEV   84 (372)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEEEETTEEEEEEEES-------TTCCTTCBEECTTHHHHHHHHHHHHHHHTTSCCTTSBG
T ss_pred             HHHHHHHHHHHcCCCceEEEEEEECCEEEEECCCC-------CCCCCCCEEEeeehHHHHHHHHHHHHHHCCCCCCCCch
Confidence            45555666666688999999999999988776654       78999999999999999999999999999999999999


Q ss_pred             hhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHH
Q 004807          313 ANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGII  392 (729)
Q Consensus       313 ~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~ii  392 (729)
                      .+|||+|...++++|||||||+||||++.+.....   .....+.+++++.+...++.++||++|.|||.+|.+|+|.||
T Consensus        85 ~~~lP~~~~~~~~~iTi~~LL~htsGl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~~l~g~ii  161 (372)
T 3zyt_A           85 VKYWPEFGVEGKSSITVAQLLSHRAGLLGVEGGLT---LHEVNNSELAAAKLAELPPLWKPGTAFGYHALTIGIFMEELC  161 (372)
T ss_dssp             GGTCGGGGTTTTSSCBHHHHTTTCSCCCCCTTCCC---HHHHHTTHHHHHHHHTSCCSSCSSSCBCCCTTHHHHHHHHHH
T ss_pred             HHhCcccccCCCCCccHHHHhhcCCCCCCcccccc---ccccCCHHHHHHHHHhCCCcCCCCCceeecCCcHHHHHHHHH
Confidence            99999999888899999999999999987644321   112346678899999999999999999999999963569999


Q ss_pred             HHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhccccc
Q 004807          393 ERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPA  472 (729)
Q Consensus       393 e~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  472 (729)
                      |+++|++|++|++++||+||||++|++  .|+....|++..+..........         .+.................
T Consensus       162 e~~tg~~~~~~~~~~i~~PLgm~~t~~--~p~~~~~r~a~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  230 (372)
T 3zyt_A          162 RRITGSTLQEVFEQRIRAVTGANFYLG--LPESEESRFAQFRWAADPSWPWV---------DPASHFGLAANAAVGDILD  230 (372)
T ss_dssp             HHHHSSCHHHHHHHHTHHHHTCSEESS--CCGGGGGGBCCCBCCCCTTCCCC---------CTTSHHHHHTTTTTCCGGG
T ss_pred             HHHHCCCHHHHHHHhhhcccCCccccc--CChhhhhcceeeecccCCCcccc---------ccccccccccccccccccc
Confidence            999999999999999999999987755  56666777776654332211100         0000000000001111122


Q ss_pred             cccchhcccccCCCcceecCHHHHHHHHHHHHcC--CCCCCCCCCCCCCCCCCCCCCCCCCCccccccccchhHHHHHHh
Q 004807          473 VFNMLNIRRAIIPAANGHCSARALARYYAALADG--GVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKKELLAAL  550 (729)
Q Consensus       473 ~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~g--g~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  550 (729)
                      ..+...+.....|+||++||++||+||+++++++  |.+.+++                +           .+.++++.+
T Consensus       231 ~~~~~~~~~~~~~aggl~sTa~Dlar~~~~ll~g~~G~~~~~~----------------~-----------l~~~~~~~~  283 (372)
T 3zyt_A          231 LPNIREVRAAGLSSAAGVASAEGMARIYAAALTGLEGKSAMPP----------------L-----------LTEETIRTV  283 (372)
T ss_dssp             GGGSHHHHHHCCTTTCCEECHHHHHHHHHHHHTCBCGGGCBCC----------------S-----------SCHHHHHHH
T ss_pred             cccchhhhcccccccccccCHHHHHHHHHHHHhCCCCCcCCcc----------------c-----------CcHHHHHHH
Confidence            3445556666779999999999999999999997  3343331                0           133444444


Q ss_pred             hccCCCCcCCcccccccCCCccccccCCcchhhhhcccccCCCCCCCcCCCCCCCCCCcccccccCCCcccccccccCCC
Q 004807          551 KNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDY  630 (729)
Q Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  630 (729)
                      ...                                                     |...          .|..      
T Consensus       284 ~~~-----------------------------------------------------~~~~----------~d~~------  294 (372)
T 3zyt_A          284 SAE-----------------------------------------------------QVFG----------IDRV------  294 (372)
T ss_dssp             HSC-----------------------------------------------------CEEE----------EBTT------
T ss_pred             hcc-----------------------------------------------------CCCC----------CCcc------
Confidence            000                                                     0000          0000      


Q ss_pred             CCCCCCCCccccceecccC--CCCCcceeccCCCCCceeeeecCCCeEEEEEeccCCCCcc---hHHHHHHHHHhh
Q 004807          631 GDLALPNGRFGLGFKRYNT--RDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGAT---TGRIIHFVCSEL  701 (729)
Q Consensus       631 ~~~~~~~~~~GlG~~~~~~--~~~~~~~~gh~G~~G~~~~~~Pe~~~~vvvl~N~~~~~~~---~~~~~~~v~~~l  701 (729)
                         ...+..||+||++...  +.++...|||+|++|+++|+||+++++|++++|+..++..   ..++.++|.+++
T Consensus       295 ---~~~~~~~GlG~~~~~~~~~~~~~~~~GH~G~~Gt~~~idP~~~l~v~~ltN~~~p~~~~~r~~~L~~av~~~l  367 (372)
T 3zyt_A          295 ---FGETGCFGTVFMKSHTRMPFGSYRAFGHDGASASLGFADPVYELGFGYVPQTAEPGGVGCRNFQLSSAVREVI  367 (372)
T ss_dssp             ---TSSEEEESSSSEECBTTBCSSCTTCEEEECTTSCEEEEEGGGTEEEEEEESBCCCCSTTSHHHHHHHHHHHHH
T ss_pred             ---cCCCCceeeeeccCCCCCCCCCCCeEEECChhhEEEEEEeCCCEEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence               0113579999987542  2345678999999999999999999999999999866543   456777777776

>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein, D-stereospecific, hydrophobic, hydrolase; 2.10A {Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A 2efu_A* 2efx_A*

Probab=100.00  E-value=2.6e-51  Score=446.91  Aligned_cols=264  Identities=19%  Similarity=0.242  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCc
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL  308 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~l  308 (729)
                      ++.+++++.+++++++ ++||++++|+++|+++++.++|+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+|
T Consensus         3 ~l~~~l~~~l~~~~~~-~~pG~~v~V~~~g~~v~~~~~G~ad~~~~~p~~~dt~f~iaS~TK~~Ta~~i~~Lve~G~L~L   81 (363)
T 2drw_A            3 DLNNAIQGILDDHVAR-GVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDL   81 (363)
T ss_dssp             HHHHHHHHHHHHHHTT-TCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred             hHHHHHHHHHHHHHHc-CCCeEEEEEEECCcEEEEEeEEeccccCCCCCCCCCeeechhhhHHHHHHHHHHHHHCCCCCC
Confidence            5677888999998886 799999999989999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHH
Q 004807          309 EENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLC  388 (729)
Q Consensus       309 dd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lL  388 (729)
                      ||||.+|||+|  ..++.|||||||+|||||+++ .......+....+.+++++.+...++.++||++|.|||.+|. ||
T Consensus        82 dd~v~~ylP~~--~~~~~ITir~LLtHtSGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~-lL  157 (363)
T 2drw_A           82 DEPITRWFPDL--PKAAQMPVRILLNHRSGLPDF-ETSMPMISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYV-LA  157 (363)
T ss_dssp             TSBGGGTCTTS--TTGGGCBGGGGTTTCSCCCCC-TTTSBSSCCCCCCHHHHHHHHHHHSCCCCTTSSCCCCSHHHH-HH
T ss_pred             CCcHHHhCcCC--CCCCCCcHHHHhhcccCCCCC-ccccccccccCCCHHHHHHHHHhCCCCCCCCCceEEchhhHH-HH
Confidence            99999999999  346899999999999999986 222111233457889999999999999999999999999998 99


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhc
Q 004807          389 GGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAA  468 (729)
Q Consensus       389 g~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  468 (729)
                      |.|||+++|++|++|++++||+||||++|.|...   ...+.+..|.....  ...     +.  .+..|.... .+  .
T Consensus       158 g~iie~vtG~~~~~~~~~~I~~PLGm~~t~~~~~---~~~~~~~~y~~~~~--~~~-----~~--~~~~~~~~~-~g--~  222 (363)
T 2drw_A          158 GMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTH---ETFPIEREARGYMH--AAA-----DD--ENPQWDVSG-AG--D  222 (363)
T ss_dssp             HHHHHHHHTSCHHHHHHHHTHHHHTCCSCEETTT---CCCCGGGBCCCEEE--CBT-----TC--CSCSSBCTT-CC--C
T ss_pred             HHHHHHHHCCCHHHHHHHhhhhhcCCCcccCCcc---cCcchhcccccccc--ccc-----cc--cccccccCC-CC--c
Confidence            9999999999999999999999999999976421   11222222211000  000     00  000000000 00  0


Q ss_pred             cccc-cccchhc-ccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          469 ITPA-VFNMLNI-RRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       469 ~~~~-~~~~~~~-~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                      .++. ......+ .....|+||++||++||+||+++++++.+++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~aggl~sT~~Dl~~~~~~ll~g~lls~~  268 (363)
T 2drw_A          223 PVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQK  268 (363)
T ss_dssp             CBTTEEECTTTSCHHHHGGGTCEEECHHHHHHHHHHHHTTSSSCHH
T ss_pred             ccccccccccccCCCCCCCccceEeCHHHHHHHHHHHhcCCCCCHH
Confidence            0000 0000000 112358999999999999999999987655443

>3rju_A Beta-lactamase/D-alanine carboxypeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE CIT; 1.50A {Yersinia pestis} PDB: 3ozh_A*

Probab=100.00  E-value=1.6e-50  Score=438.81  Aligned_cols=244  Identities=19%  Similarity=0.247  Sum_probs=203.4

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK  307 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~  307 (729)
                      ..+.+.+++.+++++++.++||++++|+++|++++ .+||+++.+.+.|++++|+|+|+|+||+|||+++++|+|+|+|+
T Consensus         4 ~~~~~~ld~~i~~~~~~~~~~G~~~~v~~~g~~~~-~~~G~~~~~~~~~~~~~t~f~i~S~tK~~ta~~i~~lv~~G~l~   82 (351)
T 3rju_A            4 LLTSQIVDQYAEHIFYNSGAVGMALVVIDNNQVVN-RSFGETQPGNNIRPRPDSLIRIASITKLMTSEIMVKLADDGIVK   82 (351)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEE-EEEECSSTTCCCCCCTTCBEECGGGHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEEEEECCEEEE-EEEEeccCCCCCCCCCCCEEEehhhHHHHHHHHHHHHHHcCCCC
Confidence            45778999999999999999999999999999998 69999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhccCCccC----CCCCCcHHHHhcCCCCCCCCccCcccCCCcC-CCCHHHHHHHHHhcCCCCCCCCceecccC
Q 004807          308 LEENIANIWPEFKSN----GKDLIKVHHVLNHTSGLHNVSVDLSSENPLL-ICDWDECLNRIALSAPETEPGQEQLYHYL  382 (729)
Q Consensus       308 ldd~v~~ylP~~~~~----~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~  382 (729)
                      |||||.+|||++...    +++.|||||||+|||||+.+........+.. ..+.+++++.+...++.++||++|.|||.
T Consensus        83 ld~~v~~ylP~~~~~~~~~~~~~iTir~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~  162 (351)
T 3rju_A           83 LTDPLKKYAPKGVNVPSYSAKQPIRLLHLASHTSGLPREQPGGPQKRPVFTWPTKDNRWQWLKLAKVTVPPGVKAAYSNL  162 (351)
T ss_dssp             TTCBGGGGCCTTCCCCCSSTTCCCBHHHHHHTCSCCCSSCSSCCSSCCTTCSSCHHHHHHHHTTCCCCSCTTSEEECCSH
T ss_pred             CCCcHHHhCcccccCCCCCCCCCCcHHHHHhCcCCCCCCCCCccccCcccccCCHHHHHHHHHhCCCCCCCCCceeecHH
Confidence            999999999997542    3489999999999999998654332222211 23788999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcch
Q 004807          383 SFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDK  462 (729)
Q Consensus       383 ~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  462 (729)
                      +|. |||.|||+++|++|++|++++||+||||++|.|.. ++....+++..+.            ..+.     .     
T Consensus       163 ~~~-llg~iie~vtg~~~~~~~~~~i~~PLgm~~t~~~~-~~~~~~~~~~g~~------------~~~~-----~-----  218 (351)
T 3rju_A          163 AYD-LLADALSRAAGKPYAHLLRDKITAPLGMKNTTLTP-TAEQCKRLMIGVG------------SSRC-----G-----  218 (351)
T ss_dssp             HHH-HHHHHHHHHHTSCHHHHHHHHTHHHHTCTTCBSSC-CHHHHTTBCCCTT------------CCCC-----C-----
T ss_pred             HHH-HHHHHHHHHHCCCHHHHHHHhcccccCCCCCccCC-ChhhhhhcccCcC------------CCCC-----c-----
Confidence            999 99999999999999999999999999999997742 2222233332220            0000     0     


Q ss_pred             hhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          463 ISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                      ......|+||++||++||+||+++++++|.+.++
T Consensus       219 ----------------~~~~~~g~ggl~st~~Dl~~~~~~~l~~g~~~~~  252 (351)
T 3rju_A          219 ----------------NTVAAAGSGGIYSTPEDMQHWMQQFLASDNSAPK  252 (351)
T ss_dssp             ----------------CCGGGTTTTCCEECHHHHHHHHHTTSCCSSCCCC
T ss_pred             ----------------cccccCCcceeEECHHHHHHHHHHHhCCCCCcch
Confidence                            0112368999999999999999999999998776

>1yqs_A D-alanyl-D-alanine carboxypeptidase; cell well biosynthesis, beta-lactam, beta-sultam, sulfonylation, hydrolase; HET: BSA; 1.05A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1cef_A* 1ceg_A* 1ikg_A* 1iki_A* 1hvb_A* 1pw1_A* 1pw8_A* 1mpl_A* 1pwd_A* 1pwc_A* 1scw_A* 1pwg_A* 3pte_A 1sde_A*

Probab=100.00  E-value=4.3e-50  Score=434.98  Aligned_cols=323  Identities=21%  Similarity=0.302  Sum_probs=239.8

Q ss_pred             HHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCch
Q 004807          233 KLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENI  312 (729)
Q Consensus       233 ~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v  312 (729)
                      ++++.+++++++ ++||++++| ++|++++++++|+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+|||||
T Consensus        10 ~l~~~l~~~~~~-~~pG~~v~v-~~g~~v~~~~~G~a~~~~~~p~~~dt~f~iaSvTK~~Ta~~i~~Lve~G~l~ldd~v   87 (349)
T 1yqs_A           10 GLQAVLHTALSQ-GAPGAMVRV-DDNGTIHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDASV   87 (349)
T ss_dssp             HHHHHHHHHHHT-TCSEEEEEE-EETTEEEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTSBH
T ss_pred             HHHHHHHHHHhC-CCCeEEEEE-EcCCEEEEEeEEEeecccCCCCCCCCeEecccchHHHHHHHHHHHHHCCCCCCCCcH
Confidence            455666666665 599999887 788999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCccCCCCCCcHHHHhcCCCCCCCCccCccc-------CCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHH
Q 004807          313 ANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS-------ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG  385 (729)
Q Consensus       313 ~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~  385 (729)
                      .+|||+|..  ++.|||||||+|||||+++......       ..+....+.+++++.+...++.++||++|.|||.+|.
T Consensus        88 ~~ylP~~~~--~~~ITir~LL~HtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~  165 (349)
T 1yqs_A           88 NTYLPGLLP--DDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFV  165 (349)
T ss_dssp             HHHSTTCSS--CTTCBHHHHHTTCSCCCCTHHHHTSSHHHHHHHHTTCCCCHHHHHHHHHTSCCSSSTTSCCCCCHHHHH
T ss_pred             HHhccCcCC--CCCccHHHHhhCcCCCCcccchhhhhccchhhcCccccCCHHHHHHHHhcCCCccCCCCCeEEccHhHH
Confidence            999999986  5899999999999999976211110       0122356889999999999999999999999999998


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccC-cccccccccCCCCCCCCCCCCCcchhh
Q 004807          386 WLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDT-DDLNKVSGINNRPDLRLPSSFQPDKIS  464 (729)
Q Consensus       386 ~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~  464 (729)
                       |||.|||+++|++|++|++++||+||||++|.|.........+.+..|... ..+....      +             
T Consensus       166 -lLg~iie~vtG~~~~~~~~~~i~~PLGm~~t~~~~~~~~~~~~~~~gy~~~~~~g~~~~------~-------------  225 (349)
T 1yqs_A          166 -VAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGALV------D-------------  225 (349)
T ss_dssp             -HHHHHHHHHHSSCHHHHHHHHTTTTTTCTTCBCCTTCCCCCSSBCCCEECCSSTTCCCE------E-------------
T ss_pred             -HHHHHHHHHhCCCHHHHHHHhcccccCCCCcccCCcccccccccccceeccCCCCCccc------c-------------
Confidence             999999999999999999999999999999977432222222233333200 0000000      0             


Q ss_pred             hhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccchhH
Q 004807          465 QLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKK  544 (729)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~  544 (729)
                             .....+.   ...++||++||++||+||+++++++.+++++                                
T Consensus       226 -------~~~~~~~---~~~~aggl~sT~~Dl~~~~~~ll~g~lls~~--------------------------------  263 (349)
T 1yqs_A          226 -------STEQTVS---WAQSAGAVISSTQDLDTFFSALMSGQLMSAA--------------------------------  263 (349)
T ss_dssp             -------CCCCCCT---TTGGGTCCEECHHHHHHHHHHHHTTCSSCHH--------------------------------
T ss_pred             -------ccccCcc---cccCCcCcEeCHHHHHHHHHHHhcCCCCCHH--------------------------------
Confidence                   0000011   1247899999999999999999987665443                                


Q ss_pred             HHHHHhhccCCCCcCCcccccccCCCccccccCCcchhhhhcccccCCCCCCCcCCCCCCCCCCcccccccCCCcccccc
Q 004807          545 ELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDAF  624 (729)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  624 (729)
                       ++++|...                                                     ++.       +       
T Consensus       264 -~~~~m~~~-----------------------------------------------------~~~-------~-------  275 (349)
T 1yqs_A          264 -QLAQMQQW-----------------------------------------------------TTV-------N-------  275 (349)
T ss_dssp             -HHHHHTCC-----------------------------------------------------EEE-------E-------
T ss_pred             -HHHHHhhc-----------------------------------------------------cCC-------C-------
Confidence             44444000                                                     000       0       


Q ss_pred             cccCCCCCCCCCCCccccceecccCCCCCcceeccCC-CC--CceeeeecCCCeEEEEEeccCCCCcchHHHHHHHHHhh
Q 004807          625 LGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSG-MG--GSTGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSEL  701 (729)
Q Consensus       625 ~~~~~~~~~~~~~~~~GlG~~~~~~~~~~~~~~gh~G-~~--G~~~~~~Pe~~~~vvvl~N~~~~~~~~~~~~~~v~~~l  701 (729)
                                 +...||+||++..... +..+++|+| ..  +++++++|+.+++||+++|..........+.+++.+.+
T Consensus       276 -----------~~~~yGlG~~~~~~~~-g~~~~~H~G~~~G~~s~~~~~p~~~~~vvvl~N~~~~~~~~~~~~~~~~~~~  343 (349)
T 1yqs_A          276 -----------STQGYGLGLRRRDLSC-GISVYGHTGTVQGYYTYAFASKDGKRSVTALANTSNNVNVLNTMARTLESAF  343 (349)
T ss_dssp             -----------TTEEECSSCEEEECTT-SCEEEEEEEEETTEEEEEEECTTSSEEEEEEESEESCHHHHHHHHHHHHHHH
T ss_pred             -----------CCCCceeeEEeeccCC-CceEEEECCccCCeeEEEEEecCCCEEEEEEEcCCCCcccchHHHHHHHHHh
Confidence                       0127999999865322 345799999 33  56669999999999999998766543344555555555

>2qz6_A Beta-lactamase; psychrophIle, cold adaptation, antibiotic resistance, hydrolase, periplasm; 2.26A {Pseudomonas fluorescens}

Probab=100.00  E-value=1.7e-50  Score=439.34  Aligned_cols=240  Identities=21%  Similarity=0.292  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCc
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL  308 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~l  308 (729)
                      ++.+++++.+++++++..+||++++|+++|+++++ +||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+|
T Consensus         3 ~~~~~l~~~~~~~~~~~~~pG~~v~v~~~g~~~~~-~~G~~~~~~~~~~~~~t~f~iaS~tK~~ta~~i~~Lve~G~l~L   81 (358)
T 2qz6_A            3 DIRQVVDSTVEPLMQQQDIAGLSVAVIQNGKAQYF-NYGVANKDSKQPITENTLFEIGSVSKTFTATLAGYALANGKLKL   81 (358)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEE-EEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred             hHHHHHHHHHHHHHHhCCCCeEEEEEEECCEEEEE-EEEeeccCCCCCCCCCCEEechhhHHHHHHHHHHHHHHcCCCCC
Confidence            46788999999999989999999999999999885 89999999999999999999999999999999999999999999


Q ss_pred             cCchhhhccCCccCCCCCCcHHHHhcCCCC-CCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHH
Q 004807          309 EENIANIWPEFKSNGKDLIKVHHVLNHTSG-LHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWL  387 (729)
Q Consensus       309 dd~v~~ylP~~~~~~~~~iTir~LLtHtSG-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~l  387 (729)
                      ||||.+|||+|+...++.|||||||+|||| ++...+.       ...+.+++++.+...++.++||++|.|||.+|. |
T Consensus        82 ddpv~~ylP~~~~~~~~~iTir~LL~HtSG~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~-l  153 (358)
T 2qz6_A           82 SDPASQYLPALRGDKFDHISLLNLGTYTAGGLPLQFPE-------ESDNTGKMISYYQHWKPAFAPGTQRLYSNPSIG-L  153 (358)
T ss_dssp             TSBGGGGCGGGTTSGGGSSBHHHHHTTCSSCCCSSCC------------CHHHHHHHHHCCCSSCTTTEECCCHHHHH-H
T ss_pred             CCcHHHhCccccCCCCCCccHHHHhhCcCCCCCccCcc-------ccCCHHHHHHHHHhCCCCCCCCCceeeCHHHHH-H
Confidence            999999999998766789999999999999 9875432       134668899999999999999999999999999 9


Q ss_pred             HHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhh
Q 004807          388 CGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA  467 (729)
Q Consensus       388 Lg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  467 (729)
                      ||.|||+++|++|++|++++||+||||++|.|. .++....+++..|.....  ...   .     .|.           
T Consensus       154 Lg~iie~vtg~~~~~~~~~~i~~PLgm~~t~~~-~~~~~~~~~a~gy~~~~~--~~~---~-----~~~-----------  211 (358)
T 2qz6_A          154 FGHLAAQSLGQPFEKLMEQTVLPKLGLKHTFIS-VPETQMSLYAQGYDKAGK--PVR---V-----SPG-----------  211 (358)
T ss_dssp             HHHHHHHTTTSCHHHHHHHTTTGGGTCSSEESS-CCGGGGGGBCCCBCTTSC--BCC---C-----CCC-----------
T ss_pred             HHHHHHHHhCCCHHHHHHHhcccccCCcccccC-CCchhccceeeeeccCCc--eec---c-----CCC-----------
Confidence            999999999999999999999999999999663 344444455544422110  000   0     000           


Q ss_pred             ccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                 +  ...++||++||++||+||++++++++.++++
T Consensus       212 -----------~--~~~~aggl~sT~~Dl~~~~~~ll~~~~l~~~  243 (358)
T 2qz6_A          212 -----------A--LDAEAYGIKTSTSDLIHYVEVNMHPAKLEKP  243 (358)
T ss_dssp             -----------T--THHHHTCCEECHHHHHHHHHHHHCGGGSCHH
T ss_pred             -----------c--ccCCcceEEEcHHHHHHHHHHHhCCCCCCHH
Confidence                       0  0135789999999999999999999876543

>1zkj_A CMY-10, extended-spectrum beta-lactamase; plasmid, class C, hydrolase; 1.55A {Enterobacter aerogenes}

Probab=100.00  E-value=2.2e-50  Score=438.62  Aligned_cols=237  Identities=20%  Similarity=0.236  Sum_probs=202.0

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK  307 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~  307 (729)
                      .++.+++++.+++++++..+||++++|+++|+++++ +||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~G~~v~V~~~g~~~~~-~~G~~~~~~~~~~~~~t~f~iaS~tK~~Ta~~i~~Lve~G~l~   85 (359)
T 1zkj_A            7 DPLRPVVDASIQPLLKEHRIPGMAVAVLKDGKAHYF-NYGVANRESGAGVSEQTLFEIGSVSKTLTATLGAYAVVKGAMQ   85 (359)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEE-EEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCeEEEEEEECCEEEEE-EEEecccccCCCCCCCCeEechhhHHHHHHHHHHHHHHcCCCC
Confidence            456778999999999889999999999999999986 8999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhccCCccCCCCCCcHHHHhcCCCC-CCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHH
Q 004807          308 LEENIANIWPEFKSNGKDLIKVHHVLNHTSG-LHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGW  386 (729)
Q Consensus       308 ldd~v~~ylP~~~~~~~~~iTir~LLtHtSG-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~  386 (729)
                      |||||.+|||+|+...++.|||||||+|||| |+.+.+.       ...+.+++++.+...++.++||++|.|||.+|. 
T Consensus        86 Ldd~v~~ylP~~~~~~~~~iTir~LL~HtSG~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~y~-  157 (359)
T 1zkj_A           86 LDDKASRHAPWLKGSAFDSITMGELATYSAGGLPLQFPE-------EVDSSEKMRAYYRQWAPVYSPGSHRQYSNPSIG-  157 (359)
T ss_dssp             TTSBGGGGCGGGTTSGGGSSBHHHHHTTCSSCCCSSCCT-------TCCSHHHHHHHHHHCCCSSCTTTEECCCHHHHH-
T ss_pred             CCCcHHHhCcccccCCCCCcCHHHHhcCcCCCCCccCcc-------ccCCHHHHHHHHHhCCCCCCCCCceeecHHHHH-
Confidence            9999999999998766789999999999999 9876432       235788999999999999999999999999999 


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhh
Q 004807          387 LCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQL  466 (729)
Q Consensus       387 lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  466 (729)
                      |||.|||+++|++|++|++++||+||||++|.|. .++....+++..|.....  ...   .     .|.          
T Consensus       158 lLg~iie~vtg~~~~~~~~~~i~~PLgm~~t~~~-~~~~~~~~~a~gy~~~~~--~~~---~-----~~~----------  216 (359)
T 1zkj_A          158 LFGHLAASSLKQPFAPLMEQTLLPGLGMHHTYVN-VPKQAMASYAYGYSKEDK--PIR---V-----NPG----------  216 (359)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHTHHHHTTCSSCBSS-CCGGGGGGBCCEECTTCC--EEC---C-----CCC----------
T ss_pred             HHHHHHHHHhCCCHHHHHHHHcccccCCCcCccc-CCcccccCeeeeeccCCc--ccc---c-----CCC----------
Confidence            9999999999999999999999999999999663 444444555655532211  000   0     000          


Q ss_pred             hccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCC
Q 004807          467 AAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGV  508 (729)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~  508 (729)
                                  +  ...++||++||++||+||++++++++.
T Consensus       217 ------------~--~~~~aggl~sT~~Dl~~~~~~ll~~~~  244 (359)
T 1zkj_A          217 ------------M--LADEAYGIKTSSADLLRFVKANIGGVD  244 (359)
T ss_dssp             ------------T--THHHHHCCEECHHHHHHHHHHTTTCCS
T ss_pred             ------------c--cCCCCCeeEeCHHHHHHHHHHHhcCCC
Confidence                        0  013678999999999999999999887

>1ci9_A ESTB, protein (carboxylesterase); hydrolase, caboxylesterase; HET: DFP; 1.80A {Burkholderia gladioli} SCOP: e.3.1.1 PDB: 1ci8_A*

Probab=100.00  E-value=7.7e-50  Score=440.22  Aligned_cols=342  Identities=23%  Similarity=0.315  Sum_probs=247.1

Q ss_pred             chHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          227 HSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      ...+.+++++.+++.+++..+||++++|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|
T Consensus        15 ~~~l~~~l~~~~~~~~~~~~~~G~~v~V~~~g~~v~~~~~G~a~~~~~~p~~~dt~f~iaSvtK~~Ta~~i~~Lve~G~l   94 (392)
T 1ci9_A           15 AASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGEL   94 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSS
T ss_pred             hHHHHHHHHHHHHHHHhcCCCceEEEEEEECCeEEEEEEEeccccCCCCCCCCCCeEeeeechHHHHHHHHHHHHHcCCC
Confidence            36777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCchhhhccCCcc----CCCCCCcHHHHhcCCCCCCCCccC-----cc---cC--CCcCCCCHHHHHHHHHhcCCCCC
Q 004807          307 KLEENIANIWPEFKS----NGKDLIKVHHVLNHTSGLHNVSVD-----LS---SE--NPLLICDWDECLNRIALSAPETE  372 (729)
Q Consensus       307 ~ldd~v~~ylP~~~~----~~~~~iTir~LLtHtSGl~~~~~~-----~~---~~--~~~~~~~~~~~~~~l~~~~~~~~  372 (729)
                      +|||||.+|||+|..    ..++.|||||||+|||||+.....     +.   ..  .+....+.+++++.+...++.++
T Consensus        95 ~ldd~v~~ylP~~~~~~~~~~~~~ITir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (392)
T 1ci9_A           95 ALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFA  174 (392)
T ss_dssp             CTTSBGGGTCTTCCCBCTTSCCCCCBHHHHHHTCSSCCCHHHHCTTSHHHHHTCCCSSSCCSSCHHHHHHHHHHSBCSSC
T ss_pred             CCCCcHHHHhhhhccccCCcccCCCcHHHHhhccCCCCCCccccccchhHHHhhhccCCcCCCCHHHHHHHHhcCCcccC
Confidence            999999999999964    246899999999999999864221     00   00  11223588999999999999999


Q ss_pred             CCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCC
Q 004807          373 PGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDL  452 (729)
Q Consensus       373 PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  452 (729)
                      ||++|.||| +|. |||.|||+++|++|++|++++||+||||++|.|...   ...+++..|........ . .......
T Consensus       175 PG~~~~Ys~-~~~-lLg~iie~vtG~~~~~~~~~~I~~PLgm~~t~~~~~---~~~~~a~~y~~~~~~~~-~-~~~~~~~  247 (392)
T 1ci9_A          175 PGSGWQYSL-ALD-VLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSA---EPERFAVPYHDGQPEPV-R-MRDGIEV  247 (392)
T ss_dssp             TTSCCCCCT-HHH-HHHHHHHHHHTSCHHHHHHHHTHHHHTCCSCBSCCS---CGGGBCCCEECCSSSCE-E-CCTTEEE
T ss_pred             CCCCeeCcC-HHH-HHHHHHHHHhCCCHHHHHHHhCCCCCCCCcCCccCC---CcccceeeeecCCCCcc-c-ccccccc
Confidence            999999998 776 999999999999999999999999999999977432   23455655533211000 0 0000000


Q ss_pred             CCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcC-CCCCCCCCCCCCCCCCCCCCCCCCC
Q 004807          453 RLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADG-GVVPPPHSRLSKPPLGSHPHIPKFP  531 (729)
Q Consensus       453 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~g-g~~~~~~~~~~~~~l~~~~~~p~~~  531 (729)
                      ..+..+.. .    ....|...  ........|+||++||++||+||+++|+++ .++++                    
T Consensus       248 ~~~~g~~~-~----~~~~~~~~--~~~~~~~~g~ggl~sTa~Dl~~~~~~ll~~~~lls~--------------------  300 (392)
T 1ci9_A          248 PLPEGHGA-A----VRFAPSRV--FEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPE--------------------  300 (392)
T ss_dssp             ECCTTSCS-E----EEECGGGG--GCTTSCCCTTTCCEECHHHHHHHHHHHHHCSSSSCH--------------------
T ss_pred             cccccccc-c----cccccccc--cCCcccCcCCcccccCHHHHHHHHHHHhCCCcccCH--------------------
Confidence            00000000 0    00000000  000112357899999999999999999995 33333                    


Q ss_pred             CccccccccchhHHHHHHhhccCCCCcCCcccccccCCCccccccCCcchhhhhcccccCCCCCCCcCCCCCCCCCCccc
Q 004807          532 SHETSKKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNV  611 (729)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (729)
                                   +++++|.....                                                     .. 
T Consensus       301 -------------~~~~~m~~~~~-----------------------------------------------------~~-  313 (392)
T 1ci9_A          301 -------------TLADAARRDQA-----------------------------------------------------GV-  313 (392)
T ss_dssp             -------------HHHHHHHSCSS-----------------------------------------------------CG-
T ss_pred             -------------HHHHHHhccCc-----------------------------------------------------CC-
Confidence                         34555510000                                                     00 


Q ss_pred             ccccCCCcccccccccCCCCCCCCCCCccccceecccCC-----CCCcceeccCCCCCceeeeecCCCeEEEEEeccCCC
Q 004807          612 RKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTR-----DGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSF  686 (729)
Q Consensus       612 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~GlG~~~~~~~-----~~~~~~~gh~G~~G~~~~~~Pe~~~~vvvl~N~~~~  686 (729)
                               .+         ....+..+||+||++...+     ......|||+|.+|++++++|+.+++||+++|....
T Consensus       314 ---------~~---------~~~~~~~~yGlG~~~~~~~~~~~~~~~~g~~g~~G~~gs~~~~~P~~~~~vv~l~N~~~~  375 (392)
T 1ci9_A          314 ---------GA---------ETRGPGWGFGYLSAVLDDPAAAGTPQHAGTLQWGGVYGHSWFVDRALGLSVLLLTNTAYE  375 (392)
T ss_dssp             ---------GG---------CTTSTTEEECSSSEEESCHHHHTCSSCTTCEEEEETTTEEEEEEGGGTEEEEEEESEETH
T ss_pred             ---------cc---------cCCCCCCceeeeEEEecccccccCCCCCCeEeeCCccccEEEEECCCCEEEEEEEecCCC
Confidence                     00         0001134899999985421     123446899999999999999999999999998765


Q ss_pred             C
Q 004807          687 G  687 (729)
Q Consensus       687 ~  687 (729)
                      +
T Consensus       376 ~  376 (392)
T 1ci9_A          376 G  376 (392)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2wzx_A Beta-lactamase; inhibitor, hydrolase, antibiotic resistance; HET: ZX0; 1.40A {Pseudomonas aeruginosa} PDB: 2wzz_A* 3s1y_A* 3s22_A*

Probab=100.00  E-value=3.2e-50  Score=439.11  Aligned_cols=242  Identities=22%  Similarity=0.290  Sum_probs=202.7

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK  307 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~  307 (729)
                      .++.+++++.+++++++..+||++++|+++|++++. +||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+
T Consensus         6 ~~~~~~l~~~i~~~~~~~~~~G~~v~v~~~g~~~~~-~~G~~~~~~~~p~~~~t~f~iaS~tK~~Ta~~i~~Lve~G~l~   84 (371)
T 2wzx_A            6 DRLKALVDAAVQPVMKANDIPGLAVAISLKGEPHYF-SYGLASKEDGRRVTPETLFEIGSVSKTFTATLAGYALTQDKMR   84 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEE-EEEBSCTTTCCBCCTTCEEECGGGHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEEEEECCEEEEE-EEeeccccCCCCCCCCCEEeehhhHHHHHHHHHHHHHHcCCCC
Confidence            467888999999999999999999999999999985 8999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhccCCccCCCCCCcHHHHhcCCCC-CCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHH
Q 004807          308 LEENIANIWPEFKSNGKDLIKVHHVLNHTSG-LHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGW  386 (729)
Q Consensus       308 ldd~v~~ylP~~~~~~~~~iTir~LLtHtSG-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~  386 (729)
                      |||||.+|||+|+...++.|||||||+|||| |+...+...      ..+.+++++.+.+.++.++||++|.|||.+|. 
T Consensus        85 Ldd~v~~ylP~~~~~~~~~ITir~LL~HtSG~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~-  157 (371)
T 2wzx_A           85 LDDRASQHWPALQGSRFDGISLLDLATYTAGGLPLQFPDSV------QKDQAQIRDYYRQWQPTYAPGSQRLYSNPSIG-  157 (371)
T ss_dssp             TTSBGGGGCGGGTTSGGGGCBHHHHHTTCSSCCCSSCCTTC------CSCHHHHHHHHHHCCCSSCTTSEECCCHHHHH-
T ss_pred             CCCcHHHhCcccccCCCCCccHHHHhcCCCCCCCccCCccc------cCCHHHHHHHHHhCCCCCCCCCceeecHHHHH-
Confidence            9999999999998766789999999999999 987543211      13788999999999999999999999999998 


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhh
Q 004807          387 LCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQL  466 (729)
Q Consensus       387 lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  466 (729)
                      |||.|||+++|++|++|++++||+||||++|.|. .+.....+.+..|.....  ...   .     .|.          
T Consensus       158 lLg~iie~vtG~~~~~~~~~~i~~PLGm~~t~~~-~~~~~~~~~a~gy~~~~~--~~~---~-----~~~----------  216 (371)
T 2wzx_A          158 LFGYLAARSLGQPFERLMEQQVFPALGLEQTHLD-VPEAALAQYAQGYGKDDR--PLR---V-----GPG----------  216 (371)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHTHHHHTTCSSEESS-CCGGGGGGBCCCBCGGGC--BCC---C-----CCC----------
T ss_pred             HHHHHHHHHhCCCHHHHHHHhccccCCCCccccC-CCccccccccccccCCCC--ccc---c-----CCc----------
Confidence            9999999999999999999999999999999663 344344445544422110  000   0     000          


Q ss_pred             hccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          467 AAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                  +  ...++||++||++||+||++++++++.++++
T Consensus       217 ------------~--~~~~aggl~sT~~Dl~~~~~~ll~~~~l~~~  248 (371)
T 2wzx_A          217 ------------P--LDAEGYGVKTSAADLLRFVDANLHPERLDRP  248 (371)
T ss_dssp             ------------T--THHHHHCCEEEHHHHHHHHHHHHCGGGSCHH
T ss_pred             ------------c--ccCCcCeEEECHHHHHHHHHHHhCCCCCCHH
Confidence                        0  0126789999999999999999999876543

>2ffy_A Beta-lactamase; AMPC, deacylation, transition state, boronic acid, hydrolase; HET: SM3; 1.07A {Escherichia coli} SCOP: e.3.1.1 PDB: 1pi5_A* 1pi4_A* 2hds_A* 1c3b_A* 1fco_A* 1ga9_A* 1iem_A* 1kds_A* 1kdw_A* 1ke0_A* 1ke3_A* 1iel_A 1kvm_A* 1l2s_A* 1ll5_A* 1ll9_A* 1llb_A* 1mxo_A* 1my8_A* 1xgi_A* ...

Probab=100.00  E-value=3.5e-50  Score=436.88  Aligned_cols=241  Identities=22%  Similarity=0.280  Sum_probs=204.9

Q ss_pred             chHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          227 HSDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      ..++.+++++.+++++++..+||++++|+++|+++++ +||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~G~~v~v~~~g~~~~~-~~G~~~~~~~~~~~~~t~f~iaS~tK~~Ta~~i~~Lve~G~l   80 (358)
T 2ffy_A            2 PQQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYF-TWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEI   80 (358)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEE-EEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHhcCCCceEEEEEEECCEEEEE-EEeecccccCCCCCCCCeEEeeeeHHHHHHHHHHHHHHcCCC
Confidence            3567889999999999989999999999999999986 899999999999999999999999999999999999999999


Q ss_pred             CccCchhhhccCCccCCCCCCcHHHHhcCCCC-CCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHH
Q 004807          307 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSG-LHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG  385 (729)
Q Consensus       307 ~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSG-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~  385 (729)
                      +|||||.+|||+|+...++.|||||||+|||| ++...+.       ...+.+++++.+...++.++||++|.|||.+|.
T Consensus        81 ~Ldd~v~~ylP~~~~~~~~~iTir~LL~HtSG~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~  153 (358)
T 2ffy_A           81 KLSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQVPD-------EVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG  153 (358)
T ss_dssp             CTTSBHHHHCTTCCSGGGTTCBHHHHHHTCSSCCCSSCCT-------TCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHH
T ss_pred             CCCCcHHHhCcccccCCCCCcCHHHHhhCcCCCCCccCcc-------ccCCHHHHHHHHHhCCCCCCCCCceeecHHHHH
Confidence            99999999999998666789999999999999 9875322       235788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhh
Q 004807          386 WLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQ  465 (729)
Q Consensus       386 ~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  465 (729)
                       |||.|||+++|++|++|++++||+||||++|.|. .++....+.+..|.. .  ....   .     .|.         
T Consensus       154 -lLg~iie~vtg~~~~~~~~~~i~~PLgm~~t~~~-~~~~~~~~~a~gy~~-~--~~~~---~-----~~~---------  211 (358)
T 2ffy_A          154 -LFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWIN-VPPAEEKNYAWGYRE-G--KAVH---V-----SPG---------  211 (358)
T ss_dssp             -HHHHHHTGGGTSCHHHHHHHHTTTTTTCTTCBSS-CCGGGGGGBCCEEET-T--EEEC---C-----CCC---------
T ss_pred             -HHHHHHHHHhCCCHHHHHHHhcccccCCCCcccC-CCcccccCeeeeEec-C--Cccc---c-----ccc---------
Confidence             9999999999999999999999999999999663 344444555555532 1  0000   0     000         


Q ss_pred             hhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          466 LAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                   +  ...++||++||++||+||++++++++.++++
T Consensus       212 -------------~--~~~~aggl~sT~~Dl~~~~~~ll~~~~~~~~  243 (358)
T 2ffy_A          212 -------------A--LDAEAYGVKSTIEDMARWVQSNLKPLDINEK  243 (358)
T ss_dssp             -------------T--THHHHTCCEECHHHHHHHHHHHHCGGGCSSH
T ss_pred             -------------c--ccCCCceEEECHHHHHHHHHHHhCCCCCChH
Confidence                         0  0136899999999999999999999988765

>2qmi_A PBP related beta-lactamase; PAB87, octamer, LU-HPDO3A, archaea, hydrolase; HET: DO3; 2.20A {Pyrococcus abyssi}

Probab=100.00  E-value=3e-49  Score=442.42  Aligned_cols=243  Identities=24%  Similarity=0.367  Sum_probs=196.1

Q ss_pred             HHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCc
Q 004807          232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEEN  311 (729)
Q Consensus       232 ~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~  311 (729)
                      +++++.+++.+++.++||++++|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+||||
T Consensus         4 ~~l~~~i~~~~~~~~~pG~~v~V~~~g~~v~~~~~G~~~~~~~~~~~~dT~f~iaSvTK~fTa~~i~~Lve~G~l~Lddp   83 (447)
T 2qmi_A            4 GKLESFIVEKMAERKVPGISISIIKDGDVVYAKGFGYRNVEARLPSTPETIYGIGSITKSFTALAIMKLVEEGGLSLDDP   83 (447)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEEEEEETTTTEECCSSCBEECGGGHHHHHHHHHHHHHHTTSCCTTSB
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEECCEEEEEEeeeccccccCCCCCCCCEEecceehHHHHHHHHHHHHHcCCCCCCCc
Confidence            56888888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcc-CCccCCCCCCcHHHHhcCCCCCCCCccC--c---ccCC--CcCCCCHHHHHHHHHh--cCCCCCCCCceeccc
Q 004807          312 IANIWP-EFKSNGKDLIKVHHVLNHTSGLHNVSVD--L---SSEN--PLLICDWDECLNRIAL--SAPETEPGQEQLYHY  381 (729)
Q Consensus       312 v~~ylP-~~~~~~~~~iTir~LLtHtSGl~~~~~~--~---~~~~--~~~~~~~~~~~~~l~~--~~~~~~PG~~~~Ysn  381 (729)
                      |.+||| +|...+ +.|||||||+|||||+.+...  +   ...+  .....+.+++++.+..  .++.++||++|.|||
T Consensus        84 v~~ylP~~~~~~~-~~ITir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~PG~~~~Ysn  162 (447)
T 2qmi_A           84 VEKFVNIKLRPFG-EPVTVHHLLTHSSGIPSLGYAEAFIDGMVGGDNWLPVSTPEETIAFARDMEKWAVAKPGERFFYLN  162 (447)
T ss_dssp             GGGTSSSCCCGGG-CCCBHHHHHTTCSSCCBCSHHHHHHHHHTTCSCCCCCCSHHHHHHHGGGGGGGCCSCTTSCCCCCH
T ss_pred             HHHhCChhhcCCC-CCCcHHHHhhccCCCCCCCcchhhhhhhccccccCCCCCHHHHHHHHHhcccccccCCCCceeEch
Confidence            999999 997654 799999999999999976420  0   0001  1123568889888865  468899999999999


Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcc
Q 004807          382 LSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPD  461 (729)
Q Consensus       382 ~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  461 (729)
                      .+|. |||.|||+++|++|++|++++||+||||++|.|.........+.+..|.....+...                  
T Consensus       163 ~gy~-lLg~iiE~vtG~~~~~~~~~~I~~PLGm~~t~~~~~~~~~~~~~a~~y~~~~~g~~~------------------  223 (447)
T 2qmi_A          163 TGYV-LLGKIIEKVSGVSYEEYIKKKILEPLGMNRSYFFKEEVEKDKDVAMGYILDKEGRLV------------------  223 (447)
T ss_dssp             HHHH-HHHHHHHHHHSSCHHHHHHHHTTTTTTCTTCBSSHHHHTTCSCBCCEEEECTTSCEE------------------
T ss_pred             HHHH-HHHHHHHHHhCCCHHHHHHHHhccccCCCCcccccccccccCcccccceeCCCCCCc------------------
Confidence            9999 999999999999999999999999999999977422111223444444321111000                  


Q ss_pred             hhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCC
Q 004807          462 KISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGV  508 (729)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~  508 (729)
                               |.  +.+   ....|+||++||++||+||+++++++|.
T Consensus       224 ---------~~--~~~---~~~~~aggl~sT~~Dla~~~~~ll~~g~  256 (447)
T 2qmi_A          224 ---------PQ--PFP---YGITADGGLLSSVLDLAKYLKMYIERDE  256 (447)
T ss_dssp             ---------EE--CCC---TTCCTTTCCEECHHHHHHHHHHHHTTCC
T ss_pred             ---------cc--cCc---ccccCCCccccCHHHHHHHHHHHHhCCC
Confidence                     00  000   0236899999999999999999999863

>3o3v_A Beta-lactamase, CLBP protein; alpha/beta, disulfide bridge, hydrolase; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-49  Score=427.15  Aligned_cols=238  Identities=20%  Similarity=0.266  Sum_probs=191.0

Q ss_pred             HHHHHHHHhccCCCCceEEEEE-EecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCc
Q 004807          233 KLRDFLVELGNDGKILGIQVCA-YKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEEN  311 (729)
Q Consensus       233 ~l~~~l~~~~~~~~~~G~sv~v-~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~  311 (729)
                      ++++.+++.+++..+||++++| +++|++++  +||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+||||
T Consensus         2 ~l~~~i~~~~~~~~~pG~~v~v~~~~g~~~~--~~G~~~~~~~~~~~~~t~f~i~SitK~~ta~~i~~lve~G~l~ld~~   79 (335)
T 3o3v_A            2 RLSTLIHQRMQEAKVPALSVSVTIKGVRQRF--VYGVADVASQKANTLDTVYELGSMSKAFTGLVVQILIQEGRLRQGDD   79 (335)
T ss_dssp             CHHHHHHHHHHHHTCSEEEEEEEETTEEEEE--EEEEEETTTTEECCTTCBEECGGGGHHHHHHHHHHHHHTTSCCTTSB
T ss_pred             hHHHHHHHHHHhcCCCcEEEEEEEeCCEEEE--EEEeccccCCCCCCCCCEeehhhhHHHHHHHHHHHHHHCCCCCCCCc
Confidence            4678888888889999999999 99999998  99999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCccC---CCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHH
Q 004807          312 IANIWPEFKSN---GKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLC  388 (729)
Q Consensus       312 v~~ylP~~~~~---~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lL  388 (729)
                      |.+|||++...   .++.|||||||+|||||+.........    ..+.+.+++.+...++.++||++|.|||.+|. ||
T Consensus        80 v~~ylp~~~~~~~~~~~~iTi~~LL~htSGl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~-lL  154 (335)
T 3o3v_A           80 IITYLPEMRLNYQGKPASLTVADFLYHTSGLPFSTLARLEN----PMPGSAVAQQLRNENLLFAPGAKFSYASANYD-VL  154 (335)
T ss_dssp             HHHHCTTCCEEETTEECCCBHHHHHTTCSCCCTHHHHHHHS----CCSSCCHHHHSTTEECSSCTTSCCCCCTTHHH-HH
T ss_pred             hHHhCcccccccCCCCCCccHHHHhhccCCCCCcccccccc----cCChHHHHHHHhcCCcccCCCCceeEchHHHH-HH
Confidence            99999999732   247899999999999999753221110    11223457777888999999999999999999 99


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhc
Q 004807          389 GGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAA  468 (729)
Q Consensus       389 g~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  468 (729)
                      |.|||+++|++|++|++++||+||||++|.|.. ++....+.+..|...... ...                        
T Consensus       155 g~iie~vtg~~~~~~~~~~i~~PLgm~~t~~~~-~~~~~~~~a~gy~~~~~~-~~~------------------------  208 (335)
T 3o3v_A          155 GAVIENVTGKTFTEVIAERLTQPLGMSATVAVK-GDEIIVNKASGYKLGFGK-PVL------------------------  208 (335)
T ss_dssp             HHHHHHHHSSCHHHHHHHHTHHHHTCSSCEECC-SSCCCTTBCCCBCCSSSC-CBC------------------------
T ss_pred             HHHHHHHhCCCHHHHHHHHhccccCCCccccCc-ccccccCccccccccCCC-cee------------------------
Confidence            999999999999999999999999999997743 333344555554321100 000                        


Q ss_pred             cccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCC
Q 004807          469 ITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVV  509 (729)
Q Consensus       469 ~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~  509 (729)
                           .+.+ ......|+||++||++||+||++++++++..
T Consensus       209 -----~~~~-~~~~~~~aggl~sT~~Dl~~~~~~ll~~g~~  243 (335)
T 3o3v_A          209 -----FHAP-LARNHVPAAYIHSTLPDMEIWIDAWLHRKAL  243 (335)
T ss_dssp             -----CCSC-CCSTTHHHHTEEECHHHHHHHHHHHHTGGGS
T ss_pred             -----ccCc-cccCCCCCcccEeCHHHHHHHHHHHcCCCCc
Confidence                 0000 0112247899999999999999999987643

>3tg9_A Penicillin-binding protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.20A {Bacillus halodurans}

Probab=100.00  E-value=7.4e-50  Score=434.16  Aligned_cols=241  Identities=21%  Similarity=0.269  Sum_probs=192.0

Q ss_pred             HHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          234 LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       234 l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +++.+++++++..+||+ ++|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+|||||.
T Consensus         3 ld~~i~~~~~~~~~~G~-v~v~~~g~~v~~~~~G~a~~~~~~p~~~~t~f~iaSitK~~Ta~~i~~Lve~G~l~Ldd~v~   81 (356)
T 3tg9_A            3 MKNHLHTIMEDWKLSGT-ALMKKGEDIPFIASLGFANRAERIPNEHHTRFGIASGCKLFTAIAICQLVEAGKLSFDTPLS   81 (356)
T ss_dssp             CCCHHHHHHHHHTCCEE-EEEEETTSCCEEEEESEEETTTTEECCTTCBEECGGGGHHHHHHHHHHHHHHTSCCTTCBGG
T ss_pred             HHHHHHHHHHhCCCCeE-EEEEECCeEEEEeeecccccccCCCCCCCCeEEcccchHHHHHHHHHHHHHcCCCCcccCHH
Confidence            45667777888899999 56889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcc-CCccCCCCCCcHHHHhcCCCCCCCCccCccc---------CCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCc
Q 004807          314 NIWP-EFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS---------ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLS  383 (729)
Q Consensus       314 ~ylP-~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~  383 (729)
                      +||| +|     +.|||||||+|||||+++......         .......+.+++++.+...++.++||++|.|||.+
T Consensus        82 ~ylP~~~-----~~ITir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~  156 (356)
T 3tg9_A           82 DWLDAPF-----PNVTIHHLLTHTSGVPDYFDEEITDDFEDLWKDVPMYHLRRLKDFLPLFQHAPMKFPPGHRFHYNNAG  156 (356)
T ss_dssp             GTCSSCC-----TTCBHHHHHTTCSCCCCSCCC-------CGGGTSCGGGCCSGGGGGGGTTTSCCCSCTTSCCCCCHHH
T ss_pred             HhCCCCc-----CCccHHHHhhCcCCCCCcccchhhhhHHHhhcccccccccCHHHHHHHHhhCCCCCCCCCCceeCcHH
Confidence            9999 77     689999999999999986432110         01112346677888888889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchh
Q 004807          384 FGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKI  463 (729)
Q Consensus       384 ~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  463 (729)
                      |. |||.|||+++|++|++|++++||+||||++|.|... +....+.+..|....+.....                   
T Consensus       157 ~~-lLg~iie~vtg~~~~~~~~~~I~~PLGm~~t~~~~~-~~~~~~~a~gy~~~~~~~~~~-------------------  215 (356)
T 3tg9_A          157 FI-LLGLVVESVSGVTFQEYVEANVFQRAGMHESGYFAF-DTLPAKTALGYIDLEDGSWKT-------------------  215 (356)
T ss_dssp             HH-HHHHHHHHHHSSCHHHHHHHHTHHHHTCTTCBCCBG-GGCCSSBCCCEEECTTSCEEE-------------------
T ss_pred             HH-HHHHHHHHHhCCCHHHHHHHHhhcccCCcccccCCc-cccCcccceeeeecCCCceee-------------------
Confidence            98 999999999999999999999999999999977432 233334444443221110000                   


Q ss_pred             hhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          464 SQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                 +.........|+||++||++||+||+++++++.+++++
T Consensus       216 -----------~~~~~~~~~~~aggl~sT~~Dl~~~~~~ll~~~lls~~  253 (356)
T 3tg9_A          216 -----------NLYSLPVIGGSDGGAYVTAEDMMKLWLALMRHELLNET  253 (356)
T ss_dssp             -----------STTTSCSBCCSSSCCEECHHHHHHHHHHHHTTSSSCHH
T ss_pred             -----------ccccCCccccCCccEEECHHHHHHHHHHHhcCCCCCHH
Confidence                       00000112258999999999999999999998666554

>3hlc_A Transesterase, LOVD; alpha/beta hydrolase fold, transferase; HET: PG4; 2.00A {Aspergillus terreus} PDB: 3hld_A* 3hlf_A* 3hle_A* 3hlg_A* 3hlb_A 3hl9_A

Probab=100.00  E-value=1.7e-49  Score=441.80  Aligned_cols=363  Identities=16%  Similarity=0.159  Sum_probs=251.0

Q ss_pred             chHHHHHHHHHHHHhccCCCCceEEEEEE-ecceeEEEeeeeecCCCCCC-----CCCCCCccccccchHHHHHHHHHHH
Q 004807          227 HSDVEAKLRDFLVELGNDGKILGIQVCAY-KDGEVIIDTSAGMLGRYDPR-----PVQPDSLFPVFSVTKGITAGMLHWL  300 (729)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~~~~G~sv~v~-~~g~~v~~~~~G~~~~~~~~-----p~~~~t~f~i~SitK~~ta~~v~~l  300 (729)
                      ..++.+++++.+++.+++..+||++++|+ ++|+++++++||+++.+.+.     |+++||+|+|+|+||+|||+++++|
T Consensus        29 ~~~~~~~l~~~l~~~~~~~~~pG~~v~vv~~~G~iv~~~~~G~~~~~~~~~~~~~p~~~dt~f~i~S~TK~~ta~~i~~L  108 (432)
T 3hlc_A           29 AAGPVVLMETAFRKAVESRQIPGAVIMARDASGNLNYTRCFGARTVRRDENNQLPPLQVDTPCRLASATKLLTTIMVLQC  108 (432)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSCSEEEEEEEESSSSCEEEEEEEBSCSSCCTTSCCCBCCTTCCEECGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCeEEEEEEecCCeEEEEeeeeeccccccCccCCCCCCCCCEEEchhhHHHHHHHHHHHH
Confidence            35678889999999999999999999988 89999999999999999887     9999999999999999999999999


Q ss_pred             HHCCCCCccCchhhhccCCccC-----------------CCCCCcHHHHhcCCCCCCCCccCcc-----cCCCcCCCCHH
Q 004807          301 VDNGKLKLEENIANIWPEFKSN-----------------GKDLIKVHHVLNHTSGLHNVSVDLS-----SENPLLICDWD  358 (729)
Q Consensus       301 ve~G~l~ldd~v~~ylP~~~~~-----------------~~~~iTir~LLtHtSGl~~~~~~~~-----~~~~~~~~~~~  358 (729)
                      +|+|+|+|||||.+|||+|...                 .++ |||||||+|||||+.......     ..........+
T Consensus       109 ve~G~l~Lddpv~~ylPe~~~~~v~~~~~~~~~~~~~~~~~~-ITir~LLthtSGl~~~~~~~~~~~~~~~~~~~~~~~~  187 (432)
T 3hlc_A          109 MERGLVDLDETVDRLLPDLSAMPVLEGFDDAGNARLRERRGK-ITLRHLLTHTSGLSYVFLHPLLREYMAQGYLQSAEKF  187 (432)
T ss_dssp             HHTTSCCTTSBTTTTCHHHHTCCEEEEECTTCCEEEECCSSC-CBHHHHHTTCSSCCCGGGCHHHHHHHHTTCCCC----
T ss_pred             HHCCCCCCCCcHHHhhhhhcccccccccccccCccccCCCCC-CcHHHHHhCcCCCCCCCCChhHHHHHhcCCCCCCcHH
Confidence            9999999999999999998652                 134 999999999999986432110     00000012223


Q ss_pred             HHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCC-CCCccccccceeccC
Q 004807          359 ECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGI-PPGVESRLASLTIDT  437 (729)
Q Consensus       359 ~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~-~~~~~~~~a~~~~~~  437 (729)
                      .+.. +...++.++||+.|.|| .+|. +||.|||+++|++|++|++++||+||||++|.|... .+....+++..|...
T Consensus       188 ~~~~-~~~~pl~~~PG~~~~Ys-~~~~-lLg~iie~vtG~~~~~~~~~~I~~PLGm~~t~f~~~~~~~~~~~~a~~~~~~  264 (432)
T 3hlc_A          188 GIQS-RLAPPAVNDPGAEWIYG-TNLD-WAGKLVERATGLDLEQYLQENICAPLGITDMTFKLQQRPDMLARRADQTHRN  264 (432)
T ss_dssp             -----CSCSCBSSCTTSCCCCC-THHH-HHHHHHHHHHSSCHHHHHHHHTHHHHTCCSEESCGGGCHHHHHHCCCEEEEC
T ss_pred             HHHH-HhcCCCccCCCCCeecc-hHHH-HHHHHHHHHHCCCHHHHHHHHHhcccCCccceecCCCChHHhcccccceeEC
Confidence            3333 34468899999999999 7998 999999999999999999999999999999977432 134455666666443


Q ss_pred             cccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCCCCCCC
Q 004807          438 DDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLS  517 (729)
Q Consensus       438 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~~~~~~  517 (729)
                      .++.....         +.                ............|+||++||++||+||+++++++|   ++   + 
T Consensus       265 ~~g~~~~~---------~~----------------~~~~~~~~~~~~g~gGl~sTa~Dlarf~~~ll~~g---~~---l-  312 (432)
T 3hlc_A          265 SADGRLRY---------DD----------------SVYFRADGEECFGGQGVFSSPGSYMKVLHSLLKRD---GL---L-  312 (432)
T ss_dssp             TTTCCEEE---------EC----------------CGGGTCCCSSCCTTTCCEECHHHHHHHHHHHHHTC---SS---S-
T ss_pred             CCCceeec---------CC----------------cccccCCCCCCcCCCcceECHHHHHHHHHHHHhCC---Cc---c-
Confidence            22211100         00                00000011223589999999999999999999965   11   0 


Q ss_pred             CCCCCCCCCCCCCCCccccccccchhHHHHHHhhccCCCCcCCcccccccCCCccccccCCcchhhhhcccccCCCCCCC
Q 004807          518 KPPLGSHPHIPKFPSHETSKKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTT  597 (729)
Q Consensus       518 ~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  597 (729)
                                              .|+++++.|........                       .               
T Consensus       313 ------------------------Ls~~~v~~m~~~~~~~~-----------------------~---------------  330 (432)
T 3hlc_A          313 ------------------------LQPQTVDLMFQPALEPR-----------------------L---------------  330 (432)
T ss_dssp             ------------------------SCHHHHHHHTSCCCCHH-----------------------H---------------
T ss_pred             ------------------------CCHHHHHHHhccCCCch-----------------------h---------------
Confidence                                    12334444410000000                       0               


Q ss_pred             cCCCCCCCCCCcccccccCCCcccccccccCCCCCCCCCCCccccceecccCC-----CCCcceeccCCCCCceeeeecC
Q 004807          598 DSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTR-----DGSYIGFGHSGMGGSTGFCDVN  672 (729)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~GlG~~~~~~~-----~~~~~~~gh~G~~G~~~~~~Pe  672 (729)
                                ...+...+..+...+ +.+ |   .......+|||||++...+     ..+...|+|+|++|+++|+||+
T Consensus       331 ----------~~~~~~~~~~~~~~~-~~~-~---~~~~~~~gyGlg~~~~~~~~~~~~~~~~g~~~w~G~~g~~~~vdP~  395 (432)
T 3hlc_A          331 ----------EEQMNQHMDASPHIN-YGG-P---MPMVLRRSFGLGGIIALEDLDGENWRRKGSLTFGGGPNIVWQIDPK  395 (432)
T ss_dssp             ----------HHHHHHHHHTCTTTC-TTT-T---SCSSCCEEECSSSEEESSCSSTTSSCCTTCEEEEETTTEEEEEETT
T ss_pred             ----------hhhhhhhcccccccc-ccc-C---CCCCCCCcCccceEEEecCccCCCCCCCceeEeCCcccCeEEEEcc
Confidence                      000000000000000 000 0   0011246899999986432     2344679999999999999999


Q ss_pred             CCeEEEEEeccCCCCc-----chHHHHHHHHHhhC
Q 004807          673 NRFAIAVTLNKMSFGA-----TTGRIIHFVCSELN  702 (729)
Q Consensus       673 ~~~~vvvl~N~~~~~~-----~~~~~~~~v~~~l~  702 (729)
                      ++++||+++|..+.++     ...++.++|+++|+
T Consensus       396 ~~l~~v~~tn~~p~~~~~~~~~~~~~~~~vy~al~  430 (432)
T 3hlc_A          396 AGLCTLAFFQLEPWNDPVCRDLTRTFEHAIYAQYQ  430 (432)
T ss_dssp             TTEEEEEECCEESSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEEcCCCCcCcchHHHHHHHHHHHHHHhh
Confidence            9999999999987664     46778888888774

>1ei5_A D-aminopeptidase, DAP; penicillin binding protein, alpha/beta domain, beta barrel domain, hydrolase; 1.90A {Ochrobactrum anthropi} SCOP: b.61.3.1 b.61.3.1 e.3.1.1

Probab=100.00  E-value=3.7e-47  Score=432.30  Aligned_cols=238  Identities=20%  Similarity=0.207  Sum_probs=187.7

Q ss_pred             HHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCc
Q 004807          232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEEN  311 (729)
Q Consensus       232 ~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~  311 (729)
                      +++++.+++++++..+||++++|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+++| |+||||
T Consensus         7 ~~l~~~l~~~~~~~~~pG~~v~V~~~g~~v~~~~~G~~~~~~~~~~~~dT~f~iaSvTK~fTa~~i~~Lve~G-l~Lddp   85 (520)
T 1ei5_A            7 SALEAFVRHIPQNYKGPGGVVAVVKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQFTCAVLLDAVGEP-ELLDDA   85 (520)
T ss_dssp             HHHHHHHHTHHHHSCSSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCCEECGGGHHHHHHHHHHHHTCSG-GGGHHH
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEECCEEEEEEEEEecccccCCCCCCCCeEechhhHHHHHHHHHHHHHHcC-CCCCCc
Confidence            4677777777777899999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             hhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCc--ccCCCcCCCCHHHHHHHHHhc-CCCCCCCCceecccCcHHHHH
Q 004807          312 IANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDL--SSENPLLICDWDECLNRIALS-APETEPGQEQLYHYLSFGWLC  388 (729)
Q Consensus       312 v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~~~~PG~~~~Ysn~~~~~lL  388 (729)
                      |.+|||+|+.   +.|||||||+|||||+++....  ....+...++.+++.+.+... ++.++||++|.|||.+|. ||
T Consensus        86 v~~ylP~~~~---~~ITir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~PG~~~~Ysn~gy~-lL  161 (520)
T 1ei5_A           86 LEAYLDKFED---ERPAVRDLCNNQSGLRDYWALSVLCGADPEGVFLPAQAQSLLRRLKTTHFEPGSHYSYCNGNFR-IL  161 (520)
T ss_dssp             HHHHTTTCCS---CCCCHHHHHTTCSCCCCHHHHHHHTTCCTTCCBCHHHHHHHHHTCCCCSSCTTSSCCCCHHHHH-HH
T ss_pred             HHHhcCcCCC---CCCCHHHHHhCcCCCCCcccchhhccCCcccCCCHHHHHHHHHhcCcccCCCCCceEECcHHHH-HH
Confidence            9999999974   6899999999999999753211  111222234677777777764 568999999999999998 99


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhc
Q 004807          389 GGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAA  468 (729)
Q Consensus       389 g~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  468 (729)
                      |.|||+++|++|++|++++||+||||++|.+.... .. ...+..|........                          
T Consensus       162 g~iiE~vtG~~~~~~l~~~I~~PLGm~~t~~~~~~-~~-~~~a~gy~~~~~~~~--------------------------  213 (520)
T 1ei5_A          162 ADLIEAHTGRTLVDILSERIFAPAGMKRAELISDT-AL-FDECTGYEGDTVRGF--------------------------  213 (520)
T ss_dssp             HHHHHHHHTSCHHHHHHHHTHHHHTCTTCEECCBG-GG-CCSSCCEEEETTTEE--------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHhhhcccCCCccCcCCcc-cc-cccccccccCccccc--------------------------
Confidence            99999999999999999999999999998763221 11 111222211000000                          


Q ss_pred             cccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCC
Q 004807          469 ITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGV  508 (729)
Q Consensus       469 ~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~  508 (729)
                       .|. .+.    ..+.|+||++||++||+||+++++++..
T Consensus       214 -~~~-~~~----~~~~g~gGl~sT~~Dl~r~~~~l~~~~~  247 (520)
T 1ei5_A          214 -LPA-TNR----IQWMGDAGICASLNDMIAWEQFIDATRD  247 (520)
T ss_dssp             -EEC-CCC----BBCCSSSCEEECHHHHHHHHHHHHHTTT
T ss_pred             -ccc-ccc----ccccCCcccccCHHHHHHHHHHHhhCCC
Confidence             000 000    1235889999999999999999887543

>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A {Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A 2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A* 2zly_A* 2zm9_A* 2zm2_A*

Probab=100.00  E-value=1.9e-46  Score=411.44  Aligned_cols=299  Identities=16%  Similarity=0.162  Sum_probs=225.9

Q ss_pred             HHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhc
Q 004807          237 FLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIW  316 (729)
Q Consensus       237 ~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~yl  316 (729)
                      .+++++++..++|  ++|+++|+++++++||.        ++++|+|+|+|+||+|||+++++|+|+|+|+|||||.+||
T Consensus        72 ~l~~~l~~~~~~g--v~V~~~G~iv~~~~~G~--------~~~~t~f~i~SvTK~~Ta~~i~~Lve~G~l~lddpv~~yl  141 (392)
T 2dcf_A           72 DLEQRLEQTYTDA--FLVLRGTEVVAEYYRAG--------FAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYV  141 (392)
T ss_dssp             THHHHHHHTTEEE--EEEEETTEEEEEEECTT--------CCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGGTC
T ss_pred             hHHHHHHhcCCCE--EEEEECCEEEEEeccCC--------CCCCCeeeeeeeHHHHHHHHHHHHHHCCCCCCcCcHHHhh
Confidence            3444444467787  47889999999999984        5899999999999999999999999999999999999999


Q ss_pred             cCCccCCCCCCcHHHHhcCCCCCCCCccCcccC------------CCc-CCCCHHHHHHHHHhcCCCCCCCCceecccCc
Q 004807          317 PEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSE------------NPL-LICDWDECLNRIALSAPETEPGQEQLYHYLS  383 (729)
Q Consensus       317 P~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~------------~~~-~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~  383 (729)
                      |+++...++.|||||||+||||++.........            .+. ..+ .+++.+.+...++.+ ||+.|.|||.+
T Consensus       142 Pe~~~~~~~~iTir~LL~htSGl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-PG~~~~Ysn~~  219 (392)
T 2dcf_A          142 PELAGSVYDGPSVLQVLDMQISIDYNEDYVDPASEVQTHDRSAGWRTRRHGD-PADTYEFLTTLRGDG-STGEFQYCSAN  219 (392)
T ss_dssp             GGGTTSTTSSCBHHHHHTTCBCCSCCCCSSCTTSHHHHHHHHHTSSCCCTTC-CSSHHHHHHTCCCCS-CBSSCCCCHHH
T ss_pred             hhccCCCCCCCcHHHHHhcccCCCCccccCCcchHHHHHHhhcccccccccC-hHHHHHHHHhCcccC-CCceeEECChh
Confidence            999877789999999999999998532110000            000 000 456777788888888 99999999999


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchh
Q 004807          384 FGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKI  463 (729)
Q Consensus       384 ~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  463 (729)
                      |. |||.|||+++|++|++|++++||+||||++|.|....+                          .            
T Consensus       220 ~~-lLg~iie~vtG~~~~~~l~~~I~~PLGm~~t~~~~~d~--------------------------~------------  260 (392)
T 2dcf_A          220 TD-VLAWIVERVTGLRYVEALSTYLWAKLDADRDATITVDT--------------------------T------------  260 (392)
T ss_dssp             HH-HHHHHHHHHHCSCHHHHHHHHTGGGTTCSSCCEECBCT--------------------------T------------
T ss_pred             HH-HHHHHHHHHhCCCHHHHHHHHhhhhcCCCCcceeeeCC--------------------------C------------
Confidence            98 99999999999999999999999999999986642110                          0            


Q ss_pred             hhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccchh
Q 004807          464 SQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTK  543 (729)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~  543 (729)
                                       ....|+||++||++||+||+++++++|.+.+++.                           .+
T Consensus       261 -----------------g~~~~~ggl~sT~~Dlar~~~~ll~~G~~~g~~l---------------------------l~  296 (392)
T 2dcf_A          261 -----------------GFGFANGGVSCTARDLARVGRMMLDGGVAPGGRV---------------------------VS  296 (392)
T ss_dssp             -----------------CCBCTTTCEEECHHHHHHHHHHHHTTTEETTEEC---------------------------SC
T ss_pred             -----------------CCcccCceeecCHHHHHHHHHHHHcCCccCCEEe---------------------------CC
Confidence                             0125899999999999999999999988866521                           23


Q ss_pred             HHHHHHhhccCCCCcCCcccccccCCCccccccCCc-chhhhhcccccCCCCCCCcCCCCCCCCCCcccccccCCCcccc
Q 004807          544 KELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGD-TYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHD  622 (729)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  622 (729)
                      ++++++|........+                  .. +|..                                       
T Consensus       297 ~~~~~~~~~~~~~~~~------------------~~~~~~~---------------------------------------  319 (392)
T 2dcf_A          297 EDWVRRVLAGGSHEAM------------------TDKGFTN---------------------------------------  319 (392)
T ss_dssp             HHHHHHHHHCCCTTTC------------------CCHHHHH---------------------------------------
T ss_pred             HHHHHHHhccCCchhc------------------ccccccC---------------------------------------
Confidence            4555555211100000                  00 0000                                       


Q ss_pred             cccccCCCCCCCCCCCccccceecccCCCCCcceeccCCCCCceeeeecCCCeEEEEEeccCCCCcc-----hHHHHHHH
Q 004807          623 AFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGAT-----TGRIIHFV  697 (729)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~GlG~~~~~~~~~~~~~~gh~G~~G~~~~~~Pe~~~~vvvl~N~~~~~~~-----~~~~~~~v  697 (729)
                                 ..+...||+||++..   .+...|+|.|.+|+++|++|+.+++||+++|.....+.     ...+.++|
T Consensus       320 -----------~~~~~~YG~gw~~~~---~~~~~~~h~G~~G~~~~i~P~~~~~iv~lsn~~~~~~~~~~~~~~~~~~ai  385 (392)
T 2dcf_A          320 -----------TFPDGSYTRQWWCTG---NERGNVSGIGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDV  385 (392)
T ss_dssp             -----------HCTTCEEETTEEECC---CTTCCEEEEETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHH
T ss_pred             -----------CCCCCCcCcceEecC---CCCCeEEEEccCCeEEEEECCCCEEEEEeCCCCCCCCccccHHHHHHHHHH
Confidence                       012358999999853   33457999999999999999999999999999876542     34566777


Q ss_pred             HHhh
Q 004807          698 CSEL  701 (729)
Q Consensus       698 ~~~l  701 (729)
                      .++|
T Consensus       386 ~~~l  389 (392)
T 2dcf_A          386 SRAL  389 (392)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6665

>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}

Probab=100.00  E-value=1.6e-44  Score=401.04  Aligned_cols=296  Identities=14%  Similarity=0.128  Sum_probs=220.4

Q ss_pred             HHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          234 LRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       234 l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +++.+++    ....|  +.|+++|++|++++++        +++++|+|.++|+||+|||+++++|+|+|+|+|||||.
T Consensus       101 l~~~l~~----~~t~a--~lV~k~GkIv~E~Y~~--------~~~~dt~~~i~SvtKs~ta~~i~~lve~G~l~ldd~v~  166 (422)
T 4gb7_A          101 LKELLDD----NKTDA--FVVVHNGQLVYERYFN--------GYNESEPHGMASLAKVFTGAIIQSLAEENRIDLEKTAD  166 (422)
T ss_dssp             HHHHHHH----TTEEE--EEEEETTEEEEEEECT--------TCCTTSCEECGGGGHHHHHHHHHHHHHTTSSCTTSBHH
T ss_pred             HHHHHHh----cCCCE--EEEEECCEEEEEeCCC--------CCCCCCeeeeeeccHHHHHHHHHHHHHcCCcccCcchh
Confidence            4555554    33344  5889999999998874        56999999999999999999999999999999999999


Q ss_pred             hhccCCccCCCCCCcHHHHhcCCCCCCCCccCccc-----------------CCCcCCCCHHHHHHHHHhcCCCCCCCCc
Q 004807          314 NIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS-----------------ENPLLICDWDECLNRIALSAPETEPGQE  376 (729)
Q Consensus       314 ~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~PG~~  376 (729)
                      +|+|+++...+++|||||||+||||++........                 ..........++...+...++.++||++
T Consensus       167 ~ylPe~~~~~~~~iTir~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~  246 (422)
T 4gb7_A          167 TYIKELKNTPFGKATLQQLMDMQVSVEYPTHGYEHPALENQDAQLYLASNILPRDKNYDGPMKIYDMLQEAKETAPPGSV  246 (422)
T ss_dssp             HHCGGGTTSHHHHSBHHHHHTTCCEEECCCTTCCBTTBCHHHHHHHHHTTCSCCCTTCCSCSSHHHHHHTCEEEECTTSS
T ss_pred             ccCccccccccccchHhhhhhcccccccccccccCccccchhhhhhhhcccccccccccchHHHHHHHhhcccccCCCce
Confidence            99999988777899999999999999643221110                 0001112334566777788888999999


Q ss_pred             eecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCC
Q 004807          377 QLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPS  456 (729)
Q Consensus       377 ~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~  456 (729)
                      |.|||.+|. |||.|||++||++|.+|++++||+||||+++.+.....                                
T Consensus       247 ~~Ys~~~~~-lLg~iie~vtG~~~~~~l~e~i~~PLgm~~~~~~~~~~--------------------------------  293 (422)
T 4gb7_A          247 FSYNNGSTE-TLAWIIRTITGKSLAENVSERIWSQIGMEENAYYVTDE--------------------------------  293 (422)
T ss_dssp             CCCCHHHHH-HHHHHHHHHHSSCHHHHHHHHTTTTSCCSSCEEEEBCT--------------------------------
T ss_pred             eecccccHH-HHHHHHHHHHCCCHHHHhHHHHhcccCCccccccccCC--------------------------------
Confidence            999999998 99999999999999999999999999999886531100                                


Q ss_pred             CCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 004807          457 SFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETS  536 (729)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~~~~~~~~~l~~~~~~p~~~~~~~~  536 (729)
                                             .....++||+++|++||+||+++++++|.+.++|.                      
T Consensus       294 -----------------------~g~~~~~ggl~sta~D~arfg~l~l~~G~~~g~qi----------------------  328 (422)
T 4gb7_A          294 -----------------------TKIEQASAGLNATARDMARFGQLLLNNGEYNGKQI----------------------  328 (422)
T ss_dssp             -----------------------TSCBCTTTCEEECHHHHHHHHHHHHTTTEETTEES----------------------
T ss_pred             -----------------------CCCcccccceecCHHHHHHHHHHHHcCCccCCeEe----------------------
Confidence                                   01125789999999999999999999999988721                      


Q ss_pred             ccccchhHHHHHHhhccCCCCcCCcccccccCCCccccccCCcchhhhhcccccCCCCCCCcCCCCCCCCCCcccccccC
Q 004807          537 KKQKGTKKELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFN  616 (729)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (729)
                           .+++++++|.+.....                                                           
T Consensus       329 -----l~~~~v~~~~~~~~~~-----------------------------------------------------------  344 (422)
T 4gb7_A          329 -----LPSSITEDIKNVQEGE-----------------------------------------------------------  344 (422)
T ss_dssp             -----SCTHHHHHHHTCCTTS-----------------------------------------------------------
T ss_pred             -----cCHHHHHHHhccCCCC-----------------------------------------------------------
Confidence                 1122233331100000                                                           


Q ss_pred             CCcccccccccCCCCCCCCCCCccccceecccCCCCCcceeccCCCCCceeeeecCCCeEEEEEeccCCCCcchH----H
Q 004807          617 NPRIHDAFLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGATTG----R  692 (729)
Q Consensus       617 ~~~~~d~~~~~~~~~~~~~~~~~~GlG~~~~~~~~~~~~~~gh~G~~G~~~~~~Pe~~~~vvvl~N~~~~~~~~~----~  692 (729)
                                   .........+||+||++..   .+...|+|.|.+|+++|++|+++++||+++|...+.....    .
T Consensus       345 -------------~~~~~~~~~~YG~~ww~~~---~~~~~~~~~G~~Gq~i~vdP~~~lviV~lsn~~~~~~~~~~~~~~  408 (422)
T 4gb7_A          345 -------------LAIGPGASISYHNQWWIPH---NEQGAFEVLGSYGQTLYIDPKAKMVIVHFSSNATPSNEIHSVYSN  408 (422)
T ss_dssp             -------------SBSSTTCSCEEETTEEECC---CTTCCEEEEETTTEEEEEETTTTEEEEEEECCSSCCTTHHHHHHH
T ss_pred             -------------cccCCCCCCCCCcceeecC---CCCCeEEEEccCCeEEEEEecCCEEEEEeCCCCCCCchhhHHHHH
Confidence                         0000012347999999843   3445799999999999999999999999999876655433    3


Q ss_pred             HHHHHHHhh
Q 004807          693 IIHFVCSEL  701 (729)
Q Consensus       693 ~~~~v~~~l  701 (729)
                      +.+.|.+.|
T Consensus       409 ~~~~Ia~~L  417 (422)
T 4gb7_A          409 MYIDIAHHL  417 (422)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            344455555

>3i7j_A Beta-lactamase MB2281C; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 2.20A {Mycobacterium bovis}

Probab=100.00  E-value=3.6e-43  Score=367.94  Aligned_cols=258  Identities=22%  Similarity=0.286  Sum_probs=200.9

Q ss_pred             HhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCC
Q 004807          240 ELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEF  319 (729)
Q Consensus       240 ~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~  319 (729)
                      +.+++.++||++++|+++|+++++  +|          +++|+|+|+|+||+|||+++++|+++|+|+|||||.+     
T Consensus         5 ~~~~~~~vpg~s~~vv~~~~~v~~--~g----------~~~t~~~i~S~tK~~ta~~i~~lv~~G~l~ld~~v~~-----   67 (280)
T 3i7j_A            5 EVLGGWPVPAAAAAVIGPAGVLAT--HG----------DTARVFALASVTKPLVARAAQVAVEEGVVNLDTPAGP-----   67 (280)
T ss_dssp             GGGGGSSSSCEEEEEEETTEEEEE--ES----------CTTSCEECGGGHHHHHHHHHHHHHHHTSSCTTSBCSS-----
T ss_pred             HHHHhCCCCcEEEEEEECCEEEEe--ec----------CCCCeEechhhHHHHHHHHHHHHHHcCCCCCCCcCCC-----
Confidence            456779999999999999997764  55          8999999999999999999999999999999999985     


Q ss_pred             ccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCC
Q 004807          320 KSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKK  399 (729)
Q Consensus       320 ~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~  399 (729)
                           +.|||||||+||||++...                       .++.++||+.|.|||.+|. +||.|||+++|++
T Consensus        68 -----~~iTi~~LL~htsGl~~~~-----------------------~~~~~~pG~~~~Ysn~~~~-llg~iie~~tg~~  118 (280)
T 3i7j_A           68 -----PGSTVRHLLAHTSGLAMHS-----------------------DQALARPGTRRMYSNYGFT-VLAESVQRESGIE  118 (280)
T ss_dssp             -----TTCBHHHHHTTCSCBCSSS-----------------------SCBCSCTTTCCCCCHHHHH-HHHHHHHHHHTSC
T ss_pred             -----CCCcHHHHHhCCCCCCCCC-----------------------CCccCCCCCceeECcHHHH-HHHHHHHHHhCCC
Confidence                 6899999999999998631                       2578999999999999998 9999999999999


Q ss_pred             HHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhc
Q 004807          400 FQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNI  479 (729)
Q Consensus       400 ~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  479 (729)
                      |++|++++||+||||++|.|.+.                                                         
T Consensus       119 ~~~~~~~~i~~PLgm~~t~~~~~---------------------------------------------------------  141 (280)
T 3i7j_A          119 FGRYLTEAVCEPLGMVTTRLDGG---------------------------------------------------------  141 (280)
T ss_dssp             HHHHHHHHTHHHHTCTTCEECSG---------------------------------------------------------
T ss_pred             HHHHHHHHhhcccCCCCcccCCC---------------------------------------------------------
Confidence            99999999999999999966210                                                         


Q ss_pred             ccccCCCcceecCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccchhHHHHHHhhccCCCCcC
Q 004807          480 RRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKKELLAALKNKTNNSEH  559 (729)
Q Consensus       480 ~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (729)
                        ...+++|++||++||+||+++++++.+++++                                 ++++|.......  
T Consensus       142 --~~~~~~gl~sta~Dla~~~~~ll~~~ll~~~---------------------------------~~~~~~~~~~~~--  184 (280)
T 3i7j_A          142 --PAAAGFGATSTVADLAVFAGDLLRPSTVSAQ---------------------------------MHADATTVQFPG--  184 (280)
T ss_dssp             --GGGTTTCEEECHHHHHHHHHHHHSCCSSCHH---------------------------------HHHHHTSCSSTT--
T ss_pred             --CCCCCceeeECHHHHHHHHHHHhcCCCCCHH---------------------------------HHHHHhccccCC--
Confidence              0147789999999999999999996665544                                 344441000000  


Q ss_pred             CcccccccCCCccccccCCcchhhhhcccccCCCCCCCcCCCCCCCCCCcccccccCCCcccccccccCCCCCCCCCCCc
Q 004807          560 GHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDAFLGVGDYGDLALPNGR  639 (729)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  639 (729)
                                                                         .....          + | +  ....+..
T Consensus       185 ---------------------------------------------------~~~~~----------~-~-~--~~~~~~~  199 (280)
T 3i7j_A          185 ---------------------------------------------------LDGVL----------P-G-Y--GVQRPND  199 (280)
T ss_dssp             ---------------------------------------------------CCEEE----------T-T-T--EEESSCC
T ss_pred             ---------------------------------------------------ccccc----------c-c-c--ccCCCCc
Confidence                                                               00000          0 0 0  0011358


Q ss_pred             cccceecccCCC-------CCcceeccCCCCCceeeeecCCCeEEEEEeccCCCC---cchHHHHHHHHHhhC
Q 004807          640 FGLGFKRYNTRD-------GSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFG---ATTGRIIHFVCSELN  702 (729)
Q Consensus       640 ~GlG~~~~~~~~-------~~~~~~gh~G~~G~~~~~~Pe~~~~vvvl~N~~~~~---~~~~~~~~~v~~~l~  702 (729)
                      ||+||++.....       .+...|+|.|.+|+++|++|+.+++||+++|+....   .....+.+.|.+++.
T Consensus       200 yGlGw~~~~~~~~~~~~~~~~~~~~gh~G~~g~~~~~~P~~~~~vv~ltN~~~~~~~~~~~~~l~~~v~~~~~  272 (280)
T 3i7j_A          200 WGLGFEIRNSKSPHWTGECNSTRTFGHFGQSGGFIWVDPKADLALVVLTARDFGDWALDLWPAISDAVLAEYT  272 (280)
T ss_dssp             BCSSSEECTTCSSCSSCTTSCTTCEEEEETTTEEEEEETTTTEEEEEEESSCSSTTHHHHHHHHHHHHHHHHC
T ss_pred             eeeeEEeccCCCCcccccCCCCCEEEecCcCCeEEEEEeCCCEEEEEEECCCCCchhHHHHHHHHHHHHhhcC
Confidence            999999865321       245679999999999999999999999999987554   224555555555553

>2cc1_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, broad-spectrum; 2.13A {Mycobacterium fortuitum} SCOP: e.3.1.1

Probab=99.38  E-value=5.8e-12  Score=129.75  Aligned_cols=141  Identities=16%  Similarity=0.224  Sum_probs=93.2

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCH
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDW  357 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~  357 (729)
                      ++++.|++||++|.||++++++++++|+|+||++|.             +|.++++.| +|+....       +....+.
T Consensus        34 ~~~~~~~~aS~~K~~ta~~~l~~~~~G~l~ld~~v~-------------~~~~~~~~~-~~~~~~~-------~~~~~t~   92 (262)
T 2cc1_A           34 RPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVF-------------VDADALVPN-SPVTEAR-------AGAEMTL   92 (262)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEE-------------CCGGGCCSS-CHHHHTT-------TTSEEEH
T ss_pred             cCCCeeeehHHHHHHHHHHHHHHHHcCCCCCCceEE-------------cCHHHccCC-CcccccC-------CCCCcCH
Confidence            578899999999999999999999999999999987             445556665 3432211       1123566


Q ss_pred             HHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCC-HHHHHHHHhhhccCCCCccCCCCCCCccccccceecc
Q 004807          358 DECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKK-FQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTID  436 (729)
Q Consensus       358 ~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~-~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~  436 (729)
                      ++++.....            ||+ |..  ...++|+++|.. +.+     .++||||++|.+....+.    ..     
T Consensus        93 ~~ll~~~~~------------~S~-N~a--~~~l~~~vgG~~~~~~-----~~~~lG~~~t~~~~~~~~----~~-----  143 (262)
T 2cc1_A           93 AELCQAALQ------------RSD-NTA--ANLLLKTIGGPAAVTA-----FARSVGDERTRLDRWEVE----LN-----  143 (262)
T ss_dssp             HHHHHHHHH------------SCC-HHH--HHHHHHHHTHHHHHHH-----HHHHTTCCSCCCCSCTTG----GG-----
T ss_pred             HHHHHHHHH------------hCC-HHH--HHHHHHHhCChHHHHH-----HHHHcCCCceeecCcchh----hc-----
Confidence            776665432            332 222  356788888753 433     467999999855211000    00     


Q ss_pred             CcccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          437 TDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                                                  ....+..+.++|+.||++|+++++++..++++
T Consensus       144 --------------------------------------------~~~~g~~~~~~T~~dla~~~~~l~~~~~ls~~  175 (262)
T 2cc1_A          144 --------------------------------------------SAIPGDPRDTSTPAALAVGYRAILAGDALSPP  175 (262)
T ss_dssp             --------------------------------------------GCCTTCCTTEECHHHHHHHHHHHHHSSSSCHH
T ss_pred             --------------------------------------------ccCCCCccCccCHHHHHHHHHHHHcCCCCCHH
Confidence                                                        00012345689999999999999998776654

>1bsg_A Beta lactamase, penicillinase; hydrolase, antibiotic resistance; 1.85A {Streptomyces albus} SCOP: e.3.1.1

Probab=99.12  E-value=1.6e-09  Score=111.55  Aligned_cols=145  Identities=17%  Similarity=0.135  Sum_probs=96.2

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcC-CCCCCCCccCcccCCCcCCCC
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH-TSGLHNVSVDLSSENPLLICD  356 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtH-tSGl~~~~~~~~~~~~~~~~~  356 (729)
                      ++++.|.+||++|.+|++++++++++|+|+||++|.             ++-.+++.| .||+......     +....+
T Consensus        34 ~~~~~~~~aS~~K~~~a~~~l~~~~~G~l~l~~~v~-------------~~~~~~~~~~~s~~~~~~~~-----~~~~~t   95 (266)
T 1bsg_A           34 RADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRIL-------------YTQDDVEQADGAPETGKPQN-----LANGMT   95 (266)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHTCSSSTTTTCEEC-------------CCHHHHHHHTCCTTTTSHHH-----HHHCEE
T ss_pred             CCCCceecHHHHHHHHHHHHHHHHHcCCCCcCceEE-------------eCHHHccCCCCCchhhhccC-----CCCCcC
Confidence            577899999999999999999999999999999986             455666766 6776542200     011246


Q ss_pred             HHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceecc
Q 004807          357 WDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTID  436 (729)
Q Consensus       357 ~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~  436 (729)
                      .++++..+..            ||+ |.  ....++|++.|.   +-+++ .+++|||++|.+......    +      
T Consensus        96 l~~ll~~~i~------------~S~-N~--aa~~L~~~vgG~---~~~~~-~~~~lG~~~t~~~~~~~~----~------  146 (266)
T 1bsg_A           96 VEELCEVSIT------------ASD-NC--AANLMLRELGGP---AAVTR-FVRSLGDRVTRLDRWEPE----L------  146 (266)
T ss_dssp             HHHHHHHHHH------------SCC-HH--HHHHHHHHHTST---HHHHH-HHHHTTCSSCCCCSCTTG----G------
T ss_pred             HHHHHHHHHH------------hCc-HH--HHHHHHHHhcCH---HHHHH-HHHHcCCCceEecCCchh----h------
Confidence            6677666543            442 22  345678888874   23332 457899999855211000    0      


Q ss_pred             CcccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          437 TDDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                             .                                    ....+.++.++|+.||++|+++++++..+++.
T Consensus       147 -------~------------------------------------~~~~~~~~~~~Ta~dla~~~~~l~~~~~l~~~  179 (266)
T 1bsg_A          147 -------N------------------------------------SAEPGRVTDTTSPRAITRTYGRLVLGDALNPR  179 (266)
T ss_dssp             -------G------------------------------------CCCTTCCTTEECHHHHHHHHHHHHTSSSSCHH
T ss_pred             -------c------------------------------------cccCCCCCCccCHHHHHHHHHHHHcCCCCCHH
Confidence                   0                                    00013446689999999999999988766554

>1hzo_A Beta-lactamase; mixed alpha/beta, cephalosporinase, hydrolase; HET: MES; 1.75A {Proteus vulgaris} SCOP: e.3.1.1

Probab=99.11  E-value=2.9e-09  Score=110.18  Aligned_cols=171  Identities=15%  Similarity=0.097  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      .+++.|++++++.-    . -+++.|+  ..|+++   .+           +++..|.+||++|.+|++++++++++|++
T Consensus         5 ~l~~~l~~~~~~~~----~-~~~v~v~d~~tg~~~---~~-----------n~~~~~~~aS~~K~~ta~~~l~~v~~G~l   65 (271)
T 1hzo_A            5 TIEEQLNTLEKYSQ----G-RLGVALINTEDNSQI---TY-----------RGEERFAMASTSKVMAVAAVLKASEKQAG   65 (271)
T ss_dssp             HHHHHHHHHHHHHT----S-EEEEEEEETTTTEEE---EE-----------STTSCEECGGGGHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhcC----C-cEEEEEEECCCCCEE---EE-----------CCCCcchhHHHHHHHHHHHHHHHHhCCCC
Confidence            45566666666531    1 2233444  467654   22           67888999999999999999999999999


Q ss_pred             CccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecc-cCcHH
Q 004807          307 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYH-YLSFG  385 (729)
Q Consensus       307 ~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ys-n~~~~  385 (729)
                      +||++|.-             +-++++. .||+....       +....+.++++..+..            +| |.+  
T Consensus        66 ~ld~~v~~-------------~~~~~~~-~s~~~~~~-------~~~~~t~~~ll~~~i~------------~S~N~a--  110 (271)
T 1hzo_A           66 LLDKNITI-------------KKSDLVA-YSPITEKH-------LTTGMTLAELSAATLQ------------YSDNTA--  110 (271)
T ss_dssp             GGGCEECC-------------CGGGCCS-CCTTGGGC-------TTTCEEHHHHHHHHHH------------TCCHHH--
T ss_pred             CCCceEEe-------------CHHHccC-CChhhhhC-------CCCCcCHHHHHHHHHH------------cCCHHH--
Confidence            99999862             1122222 23433211       1113566777665543            23 333  


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhh
Q 004807          386 WLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQ  465 (729)
Q Consensus       386 ~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  465 (729)
                        ...++|++.|.   +-++ ..+++|||++|.+......                 +                      
T Consensus       111 --a~~L~~~~gG~---~~~~-~~~~~lG~~~t~~~~~~~~-----------------~----------------------  145 (271)
T 1hzo_A          111 --MNKILDYLGGP---AKVT-QFARSINDVTYRLDRKEPE-----------------L----------------------  145 (271)
T ss_dssp             --HHHHHHHHTSH---HHHH-HHHHHTTCSSCCCCCCTTG-----------------G----------------------
T ss_pred             --HHHHHHHhCCH---HHHH-HHHHHcCCCceeeCCCChh-----------------h----------------------
Confidence              44578888872   2333 3457899999855211000                 0                      


Q ss_pred             hhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          466 LAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                    .....+....++|+.||++++++++++..++..
T Consensus       146 --------------~~~~~~~~~~~~T~~dla~~~~~l~~~~~l~~~  178 (271)
T 1hzo_A          146 --------------NTAIHGDPRDTTSPIAMAKSLQALTLGDALGQS  178 (271)
T ss_dssp             --------------GCCCTTCCTTEECHHHHHHHHHHHHTSSSSCHH
T ss_pred             --------------ccCCCCCCCCccCHHHHHHHHHHHHcCCCCCHH
Confidence                          000012334589999999999999998776654

>2j9o_A TLL2115 protein; penicillin-binding protein, hydrolase, lactamase, thioestera DD-peptidase; 1.50A {Synechococcus elongatus} PDB: 2jbf_A* 2j7v_A 2j8y_A*

Probab=99.10  E-value=7.3e-10  Score=116.50  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIAN  314 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~  314 (729)
                      ++++.|.+||++|.||++++++++++|++++|++|..
T Consensus        52 ~~~~~~~paS~~K~~ta~a~l~~~e~G~l~l~~~v~~   88 (298)
T 2j9o_A           52 GGDQVFPAASTIKFPILVAFFKAVDEGRVTLQERLTM   88 (298)
T ss_dssp             BTTSCEECGGGGHHHHHHHHHHHHHTTSSCSSCEEEC
T ss_pred             CCCCeEecHhHHHHHHHHHHHHHHHcCCCCccceEEc
Confidence            4678999999999999999999999999999999874

>2qpn_A Beta-lactamase GES-1; APO-enzyme, plasmid, hydrolase; 1.10A {Klebsiella pneumoniae} PDB: 3nia_A* 3ni9_A*

Probab=99.00  E-value=5.2e-09  Score=109.26  Aligned_cols=67  Identities=15%  Similarity=0.084  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGK  305 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~  305 (729)
                      ..+++.+++++++.    +..+ ++.|.  ..|+++   .+           ++++.|..||++|.+|++++++++++|+
T Consensus        22 ~~l~~~l~~~~~~~----~~~~-~v~v~d~~tg~~l---~~-----------~~~~~~~~aS~~K~~ta~~~l~~~~~G~   82 (287)
T 2qpn_A           22 LTFKTDLEKLEREK----AAQI-GVAIVDPQGEIVA---GH-----------RMAQRFAMCSTFKFPLAALVFERIDSGT   82 (287)
T ss_dssp             HHHHHHHHHHHHHH----TCEE-EEEEECTTCCEEE---EE-----------STTSCEECGGGGHHHHHHHHHHHHHHTS
T ss_pred             hhHHHHHHHHHHhc----CCeE-EEEEEECCCCCEE---EE-----------CCCCceecHHHHHHHHHHHHHHHHHcCC
Confidence            45566666666543    2222 23343  466654   22           5678999999999999999999999999


Q ss_pred             CCccCchh
Q 004807          306 LKLEENIA  313 (729)
Q Consensus       306 l~ldd~v~  313 (729)
                      ++||++|.
T Consensus        83 l~ld~~v~   90 (287)
T 2qpn_A           83 ERGDRKLS   90 (287)
T ss_dssp             SCTTCEEE
T ss_pred             CCCCceEE
Confidence            99999986

>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 4dds_A* 4ddy_A* 4de0_A* 4de1_A* 4de2_A* 4de3_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* ...

Probab=98.99  E-value=1.8e-08  Score=103.51  Aligned_cols=173  Identities=16%  Similarity=0.076  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGK  305 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~  305 (729)
                      ..+++.+++++++.    ...+ ++.|+  +.|+++   .+           ++++.|.+||++|.||++++++++++|+
T Consensus         3 ~~l~~~l~~~~~~~----~~~~-~~~v~d~~tG~~l---~~-----------~~~~~~~~aS~~K~~ta~~~l~~~~~g~   63 (263)
T 2p74_A            3 SAVQQKLAALEKSS----GGRL-GVALIDTADNTQV---LY-----------RGDERFPMCSTSKVMAAAAVLKQSETQK   63 (263)
T ss_dssp             CHHHHHHHHHHHHH----TSEE-EEEEEETTTTEEE---EE-----------STTSCEECGGGGHHHHHHHHHHHHTTCT
T ss_pred             hhHHHHHHHHHHhc----CCcE-EEEEEECCCCCeE---ee-----------CCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence            34556666666653    2222 23343  467765   22           4678899999999999999999999999


Q ss_pred             CCccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHH
Q 004807          306 LKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFG  385 (729)
Q Consensus       306 l~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~  385 (729)
                      +++|++|.-.-             ++++.| +++.....       ....+.++++..+..            +|+ |. 
T Consensus        64 ~~l~~~v~~~~-------------~~~~~~-~~~~~~~~-------~~~~tl~~ll~~~~~------------~S~-N~-  108 (263)
T 2p74_A           64 QLLNQPVEIKP-------------ADLVNY-NPIAEKHV-------NGTMTLAELSAAALQ------------YSD-NT-  108 (263)
T ss_dssp             TGGGCEEECCG-------------GGCCSC-CTTGGGGT-------TSEEEHHHHHHHHHH------------HCC-HH-
T ss_pred             CCcCCeEEeCH-------------HHhccC-ChhhhhCC-------CCCccHHHHHHHHHH------------hCc-HH-
Confidence            99999986321             122222 22221110       113466676665432            332 22 


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhh
Q 004807          386 WLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQ  465 (729)
Q Consensus       386 ~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  465 (729)
                       ....+++++.|.   +-+. ..+++|||++|.+... ..             .   ..                     
T Consensus       109 -a~~~L~~~~gG~---~~~~-~~~~~lG~~~t~~~~~-~~-------------~---~~---------------------  145 (263)
T 2p74_A          109 -AMNKLIAQLGGP---GGVT-AFARAIGDETFRLDRT-EP-------------T---LN---------------------  145 (263)
T ss_dssp             -HHHHHHHHTTSH---HHHH-HHHHHTTCSSCCCCCC-TT-------------G---GG---------------------
T ss_pred             -HHHHHHHHhCCH---HHHH-HHHHHcCCCceeecCC-ch-------------h---hc---------------------
Confidence             234567777762   2233 3456899998855211 00             0   00                     


Q ss_pred             hhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          466 LAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                     ....+..+..+|+.||+++++++.++..+++.
T Consensus       146 ---------------~~~~~~~~~~~T~~dla~~~~~l~~~~~l~~~  177 (263)
T 2p74_A          146 ---------------TAIPGDPRDTTTPRAMAQTLRQLTLGHALGET  177 (263)
T ss_dssp             ---------------CCCTTCCTTEECHHHHHHHHHHHHTSSSSCHH
T ss_pred             ---------------ccCCCCCcCccCHHHHHHHHHHHHcCCCCCHH
Confidence                           00013345689999999999999998766554

>1e25_A Extended-spectrum beta-lactamase PER-1; hydrolase, antibiotic resistance, class A cephalosporinase; 1.9A {Pseudomonas aeruginosa} SCOP: e.3.1.1

Probab=98.97  E-value=9e-09  Score=107.05  Aligned_cols=38  Identities=34%  Similarity=0.360  Sum_probs=35.1

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANI  315 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~y  315 (729)
                      ++++.|.+||++|.+|++++++++++|+|+||++|.-.
T Consensus        36 ~~~~~~~~aS~~K~~ta~~~l~~~~~G~l~ld~~v~~~   73 (282)
T 1e25_A           36 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVN   73 (282)
T ss_dssp             STTCCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEEEE
T ss_pred             CCCCceecHHHHHHHHHHHHHHHHHcCCCCCCCeEEeC
Confidence            67889999999999999999999999999999998743

>1g6a_A Beta-lactamase PSE-4; class A beta-lactamase, carbenicillinase, R234K mutant, hydrolase; 1.75A {Pseudomonas aeruginosa} SCOP: e.3.1.1 PDB: 1g68_A

Probab=98.97  E-value=1.9e-08  Score=103.96  Aligned_cols=68  Identities=22%  Similarity=0.311  Sum_probs=49.7

Q ss_pred             chHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCC
Q 004807          227 HSDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNG  304 (729)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G  304 (729)
                      ...+.+.|++++++.    +..+ ++.|+  ..|+++   .+           ++++.|.+||++|.+|++++++++++|
T Consensus         5 ~~~l~~~l~~~~~~~----~~~~-~~~v~d~~tg~~~---~~-----------~~~~~~~~aS~~K~~~a~~~l~~~~~G   65 (271)
T 1g6a_A            5 FQQVEQDVKAIEVSL----SARI-GVSVLDTQNGEYW---DY-----------NGNQRFPLTSTFKTIACAKLLYDAEQG   65 (271)
T ss_dssp             THHHHHHHHHHHHHT----TCEE-EEEEEETTTTEEE---EE-----------STTSCEECGGGGHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc----CCeE-EEEEEECCCCCEE---EE-----------CCCCccccHHHHHHHHHHHHHHHHHCC
Confidence            355666666665543    3222 33444  467654   22           567889999999999999999999999


Q ss_pred             CCCccCchh
Q 004807          305 KLKLEENIA  313 (729)
Q Consensus       305 ~l~ldd~v~  313 (729)
                      +++||++|.
T Consensus        66 ~l~l~~~v~   74 (271)
T 1g6a_A           66 KVNPNSTVE   74 (271)
T ss_dssp             SCCTTCEEE
T ss_pred             CCCccceEE
Confidence            999999986

>1o7e_A L2 beta lactamase; hydrolase, class A; 1.51A {Stenotrophomonas maltophilia} SCOP: e.3.1.1 PDB: 1n4o_A

Probab=98.96  E-value=8.7e-09  Score=106.88  Aligned_cols=142  Identities=11%  Similarity=0.065  Sum_probs=87.9

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCH
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDW  357 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~  357 (729)
                      +++..|..||++|.+|++++++++++|+++||++|.-.-             .+++.+ +|+....       +....+.
T Consensus        47 n~~~~~~~aS~~K~~ta~~~l~~~~~G~l~l~~~v~~~~-------------~~~~~~-~~~~~~~-------~~~~~tl  105 (276)
T 1o7e_A           47 RQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGE-------------ADLLSH-APVTRRH-------AGKDMTV  105 (276)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEEECG-------------GGCCSS-CTTGGGG-------TTEEEEH
T ss_pred             CCCCccccHHHHHHHHHHHHHHHHHCCCCCCCceEEeCH-------------HHhcCC-CcccccC-------CCCCccH
Confidence            567889999999999999999999999999999986321             112222 2222111       0112456


Q ss_pred             HHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccC
Q 004807          358 DECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDT  437 (729)
Q Consensus       358 ~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~  437 (729)
                      ++++.....            ||+ |.  ....+++++.|.   +-+ .+.+++|||++|.+......            
T Consensus       106 ~~ll~~~i~------------~S~-N~--a~~~L~~~lgG~---~~~-~~~~~~lG~~~t~~~~~~~~------------  154 (276)
T 1o7e_A          106 RDLCRATII------------TSD-NT--AANLLFGVVGGP---PAV-TAFLRASGDTVSRSDRLEPE------------  154 (276)
T ss_dssp             HHHHHHHHH------------SCC-HH--HHHHHHHHHTHH---HHH-HHHHHHHTCSSCCCCCCTTG------------
T ss_pred             HHHHHHHHH------------cCC-HH--HHHHHHHHhCCH---HHH-HHHHHHcCCCcccccCCchh------------
Confidence            676665443            332 22  234567777653   123 23456899998855210000            


Q ss_pred             cccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          438 DDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       438 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                           +                                    .....+.++..+|+.||++++++++++..++++
T Consensus       155 -----~------------------------------------~~~~~~~~~~~~T~~d~a~~~~~l~~~~~l~~~  188 (276)
T 1o7e_A          155 -----L------------------------------------NSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPA  188 (276)
T ss_dssp             -----G------------------------------------GCCBTTBCTTEECHHHHHHHHHHHHTSSSSCHH
T ss_pred             -----h------------------------------------ccccCCCCCCcCCHHHHHHHHHHHHhCCCCCHH
Confidence                 0                                    000023456789999999999999998766554

>1bue_A Protein (imipenem-hydrolysing beta-lactamase); hydrolase, antibiotic resistance, class A carbapenemase; 1.64A {Enterobacter cloacae} SCOP: e.3.1.1 PDB: 1bul_A* 1dy6_A

Probab=98.93  E-value=9.3e-09  Score=105.95  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCC
Q 004807          230 VEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK  307 (729)
Q Consensus       230 ~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~  307 (729)
                      +++.+++++++.    ... .++.|+  ..|+++   .+           ++++.|.+||++|.+|++++++++++|+++
T Consensus         4 ~~~~l~~~~~~~----~~~-~~v~v~d~~tg~~~---~~-----------~~~~~~~~aS~~K~~~a~~~l~~~~~g~l~   64 (265)
T 1bue_A            4 GIDEIKNLETDF----NGR-IGVYALDTGSGKSF---SY-----------RANERFPLCSSFKGFLAAAVLKGSQDNRLN   64 (265)
T ss_dssp             THHHHHHHHHHH----TSE-EEEEEEETTTCCEE---EE-----------STTSCEECGGGGHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHhc----CCe-EEEEEEECCCCCEE---EE-----------CCCCccccHHHHHHHHHHHHHHHHhcCCCC
Confidence            445566666554    222 233444  467764   22           567889999999999999999999999999


Q ss_pred             ccCchhh
Q 004807          308 LEENIAN  314 (729)
Q Consensus       308 ldd~v~~  314 (729)
                      ||++|.-
T Consensus        65 ld~~v~~   71 (265)
T 1bue_A           65 LNQIVNY   71 (265)
T ss_dssp             TTCEECC
T ss_pred             cCceEEe
Confidence            9999973

>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...

Probab=98.92  E-value=1e-07  Score=98.02  Aligned_cols=173  Identities=15%  Similarity=0.107  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      .+.+.|++++++.    ...+ ++.|+  ..|++++.  +           ++++.|..||++|.+|++++++++++|++
T Consensus         3 ~l~~~l~~~~~~~----~~~~-~~~v~d~~tG~~l~~--~-----------~~~~~~~~aS~~K~~ta~~~l~~~~~G~~   64 (263)
T 1m40_A            3 ETLVKVKDAEDQL----GARV-GYIELDLNSGKILES--F-----------RPEERFPMMSTFKVLLCGAVLSRVDAGQE   64 (263)
T ss_dssp             HHHHHHHHHHHHH----TSEE-EEEEEETTTCCEEEE--E-----------STTSCEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHhc----CCeE-EEEEEECCCCCEeee--e-----------CCCCccccHHHHHHHHHHHHHHHHhCCCC
Confidence            4555666665543    2222 23344  47887652  2           56788999999999999999999999999


Q ss_pred             CccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHH
Q 004807          307 KLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGW  386 (729)
Q Consensus       307 ~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~  386 (729)
                      ++|++|.-.-             .++..+ +++....       .....+.++++.....            +|+ |.  
T Consensus        65 ~l~~~v~~~~-------------~~~~~~-~~~~~~~-------~~~~~t~~~ll~~~~~------------~S~-N~--  108 (263)
T 1m40_A           65 QLGRRIHYSQ-------------NDLVEY-SPVTEKH-------LTDGMTVRELCSAAIT------------MSD-NT--  108 (263)
T ss_dssp             CTTCEECCCG-------------GGCCSC-CTTGGGC-------TTTCEEHHHHHHHHHH------------SCC-HH--
T ss_pred             CCCceEEeCH-------------HHhcCC-Ccchhhc-------CCCCccHHHHHHHHHH------------hCc-HH--
Confidence            9999986211             111122 2222111       0113466676665443            232 22  


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhh
Q 004807          387 LCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQL  466 (729)
Q Consensus       387 lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  466 (729)
                      ....+++++.|..   -+ ...++++||.+|.+.. +...                .                       
T Consensus       109 a~~~L~~~~gG~~---~~-~~~~~~lG~~~t~~~~-~~~~----------------~-----------------------  144 (263)
T 1m40_A          109 AANLLLTTIGGPK---EL-TAFLHNMGDHVTRLDR-WEPE----------------L-----------------------  144 (263)
T ss_dssp             HHHHHHHHHTSHH---HH-HHHHHHTTCSSCCCCC-CTTG----------------G-----------------------
T ss_pred             HHHHHHHHhCCHH---HH-HHHHHHcCCCceecCC-Cchh----------------h-----------------------
Confidence            2455777777631   23 2345779999875421 1000                0                       


Q ss_pred             hccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          467 AAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                   .....+.++..+|+.||+++++++.+++.++++
T Consensus       145 -------------~~~~~g~~~~~~T~~d~a~~~~~l~~~~~l~~~  177 (263)
T 1m40_A          145 -------------NEAIPNDERDTTTPAAMATTLRKLLTGELLTLA  177 (263)
T ss_dssp             -------------GCCCTTCCTTEECHHHHHHHHHHHHHSTTSCHH
T ss_pred             -------------ccccCCCCcCccCHHHHHHHHHHHHcCCCCCHH
Confidence                         000123456789999999999999998876554

>3c5a_A Class A carbapenemase KPC-2; beta-lactamase, C-terminal deleted mutant, plasmid, hydrolase; HET: CIT; 1.23A {Escherichia coli} PDB: 3rxw_A* 3rxx_A* 2ods_A 2ov5_A* 3e2k_A 3e2l_A*

Probab=98.89  E-value=1.2e-08  Score=105.07  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=34.0

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ++++.|.+||++|.||++++++++++|+++||++|.
T Consensus        35 ~~~~~~~~aS~~K~~~a~~~l~~~~~G~l~l~~~v~   70 (264)
T 3c5a_A           35 RAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIR   70 (264)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHHHHSTTSTTCEEC
T ss_pred             CCCCceecHHHHHHHHHHHHHHHHHCCCCCCCcEEE
Confidence            567899999999999999999999999999999986

>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 3mke_A* 3mkf_A* 3mxr_A* 3mxs_A* 3n4i_A 2a3u_A* 3opr_A* 3opl_A* 3oph_A* 3opp_A* ...

Probab=98.81  E-value=8.1e-08  Score=98.84  Aligned_cols=68  Identities=21%  Similarity=0.207  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      ++.+.|++++++.    ...+ ++.|+  ..|++++.  +           +++..|..||++|.+|++++++++++|++
T Consensus         3 ~l~~~l~~~~~~~----~~~~-~v~v~d~~tg~~l~~--~-----------~~~~~~~~aS~~K~~~a~~~l~~~~~G~l   64 (265)
T 1n9b_A            3 QPLEQIKLSESQL----SGRV-GMIEMDLASGRTLTA--W-----------RADERFPMMSTFKVVLCGAVLARVDAGDE   64 (265)
T ss_dssp             CHHHHHHHHHHHH----TSEE-EEEEEETTTCCEEEE--E-----------STTSCEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHhc----CCcE-EEEEEECCCCcEeee--e-----------CCCCeeecHHHHHHHHHHHHHHHHHCCCC
Confidence            3555666666553    2222 33444  46777642  2           56788999999999999999999999999


Q ss_pred             CccCchhh
Q 004807          307 KLEENIAN  314 (729)
Q Consensus       307 ~ldd~v~~  314 (729)
                      +||++|.-
T Consensus        65 ~l~~~v~~   72 (265)
T 1n9b_A           65 QLERKIHY   72 (265)
T ss_dssp             CTTCEECC
T ss_pred             CCCCeEEe
Confidence            99999873

>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 2x71_A* 3b3x_A* 1i2s_A* 1i2w_A* 2y91_A* 2blm_A 4blm_A 3sh9_A* 3sh7_A* 3sh8_A* 3ly3_A 3kgo_A* 3ly4_A* 3kgm_A* 3kgn_A* 3m2j_A* 3m2k_A* 3soi_A* 1mbl_A

Probab=98.78  E-value=3.5e-08  Score=101.57  Aligned_cols=100  Identities=18%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCH
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDW  357 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~  357 (729)
                      +++..|..||++|.+|++++++++++|  +||++|.             ++.++++.| +|+.....       ....+.
T Consensus        35 ~~~~~~~~aS~~K~~~a~~~l~~~~~g--~l~~~v~-------------~~~~~~~~~-~~~~~~~~-------~~~~t~   91 (265)
T 2wk0_A           35 RPDERFAFASTIKALTVGVLLQQKSIE--DLNQRIT-------------YTRDDLVNY-NPITEKHV-------DTGMTL   91 (265)
T ss_dssp             STTCEEECGGGHHHHHHHHHHHHCCTG--GGGCEEC-------------CCTTTCCSC-CTTGGGCT-------TTCEEH
T ss_pred             CCCCceecHHHHHHHHHHHHHHHHhCC--CCCCeEE-------------eCHHHccCC-CcccccCC-------CCCccH
Confidence            667899999999999999999999999  9999876             122233344 44432211       123566


Q ss_pred             HHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccC
Q 004807          358 DECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELY  419 (729)
Q Consensus       358 ~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~  419 (729)
                      ++++..+..            ||+ |.  ....+++++.|   .+-++ ..+++|||++|.+
T Consensus        92 ~~ll~~~i~------------~S~-N~--aa~~L~~~lgG---~~~~~-~~~~~lG~~~t~~  134 (265)
T 2wk0_A           92 KELADASLR------------YSD-NT--AQNLILKQIGG---PESLK-KELRKIGDEVTNP  134 (265)
T ss_dssp             HHHHHHHHH------------HCC-HH--HHHHHHHHTTH---HHHHH-HHHHHTTCCSCCC
T ss_pred             HHHHHHHHH------------hCC-HH--HHHHHHHHhCC---HHHHH-HHHHHcCCCceee
Confidence            777665433            442 22  24567777776   23343 3457899999855

>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc target, SAV0642, PSI, protein structure initiative; 2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1

Probab=98.67  E-value=9.1e-08  Score=102.74  Aligned_cols=119  Identities=14%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcC
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH  335 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtH  335 (729)
                      ..|++++++             ++|..|.+||+||.+|++++++.+++|+|+||++|.  +           +=.  ..+
T Consensus        43 ~tG~vL~~~-------------n~d~~~~~AS~tKlmTa~~vl~~i~~G~l~Ld~~V~--v-----------s~~--~~~   94 (369)
T 1tvf_A           43 QTGQLLYQY-------------NIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVT--M-----------TNK--EYI   94 (369)
T ss_dssp             TTSBEEEEE-------------STTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEE--C-----------CHH--HHH
T ss_pred             CCCCEEEEE-------------CCCCeEccHHHHHHHHHHHHHHHHhcCCCCCCCeEE--E-----------CHH--HHh
Confidence            678877652             678899999999999999999999999999999885  1           111  112


Q ss_pred             CCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhC--CCHHHHHHHHhhhccC
Q 004807          336 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASG--KKFQEILEEGIIQPLS  413 (729)
Q Consensus       336 tSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG--~~~~~~l~e~If~PLG  413 (729)
                      .+|.+....-  ...+....+.++++..+.-            +|. |.  ..-.++|.+.|  ..|.+.|+++ +++||
T Consensus        95 ~~g~~~~S~~--~l~~g~~~tv~dLl~~~ii------------~S~-Nd--Aa~aLae~vgGs~~~Fv~~MN~~-a~~LG  156 (369)
T 1tvf_A           95 MSTLPELSNT--KLYPGQVWTIADLLQITVS------------NSS-NA--AALILAKKVSKNTSDFVDLMNNK-AKAIG  156 (369)
T ss_dssp             HTTCTTSCCC--CCCTTCEEEHHHHHHHHHH------------SCC-HH--HHHHHHHHHSSSHHHHHHHHHHH-HHHTT
T ss_pred             hcCCCCccee--eccCCCeEeHHHHHHHHHh------------hCc-HH--HHHHHHHHhCCCHHHHHHHHHHH-HHHhC
Confidence            2333211100  0111123566777776542            221 22  23445677777  4577888887 89999


Q ss_pred             CCCccCC
Q 004807          414 IDGELYI  420 (729)
Q Consensus       414 m~~T~~~  420 (729)
                      |++|.|.
T Consensus       157 m~~T~f~  163 (369)
T 1tvf_A          157 MKNTHFV  163 (369)
T ss_dssp             CTTCBCS
T ss_pred             Ccccccc
Confidence            9999773

>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}

Probab=98.67  E-value=2e-07  Score=98.27  Aligned_cols=100  Identities=17%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCH
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDW  357 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~  357 (729)
                      +++..|..||++|.+|++++++.+++|  +||++|.-             +-.++..| +|+....       +....+.
T Consensus        77 n~~~~~~~aS~~K~~ta~~~l~~~~~G--~ld~~v~~-------------~~~~~~~~-s~~~~~~-------~~~~~tl  133 (307)
T 1w7f_A           77 RPDERFAFASTIKALTVGVLLQQKSIE--DLNQRITY-------------TRDDLVNY-NPITEKH-------VDTGMTL  133 (307)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHCCTG--GGGCEECC-------------CTTTCCSC-CTTGGGC-------TTTCEEH
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhcCC--CCCceEEc-------------CHHHccCC-CcccccC-------CCCCcCH
Confidence            567889999999999999999999999  99988761             11122233 2332211       1123566


Q ss_pred             HHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccC
Q 004807          358 DECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELY  419 (729)
Q Consensus       358 ~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~  419 (729)
                      ++++.....            +|+ |.  ....++|++.|.   +-++ +.+++|||++|.+
T Consensus       134 ~~ll~~~i~------------~S~-N~--aa~~L~~~lgG~---~~~~-~~~~~lG~~~t~~  176 (307)
T 1w7f_A          134 KELADASLR------------YSD-NT--AQNLILKQIGGP---ESLK-KELRKIGDEVTNP  176 (307)
T ss_dssp             HHHHHHHHH------------HCC-HH--HHHHHHHHTTHH---HHHH-HHHHHTTCCSCCC
T ss_pred             HHHHHHHHH------------cCC-HH--HHHHHHHHhcCH---HHHH-HHHHHcCCCceee
Confidence            676665432            332 22  356777887763   3443 3567899999855

>3a3j_A PBP5; penicillin binding protein 5, DACA, hydrolase; 2.15A {Haemophilus influenzae}

Probab=98.63  E-value=1e-07  Score=101.59  Aligned_cols=117  Identities=15%  Similarity=0.109  Sum_probs=75.7

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcC
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH  335 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtH  335 (729)
                      ..|++++++             +.|..|.+||+||.+|++++++.+++|+|+||++|.-.  +-      ....    . 
T Consensus        18 ~tG~vl~~~-------------n~d~~~~~AS~tKlmTa~~vl~~i~~G~l~ld~~v~vs--~~------a~~~----~-   71 (344)
T 3a3j_A           18 NSGAILTAL-------------NPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMVTIG--ES------AWGR----N-   71 (344)
T ss_dssp             TTCCEEEEE-------------STTSCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEECC--TT------TCGG----G-
T ss_pred             CCCcEEEEE-------------CCCCeEccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEC--HH------HHhc----c-
Confidence            578887652             67888999999999999999999999999999998621  11      0110    0 


Q ss_pred             CCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhC--CCHHHHHHHHhhhccC
Q 004807          336 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASG--KKFQEILEEGIIQPLS  413 (729)
Q Consensus       336 tSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG--~~~~~~l~e~If~PLG  413 (729)
                      .+|-...     ...+....+.++++..+.-            +|. |-  ..-.++|.+.|  ..|.+.|.++ .+.||
T Consensus        72 ~~~~s~~-----~l~~g~~~tv~dLl~~~l~------------~S~-Nd--Aa~aLae~vgGs~~~Fv~~Mn~~-a~~LG  130 (344)
T 3a3j_A           72 FPDSSKM-----FLDLNTQVSVADLNRGVIV------------VSG-ND--ATVALAEHISGNVPNFVETMNKY-VQQFG  130 (344)
T ss_dssp             CTTSCCC-----CCCTTCEEEHHHHHHHHHH------------HCC-HH--HHHHHHHHHHSSHHHHHHHHHHH-HHHTT
T ss_pred             cCCCcee-----cccCCCEEEHHHHHHHHHH------------hch-HH--HHHHHHHHhcCCHHHHHHHHHHH-HHHcC
Confidence            0111100     0011123566777766542            332 21  12336777777  4688889887 68999


Q ss_pred             CCCccC
Q 004807          414 IDGELY  419 (729)
Q Consensus       414 m~~T~~  419 (729)
                      |++|.|
T Consensus       131 ~~~T~f  136 (344)
T 3a3j_A          131 LKNTNF  136 (344)
T ss_dssp             CSSCBC
T ss_pred             CCceEE
Confidence            999976

>3p09_A Beta-lactamase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich, cytosol; HET: MSE; 1.90A {Francisella tularensis subsp}

Probab=98.60  E-value=1.1e-06  Score=91.45  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=34.0

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ++|..|..+|++|.+++.+++..+++|+++||++|.
T Consensus        55 n~d~~~~~AS~~Kl~~~~~vl~~v~~G~l~ld~~v~   90 (290)
T 3p09_A           55 NESYHFPICSVFKFLLVGAILDYDMHNQGFLDKKIP   90 (290)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEEE
T ss_pred             CCCCeEecHHHHHHHHHHHHHHHhhcCCCCCcceEE
Confidence            678889999999999999999999999999999875

>4ewf_A Beta-lactamase; ABA-sandwich, structural genomics, midwest center for struct genomics (MCSG), PSI-biology, cytoplasmic, hydrolase; 2.00A {Sphaerobacter thermophilus}

Probab=98.56  E-value=2.4e-06  Score=88.46  Aligned_cols=36  Identities=25%  Similarity=0.161  Sum_probs=34.0

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|..|..+|++|.+++++++..+++|+++||++|.
T Consensus        43 n~d~~~~~AS~~Kl~~~~~~l~~v~~G~l~l~~~v~   78 (275)
T 4ewf_A           43 NGDRRFRAASTVKIPLMIAVYRAVDAGERALTDRIV   78 (275)
T ss_dssp             STTCCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEE
T ss_pred             CCCCeEccHHHHHHHHHHHHHHHHhcCCCCchhhcc
Confidence            678889999999999999999999999999999985

>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance, hydrolase; 1.60A {Escherichia coli}

Probab=98.56  E-value=1.4e-06  Score=90.92  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|..|..||++|.+++++++..+++|+++||++|.
T Consensus        60 n~d~~~~~AS~~Kl~~a~~~l~~v~~G~l~ld~~v~   95 (294)
T 3dw0_A           60 RAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIR   95 (294)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHHTTSTTCTTCEEC
T ss_pred             CCCCcccchHHHHHHHHHHHHHHHhcCCCCCcceEe
Confidence            678889999999999999999999999999999984

>2wuq_A BLAB, beta-lactamase regulatory protein BLAB; class A beta-lactamase fold, transcription regulation, beta-lactamase induction, transcription; 1.80A {Streptomyces cacaoi}

Probab=98.51  E-value=1.8e-06  Score=91.16  Aligned_cols=37  Identities=22%  Similarity=0.141  Sum_probs=34.1

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIAN  314 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~  314 (729)
                      +++..|..||++|+||+++++..+++|++++|++|..
T Consensus        38 ~~~~~~~pgSt~K~~~a~aal~~~~~G~~~~~~~v~~   74 (318)
T 2wuq_A           38 DPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEV   74 (318)
T ss_dssp             STTCCEECGGGGHHHHHHHHHHHHHTTSSCTTCEEEE
T ss_pred             CCCCccccHHHHHHHHHHHHHHHHhCCCCCCCCeEEe
Confidence            4577899999999999999999999999999999864

>4hes_A Beta-lactamase class A-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, COG COG2367, H; HET: MSE; 1.90A {Veillonella parvula}

Probab=98.48  E-value=1.2e-06  Score=90.54  Aligned_cols=72  Identities=17%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecce---eEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGE---VIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNG  304 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~---~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G  304 (729)
                      ..++.++++.++++... +-.++.+..+.+++   +++.  .           ++|+.|..||++|.+++++++..+++|
T Consensus        11 ~~l~~~l~~~~~~~~~~-~~~~~~v~~l~d~~~~~vl~~--~-----------n~d~~~~~AS~~Kl~~~~~~~~~v~~G   76 (275)
T 4hes_A           11 KSLEHQLDTVIKELAPA-GNISYAVLQFDDEEEPTLIAA--R-----------GENTVHSSASLIKVLIMEYVFHLARTE   76 (275)
T ss_dssp             HHHHHHHHHHHHHHCTT-SEEEEEEEEECTTSCCEEEEE--E-----------STTCCEECGGGGHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhcccC-CceEEEEEEEEcCCCceEEEE--E-----------CCCceecchHHHHHHHHHHHHHHHHcC
Confidence            34556667777665442 22344444444554   3332  2           788999999999999999999999999


Q ss_pred             CCCccCchh
Q 004807          305 KLKLEENIA  313 (729)
Q Consensus       305 ~l~ldd~v~  313 (729)
                      +|+||++|.
T Consensus        77 ~l~l~~~v~   85 (275)
T 4hes_A           77 QLDINDTVP   85 (275)
T ss_dssp             SSCTTCEEE
T ss_pred             CCCccceEE
Confidence            999999885

>4euz_A Carbapenem-hydrolizing beta-lactamase SFC-1; carbapenemase, hydrolase, antibiotic resistance, beta-lactam complex; HET: HAR MEM; 1.08A {Serratia fonticola} PDB: 4eqi_A 4ev4_A*

Probab=98.47  E-value=3.8e-06  Score=87.18  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=33.9

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|..|.++|++|.+++.+++..+++|+++||++|.
T Consensus        39 n~d~~~~~AS~~Kl~~~~~vl~~v~~G~l~ld~~v~   74 (283)
T 4euz_A           39 RANERFPLCASFKGFLAAAVLSKSQQQEGLLNQRIR   74 (283)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHHHHSTTGGGCEEC
T ss_pred             CCCCeEEcHHHHHHHHHHHHHHHhhCCCCCCCcEEE
Confidence            678899999999999999999999999999999884

>1ghp_A Beta-lactamase, penicillinase; hydrolase, antibiotic resistance, beta-lactam hydrolysis, benzylpenicillin, cephaloridine; HET: PNM; 1.76A {Staphylococcus aureus} SCOP: e.3.1.1 PDB: 1ghi_A* 1ghm_A* 1kgf_A 1kge_A 1ome_A 1kgg_A 1dja_A 3blm_A 1blh_A* 1blc_A 1djc_A 1djb_A 1blp_A 1pio_A

Probab=98.46  E-value=2e-06  Score=88.04  Aligned_cols=140  Identities=14%  Similarity=0.081  Sum_probs=87.2

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCH
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDW  357 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~  357 (729)
                      +++..|..||++|.+|++++++.+++|+  ||++|.-             +-.+++.+ +|+....       +....+.
T Consensus        31 ~~~~~~~~aS~~K~~~a~~~l~~~~~g~--ld~~v~~-------------~~~~~~~~-s~i~~~~-------~~~~~tl   87 (258)
T 1ghp_A           31 NSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHI-------------NKDDIVAY-SPILEKY-------VGKDITL   87 (258)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHSCGGG--GGCEEEE-------------CGGGCCSS-CTTGGGG-------TTEEEEH
T ss_pred             CCCCcccchHHHHHHHHHHHHHHhccCC--CCCcEEe-------------CHHHccCC-Ccchhhc-------CCCCcCH
Confidence            5678899999999999999999999999  8887751             11222222 3332211       0112466


Q ss_pred             HHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccC
Q 004807          358 DECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDT  437 (729)
Q Consensus       358 ~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~  437 (729)
                      ++++.....            +|+ |.  ....+++++.|.   +-++ ..++.|||++|.+......    +.      
T Consensus        88 ~~l~~~~i~------------~S~-N~--aa~~L~~~~gG~---~~~~-~~~~~lG~~~t~~~~~~~~----~~------  138 (258)
T 1ghp_A           88 KALIEASMT------------YSD-NT--ANNKIIKEIGGI---KKVK-QRLKELGDKVTNPVRYDIE----LQ------  138 (258)
T ss_dssp             HHHHHHHHH------------HCC-HH--HHHHHHHHHTCH---HHHH-HHHHHTTCCSCBCCSCTTG----GG------
T ss_pred             HHHHHHHHH------------hcc-HH--HHHHHHHHhCCH---HHHH-HHHHHcCCCceecCCCChh----hc------
Confidence            676665433            342 22  345677888773   3354 3578899999855211000    00      


Q ss_pred             cccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          438 DDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       438 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                                                 ....+.++..+|+.||++++++++++..+++.
T Consensus       139 -------------------------------------------~~~~~~~~~~~T~~d~a~~~~~l~~~~~ls~~  170 (258)
T 1ghp_A          139 -------------------------------------------YYSPKSKKDTSTPAAFGKTLNKLIANGKLSKE  170 (258)
T ss_dssp             -------------------------------------------CCCTTCCTTEECHHHHHHHHHHHTTSSSSCHH
T ss_pred             -------------------------------------------ccCCCCCCCccCHHHHHHHHHHHHcCCCCCHH
Confidence                                                       00013456689999999999999998776654

>1es5_A DD-transpeptidase; penicillin-binding, serine peptidase, BET lactamase, hydrolase carboxypeptidase, hydrolase; 1.40A {Streptomyces SP} SCOP: e.3.1.1 PDB: 1skf_A 1es2_A 1j9m_A 1esi_A 1es3_A 1es4_A

Probab=98.28  E-value=2.1e-06  Score=88.12  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             eEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          249 GIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       249 G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +-++.|+  ..|++++++             +++..|.+||++|.+|+++++   ++|+++||++|.
T Consensus         8 a~~~~v~d~~tG~vl~~~-------------n~~~~~~~AS~tKlmta~~~l---~~g~l~l~~~v~   58 (262)
T 1es5_A            8 AVGGYAMNNGTGTTLYTK-------------AADTRRSTGSTTKIMTAKVVL---AQSNLNLDAKVT   58 (262)
T ss_dssp             CSEEEEEETTTCCEEEEE-------------STTCCBCCGGGGHHHHHHHHH---TCTTCCTTCEEE
T ss_pred             eeEEEEEECCCCCEEEEE-------------CCCCcCCcHHHHHHHHHHHHH---HcCCCCCCCeEE
Confidence            3344454  578877652             578899999999999999887   899999999886

>1xp4_A D-alanyl-D-alanine carboxypeptidase; five-stranded antiparallel beta-sheet, omega-like loop, hydrolase; 2.80A {Streptococcus pneumoniae R6} SCOP: b.105.1.1 e.3.1.1

Probab=98.14  E-value=1.9e-05  Score=84.98  Aligned_cols=114  Identities=15%  Similarity=0.194  Sum_probs=74.5

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHh-c
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVL-N  334 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LL-t  334 (729)
                      ..|++++++             +.|..|.+||+||.+|++++++.+++|+|+||++|.-             +-.... .
T Consensus        23 ~tG~vl~~~-------------n~d~~~~~AS~tKlmta~~vl~~i~~G~l~ld~~V~v-------------s~~~~~~~   76 (379)
T 1xp4_A           23 NTGKILYEK-------------DATQPVEIASITKLITVYLVYEALENGSITLSTPVDI-------------SDYPYQLT   76 (379)
T ss_dssp             TTTEEEEEE-------------SCSSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEEC-------------CHHHHHTT
T ss_pred             CCCcEEEEE-------------CCCCcCCchHHHHHHHHHHHHHHHHcCCCCCCCEEEE-------------cHHHHhhc
Confidence            578888752             6788999999999999999999999999999998751             111111 0


Q ss_pred             ---CCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhC--CCHHHHHHHHhh
Q 004807          335 ---HTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASG--KKFQEILEEGII  409 (729)
Q Consensus       335 ---HtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG--~~~~~~l~e~If  409 (729)
                         --|.+.-        . ....+.++++..+.-            +|. |-  ..-.++|.+.|  ..|-+.|.++. 
T Consensus        77 ~~~~~S~~~l--------~-g~~~tv~dLl~~~ii------------~S~-Nd--Aa~aLae~vgGs~~~Fv~~MN~~a-  131 (379)
T 1xp4_A           77 TNSEASNIPM--------E-ARNYTVEELLEATLV------------SSA-NS--AAIALAEKIAGSEKDFVDMMRAKL-  131 (379)
T ss_dssp             TSCCSSCCCC--------T-TCEEEHHHHHHHHHH------------HCC-HH--HHHHHHHHHHSSHHHHHHHHHHHH-
T ss_pred             cCCCCceeeE--------C-CcEEEHHHHHHHHHh------------cCc-cH--HHHHHHHHcCCCHHHHHHHHHHHH-
Confidence               0111110        0 113566777766533            222 22  13345577777  35778888876 


Q ss_pred             hccCCCCccCC
Q 004807          410 QPLSIDGELYI  420 (729)
Q Consensus       410 ~PLGm~~T~~~  420 (729)
                      +.|||++|.|.
T Consensus       132 ~~LG~~~T~f~  142 (379)
T 1xp4_A          132 LEWGIQDATVV  142 (379)
T ss_dssp             HHTTCCSCBCC
T ss_pred             HHcCCceEEee
Confidence            89999999774

>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1

Probab=98.05  E-value=5.4e-06  Score=85.27  Aligned_cols=140  Identities=13%  Similarity=0.079  Sum_probs=87.7

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCH
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDW  357 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~  357 (729)
                      +++..|..||++|.+|+++++..+++|+  ||++|.-             +-++++.+ ||+....       +....+.
T Consensus        76 n~d~~~~~ASt~Kl~ta~~~l~~v~~G~--ld~~v~i-------------~~~~~~~~-s~i~~~~-------~g~~~tl  132 (266)
T 1alq_A           76 NSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHI-------------NKDDIVAY-SPILEKY-------VGKDITL  132 (266)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHSSCGGG--TTCEEEE-------------CGGGCCSS-CTTGGGG-------TTEEEEH
T ss_pred             CCCCeEecHHHHHHHHHHHHHHHHhcCC--CCceEEe-------------cHHHhcCC-CCceecC-------CCCceeH
Confidence            5678899999999999999999999999  8887761             11122222 2332211       1112566


Q ss_pred             HHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccC
Q 004807          358 DECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDT  437 (729)
Q Consensus       358 ~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~  437 (729)
                      ++++..+..            ||+ |.  ....+++++.|.   +-++ ..++.|||.+|.+........          
T Consensus       133 ~~Ll~~mi~------------~Sd-N~--Aa~~L~~~lgG~---~~~n-~~~~~lG~~~T~~~~~~~~l~----------  183 (266)
T 1alq_A          133 KALIEASMT------------YSD-NT--ANNKIIKEIGGI---KKVK-QRLKELGDKVTNPVRYEIELN----------  183 (266)
T ss_dssp             HHHHHHHHH------------HCC-HH--HHHHHHHHHTCH---HHHH-HHHHHTTCCSCCCCCCTTGGG----------
T ss_pred             HHHHHHHHh------------cCC-HH--HHHHHHHHcCCH---HHHH-HHHHHcCCCCcccCCCchhhc----------
Confidence            676665443            332 22  245677888774   3454 456789999986521100000          


Q ss_pred             cccccccccCCCCCCCCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          438 DDLNKVSGINNRPDLRLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       438 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                                                 ....+..+-++|++||+++++++++++.+++.
T Consensus       184 -------------------------------------------~~~~~~~~~~tTa~d~a~l~~~l~~g~~ls~~  215 (266)
T 1alq_A          184 -------------------------------------------YYSPKSKKDTSTPAAFGKTLNKLIANGKLSKE  215 (266)
T ss_dssp             -------------------------------------------CCCTTCCTTEECHHHHHHHHHHHTTSSSCCHH
T ss_pred             -------------------------------------------ccCCCCCCCcCCHHHHHHHHHHHHcCCCCCHH
Confidence                                                       00012334579999999999999999887765

>3mzf_A D-alanyl-D-alanine carboxypeptidase DACA; beta-lactam antibiotic, penicillin-binding protein, DD- carboxypeptidase, hydrolase; HET: IM2; 1.50A {Escherichia coli} PDB: 1nzu_A 1nzo_A* 3beb_A* 3bec_A* 3mzd_A* 3mze_A* 1z6f_A* 1nj4_A 1hd8_A 1sdn_A 4drt_A

Probab=98.02  E-value=3.7e-05  Score=81.96  Aligned_cols=54  Identities=20%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          247 ILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       247 ~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.+-+..++  ..|++++++             +.|..|.+||+||.+|+.+++..+++|+++||++|.
T Consensus        15 i~a~sail~D~~tG~vL~~k-------------n~d~~~~~AS~tKlmTa~~vl~~i~~G~l~ld~~v~   70 (363)
T 3mzf_A           15 IDAESYILIDYNSGKVLAEQ-------------NADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVT   70 (363)
T ss_dssp             CCEEEEEEEETTTCCEEEEE-------------STTCCBCCGGGHHHHHHHHHHHHHHTTSCCTTCEEE
T ss_pred             cceeEEEEEECCCCCEeEEE-------------CCCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence            334444444  467877642             678889999999999999999999999999999874

>3ita_A D-alanyl-D-alanine carboxypeptidase DACC; ppenicillin-binding protein, BP6, DD-carboxypeptidase, peptidoglycan, ampicillin, acyl-enzyme complex; HET: AIX AIC; 1.80A {Escherichia coli} PDB: 3it9_A* 3itb_A*

Probab=98.01  E-value=3e-05  Score=82.35  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=39.6

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|++++++             +.|..|.+||+||.+|+.+++..+++|+++||++|.
T Consensus        22 ~tG~vL~~k-------------n~d~~~~~AS~tKlmTa~~vl~~i~~G~l~ld~~v~   66 (352)
T 3ita_A           22 ASGKVLAEG-------------NADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVT   66 (352)
T ss_dssp             TTCCEEEEE-------------STTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEE
T ss_pred             CCCCEeEEE-------------CCCCcccchHHHHHHHHHHHHHHHHcCCCCCCCEEE
Confidence            468887752             678889999999999999999999999999999875

>3ny4_A Beta-lactamase, penicillinase; penicillin binding protein, beta-lactam complex, hydrolase-A complex; HET: SMX; 1.22A {Mycobacterium tuberculosis} PDB: 3m6b_A* 3dwz_A* 3iqa_A* 3cg5_A* 3m6h_A* 4df6_A* 2gdn_A 3vfh_A* 3vff_A* 3n8l_A* 3n6i_A* 3n7w_A* 3n8r_A* 3n8s_A* 3nbl_A* 3nc8_A* 3nck_A* 3nde_A* 3ndg_A*

Probab=98.00  E-value=0.00012  Score=75.18  Aligned_cols=33  Identities=15%  Similarity=0.075  Sum_probs=28.6

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCch
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENI  312 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v  312 (729)
                      +.+..|..+|++|.+++++++..+++|  +||++|
T Consensus        33 n~d~~~~~AS~~Kl~~~~~~l~~~~~~--~ld~~v   65 (265)
T 3ny4_A           33 RADERFAFCSTFAAPLVAAVLHQNPLT--HLDKLI   65 (265)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHSCGG--GGGCEE
T ss_pred             CCCCceechHHHHHHHHHHHHHHhhcC--CCCceE
Confidence            678889999999999999999998876  677765

>3qhy_A Beta-lactamase; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Bacillus anthracis}

Probab=97.98  E-value=8.7e-05  Score=76.35  Aligned_cols=65  Identities=23%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGK  305 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~  305 (729)
                      ..+.+.+.+++++.   .+-.|+  +|+  ..|+++ .  +           +.|..|..+|++|.+++.+++..+++| 
T Consensus        12 ~~l~~~l~~l~~~~---~~~~gv--~v~d~~tg~~l-~--~-----------n~d~~~~~AS~~Kl~~~~~~l~~~~~g-   71 (271)
T 3qhy_A           12 QATHKEFSQLEKKF---DARLGV--YAIDTGTNQTI-A--Y-----------RPNERFAFASTYKALAAGVLLQQNSTK-   71 (271)
T ss_dssp             --CHHHHHHHHHHH---TCEEEE--EEEETTTCCEE-E--E-----------STTCCEECGGGHHHHHHHHHHHHSCGG-
T ss_pred             HHHHHHHHHHHHhc---CCeEEE--EEEECCCCCEE-E--E-----------CCCCcccchHHHHHHHHHHHHHHhhCC-
Confidence            44555666665543   222233  444  466655 2  2           678889999999999999999999888 


Q ss_pred             CCccCchh
Q 004807          306 LKLEENIA  313 (729)
Q Consensus       306 l~ldd~v~  313 (729)
                       +||++|.
T Consensus        72 -~ld~~v~   78 (271)
T 3qhy_A           72 -KLDEVIT   78 (271)
T ss_dssp             -GGGSEEC
T ss_pred             -CCCCeEE
Confidence             6777653

>3cjm_A Putative beta-lactamase; NP_815223.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; HET: MSE; 1.50A {Enterococcus faecalis}

Probab=97.95  E-value=0.00027  Score=73.15  Aligned_cols=76  Identities=17%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             CCCCchHHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHH
Q 004807          223 SKPIHSDVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWL  300 (729)
Q Consensus       223 ~~p~~~~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~l  300 (729)
                      +.+........+++.|+++++..+. -+++.|+  ..|+++ .  +           +++..|..||++|.+|+++++..
T Consensus        26 ~~~~~~~~~~~l~~~l~~~~~~~~~-~~gv~v~D~~tG~~~-~--~-----------n~d~~~~~AS~~Kl~~a~~~l~~   90 (282)
T 3cjm_A           26 NNSANTVFFDKINDLLVASVKEFEG-TVGISYLDLETGEQR-S--V-----------NGQHEFYTASTIKVPLTMLVADT   90 (282)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHCSS-EEEEEEEETTTCCEE-E--E-----------STTCCEECGGGGHHHHHHHHHHH
T ss_pred             cChhhhhhHHHHHHHHHHHHHhcCC-eEEEEEEECCCCCEE-E--E-----------CCCCeeccHHHHHHHHHHHHHHH
Confidence            3334455666667777666654332 2234444  456653 2  2           66888999999999999999999


Q ss_pred             HHCCCCCccCchh
Q 004807          301 VDNGKLKLEENIA  313 (729)
Q Consensus       301 ve~G~l~ldd~v~  313 (729)
                      +++|+++||++|.
T Consensus        91 v~~G~l~ld~~v~  103 (282)
T 3cjm_A           91 VASGQKKWTDLIP  103 (282)
T ss_dssp             HHTTSCCTTCEEE
T ss_pred             HHCCCCCCcceEE
Confidence            9999999999875

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=97.91  E-value=1.5e-05  Score=81.48  Aligned_cols=75  Identities=15%  Similarity=0.336  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHHHHHHHH-HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHH
Q 004807           17 VNKQKVVEEITRAYAHQIY-VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLS   95 (729)
Q Consensus        17 ~d~~~la~~l~~~~~~qif-~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~   95 (729)
                      .+...++..+++++.. ++ ..|++|+|+||+||++..    ++.|+|||++..++......       ...+|.+.+.+
T Consensus       170 ~~~~~i~~qi~~~l~~-lH~~~givHrDlkp~NILl~~----~~~liDFG~a~~~~~~~~~~-------~l~rd~~~~~~  237 (258)
T 1zth_A          170 LDVEGIFNDVVENVKR-LYQEAELVHADLSEYNIMYID----KVYFIDMGQAVTLRHPMAES-------YLERDVRNIIR  237 (258)
T ss_dssp             SCHHHHHHHHHHHHHH-HHHTSCEECSSCSTTSEEESS----SEEECCCTTCEETTSTTHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHHCCEEeCCCCHHHEEEcC----cEEEEECcccccCCCccHHH-------HHHHHHHHHHH
Confidence            4677888888887655 56 899999999999999963    89999999999887654333       35788888999


Q ss_pred             HHHHcCCc
Q 004807           96 AFAEMGLR  103 (729)
Q Consensus        96 ~l~~lG~~  103 (729)
                      .+..+|+.
T Consensus       238 ~f~~~g~~  245 (258)
T 1zth_A          238 FFSKYGVK  245 (258)
T ss_dssp             HHHTTTCC
T ss_pred             HHHHcCCC
Confidence            99889875

>3lez_A Beta-lactamase; antibiotic resistance, halotolerant, DEEP- SEA bacterium, hydrolase; HET: EPE; 1.25A {Oceanobacillus iheyensis} SCOP: e.3.1.1

Probab=97.79  E-value=0.00055  Score=69.91  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=28.6

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCch
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENI  312 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v  312 (729)
                      +.|..|..+|++|.+++.+++..+++|  +||++|
T Consensus        32 n~d~~~~~AS~~Kl~~~~~~l~~~~~g--~ld~~v   64 (260)
T 3lez_A           32 RENERFAYTSTFKPLAVGAVLQTKSDE--ELEETI   64 (260)
T ss_dssp             STTSEEECGGGGHHHHHHHHHHHCCHH--HHHSEE
T ss_pred             CCCCcccchHHHHHHHHHHHHHhccCC--CCCceE
Confidence            678899999999999999999998887  566655

>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*

Probab=97.74  E-value=0.00024  Score=77.20  Aligned_cols=45  Identities=22%  Similarity=0.336  Sum_probs=39.6

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|++++++             ++|..+.+||+||.+|+.+++..+++|+|+||++|.
T Consensus        79 ~TG~vL~~k-------------Nad~~~~pAS~TKlMTa~~vle~i~~Gkl~Ld~~Vt  123 (453)
T 3hun_A           79 QTGQLLYQY-------------NIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVT  123 (453)
T ss_dssp             TTSBEEEEE-------------STTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEE
T ss_pred             CCCCEEEEE-------------CCCCcccchHHHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence            567777652             678889999999999999999999999999999874

>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A

Probab=97.67  E-value=0.00062  Score=78.84  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=33.7

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|..|.++|+.|.++++++++.+++|+++||++|.
T Consensus       417 ~~d~~fp~aS~~K~~~~~~~l~~~~~g~~~l~~~v~  452 (637)
T 4dxb_A          417 RPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIH  452 (637)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEC
T ss_pred             CCCCeeccHHHHHHHHHHHHHHHHhcCCCCCCceEE
Confidence            667789999999999999999999999999999884

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=97.65  E-value=8.6e-06  Score=87.70  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=33.6

Q ss_pred             HHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           33 QIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        33 qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .+...|++|+|+||+||+++.+  |++.|+|||+++.++..
T Consensus       215 ~LH~~gi~H~Dlkp~NIl~~~~--~~ikl~DfG~~~~~~~~  253 (365)
T 2y7j_A          215 FLHANNIVHRDLKPENILLDDN--MQIRLSDFGFSCHLEPG  253 (365)
T ss_dssp             HHHHTTEECSCCSGGGEEECTT--CCEEECCCTTCEECCTT
T ss_pred             HHHhCCeecCCCCHHHEEECCC--CCEEEEecCcccccCCC
Confidence            3445999999999999999865  89999999999988753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.29  E-value=0.00015  Score=82.84  Aligned_cols=69  Identities=22%  Similarity=0.403  Sum_probs=54.6

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      |+|..|.+...- ....+..+|+..++++ +.-+...|++|.|.+|.|||++.+  |++.|+|||+.+.+...
T Consensus       324 v~G~~L~d~i~~-~~~l~~~~I~~QIl~A-L~ylH~~GIIHRDIKPeNILL~~d--g~vKL~DFGlAr~~~~~  392 (569)
T 4azs_A          324 LPGRLLSDMLAA-GEEIDREKILGSLLRS-LAALEKQGFWHDDVRPWNVMVDAR--QHARLIDFGSIVTTPQD  392 (569)
T ss_dssp             CCSEEHHHHHHT-TCCCCHHHHHHHHHHH-HHHHHHTTCEESCCCGGGEEECTT--SCEEECCCTTEESCC--
T ss_pred             CCCCcHHHHHHh-CCCCCHHHHHHHHHHH-HHHHHHCCceeccCchHhEEECCC--CCEEEeecccCeeCCCC
Confidence            577777776542 2346778888888875 566699999999999999999865  89999999999988764

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=97.20  E-value=0.00066  Score=70.13  Aligned_cols=85  Identities=21%  Similarity=0.268  Sum_probs=60.8

Q ss_pred             CceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHH
Q 004807            2 DGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKM   81 (729)
Q Consensus         2 ~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L   81 (729)
                      +|..+.++     ...+...++..++++. ..+...|++|+|.+|.||++. +  |++.|+|||++..++...-..+   
T Consensus       183 ~g~~L~~l-----~~~~~~~i~~qi~~~l-~~lH~~giiHrDlkp~NILl~-~--~~vkl~DFG~a~~~~~~~a~e~---  250 (282)
T 1zar_A          183 DAKELYRV-----RVENPDEVLDMILEEV-AKFYHRGIVHGDLSQYNVLVS-E--EGIWIIDFPQSVEVGEEGWREI---  250 (282)
T ss_dssp             CCEEGGGC-----CCSCHHHHHHHHHHHH-HHHHHTTEECSCCSTTSEEEE-T--TEEEECCCTTCEETTSTTHHHH---
T ss_pred             CCCcHHHc-----chhhHHHHHHHHHHHH-HHHHHCCCEeCCCCHHHEEEE-C--CcEEEEECCCCeECCCCCHHHH---
Confidence            45555552     1245667888888775 446899999999999999998 5  8999999999998876533222   


Q ss_pred             HHHHHhCCHHHHHHHH-HHcCC
Q 004807           82 FFAAAEGDHVALLSAF-AEMGL  102 (729)
Q Consensus        82 ~~a~~~~D~~~~~~~l-~~lG~  102 (729)
                          ..+|.+.+.+.+ ...|+
T Consensus       251 ----l~rdv~~i~~~f~~~~~~  268 (282)
T 1zar_A          251 ----LERDVRNIITYFSRTYRT  268 (282)
T ss_dssp             ----HHHHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHHHHhcCC
Confidence                356666666666 55554

>3mfd_A D-alanyl-D-alanine carboxypeptidase DACB; penicillin-binding protein 5*, beta-lactamase, structural GE PSI-2, protein structure initiative; HET: CIT; 1.75A {Bacillus subtilis}

Probab=97.13  E-value=0.0038  Score=65.44  Aligned_cols=109  Identities=16%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCCccCCCCCCcHHHHhcC
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNH  335 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~~~~~~~~iTir~LLtH  335 (729)
                      ..|++++++             +.|..+.+||+||.+|+.++   +++|+  ||++|.             |+=......
T Consensus        18 ~tG~vL~~k-------------n~d~~~~pAS~tKlmTa~~a---l~~g~--ld~~v~-------------vs~~a~~~~   66 (334)
T 3mfd_A           18 ASGRVLYAK-------------DEHQKRRIASITKIMTAVLA---IESGK--MDQTVT-------------VSANAVRTE   66 (334)
T ss_dssp             TTCCEEEEE-------------STTCCBCCGGGGHHHHHHHH---HHTTC--TTSEEE-------------CCHHHHHCC
T ss_pred             CCCcEeeEE-------------CCCCcccchHHHHHHHHHHH---HhcCC--CCCeEE-------------eCHHHhccC
Confidence            468887752             67788999999999999774   57887  566553             111111111


Q ss_pred             CCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHHHHHHHHHhCC--CHHHHHHHHhhhccC
Q 004807          336 TSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGK--KFQEILEEGIIQPLS  413 (729)
Q Consensus       336 tSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lLg~iie~vtG~--~~~~~l~e~If~PLG  413 (729)
                      -|.+.-        .+....+.++++..+.-            +|. |-  ..-.++|.+.|-  .|-+.|.++ .+-||
T Consensus        67 gS~~~l--------~~G~~~tv~dLl~~~~i------------~S~-Nd--Aa~aLAe~igGs~~~Fv~~MN~~-A~~LG  122 (334)
T 3mfd_A           67 GSAIYL--------TEGQKVKLKDLVYGLML------------RSG-ND--AAVAIAEHVGGSLDGFVYMMNQK-AEQLG  122 (334)
T ss_dssp             SSCCCC--------CTTCEEEHHHHHHHHHH------------HCC-HH--HHHHHHHHHHSSHHHHHHHHHHH-HHHHT
T ss_pred             Cceeee--------CCCCEeEHHHHHHHHHH------------hCh-HH--HHHHHHHHhhCCHHHHHHHHHHH-HHHCC
Confidence            122210        11113556666665432            221 11  233455666663  355666665 67899


Q ss_pred             CCCccC
Q 004807          414 IDGELY  419 (729)
Q Consensus       414 m~~T~~  419 (729)
                      |++|.|
T Consensus       123 m~~T~f  128 (334)
T 3mfd_A          123 MKNTRF  128 (334)
T ss_dssp             CTTCBC
T ss_pred             CcCcEE
Confidence            999977

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=97.01  E-value=0.00039  Score=74.92  Aligned_cols=91  Identities=13%  Similarity=0.245  Sum_probs=63.0

Q ss_pred             CCceecCCHHhHhhcCCCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCC--------CeEEEecccccccCH
Q 004807            1 MDGIRLNDCESLEAFGVNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH--------RPILLDFGLTKKLSS   72 (729)
Q Consensus         1 i~G~ki~d~~~l~~~~~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g--------~lvllDfG~v~~l~~   72 (729)
                      |+|.++.++..    -.+..++...++.+. ..++..|++|+|.+|.|||+.+++++        ++++|||+++-..+-
T Consensus       193 i~G~~L~~l~~----~~~~~~l~~qll~~l-~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~h  267 (397)
T 4gyi_A          193 VDALPMRQVSS----VPDPASLYADLIALI-LRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMDH  267 (397)
T ss_dssp             CSCEEGGGCCC----CSCHHHHHHHHHHHH-HHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETTS
T ss_pred             cCCccHhhhcc----cHHHHHHHHHHHHHH-HHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccCCC
Confidence            45666554422    245778888888776 45689999999999999999986322        389999999888764


Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHH-HcCCc
Q 004807           73 SMKQALAKMFFAAAEGDHVALLSAFA-EMGLR  103 (729)
Q Consensus        73 ~~r~~l~~L~~a~~~~D~~~~~~~l~-~lG~~  103 (729)
                      ..-.       -++.+|..-+.+.+. +.++.
T Consensus       268 p~a~-------~~l~RDv~ni~~fF~kk~~~~  292 (397)
T 4gyi_A          268 PNAE-------MYFDRDVQCIKRFFERRFHFV  292 (397)
T ss_dssp             TTHH-------HHHHHHHHHHHHHHHHHHCCC
T ss_pred             CChH-------HHHHHHHHHHHHHHHhccCCc
Confidence            3222       234567777777764 35554

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=96.92  E-value=0.00059  Score=71.73  Aligned_cols=56  Identities=20%  Similarity=0.339  Sum_probs=42.6

Q ss_pred             cCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           15 FGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        15 ~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ...+...+...+.++.  +..+...|++|+|+||+||+++.+  +++.|.|||++..++.
T Consensus       136 ~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~~~~~~~  193 (321)
T 2c30_A          136 VRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLD--GRVKLSDFGFCAQISK  193 (321)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTT--CCEEECCCTTCEECCS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCC--CcEEEeeeeeeeeccc
Confidence            3455555444444443  566788999999999999999865  8999999999887764

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=96.58  E-value=0.0014  Score=68.39  Aligned_cols=52  Identities=21%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++++ +..+...|++|+|+||+||+++.+  +++.|.|||++..++...
T Consensus       167 ~~i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~DfG~a~~~~~~~  218 (332)
T 3qd2_B          167 LHIFIQIAEA-VEFLHSKGLMHRDLKPSNIFFTMD--DVVKVGDFGLVTAMDQDE  218 (332)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEECSCC-
T ss_pred             HHHHHHHHHH-HHHHHhCCeeecCCCcccEEEeCC--CCEEEeecCcccccccch
Confidence            3455555544 344568999999999999999865  899999999999887654

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=96.56  E-value=0.0019  Score=69.47  Aligned_cols=36  Identities=11%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             HHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           34 IYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        34 if~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +...|++|+|++|.||+++.+  |++.|.|||+....+
T Consensus       222 LH~~~ivHrDikp~NIll~~~--~~~kL~DFG~a~~~~  257 (377)
T 3byv_A          222 LHHYGLVHTYLRPVDIVLDQR--GGVFLTGFEHLVRDG  257 (377)
T ss_dssp             HHHTTEECSCCCGGGEEECTT--CCEEECCGGGCEETT
T ss_pred             HHhCCeecCCCCHHHEEEcCC--CCEEEEechhheecC
Confidence            456999999999999999865  899999999987543

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=96.55  E-value=0.002  Score=65.85  Aligned_cols=49  Identities=20%  Similarity=0.327  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       125 i~~qi~~~-l~~lH~~~i~H~dikp~Nili~~~--~~~kl~Dfg~~~~~~~~  173 (283)
T 3gen_A          125 MCKDVCEA-MEYLESKQFLHRDLAARNCLVNDQ--GVVKVSDFGLSRYVLDD  173 (283)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSSCSGGGEEECTT--SCEEECSTTGGGGBCCH
T ss_pred             HHHHHHHH-HHHHHHCCccCCCCccceEEEcCC--CCEEEcccccccccccc
Confidence            34444433 566678999999999999999864  89999999999877654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=96.54  E-value=0.002  Score=67.99  Aligned_cols=69  Identities=16%  Similarity=0.132  Sum_probs=41.6

Q ss_pred             ceecCCHHhHhhcCCCHHHHHHHHHHHH--HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807            3 GIRLNDCESLEAFGVNKQKVVEEITRAY--AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus         3 G~ki~d~~~l~~~~~d~~~la~~l~~~~--~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      |..+.++........+...+...+.++.  +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       130 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~--~~~kl~Dfg~~~~~~~~  200 (333)
T 1mqb_A          130 NGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSN--LVCKVSDFGLSRVLEDD  200 (333)
T ss_dssp             TEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT--CCEEECCCCC-------
T ss_pred             CCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCC--CcEEECCCCcchhhccc
Confidence            4444444332222345444444433333  556788999999999999999864  89999999999887654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=96.51  E-value=0.0018  Score=69.67  Aligned_cols=50  Identities=18%  Similarity=0.342  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+.++++.|.|||+...+.+
T Consensus       192 i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~  241 (373)
T 2x4f_A          192 FMKQICEG-IRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKP  241 (373)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCC
Confidence            34444433 445678999999999999999755457899999999987754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=96.45  E-value=0.0021  Score=65.81  Aligned_cols=54  Identities=24%  Similarity=0.321  Sum_probs=33.4

Q ss_pred             CCHHHH---HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           17 VNKQKV---VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        17 ~d~~~l---a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .+...+   +..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       113 ~~~~~~~~~~~qi~~~-l~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~  169 (281)
T 1mp8_A          113 LDLASLILYAYQLSTA-LAYLESKRFVHRDIAARNVLVSSN--DCVKLGDFGLSRYMEDS  169 (281)
T ss_dssp             SCHHHHHHHHHHHHHH-HHHHHHTTCCCSCCSGGGEEEEET--TEEEECC----------
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHhCCeecccccHHHEEECCC--CCEEECccccccccCcc
Confidence            444443   3444443 456678999999999999999875  89999999999877543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=96.44  E-value=0.0027  Score=65.28  Aligned_cols=50  Identities=20%  Similarity=0.349  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .+...++.+. +-+...|++|+|.+|.||+++.+  |++.|.|||+.+.+++.
T Consensus       116 ~~~~qi~~al-~ylH~~~IiHRDiKP~NILl~~~--~~vkl~DFGla~~~~~~  165 (275)
T 3hyh_A          116 RFFQQIISAV-EYCHRHKIVHRDLKPENLLLDEH--LNVKIADFGLSNIMTDG  165 (275)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCCCCCTTTEEECTT--CCEEECCSSCC------
T ss_pred             HHHHHHHHHH-HHHHHCCcccccCChHHeEECCC--CCEEEeecCCCeecCCC
Confidence            3444444443 44578999999999999999864  89999999999876543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=96.40  E-value=0.0022  Score=66.09  Aligned_cols=49  Identities=27%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++..
T Consensus       119 ~~~qi~~~-l~~lH~~~ivH~Dikp~Nil~~~~--~~~kl~Dfg~~~~~~~~  167 (295)
T 3ugc_A          119 YTSQICKG-MEYLGTKRYIHRDLATRNILVENE--NRVKIGDFGLTKVLPQD  167 (295)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEEEET--TEEEECCCCSCC-----
T ss_pred             HHHHHHHH-HHHHhcCCcccCCCCHhhEEEcCC--CeEEEccCcccccccCC
Confidence            34444443 455678999999999999999875  89999999999887654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=96.40  E-value=0.0026  Score=69.45  Aligned_cols=40  Identities=25%  Similarity=0.423  Sum_probs=34.6

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +.-+...|++|.|.+|.|||++.+  |.|-|.|||+++.+..
T Consensus       260 L~ylH~~~IiHRDiKp~NILl~~~--g~vKl~DFGla~~~~~  299 (423)
T 4fie_A          260 LSVLHAQGVIHRDIKSDSILLTHD--GRVKLSDFGFCAQVSK  299 (423)
T ss_dssp             HHHHHHTTEECCCCSTTTEEECTT--CCEEECCCTTCEECCS
T ss_pred             HHHHHHCCeecccCCHHHEEEcCC--CCEEEecCccceECCC
Confidence            344578999999999999999865  8999999999988764

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=96.37  E-value=0.0034  Score=66.81  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..++.+ +.-+...|++|.|.+|.|||++.+  |.+-|.|||+.+.+....
T Consensus       130 ~~~qi~~a-L~ylH~~~IiHRDlKp~NILl~~~--g~vKl~DFGla~~~~~~~  179 (350)
T 4b9d_A          130 WFVQICLA-LKHVHDRKILHRDIKSQNIFLTKD--GTVQLGDFGIARVLNSTV  179 (350)
T ss_dssp             HHHHHHHH-HHHHHHTTCEETTCCGGGEEECTT--CCEEECSTTEESCCCHHH
T ss_pred             HHHHHHHH-HHHHHHCCeeeccCCHHHEEECCC--CCEEEcccccceeecCCc
Confidence            44455544 344578999999999999999865  899999999999998653

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=96.37  E-value=0.0024  Score=67.10  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       156 i~~qi~~~-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~a~~~~~~  204 (325)
T 3kul_A          156 MLRGVGAG-MRYLSDLGYVHRDLAARNVLVDSN--LVCKVSDFGLSRVLEDD  204 (325)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--CCEEECCCSSCEECC--
T ss_pred             HHHHHHHH-HHHHHHCCeeCCCCCcceEEECCC--CCEEECCCCcccccccC
Confidence            33343332 466678999999999999999764  89999999999887654

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=96.35  E-value=0.0024  Score=64.64  Aligned_cols=48  Identities=21%  Similarity=0.300  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       109 i~~qi~~~-l~~lH~~~i~H~dikp~Nil~~~~--~~~~l~Dfg~~~~~~~  156 (268)
T 3sxs_A          109 MCYDVCEG-MAFLESHQFIHRDLAARNCLVDRD--LCVKVSDFGMTRYVLD  156 (268)
T ss_dssp             HHHHHHHH-HHHHHHTTEEESSCSGGGEEECTT--CCEEECCTTCEEECCT
T ss_pred             HHHHHHHH-HHHHHHCCeecCCcCcceEEECCC--CCEEEccCccceecch
Confidence            34444433 556678999999999999999864  8999999999876643

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=96.34  E-value=0.0024  Score=65.90  Aligned_cols=40  Identities=28%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       139 l~~lH~~~i~H~dikp~Nil~~~~--~~~kl~Dfg~~~~~~~  178 (302)
T 4e5w_A          139 MDYLGSRQYVHRDLAARNVLVESE--HQVKIGDFGLTKAIET  178 (302)
T ss_dssp             HHHHHHTTEECSCCSGGGEEEEET--TEEEECCCTTCEECCT
T ss_pred             HHHhhcCCcccCCCchheEEEcCC--CCEEECcccccccccC
Confidence            456678999999999999999875  8999999999876543

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=96.31  E-value=0.0029  Score=64.15  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=35.5

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..+...|++|+|.+|.||++..+  +++.|.|||+...+...
T Consensus       119 l~~lH~~~i~H~dikp~Nil~~~~--~~~kl~Dfg~~~~~~~~  159 (269)
T 4hcu_A          119 MAYLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDD  159 (269)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECGG--GCEEECCTTGGGGBCCH
T ss_pred             HHHHHhCCeecCCcchheEEEcCC--CCEEecccccccccccc
Confidence            556679999999999999999765  89999999999877654

>2bcf_A Probable D-alanyl-D-alanine carboxypeptidase DACB2; penicillin-binding protein, DD-2 carboxypeptidase, directed evolution; 2.30A {Mycobacterium tuberculosis}

Probab=96.30  E-value=0.017  Score=59.21  Aligned_cols=46  Identities=17%  Similarity=0.117  Sum_probs=33.4

Q ss_pred             EEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          250 IQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       250 ~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      .++.|+  ..|++++++             +++..|.+||++|.+|+++++..     ++||++|.
T Consensus        20 ~~~~v~D~~tG~vl~~~-------------n~d~~~~pAS~tKlmta~~~le~-----~~ld~~v~   67 (276)
T 2bcf_A           20 QTWIVADLDSGQVLAGR-------------DQNVAHPPASTIKVLLALVALDE-----LDLNSTVV   67 (276)
T ss_dssp             SEEEEEETTTCEEEEEE-------------STTCCBCCGGGHHHHHHHHHHHH-----CCTTCEEE
T ss_pred             cEEEEEECCCCCEEEEE-------------CCCCcCCcHHHHHHHHHHHHHHh-----CCCCCEEE
Confidence            344555  468877642             57888999999999999999875     34666553

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=96.30  E-value=0.0035  Score=65.09  Aligned_cols=52  Identities=17%  Similarity=0.314  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.....
T Consensus       112 ~i~~qi~~a-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~~~  163 (310)
T 3s95_A          112 SFAKDIASG-MAYLHSMNIIHRDLNSHNCLVREN--KNVVVADFGLARLMVDEKT  163 (310)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSTTSEEECTT--SCEEECCCTTCEECC----
T ss_pred             HHHHHHHHH-HHHHHhCCccCCCCCcCeEEECCC--CCEEEeecccceecccccc
Confidence            344444444 455679999999999999999864  8999999999998876543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=96.29  E-value=0.0027  Score=67.51  Aligned_cols=40  Identities=25%  Similarity=0.423  Sum_probs=34.6

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +.-+...|++|.|.+|.|||++.+  |.|-|.|||+.+.+..
T Consensus       183 L~ylH~~~IiHRDlKp~NILl~~~--g~vKl~DFGla~~~~~  222 (346)
T 4fih_A          183 LSVLHAQGVIHRDIKSDSILLTHD--GRVKLSDFGFCAQVSK  222 (346)
T ss_dssp             HHHHHHTTEECCCCSGGGEEECTT--CCEEECCCTTCEECCS
T ss_pred             HHHHHHCCcccccCCHHHEEECCC--CCEEEecCcCceecCC
Confidence            444578999999999999999865  8999999999988754

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=96.27  E-value=0.0033  Score=64.19  Aligned_cols=48  Identities=23%  Similarity=0.222  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+...
T Consensus       119 ~~~i~~~-l~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~  166 (281)
T 3cc6_A          119 SLQICKA-MAYLESINCVHRDIAVRNILVASP--ECVKLGDFGLSRYIEDE  166 (281)
T ss_dssp             HHHHHHH-HHHHHHTTCCCCCCSGGGEEEEET--TEEEECCCCGGGCC---
T ss_pred             HHHHHHH-HHHHHHCCcccCCCccceEEECCC--CcEEeCccCCCcccccc
Confidence            3344433 455678999999999999999875  79999999999887654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=96.25  E-value=0.0029  Score=66.37  Aligned_cols=52  Identities=15%  Similarity=0.204  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ...++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++..
T Consensus       117 ~~~~~~qi~~~-l~~lH~~~ivH~Dikp~Nil~~~~--~~~kl~Dfg~a~~~~~~  168 (325)
T 3kex_A          117 LLNWGVQIAKG-MYYLEEHGMVHRNLAARNVLLKSP--SQVQVADFGVADLLPPD  168 (325)
T ss_dssp             HHHHHHHHHHH-HHHHHHTTCCCSCCSSTTEEESSS--SCEEECSCSGGGGSCCC
T ss_pred             HHHHHHHHHHH-HHHHHhCCCCCCccchheEEECCC--CeEEECCCCcccccCcc
Confidence            34455555554 455678999999999999999764  89999999999877543

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=96.25  E-value=0.0024  Score=64.16  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             CccccCCCCCCeEEecCCCCCeE-EEecccccccCHHHH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPI-LLDFGLTKKLSSSMK   75 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lv-llDfG~v~~l~~~~r   75 (729)
                      ++.|+|+||+||+++.   ++++ |||||.++.-++..=
T Consensus       185 ~l~HgDl~~~Nil~~~---~~~~~liD~~~a~~g~~~~D  220 (264)
T 1nd4_A          185 VVTHGDACLPNIMVEN---GRFSGFIDCGRLGVADRYQD  220 (264)
T ss_dssp             EEECSSCCGGGEEEET---TEEEEECCCTTCEEEETHHH
T ss_pred             EEECCCCCCCcEEEEC---CcEEEEEcchhcccCChHHH
Confidence            4999999999999964   4554 999999988776543

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=96.22  E-value=0.0023  Score=66.96  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=34.8

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +.-+...|++|.|.+|.|||++.+  |.|-|.|||+.+.++.+
T Consensus       145 l~ylH~~~IiHRDlKPeNILl~~~--g~vKl~DFGla~~~~~~  185 (311)
T 4aw0_A          145 LEYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPE  185 (311)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTT--SCEEECCCTTCEECCTT
T ss_pred             HHHHHHCCCccCCCCHHHeEEcCC--CCEEEEEcCCceecCCC
Confidence            344468999999999999999865  89999999999988654

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=96.22  E-value=0.0034  Score=65.13  Aligned_cols=67  Identities=16%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             ceecCCHHhHhhcCCCHHHH---HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807            3 GIRLNDCESLEAFGVNKQKV---VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus         3 G~ki~d~~~l~~~~~d~~~l---a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      |..+.++........+...+   +..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       108 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~-l~~lH~~~i~H~dl~p~Nil~~~~--~~~kl~dfg~~~~~~~  177 (314)
T 3com_A          108 AGSVSDIIRLRNKTLTEDEIATILQSTLKG-LEYLHFMRKIHRDIKAGNILLNTE--GHAKLADFGVAGQLTD  177 (314)
T ss_dssp             TEEHHHHHHHHTCCCCHHHHHHHHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--CCEEECCCTTCEECBT
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHHHHhCCCcCCCcCHHHEEECCC--CCEEEeecccchhhhh
Confidence            44444444333334444443   4444433 455678999999999999999865  8999999999977654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=96.18  E-value=0.0033  Score=65.08  Aligned_cols=48  Identities=23%  Similarity=0.334  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++.
T Consensus       121 ~~~qi~~~-l~~lH~~~i~H~Dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~  168 (297)
T 3fxz_A          121 VCRECLQA-LEFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITP  168 (297)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--CCEEECCCTTCEECCS
T ss_pred             HHHHHHHH-HHHHHhCCceeCCCCHHHEEECCC--CCEEEeeCCCceecCC
Confidence            34444443 456678999999999999999865  8999999999877654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=96.17  E-value=0.0033  Score=64.78  Aligned_cols=48  Identities=15%  Similarity=0.291  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       133 i~~ql~~~-l~~lH~~~i~H~dikp~Nil~~~~--~~~kl~Dfg~a~~~~~  180 (298)
T 3f66_A          133 FGLQVAKG-MKYLASKKFVHRDLAARNCMLDEK--FTVKVADFGLARDMYD  180 (298)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEECTT--CCEEECSCGGGCCCSC
T ss_pred             HHHHHHHH-HHHHHhCCccCCCCchheEEECCC--CCEEECcccccccccc
Confidence            34444443 556678999999999999999764  8999999999987754

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=96.16  E-value=0.004  Score=66.45  Aligned_cols=50  Identities=22%  Similarity=0.390  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+.++++.|.|||+...+..
T Consensus       157 i~~qi~~~-l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~  206 (364)
T 3op5_A          157 LSLRILDI-LEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCP  206 (364)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSG
T ss_pred             HHHHHHHH-HHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceeccc
Confidence            34444433 455678899999999999999843458999999999977654

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=96.16  E-value=0.0034  Score=65.80  Aligned_cols=53  Identities=26%  Similarity=0.441  Sum_probs=40.1

Q ss_pred             CCHHHHH---HHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           17 VNKQKVV---EEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        17 ~d~~~la---~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .+...+.   ..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++.
T Consensus       142 ~~~~~~~~i~~qi~~a-L~~LH~~~ivH~dikp~NIli~~~--~~~kL~Dfg~~~~~~~  197 (326)
T 2w1i_A          142 IDHIKLLQYTSQICKG-MEYLGTKRYIHRDLATRNILVENE--NRVKIGDFGLTKVLPQ  197 (326)
T ss_dssp             SCHHHHHHHHHHHHHH-HHHHHHTTEECSCCCGGGEEEEET--TEEEECCCTTCEECCS
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHhCCEeccCCCcceEEEcCC--CcEEEecCcchhhccc
Confidence            4544443   333333 455678999999999999999875  8999999999887643

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=96.15  E-value=0.0047  Score=63.76  Aligned_cols=49  Identities=22%  Similarity=0.377  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.+.
T Consensus       116 ~~~qi~~~-l~~lH~~~i~H~Dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~  164 (294)
T 4eqm_A          116 FTNQILDG-IKHAHDMRIVHRDIKPQNILIDSN--KTLKIFDFGIAKALSET  164 (294)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEECCCSSSTTC---
T ss_pred             HHHHHHHH-HHHHHHCCcccCCCCHHHEEECCC--CCEEEEeCCCccccccc
Confidence            34444443 455678999999999999999865  89999999999887654

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=96.15  E-value=0.003  Score=64.91  Aligned_cols=49  Identities=18%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++.
T Consensus       124 ~i~~qi~~~-L~~lH~~~i~H~Dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~  172 (289)
T 3og7_A          124 DIARQTARG-MDYLHAKSIIHRDLKSNNIFLHED--NTVKIGDFGLATEKSR  172 (289)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEEETT--TEEEECCCC-------
T ss_pred             HHHHHHHHH-HHHHHhCCcccccCccceEEECCC--CCEEEccceecccccc
Confidence            344444443 455678999999999999999875  8999999999876543

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=96.15  E-value=0.0037  Score=65.09  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ++..++++. .-+...|++|.|.+|.||+++.+  |.+-|.|||+.+.++....
T Consensus       123 i~~qi~~al-~ylH~~~IiHRDlKp~NILl~~~--~~vKl~DFGla~~~~~~~~  173 (299)
T 4g31_A          123 IFLQIAEAV-EFLHSKGLMHRDLKPSNIFFTMD--DVVKVGDFGLVTAMDQDEE  173 (299)
T ss_dssp             HHHHHHHHH-HHHHHTTCCCCCCCGGGEEECTT--CCEEECCCCCC--------
T ss_pred             HHHHHHHHH-HHHHHCcCccccCcHHHeEECCC--CcEEEccCccceecCCCcc
Confidence            344444433 34568999999999999999865  8999999999998876543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=96.14  E-value=0.0073  Score=61.01  Aligned_cols=35  Identities=20%  Similarity=0.250  Sum_probs=28.5

Q ss_pred             cCccccCCCCCCeEEecCCCCCe-EEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~~~   74 (729)
                      .++.|+|.||+||++..   +++ ++|||+.++.-++..
T Consensus       183 ~~l~HgDl~~~Nil~~~---~~~~~lIDwe~a~~gd~~~  218 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKD---GKVSGFIDLGRSGRADKWY  218 (263)
T ss_dssp             EEEECSSCCTTSEEEET---TEEEEECCCTTCEEEEHHH
T ss_pred             ceEECCCCCcCcEEEEC---CcEEEEEEchhcccCCHHH
Confidence            56899999999999964   455 599999998777643

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=96.11  E-value=0.0048  Score=64.36  Aligned_cols=40  Identities=28%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +.-+...|++|.|.+|.|||++.+  |.+-|.|||+.+.+..
T Consensus       139 L~ylH~~~IiHRDlKp~NILl~~~--g~vKl~DFGla~~~~~  178 (304)
T 3ubd_A          139 LDHLHSLGIIYRDLKPENILLDEE--GHIKLTDFGLSKESID  178 (304)
T ss_dssp             HHHHHHTTCCCSSCCGGGEEECTT--SCEEEESSEEEEC---
T ss_pred             HHHHHHCCCcCCCCCHHHeEEcCC--CCEEecccccceeccC
Confidence            345578999999999999999865  8999999999986544

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=96.11  E-value=0.0036  Score=64.03  Aligned_cols=48  Identities=19%  Similarity=0.287  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++.
T Consensus       126 ~~~~i~~~-l~~lH~~~i~H~dikp~Nili~~~--~~~kl~Dfg~~~~~~~  173 (291)
T 1u46_A          126 YAVQVAEG-MGYLESKRFIHRDLAARNLLLATR--DLVKIGDFGLMRALPQ  173 (291)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEEEET--TEEEECCCTTCEECCC
T ss_pred             HHHHHHHH-HHHHHhCCcccCCCchheEEEcCC--CCEEEccccccccccc
Confidence            34444443 456678999999999999999875  7999999999988754

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=96.10  E-value=0.0036  Score=65.60  Aligned_cols=47  Identities=23%  Similarity=0.303  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...++
T Consensus       132 i~~qi~~a-l~~lH~~~ivH~Dikp~NIl~~~~--~~~kl~Dfg~~~~~~  178 (327)
T 3lxl_A          132 YSSQICKG-MEYLGSRRCVHRDLAARNILVESE--AHVKIADFGLAKLLP  178 (327)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEEEET--TEEEECCGGGCEECC
T ss_pred             HHHHHHHH-HHHHHhCCccCCCCChhhEEECCC--CCEEEcccccceecc
Confidence            33344443 455678999999999999999875  899999999998654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=96.08  E-value=0.004  Score=65.87  Aligned_cols=48  Identities=25%  Similarity=0.364  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCC-CeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH-RPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g-~lvllDfG~v~~l~~~   73 (729)
                      +..++++ +.-+...|++|.|.+|.|||++.+  | ++-|.|||+.+.+.+.
T Consensus       156 ~~qi~~a-L~ylH~~~IiHRDlKp~NILl~~~--g~~vKl~DFGla~~~~~~  204 (336)
T 4g3f_A          156 LGQALEG-LEYLHTRRILHGDVKADNVLLSSD--GSRAALCDFGHALCLQPD  204 (336)
T ss_dssp             HHHHHHH-HHHHHTTTEECSCCCGGGEEECTT--SCCEEECCCTTCEEC---
T ss_pred             HHHHHHH-HHHHHHCCceecccCHHHEEEeCC--CCEEEEeeCCCCeEccCC
Confidence            3344433 444578999999999999999875  5 6999999999988654

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=96.06  E-value=0.0041  Score=64.11  Aligned_cols=49  Identities=18%  Similarity=0.391  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+...+..
T Consensus       141 ~~~~qi~~~-l~~lH~~~ivH~Dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~  189 (298)
T 2zv2_A          141 FYFQDLIKG-IEYLHYQKIIHRDIKPSNLLVGED--GHIKIADFGVSNEFKG  189 (298)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--SCEEECCCTTCEECSS
T ss_pred             HHHHHHHHH-HHHHHHCCeeccCCCHHHEEECCC--CCEEEecCCCcccccc
Confidence            344455544 455678999999999999999865  8999999999887653

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=96.06  E-value=0.0044  Score=65.11  Aligned_cols=50  Identities=22%  Similarity=0.274  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+....
T Consensus       122 i~~qi~~a-L~~LH~~~ivH~Dikp~NIl~~~~--~~~kL~DfG~a~~~~~~~  171 (327)
T 3lzb_A          122 WCVQIAKG-MNYLEDRRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLGAEE  171 (327)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEEEET--TEEEECCTTC--------
T ss_pred             HHHHHHHH-HHHHhhCCCcCCCCCHHHEEEcCC--CCEEEccCcceeEccCcc
Confidence            44444443 455678999999999999999875  899999999998875543

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=96.04  E-value=0.0044  Score=63.65  Aligned_cols=48  Identities=17%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       129 i~~qi~~~-l~~LH~~~i~H~dikp~Nili~~~--~~~kl~Dfg~~~~~~~  176 (298)
T 3pls_A          129 FGLQVARG-MEYLAEQKFVHRDLAARNCMLDES--FTVKVADFGLARDILD  176 (298)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEECTT--CCEEECCTTSSCTTTT
T ss_pred             HHHHHHHH-HHHHHhCCcccCCCCcceEEEcCC--CcEEeCcCCCcccccC
Confidence            34444443 456678999999999999999764  8999999999987654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=95.99  E-value=0.0059  Score=63.44  Aligned_cols=49  Identities=22%  Similarity=0.482  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       121 ~~~qi~~~-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~a~~~~~~  169 (311)
T 3ork_A          121 VIADACQA-LNFSHQNGIIHRDVKPANIMISAT--NAVKVMDFGIARAIADS  169 (311)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEEETT--SCEEECCCSCC------
T ss_pred             HHHHHHHH-HHHHHHCCCCcCCCCHHHEEEcCC--CCEEEeeccCccccccc
Confidence            34444433 455678999999999999999865  89999999999877653

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=95.97  E-value=0.0054  Score=62.94  Aligned_cols=49  Identities=27%  Similarity=0.423  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       121 i~~qi~~~-l~~LH~~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~~~~  169 (303)
T 1zy4_A          121 LFRQILEA-LSYIHSQGIIHRDLKPMNIFIDES--RNVKIGDFGLAKNVHRS  169 (303)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--SCEEECCCCCCSCTTC-
T ss_pred             HHHHHHHH-HHHHHhCCeecccCCHHhEEEcCC--CCEEEeeCcchhhcccc
Confidence            44444444 355678999999999999999764  89999999999987654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=95.96  E-value=0.004  Score=67.33  Aligned_cols=50  Identities=18%  Similarity=0.337  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+.++++.|.|||+...++.
T Consensus       154 i~~qi~~a-L~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~  203 (387)
T 1kob_A          154 YMRQACEG-LKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  203 (387)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCC
Confidence            34444443 445578999999999999999865457899999999988754

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=95.94  E-value=0.0054  Score=61.86  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=35.3

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       117 l~~lH~~~i~H~dl~p~Nili~~~--~~~kl~dfg~~~~~~~~  157 (267)
T 3t9t_A          117 MAYLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDD  157 (267)
T ss_dssp             HHHHHHTTCCCSSCCGGGEEECGG--GCEEECCTTGGGGBCCH
T ss_pred             HHHHHhCCcccCCCchheEEECCC--CCEEEcccccccccccc
Confidence            456689999999999999999764  89999999999877653

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=95.92  E-value=0.0055  Score=62.32  Aligned_cols=50  Identities=20%  Similarity=0.370  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       116 ~~~~qi~~~-l~~lH~~~i~H~dl~p~Nili~~~--~~~kl~dfg~~~~~~~~  165 (278)
T 3cok_A          116 HFMHQIITG-MLYLHSHGILHRDLTLSNLLLTRN--MNIKIADFGLATQLKMP  165 (278)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSSCCGGGEEECTT--CCEEECCCTTCEECC--
T ss_pred             HHHHHHHHH-HHHHHHCCeecCCCCHHHEEEcCC--CCEEEEeecceeeccCC
Confidence            344444444 345678999999999999999864  89999999999988644

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=95.90  E-value=0.0048  Score=64.70  Aligned_cols=51  Identities=16%  Similarity=0.260  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+.++++.|.|||+...+.+
T Consensus       106 ~i~~qi~~a-l~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~  156 (321)
T 1tki_A          106 SYVHQVCEA-LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             HHHHHHHHH-HHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCC
Confidence            344444443 345678999999999999999874458999999999987753

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=95.88  E-value=0.0069  Score=61.49  Aligned_cols=61  Identities=15%  Similarity=0.091  Sum_probs=38.0

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCC
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQALAKMFFAAAEGDHVALLSAFAEMGL  102 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l~~L~~a~~~~D~~~~~~~l~~lG~  102 (729)
                      .++|+|.|||||+++.+  +.+++|||++++.=++..=.  +-++..+.....+.....+...|.
T Consensus       194 ~l~HGDl~~~Nil~~~~--~~~~viDwe~a~~gdp~~Dl--a~~~~~~~~~~~~~~~~fl~~Yg~  254 (272)
T 4gkh_A          194 VVTHGDFSLDNLIFDEG--KLIGCIDVGRVGIADRYQDL--AILWNCLGEFSPSLQKRLFQKYGI  254 (272)
T ss_dssp             EEECSCCCTTSEEEETT--EEEEECCCTTCEEEETHHHH--HHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred             EEEcCCCCCCeEEEECC--eEEEEEECcccccCCHHHHH--HHHHHHhhhcCHHHHHHHHHHcCC
Confidence            47999999999999753  44579999999877665433  223333333344433333444443

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=95.87  E-value=0.0048  Score=63.20  Aligned_cols=47  Identities=23%  Similarity=0.412  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       115 ~~~qi~~~-l~~lH~~~i~H~dlkp~Nili~~~--~~~kl~Dfg~~~~~~  161 (287)
T 1u59_A          115 LLHQVSMG-MKYLEEKNFVHRDLAARNVLLVNR--HYAKISDFGLSKALG  161 (287)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEEEET--TEEEECCCTTCEECT
T ss_pred             HHHHHHHH-HHHHHHCCEeeCCCchheEEEcCC--CCEEECcccceeeec
Confidence            34444433 456678999999999999999875  899999999998764

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=95.85  E-value=0.0058  Score=65.61  Aligned_cols=49  Identities=20%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       152 i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~a~~~~~~  200 (373)
T 2qol_A          152 MLRGIASG-MKYLSDMGYVHRDLAARNILINSN--LVCKVSDFGLGRVLEDD  200 (373)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--CCEEECCC---------
T ss_pred             HHHHHHHH-HHHHHHCCeeCCCCCcceEEEcCC--CCEEECcCccccccccC
Confidence            34444433 455678999999999999999764  89999999999877654

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=95.82  E-value=0.009  Score=61.82  Aligned_cols=48  Identities=25%  Similarity=0.393  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +.-+...|++|+|.+|.||+++.+  +++.|.|||+...++
T Consensus       124 ~i~~qi~~a-l~~lH~~~ivH~Dlkp~Nil~~~~--~~~kl~Dfg~a~~~~  171 (308)
T 3g33_A          124 DLMRQFLRG-LDFLHANCIVHRDLKPENILVTSG--GTVKLADFGLARIYS  171 (308)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCTTTEEECTT--SCEEECSCSCTTTST
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCCHHHEEEcCC--CCEEEeeCccccccC
Confidence            344444443 456678999999999999999865  899999999997664

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=95.81  E-value=0.0053  Score=65.95  Aligned_cols=48  Identities=15%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       198 ~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~--~~~kL~DFG~a~~~~~~  245 (373)
T 3c1x_A          198 GLQVAKG-MKFLASKKFVHRDLAARNCMLDEK--FTVKVADFGLARDMYDK  245 (373)
T ss_dssp             HHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--CCEEECCC---------
T ss_pred             HHHHHHH-HHHHHHCCEecCccchheEEECCC--CCEEEeecccccccccc
Confidence            3344433 456678999999999999999764  89999999999877543

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=95.81  E-value=0.0064  Score=61.91  Aligned_cols=51  Identities=22%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|+|||+....+...
T Consensus       113 ~~~~qi~~~-l~~LH~~~i~H~dlkp~Nili~~~--~~~~l~Dfg~~~~~~~~~  163 (279)
T 3fdn_A          113 TYITELANA-LSYCHSKRVIHRDIKPENLLLGSA--GELKIADFGWSVHAPSSR  163 (279)
T ss_dssp             HHHHHHHHH-HHHHHTTTCEECCCCGGGEEECTT--SCEEECSCCEESCC----
T ss_pred             HHHHHHHHH-HHHHHhCCEecccCChHhEEEcCC--CCEEEEeccccccCCccc
Confidence            344455444 455678999999999999999764  899999999987666543

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=95.80  E-value=0.0054  Score=66.83  Aligned_cols=48  Identities=31%  Similarity=0.443  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||++..+..
T Consensus       173 ~~~qi~~a-L~~LH~~givHrDLKp~NILl~~~--g~ikL~DFG~a~~~~~  220 (410)
T 3v8s_A          173 YTAEVVLA-LDAIHSMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNK  220 (410)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCeEeccCCHHHeeECCC--CCEEEeccceeEeecc
Confidence            44444443 566778999999999999999765  8999999999987764

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=95.77  E-value=0.0068  Score=61.67  Aligned_cols=48  Identities=33%  Similarity=0.410  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+....+.
T Consensus       122 ~~~~i~~~-l~~lH~~~i~H~dlkp~Nil~~~~--~~~~l~Dfg~~~~~~~  169 (278)
T 1byg_A          122 FSLDVCEA-MEYLEGNNFVHRDLAARNVLVSED--NVAKVSDFGLTKEASS  169 (278)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEECTT--SCEEECCCCC------
T ss_pred             HHHHHHHH-HHHHHhCCccccCCCcceEEEeCC--CcEEEeeccccccccc
Confidence            34444433 455678999999999999999864  8999999999876543

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=95.77  E-value=0.0055  Score=65.57  Aligned_cols=49  Identities=27%  Similarity=0.427  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+ .+++.|.|||+.+.+.+
T Consensus       122 ~~~qll~a-l~ylH~~gIiHRDiKPeNiLl~~~-~~~~kl~DFGla~~~~~  170 (361)
T 4f9c_A          122 YMLNLFKA-LKRIHQFGIVHRDVKPSNFLYNRR-LKKYALVDFGLAQGTHD  170 (361)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEEETT-TTEEEECCCTTCEECTT
T ss_pred             HHHHHHHH-HHHHHHCCeEeCcCCHHHeEEeCC-CCeEEECcCCCCcccCC
Confidence            34444443 334568999999999999999865 47899999999976653

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=95.75  E-value=0.011  Score=62.05  Aligned_cols=39  Identities=26%  Similarity=0.397  Sum_probs=31.2

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..+...|++|+|.+|.||+++.+  |++.|.|||++....
T Consensus       134 l~~lH~~~ivH~Dlkp~Nill~~~--~~~kl~Dfg~~~~~~  172 (327)
T 3a62_A          134 LGHLHQKGIIYRDLKPENIMLNHQ--GHVKLTDFGLCKESI  172 (327)
T ss_dssp             HHHHHHTTCCCCCCCTTTEEECTT--SCEEECCCSCC----
T ss_pred             HHHHHhCCEEcccCCHHHeEECCC--CcEEEEeCCcccccc
Confidence            455678999999999999999865  899999999987543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=95.74  E-value=0.009  Score=62.26  Aligned_cols=49  Identities=22%  Similarity=0.404  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       134 i~~qi~~~-l~~lH~~~ivH~dlkp~NIl~~~~--~~~kl~Dfg~~~~~~~~  182 (326)
T 2x7f_A          134 ICREILRG-LSHLHQHKVIHRDIKGQNVLLTEN--AEVKLVDFGVSAQLDRT  182 (326)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCSGGGEEECTT--CCEEECCCTTTC-----
T ss_pred             HHHHHHHH-HHHHHHCCccccCCcHHHEEEcCC--CCEEEeeCcCceecCcC
Confidence            34444433 455678999999999999999864  89999999999877643

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=95.72  E-value=0.0078  Score=62.82  Aligned_cols=50  Identities=14%  Similarity=0.227  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..+++.. .-+...|++|+|.+|.|||++.+  +.+-|.|||+.+.++..
T Consensus       136 ~i~~qia~gL-~yLH~~~IiHRDlKp~NILl~~~--~~~Ki~DFGla~~~~~~  185 (307)
T 3omv_A          136 DIARQTAQGM-DYLHAKNIIHRDMKSNNIFLHEG--LTVKIGDFGLATVKSRW  185 (307)
T ss_dssp             HHHHHHHHHH-HHHHHTTCBCSCCCSSSEEEETT--EEEEECCCSSCBC----
T ss_pred             HHHHHHHHHH-HHHHHCCccCCccCHHHEEECCC--CcEEEeeccCceecccC
Confidence            3445554443 33468899999999999999865  89999999999877543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=95.71  E-value=0.0071  Score=65.97  Aligned_cols=47  Identities=30%  Similarity=0.402  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||++..+..
T Consensus       168 ~~qi~~a-L~~LH~~giiHrDLKp~NILld~~--g~vkL~DFGla~~~~~  214 (412)
T 2vd5_A          168 LAEIVMA-IDSVHRLGYVHRDIKPDNILLDRC--GHIRLADFGSCLKLRA  214 (412)
T ss_dssp             HHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECCT
T ss_pred             HHHHHHH-HHHHHHCCeeecccCHHHeeecCC--CCEEEeechhheeccC
Confidence            3344333 455678999999999999999865  8999999999987764

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=95.70  E-value=0.0057  Score=64.31  Aligned_cols=51  Identities=20%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHH-HcCccccCCCCCCeEEecCCC------------------CCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIY-VDGFFNGDPHPGNFLVSKDPP------------------HRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif-~~GffHaDPHPGNilv~~d~~------------------g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. .-+. ..|++|+|.+|.||++..++.                  .++.|.|||+.+.+..
T Consensus       165 ~i~~qi~~aL-~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~  234 (336)
T 2vuw_A          165 SILHQLTASL-AVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD  234 (336)
T ss_dssp             HHHHHHHHHH-HHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET
T ss_pred             HHHHHHHHHH-HHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC
Confidence            3444444433 3445 789999999999999997620                  1899999999998764

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=95.66  E-value=0.0074  Score=64.94  Aligned_cols=48  Identities=23%  Similarity=0.456  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ ++-+...|++|+|.+|.||+++.+  +.+.|.|||+.+.+.
T Consensus       113 ~i~~qi~~~-L~~LH~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~~~  160 (388)
T 3oz6_A          113 YVVYQLIKV-IKYLHSGGLLHRDMKPSNILLNAE--CHVKVADFGLSRSFV  160 (388)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEESS
T ss_pred             HHHHHHHHH-HHHHHhCCEEeCCCCHHHeEEcCC--CCEEecCCccccccc
Confidence            344455544 456678999999999999999865  899999999998764

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=95.66  E-value=0.007  Score=62.11  Aligned_cols=51  Identities=20%  Similarity=0.360  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC---CCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP---PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~---~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++   .+++.|.|||+...+..
T Consensus       110 ~i~~qi~~~-l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~  163 (298)
T 1csn_A          110 MAAKQMLAR-VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  163 (298)
T ss_dssp             HHHHHHHHH-HHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             HHHHHHHHH-HHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccc
Confidence            344444443 3556789999999999999998641   12399999999986654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=95.64  E-value=0.0096  Score=62.02  Aligned_cols=50  Identities=22%  Similarity=0.396  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       141 ~i~~qi~~a-l~~LH~~~ivH~Dikp~NIli~~~--~~~kl~Dfg~a~~~~~~  190 (323)
T 3qup_A          141 RFMVDIACG-MEYLSSRNFIHRDLAARNCMLAED--MTVCVADFGLSRKIYSG  190 (323)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCSGGGEEECTT--SCEEECCCCC-------
T ss_pred             HHHHHHHHH-HHHHHcCCcccCCCCcceEEEcCC--CCEEEeecccccccccc
Confidence            344444443 445678999999999999999864  89999999999876543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=95.62  E-value=0.0089  Score=62.91  Aligned_cols=48  Identities=19%  Similarity=0.310  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++
T Consensus       118 ~~~~qi~~a-l~~lH~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~~~  165 (328)
T 3fe3_A          118 SKFRQIVSA-VQYCHQKRIVHRDLKAENLLLDAD--MNIKIADFGFSNEFT  165 (328)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--SCEEECSTTCCGGGS
T ss_pred             HHHHHHHHH-HHHHHHCCEeccCCCHHHEEEcCC--CCEEEeeccCceecC
Confidence            344444443 455678999999999999999764  899999999987654

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=95.62  E-value=0.0086  Score=62.44  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=34.7

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..+...|++|+|.+|.||++..+  +++.|.|||+...++.
T Consensus       147 l~~LH~~~ivH~Dikp~Nil~~~~--~~~kl~Dfg~a~~~~~  186 (318)
T 3lxp_A          147 MAYLHAQHYIHRDLAARNVLLDND--RLVKIGDFGLAKAVPE  186 (318)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTT--CCEEECCGGGCEECCT
T ss_pred             HHHHHhCCccCCCCchheEEEcCC--CCEEECCccccccccc
Confidence            456678999999999999999864  8999999999987654

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=95.61  E-value=0.0079  Score=62.03  Aligned_cols=48  Identities=23%  Similarity=0.372  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       124 ~~~qi~~~-l~~lH~~~i~H~dl~p~Nil~~~~--~~~kl~Dfg~~~~~~~  171 (303)
T 3a7i_A          124 ILREILKG-LDYLHSEKKIHRDIKAANVLLSEH--GEVKLADFGVAGQLTD  171 (303)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECBT
T ss_pred             HHHHHHHH-HHHHHHCCCccCCCChheEEECCC--CCEEEeecccceecCc
Confidence            34444443 456678999999999999999864  8999999999977654

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=95.60  E-value=0.0083  Score=62.92  Aligned_cols=49  Identities=24%  Similarity=0.328  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       129 ~~~qi~~~-l~~LH~~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~  177 (331)
T 4aaa_A          129 YLFQIING-IGFCHSHNIIHRDIKPENILVSQS--GVVKLCDFGFARTLAAP  177 (331)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEECCCTTC------
T ss_pred             HHHHHHHH-HHHHHHCCEEccCcChheEEEcCC--CcEEEEeCCCceeecCC
Confidence            34444443 455678999999999999999865  89999999999876543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=95.60  E-value=0.0076  Score=61.30  Aligned_cols=48  Identities=23%  Similarity=0.353  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       114 i~~qi~~~-l~~lH~~~i~H~dikp~Nil~~~~--~~~kl~Dfg~~~~~~~  161 (279)
T 1qpc_A          114 MAAQIAEG-MAFIEERNYIHRDLRAANILVSDT--LSCKIADFGLARLIED  161 (279)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--SCEEECCCTTCEECSS
T ss_pred             HHHHHHHH-HHHHHHCCeeccCCCHhhEEEcCC--CCEEECCCcccccccC
Confidence            34444433 455678999999999999999764  8999999999987653

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=95.59  E-value=0.0074  Score=64.49  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++. .-+...|++|+|.+|.||+++.+  |++.|.|||+...++
T Consensus       198 ~i~~qi~~aL-~~LH~~~ivHrDikp~NIll~~~--~~~kL~DFG~a~~~~  245 (371)
T 3q60_A          198 ILTAQLIRLA-ANLQSKGLVHGHFTPDNLFIMPD--GRLMLGDVSALWKVG  245 (371)
T ss_dssp             HHHHHHHHHH-HHHHHTTEEETTCSGGGEEECTT--SCEEECCGGGEEETT
T ss_pred             HHHHHHHHHH-HHHHHCCCccCcCCHHHEEECCC--CCEEEEecceeeecC
Confidence            4445565554 45578999999999999999865  899999999998765

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=95.57  E-value=0.0098  Score=62.32  Aligned_cols=49  Identities=20%  Similarity=0.327  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       108 ~~i~~qi~~a-L~~LH~~givH~Dlkp~NIll~~~--~~~kl~Dfg~a~~~~  156 (323)
T 3tki_A          108 QRFFHQLMAG-VVYLHGIGITHRDIKPENLLLDER--DNLKISDFGLATVFR  156 (323)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--CCEEECCCTTCEECE
T ss_pred             HHHHHHHHHH-HHHHHHCCccccccchHHEEEeCC--CCEEEEEeeccceec
Confidence            4455555554 445678999999999999999864  899999999997653

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=95.57  E-value=0.012  Score=62.74  Aligned_cols=47  Identities=26%  Similarity=0.267  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+++...
T Consensus       129 ~~~qi~~a-L~~LH~~givHrDlkp~NILl~~~--g~ikL~DFG~a~~~~  175 (353)
T 3txo_A          129 YAAEIISA-LMFLHDKGIIYRDLKLDNVLLDHE--GHCKLADFGMCKEGI  175 (353)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCCTTCBCSC
T ss_pred             HHHHHHHH-HHHHHHCCCcccCCCHHHEEECCC--CCEEEccccceeecc
Confidence            34444433 445678999999999999999865  899999999998643

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=95.56  E-value=0.0088  Score=62.30  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=40.9

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHc----------CccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           13 EAFGVNKQKVVEEITRAYAHQIYVD----------GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        13 ~~~~~d~~~la~~l~~~~~~qif~~----------GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .......+.+.+...++.-..-+.|          |++|+|.+|.|||++.+  +.+-|-|||+.+.++.
T Consensus        93 ~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~--~~~Ki~DFGla~~~~~  160 (303)
T 3hmm_A           93 NRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKN--GTCCIADLGLAVRHDS  160 (303)
T ss_dssp             HHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTT--SCEEECCCTTCEEEET
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCC--CCEEEEeCCCCccccC
Confidence            3445555555444444443333433          89999999999999865  8999999999876654

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=95.55  E-value=0.0078  Score=62.60  Aligned_cols=50  Identities=24%  Similarity=0.342  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       161 ~i~~qi~~a-L~~LH~~~ivH~Dikp~NIll~~~--~~~kl~DFG~a~~~~~~  210 (311)
T 3p1a_A          161 GYLRDTLLA-LAHLHSQGLVHLDVKPANIFLGPR--GRCKLGDFGLLVELGTA  210 (311)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEECGG--GCEEECCCTTCEECC--
T ss_pred             HHHHHHHHH-HHHHHHCCEecCCCCHHHEEECCC--CCEEEccceeeeecccC
Confidence            344444443 445678999999999999999865  89999999998887654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=95.54  E-value=0.011  Score=59.95  Aligned_cols=48  Identities=19%  Similarity=0.315  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+.
T Consensus       109 ~~~~~i~~~-l~~lH~~~i~H~dl~p~Nil~~~~--~~~kl~dfg~~~~~~  156 (276)
T 2yex_A          109 RFFHQLMAG-VVYLHGIGITHRDIKPENLLLDER--DNLKISDFGLATVFR  156 (276)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--CCEEECCCTTCEECE
T ss_pred             HHHHHHHHH-HHHHHhCCeeccCCChHHEEEccC--CCEEEeeCCCccccC
Confidence            344444443 455678999999999999999864  899999999997664

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=95.54  E-value=0.0056  Score=64.20  Aligned_cols=47  Identities=23%  Similarity=0.296  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       122 ~~~qi~~~-l~~LH~~~ivH~Dikp~NIll~~~--~~~kl~Dfg~a~~~~  168 (327)
T 3poz_A          122 WCVQIAKG-MNYLEDRRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLG  168 (327)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEEEET--TEEEECCTTHHHHHT
T ss_pred             HHHHHHHH-HHHHhhCCeeCCCCChheEEECCC--CCEEEccCcceeEcc
Confidence            44444443 455678999999999999999875  899999999986654

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=95.53  E-value=0.0098  Score=64.50  Aligned_cols=49  Identities=20%  Similarity=0.363  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+.- -+...|++|+|.+|.||+++.+  |.+-+.|||+.+.+..
T Consensus       162 ~~~~qil~al~-ylH~~~iiHRDlKP~NIl~~~~--~~~Ki~DFGla~~~~~  210 (398)
T 4b99_A          162 YFLYQLLRGLK-YMHSAQVIHRDLKPSNLLVNEN--CELKIGDFGMARGLCT  210 (398)
T ss_dssp             HHHHHHHHHHH-HHHHTTCBCCCCCGGGEEECTT--CCEEECCCTTCBCC--
T ss_pred             HHHHHHHHHHH-HHHHCcCcCCCcCccccccCCC--CCEEEeecceeeeccc
Confidence            34445554443 3568999999999999999865  8999999999988754

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=95.53  E-value=0.0091  Score=66.17  Aligned_cols=48  Identities=23%  Similarity=0.423  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ ++-+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       168 ~~~~qil~a-L~~lH~~~iiHrDlkp~NIll~~~--~~~kl~DFG~a~~~~  215 (464)
T 3ttj_A          168 YLLYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAG  215 (464)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEECCCCCC----
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCChHhEEEeCC--CCEEEEEEEeeeecC
Confidence            345555554 456678999999999999999865  899999999987543

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=95.53  E-value=0.0093  Score=61.20  Aligned_cols=47  Identities=17%  Similarity=0.342  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++
T Consensus       106 ~~~ql~~~-l~~lH~~~ivH~dikp~Nil~~~~--~~~kl~Dfg~~~~~~  152 (292)
T 3o0g_A          106 FLFQLLKG-LGFCHSRNVLHRDLKPQNLLINRN--GELKLANFGLARAFG  152 (292)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECC
T ss_pred             HHHHHHHH-HHHHHhCCeecCCCCHHHEEEcCC--CCEEEeecccceecC
Confidence            44444443 455678999999999999999865  899999999997764

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=95.52  E-value=0.0098  Score=63.81  Aligned_cols=39  Identities=18%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..+...|++|+|.+|.||++..+  +.+.|.|||+.....
T Consensus       226 l~~LH~~~ivHrDlkp~Nil~~~~--~~~kl~DfG~s~~~~  264 (377)
T 3cbl_A          226 MEYLESKCCIHRDLAARNCLVTEK--NVLKISDFGMSREEA  264 (377)
T ss_dssp             HHHHHHTTEECSCCSGGGEEECTT--CCEEECCGGGCEECT
T ss_pred             HHHHHHCCcCCcccCHHHEEEcCC--CcEEECcCCCceecC
Confidence            455678999999999999999864  899999999987543

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=95.51  E-value=0.013  Score=59.85  Aligned_cols=50  Identities=18%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCC--------eEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHR--------PILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~--------lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+  +.        +.|.|||+...+...
T Consensus       117 ~i~~qi~~~-L~~LH~~~ivH~Dlkp~NIll~~~--~~~~~~~~~~~kl~Dfg~~~~~~~~  174 (289)
T 4fvq_A          117 EVAKQLAAA-MHFLEENTLIHGNVCAKNILLIRE--EDRKTGNPPFIKLSDPGISITVLPK  174 (289)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCCCCCGGGEEEEEC--CBGGGTBCCEEEECCCCSCTTTSCH
T ss_pred             HHHHHHHHH-HHHHhhCCeECCCcCcceEEEecC--CcccccccceeeeccCcccccccCc
Confidence            344444443 455678999999999999999876  44        999999999877654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=95.51  E-value=0.0073  Score=64.12  Aligned_cols=32  Identities=31%  Similarity=0.514  Sum_probs=28.4

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .|++|+|.+|.||+++.+  +++.|.|||+...+
T Consensus       151 ~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~  182 (360)
T 3eqc_A          151 HKIMHRDVKPSNILVNSR--GEIKLCDFGVSGQL  182 (360)
T ss_dssp             HCCCCSCCSGGGEEECTT--CCEEECCCCCCHHH
T ss_pred             CCEEcCCccHHHEEECCC--CCEEEEECCCCccc
Confidence            599999999999999865  89999999998554

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=95.51  E-value=0.0098  Score=60.71  Aligned_cols=47  Identities=26%  Similarity=0.432  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...++
T Consensus       116 i~~~i~~~-l~~lH~~~i~H~dikp~Nil~~~~--~~~~l~Dfg~~~~~~  162 (288)
T 3kfa_A          116 MATQISSA-MEYLEKKNFIHRDLAARNCLVGEN--HLVKVADFGLSRLMT  162 (288)
T ss_dssp             HHHHHHHH-HHHHHHHTCCCSCCSGGGEEECGG--GCEEECCCCGGGTSC
T ss_pred             HHHHHHHH-HHHHHHCCccCCCCCcceEEEcCC--CCEEEccCccceecc
Confidence            33444443 455678999999999999999765  899999999987654

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=95.50  E-value=0.007  Score=68.44  Aligned_cols=40  Identities=23%  Similarity=0.355  Sum_probs=34.2

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +.-+...|++|+|.+|.||+++.+  |.+.|.|||++..+..
T Consensus       302 L~~LH~~gIvHrDLKP~NILl~~~--g~vkL~DFGla~~~~~  341 (543)
T 3c4z_A          302 LEHLHQRNIIYRDLKPENVLLDDD--GNVRISDLGLAVELKA  341 (543)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTT--SCEEECCCTTCEECCT
T ss_pred             HHHHHHcCCcccCCChHHEEEeCC--CCEEEeecceeeeccC
Confidence            344567999999999999999865  8999999999988754

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=95.49  E-value=0.011  Score=62.17  Aligned_cols=48  Identities=21%  Similarity=0.342  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       145 ~i~~qi~~a-L~~LH~~~ivH~dlkp~NIl~~~~--~~~kl~Dfg~~~~~~  192 (335)
T 2owb_A          145 YYLRQIVLG-CQYLHRNRVIHRDLKLGNLFLNED--LEVKIGDFGLATKVE  192 (335)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCCGGGEEECTT--CCEEECCCTTCEECC
T ss_pred             HHHHHHHHH-HHHHHHCCCEecCCCchhEEEcCC--CCEEEeeccCceecc
Confidence            344444443 455678999999999999999865  899999999998764

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=95.49  E-value=0.0085  Score=63.82  Aligned_cols=50  Identities=20%  Similarity=0.319  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEec---------CCCCCeEEEeccccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSK---------DPPHRPILLDFGLTKKL   70 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~---------d~~g~lvllDfG~v~~l   70 (729)
                      ..++..++++ +.-+...|++|+|.+|.||+++.         +.++.+.|.|||+...+
T Consensus       175 ~~i~~qi~~~-L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~  233 (365)
T 3e7e_A          175 ISFAMRMLYM-IEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDM  233 (365)
T ss_dssp             HHHHHHHHHH-HHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEG
T ss_pred             HHHHHHHHHH-HHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhh
Confidence            3344444443 34567899999999999999976         11379999999999654

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=95.48  E-value=0.013  Score=61.00  Aligned_cols=48  Identities=23%  Similarity=0.385  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       143 i~~qi~~~-l~~lH~~~i~H~dikp~NIli~~~--~~~kl~Dfg~~~~~~~  190 (322)
T 1p4o_A          143 MAGEIADG-MAYLNANKFVHRDLAARNCMVAED--FTVKIGDFGMTRDIYE  190 (322)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCSCCSGGGEEECTT--CCEEECCTTCCCGGGG
T ss_pred             HHHHHHHH-HHHHHHCCCccCCCccceEEEcCC--CeEEECcCcccccccc
Confidence            44444444 455678999999999999999864  8999999999886644

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=95.48  E-value=0.011  Score=62.64  Aligned_cols=46  Identities=24%  Similarity=0.290  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |++.|.|||+++..
T Consensus       115 ~~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~--g~~kL~DFG~a~~~  160 (345)
T 3a8x_A          115 YSAEISLA-LNYLHERGIIYRDLKLDNVLLDSE--GHIKLTDYGMCKEG  160 (345)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCGGGCBCS
T ss_pred             HHHHHHHH-HHHHHHCCceecCCCHHHEEECCC--CCEEEEeccccccc
Confidence            34444443 455678999999999999999865  89999999998763

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=95.48  E-value=0.011  Score=62.60  Aligned_cols=52  Identities=19%  Similarity=0.352  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++ +..+...|++|+|.+|.||+++.++++++.|.|||+...+..
T Consensus       154 ~~i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~  205 (345)
T 2v62_A          154 LQLGIRMLDV-LEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCP  205 (345)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSG
T ss_pred             HHHHHHHHHH-HHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceeccc
Confidence            3444555544 455678999999999999999876445999999999987754

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=95.47  E-value=0.01  Score=63.17  Aligned_cols=48  Identities=29%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       165 ~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kl~DfG~a~~~~~~  212 (355)
T 1vzo_A          165 VGEIVLA-LEHLHKLGIIYRDIKLENILLDSN--GHVVLTDFGLSKEFVAD  212 (355)
T ss_dssp             HHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEESCSSEEEECCGG
T ss_pred             HHHHHHH-HHHHHHCCcccCCCCHHHEEECCC--CcEEEeeCCCCeecccC
Confidence            3344433 455678999999999999999864  89999999999877543

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=95.47  E-value=0.013  Score=61.87  Aligned_cols=49  Identities=20%  Similarity=0.349  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+.+
T Consensus       112 ~i~~qi~~a-L~~LH~~givH~Dlkp~NIll~~~--~~~kl~DFG~s~~~~~  160 (336)
T 3h4j_B          112 RFFQQIICA-IEYCHRHKIVHRDLKPENLLLDDN--LNVKIADFGLSNIMTD  160 (336)
T ss_dssp             HHHHHHHHH-HHHHHHHTCCCCCCSTTTEEECTT--CCEEECCSSCTBTTTT
T ss_pred             HHHHHHHHH-HHHHHHCCeEecCCchhhEEEcCC--CCEEEEEeccceeccC
Confidence            344444443 455678899999999999999864  8999999999876543

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=95.47  E-value=0.013  Score=62.31  Aligned_cols=46  Identities=20%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||++...
T Consensus       126 ~~~qi~~a-L~~LH~~givHrDlkp~NIll~~~--g~vkL~DFG~a~~~  171 (353)
T 2i0e_A          126 YAAEIAIG-LFFLQSKGIIYRDLKLDNVMLDSE--GHIKIADFGMCKEN  171 (353)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCCTTCBCC
T ss_pred             HHHHHHHH-HHHHHHCCEEeccCCHHHEEEcCC--CcEEEEeCCccccc
Confidence            34444443 445678999999999999999865  89999999998764

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=95.46  E-value=0.015  Score=61.89  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|+|||+...+...
T Consensus       133 i~~qi~~a-L~~LH~~~ivH~Dikp~NIl~~~~--~~~kl~Dfg~a~~~~~~  181 (364)
T 3qyz_A          133 FLYQILRG-LKYIHSANVLHRDLKPSNLLLNTT--CDLKICDFGLARVADPD  181 (364)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEECCGG
T ss_pred             HHHHHHHH-HHHHHHCCeecCCCChHhEEECCC--CCEEEEeCcceEecCCC
Confidence            44444443 455678999999999999999864  89999999999876543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=95.45  E-value=0.011  Score=62.37  Aligned_cols=50  Identities=20%  Similarity=0.276  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ...++..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+...+.
T Consensus       114 ~~~~~~qi~~~-l~~lH~~~ivH~Dlkp~Nil~~~~--~~~kl~Dfg~a~~~~  163 (346)
T 1ua2_A          114 IKAYMLMTLQG-LEYLHQHWILHRDLKPNNLLLDEN--GVLKLADFGLAKSFG  163 (346)
T ss_dssp             HHHHHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--CCEEECCCGGGSTTT
T ss_pred             HHHHHHHHHHH-HHHHHHCCEECCCCCHHHEEEcCC--CCEEEEecccceecc
Confidence            34556666553 556689999999999999999865  899999999998764

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=95.45  E-value=0.0098  Score=62.86  Aligned_cols=49  Identities=24%  Similarity=0.397  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++
T Consensus       127 ~~i~~qi~~~-l~~LH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~a~~~~  175 (351)
T 3mi9_A          127 KRVMQMLLNG-LYYIHRNKILHRDMKAANVLITRD--GVLKLADFGLARAFS  175 (351)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECC
T ss_pred             HHHHHHHHHH-HHHHHHCCeeCCCCCHHHEEEcCC--CCEEEccchhccccc
Confidence            3445555544 455678999999999999999865  899999999987664

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=95.45  E-value=0.014  Score=60.64  Aligned_cols=49  Identities=24%  Similarity=0.334  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+...++..
T Consensus       125 ~~~qi~~~-l~~lH~~gi~H~dlkp~Nili~~~--~~~kl~Dfg~~~~~~~~  173 (326)
T 1blx_A          125 MMFQLLRG-LDFLHSHRVVHRDLKPQNILVTSS--GQIKLADFGLARIYSFQ  173 (326)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--CCEEECSCCSCCCCCGG
T ss_pred             HHHHHHHH-HHHHHHCCceeccCCHHHeEEcCC--CCEEEecCcccccccCC
Confidence            34444433 455678999999999999999865  89999999999887643

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=95.44  E-value=0.011  Score=63.29  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       208 i~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~~~~  255 (370)
T 2psq_A          208 CTYQLARG-MEYLASQKCIHRDLAARNVLVTEN--NVMKIADFGLARDINN  255 (370)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEECTT--CCEEECCCSSCEETTC
T ss_pred             HHHHHHHH-HHHHHhCCeeccccchhhEEECCC--CCEEEccccCCcccCc
Confidence            44444443 345678999999999999999865  8999999999986653

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=95.44  E-value=0.011  Score=62.56  Aligned_cols=50  Identities=28%  Similarity=0.481  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+....+..
T Consensus       130 ~i~~qi~~a-l~~LH~~~ivH~dlkp~NIl~~~~--~~~kl~Dfg~~~~~~~~  179 (353)
T 3coi_A          130 YLVYQMLKG-LKYIHSAGVVHRDLKPGNLAVNED--CELKILDFGLARHADAE  179 (353)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSSCCGGGEEECTT--CCEEECSTTCTTC----
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCCHHHEeECCC--CcEEEeecccccCCCCC
Confidence            344444443 455678999999999999999864  89999999999876543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=95.43  E-value=0.011  Score=62.72  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       146 ~~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~--g~~kL~DFg~a~~~~~  193 (350)
T 1rdq_E          146 YAAQIVLT-FEYLHSLDLIYRDLKPENLLIDQQ--GYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECSS
T ss_pred             HHHHHHHH-HHHHHHCCcccccCccceEEECCC--CCEEEcccccceeccC
Confidence            44444443 455678999999999999999764  8999999999987754

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=95.43  E-value=0.01  Score=61.76  Aligned_cols=47  Identities=23%  Similarity=0.405  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       124 ~~~qi~~~-l~~LH~~~ivH~Dikp~NIl~~~~--~~~kl~Dfg~a~~~~  170 (311)
T 3niz_A          124 YLYQLLRG-VAHCHQHRILHRDLKPQNLLINSD--GALKLADFGLARAFG  170 (311)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEETT
T ss_pred             HHHHHHHH-HHHHHHCCcccCCCchHhEEECCC--CCEEEccCcCceecC
Confidence            34444443 455678999999999999999865  899999999998764

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=95.43  E-value=0.011  Score=62.04  Aligned_cols=47  Identities=23%  Similarity=0.362  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||+...++.
T Consensus       112 ~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~--g~~kL~Dfg~a~~~~~  158 (318)
T 1fot_A          112 AAEVCLA-LEYLHSKDIIYRDLKPENILLDKN--GHIKITDFGFAKYVPD  158 (318)
T ss_dssp             HHHHHHH-HHHHHTTTEECCCCCGGGEEECTT--SCEEECCCSSCEECSS
T ss_pred             HHHHHHH-HHHHHHCCccccCCChheEEEcCC--CCEEEeecCcceecCC
Confidence            3334433 445678999999999999999764  8999999999987654

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=95.42  E-value=0.013  Score=60.84  Aligned_cols=50  Identities=30%  Similarity=0.436  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       138 ~i~~qi~~~-l~~lH~~~i~H~dlkp~NIl~~~~--~~~kl~Dfg~~~~~~~~  187 (309)
T 2h34_A          138 AIVRQIGSA-LDAAHAAGATHRDVKPENILVSAD--DFAYLVDFGIASATTDE  187 (309)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--SCEEECSCCC-------
T ss_pred             HHHHHHHHH-HHHHHHCcCCcCCCChHHEEEcCC--CCEEEecCccCcccccc
Confidence            344444443 455678999999999999999865  89999999998777654

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=95.41  E-value=0.015  Score=61.25  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+....
T Consensus       117 ~~~qi~~~-L~~LH~~~ivH~Dlkp~Nil~~~~--~~~kl~Dfg~a~~~~~~~  166 (353)
T 2b9h_A          117 FIYQTLRA-VKVLHGSNVIHRDLKPSNLLINSN--CDLKVCDFGLARIIDESA  166 (353)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEECTT--CCEEECCCTTCEECC---
T ss_pred             HHHHHHHH-HHHHHHCCeecCCCCHHHeEEcCC--CcEEEEeccccccccccc
Confidence            34444443 455678999999999999999864  899999999999887654

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=95.40  E-value=0.012  Score=59.80  Aligned_cols=49  Identities=27%  Similarity=0.451  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       126 ~i~~qi~~~-l~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~  174 (284)
T 2a19_B          126 ELFEQITKG-VDYIHSKKLINRDLKPSNIFLVDT--KQVKIGDFGLVTSLKN  174 (284)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEEEET--TEEEECCCTTCEESSC
T ss_pred             HHHHHHHHH-HHHHHhCCeeeccCCHHHEEEcCC--CCEEECcchhheeccc
Confidence            344444444 455678999999999999999875  8999999999887654

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=95.40  E-value=0.015  Score=60.87  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      |++|+|.+|.||+++.+  +++.|.|||+...+....
T Consensus       162 ~ivH~Dikp~Nill~~~--~~~kl~Dfg~a~~~~~~~  196 (337)
T 3mdy_A          162 AIAHRDLKSKNILVKKN--GTCCIADLGLAVKFISDT  196 (337)
T ss_dssp             CEECSCCCGGGEEECTT--SCEEECCCTTCEECC---
T ss_pred             CEEecccchHHEEECCC--CCEEEEeCCCceeecccc
Confidence            99999999999999865  899999999998876543

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=95.39  E-value=0.012  Score=64.80  Aligned_cols=48  Identities=23%  Similarity=0.430  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ ++-+...|++|+|.+|.||+++.+  +.+.|.|||+.+.+.
T Consensus       160 ~~~~qi~~a-L~~LH~~~iiHrDlKp~NILl~~~--~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          160 TLLYNLLVG-VKYVHSAGILHRDLKPANCLVNQD--CSVKVCDFGLARTVD  207 (458)
T ss_dssp             HHHHHHHHH-HHHHHHTTCBCCCCCGGGEEECTT--CCEEECCCTTCBCTT
T ss_pred             HHHHHHHHH-HHHHHhCCcCCCCCChhhEEECCC--CCEeecccccchhcc
Confidence            344444443 445678999999999999999865  899999999998875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=95.39  E-value=0.013  Score=60.50  Aligned_cols=47  Identities=15%  Similarity=0.289  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       138 i~~~i~~~-l~~lH~~~i~H~dlkp~Nili~~~--~~~kl~Dfg~~~~~~  184 (307)
T 2nru_A          138 IAQGAANG-INFLHENHHIHRDIKSANILLDEA--FTAKISDFGLARASE  184 (307)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEECTT--CCEEECCCTTCEECC
T ss_pred             HHHHHHHH-HHHHhcCCeecCCCCHHHEEEcCC--CcEEEeecccccccc
Confidence            44444443 455678999999999999999764  899999999987654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=95.39  E-value=0.024  Score=64.06  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ   76 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~   76 (729)
                      ...++..+++. ++.+...|++|+|.+|.||+++.    ++.|+|||+.+.++.....
T Consensus       433 ~~~i~~qi~~a-L~~LH~~gIiHrDiKp~NILl~~----~~kL~DFGla~~~~~~~~~  485 (540)
T 3en9_A          433 NLDIAYKIGEI-VGKLHKNDVIHNDLTTSNFIFDK----DLYIIDFGLGKISNLDEDK  485 (540)
T ss_dssp             CTHHHHHHHHH-HHHHHHTTEECTTCCTTSEEESS----SEEECCCTTCEECCCHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHCcCccCCCCHHHEEECC----eEEEEECccCEECCCcccc
Confidence            34566666665 45667999999999999999963    8999999999999876543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=95.38  E-value=0.011  Score=61.16  Aligned_cols=50  Identities=22%  Similarity=0.323  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       106 ~i~~~l~~~-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~  155 (311)
T 4agu_A          106 SITWQTLQA-VNFCHKHNCIHRDVKPENILITKH--SVIKLCDFGFARLLTGP  155 (311)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECC--
T ss_pred             HHHHHHHHH-HHHHHHCCCcCCCCChhhEEEcCC--CCEEEeeCCCchhccCc
Confidence            344444443 456678999999999999999864  89999999999887643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=95.37  E-value=0.014  Score=59.05  Aligned_cols=50  Identities=22%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       115 ~~~~qi~~~-l~~lH~~~i~H~dl~p~Nil~~~~--~~~~l~dfg~~~~~~~~  164 (276)
T 2h6d_A          115 RLFQQILSA-VDYCHRHMVVHRDLKPENVLLDAH--MNAKIADFGLSNMMSDG  164 (276)
T ss_dssp             HHHHHHHHH-HHHHHHHCSSCCCCCGGGEEECTT--SCEEECCCCGGGCCCC-
T ss_pred             HHHHHHHHH-HHHHHHCCCccCCCChhhEEECCC--CCEEEeecccccccCCC
Confidence            344444443 455678999999999999999864  89999999999888654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=95.36  E-value=0.01  Score=65.31  Aligned_cols=48  Identities=25%  Similarity=0.312  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||++..+..
T Consensus       180 ~~~qi~~a-L~~LH~~giiHrDLKp~NILl~~~--g~vkL~DFGla~~~~~  227 (437)
T 4aw2_A          180 YLAEMVIA-IDSVHQLHYVHRDIKPDNILMDMN--GHIRLADFGSCLKLME  227 (437)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHhCCeEecccCHHHeeEcCC--CCEEEcchhhhhhccc
Confidence            33444433 445678999999999999999865  8999999999877653

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=95.34  E-value=0.012  Score=60.48  Aligned_cols=44  Identities=23%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTK   68 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~   68 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+..
T Consensus       122 ~~~~i~~~-l~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~  165 (302)
T 2j7t_A          122 VCRQMLEA-LNFLHSKRIIHRDLKAGNVLMTLE--GDIRLADFGVSA  165 (302)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCSGGGEEECTT--SCEEECCCHHHH
T ss_pred             HHHHHHHH-HHHHhcCCcccCCCCHHHEEECCC--CCEEEEECCCCc
Confidence            34444443 456778999999999999999865  899999999754

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=95.33  E-value=0.014  Score=59.88  Aligned_cols=48  Identities=21%  Similarity=0.342  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       119 ~i~~qi~~~-l~~lH~~~i~H~dl~p~Nil~~~~--~~~kl~dfg~~~~~~  166 (294)
T 2rku_A          119 YYLRQIVLG-CQYLHRNRVIHRDLKLGNLFLNED--LEVKIGDFGLATKVE  166 (294)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEECC
T ss_pred             HHHHHHHHH-HHHHHHCCccccCCChHhEEEcCC--CCEEEEeccCceecc
Confidence            344444443 355678999999999999999864  899999999998764

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=95.32  E-value=0.012  Score=63.55  Aligned_cols=48  Identities=19%  Similarity=0.305  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||+...++.
T Consensus       120 ~~~qi~~a-L~~LH~~givHrDlkp~NIll~~~--g~vkL~DFG~a~~~~~  167 (384)
T 4fr4_A          120 FICELVMA-LDYLQNQRIIHRDMKPDNILLDEH--GHVHITDFNIAAMLPR  167 (384)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCceeccCcHHHeEECCC--CCEEEeccceeeeccC
Confidence            34444433 455678999999999999999865  8999999999987653

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=95.32  E-value=0.011  Score=60.53  Aligned_cols=48  Identities=25%  Similarity=0.421  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       122 i~~qi~~~-l~~LH~~~i~H~dikp~Nil~~~~--~~~kl~Dfg~~~~~~~  169 (291)
T 1xbb_A          122 LVHQVSMG-MKYLEESNFVHRDLAARNVLLVTQ--HYAKISDFGLSKALRA  169 (291)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEEEET--TEEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHhCCeEcCCCCcceEEEeCC--CcEEEccCCcceeecc
Confidence            34444443 455678999999999999999875  7999999999987754

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=95.31  E-value=0.015  Score=60.07  Aligned_cols=49  Identities=14%  Similarity=0.297  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       150 ~~~qi~~~-l~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~  198 (313)
T 1t46_A          150 FSYQVAKG-MAFLASKNCIHRDLAARNILLTHG--RITKICDFGLARDIKND  198 (313)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEEETT--TEEEECCCGGGSCTTSC
T ss_pred             HHHHHHHH-HHHHHHCCeecCCCccceEEEcCC--CCEEEcccccccccccc
Confidence            44444443 455678999999999999999865  89999999999877543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=95.31  E-value=0.011  Score=61.72  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+....+..
T Consensus       105 ~~~qi~~a-L~~LH~~~ivH~Dikp~NIl~~~~--~~~kl~Dfg~a~~~~~~  153 (324)
T 3mtl_A          105 FLFQLLRG-LAYCHRQKVLHRDLKPQNLLINER--GELKLADFGLARAKSIP  153 (324)
T ss_dssp             HHHHHHHH-HHHHHHTTEEESSCCGGGEEECTT--CCEEECSSSEEECC---
T ss_pred             HHHHHHHH-HHHHHHCCccCCCcCHHHEEECCC--CCEEEccCcccccccCC
Confidence            34444443 455678999999999999999865  89999999998876543

>2xep_A ORF12; hydrolase; 1.50A {Streptomyces clavuligerus} PDB: 2xf3_A* 2xfs_A* 2xft_A 2xgn_A 2xh9_A*

Probab=95.30  E-value=0.021  Score=62.95  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=33.6

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|..|.++|++|.+++.++++.+++|+++||++|.
T Consensus       164 n~d~~~~~ASt~Kl~~a~~vl~~v~~G~l~ld~~v~  199 (458)
T 2xep_A          164 APERPMPTGSAYKLYLMRALVAEIEKGTVGWDEILT  199 (458)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHHHHTSSCTTCEEE
T ss_pred             CCCCcCccHHHHHHHHHHHHHHHHhcCCCCCCCeEE
Confidence            677789999999999999999999999999999875

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=95.29  E-value=0.016  Score=61.21  Aligned_cols=46  Identities=26%  Similarity=0.265  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+++..
T Consensus       110 ~~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~--g~vkL~DFG~a~~~  155 (337)
T 1o6l_A          110 YGAEIVSA-LEYLHSRDVVYRDIKLENLMLDKD--GHIKITDFGLCKEG  155 (337)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCCTTCBCS
T ss_pred             HHHHHHHH-HHHHHHCCeecCcCCHHHEEECCC--CCEEEeeccchhhc
Confidence            33344433 455678999999999999999865  89999999998764

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=95.29  E-value=0.013  Score=63.42  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      +..+...|++|+|.+|.||+++.+  |.+.|.|||+++.
T Consensus       166 L~~LH~~givHrDLKp~NILl~~~--g~ikL~DFGla~~  202 (396)
T 4dc2_A          166 LNYLHERGIIYRDLKLDNVLLDSE--GHIKLTDYGMCKE  202 (396)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCCTTCBC
T ss_pred             HHHHHHCCEEeccCCHHHEEECCC--CCEEEeecceeee
Confidence            455678999999999999999865  8999999999875

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=95.28  E-value=0.01  Score=62.27  Aligned_cols=48  Identities=19%  Similarity=0.371  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCC-----eEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHR-----PILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~-----lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +.     +.|.|||+...+..
T Consensus       110 i~~qi~~~-l~~LH~~~iiHrDlkp~Nill~~~--~~~~~~~~kl~DFg~a~~~~~  162 (330)
T 2izr_A          110 IAIQLISR-MEYVHSKNLIYRDVKPENFLIGRP--GNKTQQVIHIIDFALAKEYID  162 (330)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEECCG--GGTCTTSEEECCCTTCEESBC
T ss_pred             HHHHHHHH-HHHHHhCCeeccCCCHHHeeeccC--CCCCCceEEEEEcccceeeec
Confidence            44444443 456678999999999999999865  44     99999999987543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=95.28  E-value=0.014  Score=59.92  Aligned_cols=49  Identities=22%  Similarity=0.362  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       128 ~~~~qi~~~-l~~lH~~~i~H~dl~p~Nil~~~~--~~~kl~dfg~~~~~~~  176 (298)
T 1phk_A          128 KIMRALLEV-ICALHKLNIVHRDLKPENILLDDD--MNIKLTDFGFSCQLDP  176 (298)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--CCEEECCCTTCEECCT
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCCcceEEEcCC--CcEEEecccchhhcCC
Confidence            344444444 445678999999999999999864  8999999999987654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=95.27  E-value=0.012  Score=60.11  Aligned_cols=48  Identities=29%  Similarity=0.530  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEE---ecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLV---SKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv---~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++   ..  ++++.|.|||+...+..
T Consensus       110 i~~qi~~~-l~~LH~~~ivH~Dlkp~NIl~~~~~~--~~~~kL~Dfg~a~~~~~  160 (296)
T 4hgt_A          110 LADQMISR-IEYIHSKNFIHRDVKPDNFLMGLGKK--GNLVYIIDFGLAKKYRD  160 (296)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEECCGGG--TTCEEECCCTTCEECBC
T ss_pred             HHHHHHHH-HHHHHHCCeecCCCCHHHeeeeccCC--CCeEEEecCccceeccC
Confidence            33444433 455678999999999999999   44  47899999999987654

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=95.26  E-value=0.0089  Score=61.88  Aligned_cols=50  Identities=16%  Similarity=0.220  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       151 ~~~~~qi~~a-l~~lH~~~i~H~dikp~Nil~~~~--~~~kl~Dfg~~~~~~~  200 (316)
T 2xir_A          151 ICYSFQVAKG-MEFLASRKCIHRDLAARNILLSEK--NVVKICDFGLARDIYK  200 (316)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCCCSCCSGGGEEECGG--GCEEECCCGGGSCTTT
T ss_pred             HHHHHHHHHH-HHHHHhCCcccccCccceEEECCC--CCEEECCCcccccccc
Confidence            3445555544 345678999999999999999864  8999999999987643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=95.25  E-value=0.0092  Score=61.17  Aligned_cols=48  Identities=17%  Similarity=0.330  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+...+.
T Consensus       104 ~~~~qi~~~-l~~lH~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~  151 (288)
T 1ob3_A          104 SFLLQLLNG-IAYCHDRRVLHRDLKPQNLLINRE--GELKIADFGLARAFG  151 (288)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--SCEEECCTTHHHHHC
T ss_pred             HHHHHHHHH-HHHHHHCCeecCCCCHHHEEEcCC--CCEEEeECccccccC
Confidence            344455444 445678999999999999999865  899999999986554

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=95.24  E-value=0.013  Score=64.38  Aligned_cols=47  Identities=26%  Similarity=0.256  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +.-+.. .|++|+|.+|.||+++.+  |++.|.|||++....
T Consensus       253 ~~~qi~~a-L~~LH~~~giiHrDlkp~NIll~~~--~~~kl~DFG~a~~~~  300 (446)
T 4ejn_A          253 YGAEIVSA-LDYLHSEKNVVYRDLKLENLMLDKD--GHIKITDFGLCKEGI  300 (446)
T ss_dssp             HHHHHHHH-HHHHHHHTCCCCCCCCGGGEEECSS--SCEEECCCCCCCTTC
T ss_pred             HHHHHHHH-HHHHhhcCCEEECCCCHHHEEECCC--CCEEEccCCCceecc
Confidence            33444443 344455 899999999999999865  899999999987643

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=95.24  E-value=0.014  Score=60.27  Aligned_cols=50  Identities=22%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+...+...
T Consensus       140 ~i~~qi~~~-l~~LH~~~i~H~dl~p~NIl~~~~--~~~kl~Dfg~~~~~~~~  189 (310)
T 2wqm_A          140 KYFVQLCSA-LEHMHSRRVMHRDIKPANVFITAT--GVVKLGDLGLGRFFSSK  189 (310)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEECCC---------
T ss_pred             HHHHHHHHH-HHHHhhCCeeCCCCcHHHEEEcCC--CCEEEEeccceeeecCC
Confidence            344444444 455678999999999999999864  89999999998776543

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=95.23  E-value=0.018  Score=61.15  Aligned_cols=46  Identities=26%  Similarity=0.328  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||+++..
T Consensus       123 ~~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~--g~vkL~DFG~a~~~  168 (345)
T 1xjd_A          123 YAAEIILG-LQFLHSKGIVYRDLKLDNILLDKD--GHIKIADFGMCKEN  168 (345)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCCTTCBCC
T ss_pred             HHHHHHHH-HHHHHHCCeEeCCCChhhEEECCC--CCEEEeEChhhhhc
Confidence            34444433 455678999999999999999865  89999999998764

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=95.23  E-value=0.016  Score=62.21  Aligned_cols=45  Identities=29%  Similarity=0.374  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++.+ +..+...|++|+|.+|.||+++.+  |.+.|.|||+++.
T Consensus       144 ~~~qi~~a-L~~LH~~givHrDlkp~NIll~~~--g~ikL~DFG~a~~  188 (373)
T 2r5t_A          144 YAAEIASA-LGYLHSLNIVYRDLKPENILLDSQ--GHIVLTDFGLCKE  188 (373)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEECCCCBCGG
T ss_pred             HHHHHHHH-HHHHHHCCceecCCCHHHEEECCC--CCEEEeeCccccc
Confidence            33444433 455678999999999999999865  8999999999875

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=95.23  E-value=0.01  Score=60.58  Aligned_cols=49  Identities=20%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHc-CccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVD-GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~-GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+... |++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       114 i~~qi~~~-l~~lH~~~~i~H~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~~~  163 (290)
T 3fme_A          114 IAVSIVKA-LEHLHSKLSVIHRDVKPSNVLINAL--GQVKMCDFGISGYLVDD  163 (290)
T ss_dssp             HHHHHHHH-HHHHHHHSCCCCCCCSGGGCEECTT--CCEEBCCC---------
T ss_pred             HHHHHHHH-HHHHhhcCCeecCCCCHHHEEECCC--CCEEEeecCCccccccc
Confidence            34444443 3444566 99999999999999864  89999999998877554

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=95.20  E-value=0.016  Score=62.12  Aligned_cols=49  Identities=20%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++++ +.-+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       194 ~~i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~DFG~a~~~~  242 (382)
T 3tt0_A          194 VSCAYQVARG-MEYLASKKCIHRDLAARNVLVTED--NVMKIADFGLARDIH  242 (382)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--CCEEECSCSCCCCSS
T ss_pred             HHHHHHHHHH-HHHHHhCCEecCCCCcceEEEcCC--CcEEEcccCcccccc
Confidence            3445555544 445678999999999999999865  899999999987664

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=95.19  E-value=0.019  Score=61.48  Aligned_cols=49  Identities=27%  Similarity=0.428  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +.-+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       136 ~i~~qi~~a-L~~LH~~givH~Dlkp~NIll~~~--~~~kL~DFG~a~~~~~  184 (367)
T 2fst_X          136 FLIYQILRG-LKYIHSADIIHRDLKPSNLAVNED--CELKILDFGLARHTAD  184 (367)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--CCEEECC---------
T ss_pred             HHHHHHHHH-HHHHHHCCeeeCCCCHhhEEECCC--CCEEEeeccccccccc
Confidence            344444444 355678999999999999999865  8999999999876553

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=95.17  E-value=0.0093  Score=62.62  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       179 i~~qi~~~-l~~LH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~~~~~~~  226 (343)
T 1luf_A          179 IARQVAAG-MAYLSERKFVHRDLATRNCLVGEN--MVVKIADFGLSRNIYS  226 (343)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEECGG--GCEEECCCSCHHHHTG
T ss_pred             HHHHHHHH-HHHHHhCCeecCCCCcceEEECCC--CeEEEeecCCCccccc
Confidence            44455544 445678999999999999999865  8999999999876543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=95.17  E-value=0.019  Score=61.40  Aligned_cols=48  Identities=31%  Similarity=0.548  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+....+.
T Consensus       133 ~~~qi~~~-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kl~Dfg~a~~~~~  180 (367)
T 1cm8_A          133 LVYQMLKG-LRYIHAAGIIHRDLKPGNLAVNED--CELKILDFGLARQADS  180 (367)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEECCS
T ss_pred             HHHHHHHH-HHHHHHCCccccCcCHHHEEEcCC--CCEEEEeeeccccccc
Confidence            34444443 455678999999999999999865  8999999999987653

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=95.15  E-value=0.019  Score=60.08  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=30.0

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      |++|+|.+|.||++..+  +++.|.|||+...+..
T Consensus       140 ~ivH~Dikp~Nill~~~--~~~kL~DFG~a~~~~~  172 (336)
T 3g2f_A          140 AISHRDLNSRNVLVKND--GTCVISDFGLSMRLTG  172 (336)
T ss_dssp             CEECSSCSGGGEEECTT--SCEEECCCTTCEECSS
T ss_pred             ceeecccccceEEEcCC--CcEEEeeccceeeccc
Confidence            99999999999999864  8999999999988764

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=95.15  E-value=0.018  Score=59.90  Aligned_cols=48  Identities=23%  Similarity=0.396  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+.....
T Consensus       143 ~i~~~i~~~-l~~lH~~~ivH~dlkp~Nil~~~~--~~~kl~Dfg~~~~~~  190 (321)
T 2qkw_B          143 EICIGAARG-LHYLHTRAIIHRDVKSINILLDEN--FVPKITDFGISKKGT  190 (321)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCCSTTEEECTT--CCEEECCCTTCEECS
T ss_pred             HHHHHHHHH-HHHhcCCCeecCCCCHHHEEECCC--CCEEEeecccccccc
Confidence            344444443 455678999999999999999764  899999999987654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=95.14  E-value=0.015  Score=59.60  Aligned_cols=52  Identities=25%  Similarity=0.450  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEec-CCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSK-DPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~-d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||++.. +.++++.|.|||+...+...
T Consensus       109 ~i~~qi~~~-l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~  161 (296)
T 3uzp_A          109 LLADQMISR-IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA  161 (296)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred             HHHHHHHHH-HHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence            344444444 35567899999999999999951 12478999999999876543

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=95.13  E-value=0.013  Score=65.14  Aligned_cols=42  Identities=29%  Similarity=0.536  Sum_probs=33.6

Q ss_pred             HHHHHHcCccccCCCCCCeEEec-CCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSK-DPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~-d~~g~lvllDfG~v~~l~~   72 (729)
                      +..+...|++|+|.+|.||+|.. +.++++.|.|||+...+..
T Consensus       116 L~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~  158 (483)
T 3sv0_A          116 VEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRD  158 (483)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred             HHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccC
Confidence            45567899999999999999941 1247999999999986654

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=95.13  E-value=0.014  Score=63.99  Aligned_cols=51  Identities=24%  Similarity=0.416  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ++..++++ ++-+...|++|+|.+|.||+++.+  +++.|.|||+...+.....
T Consensus       134 i~~qil~a-L~~LH~~givHrDlkp~NILl~~~--~~~kL~DFGla~~~~~~~~  184 (432)
T 3n9x_A          134 ILYNLLLG-ENFIHESGIIHRDLKPANCLLNQD--CSVKVCDFGLARTINSEKD  184 (432)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEEC-----
T ss_pred             HHHHHHHH-HHHHHHCCCCCCCCCHHHeEECCC--CCEEEccCCCccccccccc
Confidence            34444443 345678999999999999999865  8999999999999876543

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=95.11  E-value=0.026  Score=59.20  Aligned_cols=38  Identities=24%  Similarity=0.135  Sum_probs=29.9

Q ss_pred             HcCccccCCCCCCeEEecCC--CCCeEEEecccccccCHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~~   73 (729)
                      ..+++|+|.|||||++..+.  ++.+++|||+.+..=++.
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G~~~  221 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLGHRA  221 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEECTT
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcCCCH
Confidence            35789999999999997631  157999999988766554

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=95.11  E-value=0.015  Score=61.60  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+......
T Consensus       139 ~~~qi~~~-l~~lH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~~~~~~~  186 (362)
T 3pg1_A          139 FMYHILLG-LHVLHEAGVVHRDLHPGNILLADN--NDITICDFNLAREDTA  186 (362)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--CCEEECCTTC------
T ss_pred             HHHHHHHH-HHHHHHCcCEecCCChHHEEEcCC--CCEEEEecCccccccc
Confidence            44444443 455678999999999999999864  8999999999975443

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=95.11  E-value=0.013  Score=62.03  Aligned_cols=49  Identities=29%  Similarity=0.324  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHH--HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIY--VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif--~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+. ..+.  ..|++|+|.+|.||+++.. ++++.|.|||+...++.
T Consensus       134 ~~~qi~~al-~~lH~~~~~ivH~Dlkp~NIll~~~-~~~~kl~Dfg~a~~~~~  184 (360)
T 3e3p_A          134 FLFQLIRSI-GCLHLPSVNVCHRDIKPHNVLVNEA-DGTLKLCDFGSAKKLSP  184 (360)
T ss_dssp             HHHHHHHHH-HHHTSTTTCCBCSCCCGGGEEEETT-TTEEEECCCTTCBCCCT
T ss_pred             HHHHHHHHH-HHHhCCCCCeecCcCCHHHEEEeCC-CCcEEEeeCCCceecCC
Confidence            333444332 3445  7899999999999999862 48999999999987764

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=95.10  E-value=0.013  Score=61.63  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +.-+...|++|+|.+|.||+++.+  +.+.|.|||+...+..
T Consensus       176 ~i~~qi~~a-L~~LH~~~ivH~Dikp~NIll~~~--~~~kL~Dfg~~~~~~~  224 (344)
T 1rjb_A          176 CFAYQVAKG-MEFLEFKSCVHRDLAARNVLVTHG--KVVKICDFGLARDIMS  224 (344)
T ss_dssp             HHHHHHHHH-HHHHHHTTEEETTCSGGGEEEETT--TEEEECCCGGGSCGGG
T ss_pred             HHHHHHHHH-HHHHHhCCcccCCCChhhEEEcCC--CcEEeCCCccCccccc
Confidence            344455544 344578999999999999999865  8999999999986643

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=95.09  E-value=0.016  Score=60.47  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHc---CccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVD---GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~---GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...   |++|+|.+|.||++..+  +++.|.|||+...++
T Consensus       135 ~i~~~i~~~-l~~lH~~~~~~ivH~Dlkp~Nil~~~~--~~~kl~Dfg~~~~~~  185 (326)
T 3uim_A          135 RIALGSARG-LAYLHDHCDPKIIHRDVKAANILLDEE--FEAVVGDFGLAKLMD  185 (326)
T ss_dssp             HHHHHHHHH-HHHHHHSSSSCEECCCCSGGGEEECTT--CCEEECCCSSCEECC
T ss_pred             HHHHHHHHH-HHHHHhCCCCCeEeCCCchhhEEECCC--CCEEeccCccccccC
Confidence            344444443 4456677   99999999999999864  899999999997654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=95.07  E-value=0.014  Score=59.10  Aligned_cols=51  Identities=25%  Similarity=0.430  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+ .++++.|.|||+...+..
T Consensus       110 ~i~~~i~~~-l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~  161 (277)
T 3f3z_A          110 RIMKDVLSA-VAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP  161 (277)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCT
T ss_pred             HHHHHHHHH-HHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccC
Confidence            344455444 455679999999999999999432 247899999999977653

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=95.07  E-value=0.012  Score=60.54  Aligned_cols=51  Identities=22%  Similarity=0.426  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++++. ..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       124 ~~i~~qi~~~l-~~lH~~~i~H~dl~p~Nil~~~~--~~~kl~dfg~~~~~~~~  174 (303)
T 2vwi_A          124 ATILREVLEGL-EYLHKNGQIHRDVKAGNILLGED--GSVQIADFGVSAFLATG  174 (303)
T ss_dssp             HHHHHHHHHHH-HHHHHTTCCCCCCSGGGEEECTT--CCEEECCCHHHHHCC--
T ss_pred             HHHHHHHHHHH-HHHHhCCCCCCCCChhhEEEcCC--CCEEEEeccchheeccC
Confidence            34455555544 55678999999999999999865  89999999998776543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=95.07  E-value=0.016  Score=60.36  Aligned_cols=47  Identities=21%  Similarity=0.316  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+  |++.|.|||+...+.
T Consensus       113 ~~~qi~~aL-~~lH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~~~~~~  159 (317)
T 2pmi_A          113 FQWQLLQGL-AFCHENKILHRDLKPQNLLINKR--GQLKLGDFGLARAFG  159 (317)
T ss_dssp             HHHHHHHHH-HHHHHTTEECCCCCGGGEEECTT--CCEEECCCSSCEETT
T ss_pred             HHHHHHHHH-HHHHHCCeeeCCCChHHeEEcCC--CCEEECcCccceecC
Confidence            344444443 45578999999999999999865  899999999998764

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=95.06  E-value=0.019  Score=58.65  Aligned_cols=51  Identities=22%  Similarity=0.380  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+ .++++.|.|||+...+..
T Consensus       128 ~i~~qi~~~-L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~  179 (285)
T 3is5_A          128 ELMKQMMNA-LAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKS  179 (285)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC---
T ss_pred             HHHHHHHHH-HHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCC
Confidence            344444443 445678999999999999999642 247899999999987654

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=95.05  E-value=0.013  Score=60.65  Aligned_cols=47  Identities=19%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ..++..++++ +..+...|++|+|.+|.||++.   ++++.|.|||+...+
T Consensus       133 ~~i~~qi~~a-l~~lH~~~i~H~dlkp~NIl~~---~~~~~l~Dfg~~~~~  179 (319)
T 2y4i_B          133 RQIAQEIVKG-MGYLHAKGILHKDLKSKNVFYD---NGKVVITDFGLFSIS  179 (319)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCCCCCCCSTTEEEC-----CCEECCCSCCC--
T ss_pred             HHHHHHHHHH-HHHHHhCCccccCCChhhEEEe---CCCEEEeecCCcccc
Confidence            3455555554 4556789999999999999996   379999999997654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=95.04  E-value=0.021  Score=60.98  Aligned_cols=48  Identities=29%  Similarity=0.514  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...++.
T Consensus       149 i~~qi~~a-L~~LH~~~ivH~Dikp~NIll~~~--~~~kL~Dfg~a~~~~~  196 (371)
T 4exu_A          149 LVYQMLKG-LKYIHSAGVVHRDLKPGNLAVNED--CELKILDFGLARHADA  196 (371)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--CCEEECSTTCC-----
T ss_pred             HHHHHHHH-HHHHHHCCCcCCCcCHHHeEECCC--CCEEEEecCccccccc
Confidence            44444443 455678899999999999999865  8999999999976544

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=95.04  E-value=0.014  Score=60.80  Aligned_cols=50  Identities=22%  Similarity=0.272  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHcC--ccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..++++ +..+...|  ++|+|.+|.||+++.+  +++.|.|||+...++...
T Consensus       141 i~~qi~~~-l~~LH~~~~~ivH~Dikp~NIl~~~~--~~~kl~Dfg~~~~~~~~~  192 (337)
T 3ll6_A          141 IFYQTCRA-VQHMHRQKPPIIHRDLKVENLLLSNQ--GTIKLCDFGSATTISHYP  192 (337)
T ss_dssp             HHHHHHHH-HHHHHTSSSCCBCCCCCGGGCEECTT--SCEEBCCCTTCBCCSSCC
T ss_pred             HHHHHHHH-HHHHHhCCCCEEEccCCcccEEECCC--CCEEEecCccceeccccC
Confidence            34444443 45556778  9999999999999865  899999999999887543

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=95.04  E-value=0.015  Score=61.23  Aligned_cols=48  Identities=19%  Similarity=0.355  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       135 i~~qi~~~-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~Dfg~a~~~~~  182 (335)
T 3dls_A          135 IFRQLVSA-VGYLRLKDIIHRDIKDENIVIAED--FTIKLIDFGSAAYLER  182 (335)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--SCEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHhCCeEEeccCHHHEEEcCC--CcEEEeecccceECCC
Confidence            44444443 345678999999999999999865  8999999999987753

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=95.04  E-value=0.015  Score=60.75  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+ ++++.|.|||+...+..
T Consensus       134 ~~~~qi~~~-l~~lH~~~ivH~Dikp~Nil~~~~-~~~~kl~Dfg~a~~~~~  183 (330)
T 3nsz_A          134 FYMYEILKA-LDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAEFYHP  183 (330)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEEETT-TTEEEECCCTTCEECCT
T ss_pred             HHHHHHHHH-HHHHHhCCeeeCCCCHHHEEEcCC-CCEEEEEeCCCceEcCC
Confidence            344444443 445678999999999999999865 24899999999986653

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=95.03  E-value=0.018  Score=60.97  Aligned_cols=48  Identities=21%  Similarity=0.261  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       159 i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~DfG~a~~~~~  206 (348)
T 1u5q_A          159 VTHGALQG-LAYLHSHNMIHRDVKAGNILLSEP--GLVKLGDFGSASIMAP  206 (348)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCSGGGEEEETT--TEEEECCCTTCBSSSS
T ss_pred             HHHHHHHH-HHHHHhCCeeeCCCCHHHEEECCC--CCEEEeeccCceecCC
Confidence            44444443 455678999999999999999865  8999999999987653

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=95.02  E-value=0.022  Score=59.58  Aligned_cols=36  Identities=14%  Similarity=0.139  Sum_probs=29.9

Q ss_pred             HHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           35 YVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        35 f~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ...++.|+|.||+||+++.+  +.+++|||+.++.=++
T Consensus       220 ~~~~l~HgD~~~~Nil~~~~--~~~~lIDfe~a~~g~~  255 (346)
T 2q83_A          220 KSPNLCHQDYGTGNTLLGEN--EQIWVIDLDTVSFDLP  255 (346)
T ss_dssp             HSCCEECSSCSTTSEEECGG--GCEEECCCTTCEECCT
T ss_pred             ccCceecCCCCcccEEEeCC--CcEEEEehhhcccCCh
Confidence            45789999999999999754  6899999998865444

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=95.01  E-value=0.014  Score=60.33  Aligned_cols=50  Identities=18%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       153 ~~i~~qi~~~-l~~lH~~~ivH~dikp~NIli~~~--~~~kl~Dfg~~~~~~~  202 (314)
T 2ivs_A          153 ISFAWQISQG-MQYLAEMKLVHRDLAARNILVAEG--RKMKISDFGLSRDVYE  202 (314)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECCCCSGGGEEEETT--TEEEECCCTTCEECTT
T ss_pred             HHHHHHHHHH-HHHHHHCCCcccccchheEEEcCC--CCEEEccccccccccc
Confidence            3445555544 445678999999999999999865  8999999999887643

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=95.00  E-value=0.016  Score=60.10  Aligned_cols=49  Identities=24%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       152 i~~qi~~a-L~~LH~~~ivH~dikp~NIli~~~--~~~kl~Dfg~~~~~~~~  200 (313)
T 3brb_A          152 FMVDIALG-MEYLSNRNFLHRDLAARNCMLRDD--MTVCVADFGLSKKIYSG  200 (313)
T ss_dssp             HHHHHHHH-HHHHHTTTCCCCCCSGGGEEECTT--SCEEECSCSCC------
T ss_pred             HHHHHHHH-HHHHHhCCcccCCCCcceEEEcCC--CcEEEeecCcceecccc
Confidence            34444443 345678999999999999999864  89999999999877543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=94.98  E-value=0.017  Score=62.89  Aligned_cols=47  Identities=13%  Similarity=0.139  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           24 EEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        24 ~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++++ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+.......
T Consensus       218 ~qi~~a-L~~LH~~~iiHrDiKp~NILl~~~--~~~kL~DFG~a~~~~~~  264 (413)
T 3dzo_A          218 LQVIRL-LASLHHYGLVHTYLRPVDIVLDQR--GGVFLTGFEHLVRDGAS  264 (413)
T ss_dssp             HHHHHH-HHHHHHTTEECSCCCGGGEEECTT--CCEEECCGGGCEETTEE
T ss_pred             HHHHHH-HHHHHhCCcccCCcccceEEEecC--CeEEEEeccceeecCCc
Confidence            344433 344568999999999999999875  78999999998875543

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=94.97  E-value=0.019  Score=61.15  Aligned_cols=48  Identities=19%  Similarity=0.218  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++.+++.|.|||+...
T Consensus       120 ~i~~ql~~~-L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~  167 (361)
T 3uc3_A          120 FFFQQLLSG-VSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKS  167 (361)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCcccc
Confidence            344444443 344678999999999999999876445699999998764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=94.96  E-value=0.017  Score=58.94  Aligned_cols=48  Identities=15%  Similarity=0.245  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHcC--ccccCCCCCCeEEecCCCCC-----eEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDG--FFNGDPHPGNFLVSKDPPHR-----PILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~G--ffHaDPHPGNilv~~d~~g~-----lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|  ++|+|.+|.||++..+  +.     +.|.|||+......
T Consensus       127 ~~~~l~~~-l~~lH~~~~~ivH~dikp~Nil~~~~--~~~~~~~~kl~Dfg~~~~~~~  181 (287)
T 4f0f_A          127 LMLDIALG-IEYMQNQNPPIVHRDLRSPNIFLQSL--DENAPVCAKVADFGLSQQSVH  181 (287)
T ss_dssp             HHHHHHHH-HHHHHTSSSCCBCSCCSGGGEEESCC--CTTCSCCEEECCCTTCBCCSS
T ss_pred             HHHHHHHH-HHHHHhCCCCeecCCCCcceEEEecc--CCCCceeEEeCCCCccccccc
Confidence            33444333 45567889  9999999999999865  44     89999999875543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=94.95  E-value=0.02  Score=60.06  Aligned_cols=49  Identities=18%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       161 ~i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~--~~~kL~Dfg~~~~~~~  209 (334)
T 2pvf_A          161 SCTYQLARG-MEYLASQKCIHRDLAARNVLVTEN--NVMKIADFGLARDINN  209 (334)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--CCEEECCCTTCEECTT
T ss_pred             HHHHHHHHH-HHHHHhCCeeCCCCccceEEEcCC--CCEEEccccccccccc
Confidence            344445444 345678999999999999999864  8999999999986653

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=94.92  E-value=0.015  Score=61.39  Aligned_cols=49  Identities=16%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       197 ~~~~ql~~a-L~~LH~~~ivH~Dikp~NIll~~~--~~~kl~Dfg~a~~~~~  245 (359)
T 3vhe_A          197 CYSFQVAKG-MEFLASRKCIHRDLAARNILLSEK--NVVKICDFGLARDIYK  245 (359)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCSGGGEEECGG--GCEEECCCGGGSCTTS
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCChhhEEEcCC--CcEEEEeccceeeecc
Confidence            344455544 445678999999999999999865  8999999999987643

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=94.92  E-value=0.019  Score=59.33  Aligned_cols=49  Identities=24%  Similarity=0.420  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++. ..+.. .|++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       129 ~~~~i~~~l-~~lH~~~~i~H~dlkp~Nil~~~~--~~~kl~dfg~~~~~~~~  178 (318)
T 2dyl_A          129 MTVAIVKAL-YYLKEKHGVIHRDVKPSNILLDER--GQIKLCDFGISGRLVDD  178 (318)
T ss_dssp             HHHHHHHHH-HHHHHHHCCCCCCCCGGGEEECTT--SCEEECCCTTC------
T ss_pred             HHHHHHHHH-HHHHhhCCEEeCCCCHHHEEECCC--CCEEEEECCCchhccCC
Confidence            344444433 33344 599999999999999865  89999999998776543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=94.89  E-value=0.028  Score=58.06  Aligned_cols=50  Identities=18%  Similarity=0.337  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+ ++++.|.|||+...++..
T Consensus       125 ~~~qi~~~-l~~lH~~~i~H~dlkp~Nil~~~~-~~~~kl~Dfg~~~~~~~~  174 (320)
T 2i6l_A          125 FMYQLLRG-LKYIHSANVLHRDLKPANLFINTE-DLVLKIGDFGLARIMDPH  174 (320)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCSGGGEEEETT-TTEEEECCCTTCBCC---
T ss_pred             HHHHHHHH-HHHHHhCCEecCCCCHHHEEEcCC-CCeEEEccCccccccCCC
Confidence            44444443 455678999999999999999754 478999999999887643

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=94.89  E-value=0.026  Score=60.28  Aligned_cols=48  Identities=23%  Similarity=0.448  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       132 i~~qi~~a-l~~lH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~a~~~~~  179 (371)
T 2xrw_A          132 LLYQMLCG-IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAGT  179 (371)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--SCEEECCCCC------
T ss_pred             HHHHHHHH-HHHHHHCCeecccCCHHHEEEcCC--CCEEEEEeeccccccc
Confidence            44444443 445678999999999999999865  8999999999876653

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=94.89  E-value=0.017  Score=58.81  Aligned_cols=48  Identities=25%  Similarity=0.331  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+......
T Consensus       119 ~~~qi~~~-l~~lH~~~i~H~dl~p~Nil~~~~--~~~kl~Dfg~~~~~~~  166 (284)
T 2vgo_A          119 FMEELADA-LHYCHERKVIHRDIKPENLLMGYK--GELKIADFGWSVHAPS  166 (284)
T ss_dssp             HHHHHHHH-HHHHHTTTEECCCCSGGGEEECTT--CCEEECCCTTCEECSS
T ss_pred             HHHHHHHH-HHHHHHCCceecCCCHHHEEEcCC--CCEEEecccccccCcc
Confidence            44444443 355678999999999999999864  8999999998866543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=94.88  E-value=0.019  Score=60.46  Aligned_cols=51  Identities=25%  Similarity=0.485  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++++ +..+...|++|+|.+|.||++.   ++.+.|.|||+...+....
T Consensus       111 ~~i~~qi~~a-l~~lH~~~iiHrDikp~NIll~---~~~~kl~DFG~a~~~~~~~  161 (343)
T 3dbq_A          111 KSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIV---DGMLKLIDFGIANQMQPDT  161 (343)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCCCCCCCGGGEEEE---TTEEEECCCSSSCCC----
T ss_pred             HHHHHHHHHH-HHHHHhCCeecCCCCcceEEEE---CCcEEEeecccccccCccc
Confidence            3445555544 4556789999999999999996   3789999999999887653

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=94.85  E-value=0.013  Score=67.38  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=34.1

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .-+...|++|.|.+|.|||++.+  |.|-|.|||+.+.++.
T Consensus       306 ~yLH~~gIiHRDLKPeNILld~~--G~vKL~DFGlA~~~~~  344 (689)
T 3v5w_A          306 EHMHNRFVVYRDLKPANILLDEH--GHVRISDLGLACDFSK  344 (689)
T ss_dssp             HHHHTTTEECCCCSGGGEEECTT--SCEEECCCTTCEECSS
T ss_pred             HHHHHCCccccCCchHHeEEeCC--CCEEecccceeeecCC
Confidence            44568999999999999999865  8999999999988764

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=94.84  E-value=0.02  Score=60.67  Aligned_cols=51  Identities=27%  Similarity=0.441  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEec-CCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSK-DPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~-d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++.. ++++++.|.|||+...+..
T Consensus       152 ~i~~qi~~~-L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~  203 (349)
T 2w4o_A          152 DAVKQILEA-VAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH  203 (349)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------
T ss_pred             HHHHHHHHH-HHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc
Confidence            344444443 45567899999999999999975 2358999999999887654

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=94.84  E-value=0.02  Score=61.83  Aligned_cols=50  Identities=20%  Similarity=0.329  Sum_probs=34.3

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH--HHHHHHHHHHHHHhC
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS--MKQALAKMFFAAAEG   88 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~--~r~~l~~L~~a~~~~   88 (729)
                      ...+.|+|+|||||++.++   ++++|||..+..=++.  .-.-+..++.+....
T Consensus       226 ~~~L~HGDl~~~Nil~~~~---~~~lID~e~a~~G~p~~DLa~~l~~~~~~~~~~  277 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH---ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSR  277 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS---CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHS
T ss_pred             CCceeeCCCCcCcEEEeCC---CeEEEeCcccccCChHHhHHHHHHHHHHHHhcC
Confidence            4688999999999999753   6999998655544444  333344555554443

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=94.84  E-value=0.023  Score=58.89  Aligned_cols=47  Identities=26%  Similarity=0.517  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +++.|.|||+...+.
T Consensus       139 i~~qi~~~-L~~LH~~~ivH~dlkp~NIl~~~~--~~~kl~dfg~~~~~~  185 (317)
T 2buj_A          139 LLLGICRG-LEAIHAKGYAHRDLKPTNILLGDE--GQPVLMDLGSMNQAC  185 (317)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--SCEEECCCSSCEESC
T ss_pred             HHHHHHHH-HHHHHhCCcccCCCCHHHEEEcCC--CCEEEEecCcchhcc
Confidence            44444444 455678999999999999999764  899999999887764

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=94.82  E-value=0.014  Score=59.88  Aligned_cols=46  Identities=20%  Similarity=0.322  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+
T Consensus       108 ~~~~i~~~-l~~lH~~~i~H~dlkp~Nili~~~--~~~kl~dfg~~~~~  153 (299)
T 2r3i_A          108 YLFQLLQG-LAFCHSHRVLHRDLKPQNLLINTE--GAIKLADFGLARAF  153 (299)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEECSTTHHHHH
T ss_pred             HHHHHHHH-HHHHHHCCccCCCCCHHHeEEcCC--CCEEECcchhhhhc
Confidence            34444433 445678999999999999999865  89999999987654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=94.81  E-value=0.028  Score=61.81  Aligned_cols=51  Identities=22%  Similarity=0.338  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+ .++.+.|.|||+...+..
T Consensus       114 ~i~~qil~a-L~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~  165 (444)
T 3soa_A          114 HCIQQILEA-VLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEG  165 (444)
T ss_dssp             HHHHHHHHH-HHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCT
T ss_pred             HHHHHHHHH-HHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecC
Confidence            344444444 355678999999999999999853 247899999999987764

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=94.80  E-value=0.02  Score=62.02  Aligned_cols=52  Identities=23%  Similarity=0.314  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+ +.-+...|++|+|.+|.||+++.+. ++.+.|.|||+...+...
T Consensus       165 ~i~~qi~~a-L~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~  217 (400)
T 1nxk_A          165 EIMKSIGEA-IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSH  217 (400)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC--
T ss_pred             HHHHHHHHH-HHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCC
Confidence            344444443 3455789999999999999998631 478999999999877653

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=94.79  E-value=0.018  Score=59.54  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+ ++++.|.|||+...+..
T Consensus       143 ~~~~qi~~~-l~~lH~~~i~H~dlkp~Nil~~~~-~~~~kl~dfg~~~~~~~  192 (312)
T 2iwi_A          143 CFFGQVVAA-IQHCHSRGVVHRDIKDENILIDLR-RGCAKLIDFGSGALLHD  192 (312)
T ss_dssp             HHHHHHHHH-HHHHHHHTEECCCCSGGGEEEETT-TTEEEECCCSSCEECCS
T ss_pred             HHHHHHHHH-HHHHHHCCeeecCCChhhEEEeCC-CCeEEEEEcchhhhccc
Confidence            344444444 455678899999999999999843 48999999999887654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=94.78  E-value=0.023  Score=60.15  Aligned_cols=51  Identities=16%  Similarity=0.288  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.++.+++.|.|||+...+...
T Consensus       164 i~~qi~~~-L~~LH~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~  214 (352)
T 2jii_A          164 VACRLLDA-LEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPS  214 (352)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGG
T ss_pred             HHHHHHHH-HHHHHhCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCC
Confidence            44444443 4456788999999999999998751128999999999877653

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=94.77  E-value=0.023  Score=57.27  Aligned_cols=51  Identities=18%  Similarity=0.306  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHcC---ccccCCCCCCeEEecC------CCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDG---FFNGDPHPGNFLVSKD------PPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~G---ffHaDPHPGNilv~~d------~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|   ++|+|.+|.||++..+      .++.+.|.|||+...+...
T Consensus       110 i~~~l~~~-l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~  169 (271)
T 3dtc_A          110 WAVQIARG-MNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRT  169 (271)
T ss_dssp             HHHHHHHH-HHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------
T ss_pred             HHHHHHHH-HHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccc
Confidence            33444433 45567788   8899999999999852      1478999999999876543

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=94.76  E-value=0.011  Score=64.40  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=31.7

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ   76 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~   76 (729)
                      ...+.|+|+|||||++..+   ++++|||+.+..=++.+=.
T Consensus       231 ~~~liHGDl~~~Nil~~~~---~~~lID~e~a~~G~p~~Dl  268 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQD---STQVIDPEFSFYGPMGFDI  268 (420)
T ss_dssp             CCEEECSCCSGGGEEECSS---CEEECCCTTCEEECHHHHH
T ss_pred             CCeEEecCCCCCcEEEeCC---CCEEEeCcccccCchHHHH
Confidence            5788999999999999754   4999999999888766433

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=94.75  E-value=0.024  Score=57.52  Aligned_cols=52  Identities=21%  Similarity=0.382  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++  ++++.|.|||+...+...
T Consensus       112 ~~~~~i~~~-l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~  165 (283)
T 3bhy_A          112 QFLKQILDG-VHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAG  165 (283)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--
T ss_pred             HHHHHHHHH-HHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccCC
Confidence            344444443 3456789999999999999998652  127999999999988654

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=94.75  E-value=0.018  Score=60.54  Aligned_cols=49  Identities=22%  Similarity=0.407  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHH-cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYV-DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~-~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. ..+.. .|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       155 ~i~~qi~~~l-~~lH~~~~i~H~dl~p~Nil~~~~--~~~kl~dfg~~~~~~~  204 (348)
T 2pml_X          155 CIIKSVLNSF-SYIHNEKNICHRDVKPSNILMDKN--GRVKLSDFGESEYMVD  204 (348)
T ss_dssp             HHHHHHHHHH-HHHHHTSCEECCCCCGGGEEECTT--SCEEECCCTTCEECBT
T ss_pred             HHHHHHHHHH-HHHhccCCEeecCCChHhEEEcCC--CcEEEecccccccccc
Confidence            3445555443 44566 899999999999999865  8999999999987644

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=94.74  E-value=0.024  Score=63.95  Aligned_cols=49  Identities=18%  Similarity=0.311  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +.-+...|++|+|.+|.||++..+  +.+.|.|||+...+...
T Consensus       368 i~~qi~~~-L~~LH~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~~~~~  416 (535)
T 2h8h_A          368 MAAQIASG-MAYVERMNYVHRDLRAANILVGEN--LVCKVADFGLARLIEDN  416 (535)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEECGG--GCEEECCTTSTTTCCCH
T ss_pred             HHHHHHHH-HHHHHhCCeeCCCCCHhhEEEcCC--CcEEEcccccceecCCC
Confidence            34444443 455678999999999999999864  79999999999988654

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=94.73  E-value=0.018  Score=59.33  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+ +..+...|++|+|.+|.||+++.+. ++.+.|.|||+...+..
T Consensus       121 ~i~~qi~~~-l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  172 (299)
T 3m2w_A          121 EIMKSIGEA-IQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG  172 (299)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT
T ss_pred             HHHHHHHHH-HHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc
Confidence            344444443 4556789999999999999998632 47899999999988775

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=94.69  E-value=0.022  Score=59.44  Aligned_cols=49  Identities=20%  Similarity=0.245  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+ ++++.|.|||+...+..
T Consensus       154 i~~qi~~~-L~~LH~~~ivH~Dlkp~NIll~~~-~~~~kL~Dfg~~~~~~~  202 (320)
T 3a99_A          154 FFWQVLEA-VRHCHNCGVLHRDIKDENILIDLN-RGELKLIDFGSGALLKD  202 (320)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEEETT-TTEEEECCCTTCEECCS
T ss_pred             HHHHHHHH-HHHHHHCCcEeCCCCHHHEEEeCC-CCCEEEeeCcccccccc
Confidence            44444443 355678999999999999999843 48999999999887654

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=94.68  E-value=0.019  Score=58.85  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..|++|+|.+|.||+++.+  +++.|.|||+...++
T Consensus       131 ~~~ivH~Dlkp~Nill~~~--~~~kl~Dfg~a~~~~  164 (301)
T 3q4u_A          131 KPAIAHRDLKSKNILVKKN--GQCCIADLGLAVMHS  164 (301)
T ss_dssp             BCEEECSCCCGGGEEECTT--SCEEECCCTTCEEEE
T ss_pred             CCCeecCCCChHhEEEcCC--CCEEEeeCCCeeecc
Confidence            6799999999999999864  899999999986544

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=94.68  E-value=0.025  Score=57.74  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+ ++++.|.|||+...+..
T Consensus       127 ~~~qi~~~-l~~lH~~~i~H~dl~p~Nil~~~~-~~~~kl~Dfg~~~~~~~  175 (295)
T 2clq_A          127 YTKQILEG-LKYLHDNQIVHRDIKGDNVLINTY-SGVLKISDFGTSKRLAG  175 (295)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEEETT-TCCEEECCTTTCEESCC
T ss_pred             HHHHHHHH-HHHHHhCCEEccCCChhhEEEECC-CCCEEEeecccccccCC
Confidence            34444444 455678999999999999999863 48999999999988764

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=94.68  E-value=0.02  Score=65.72  Aligned_cols=49  Identities=20%  Similarity=0.389  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+  +.+.|.|||+.+.+...
T Consensus       441 i~~qi~~~-L~~LH~~~iiHrDlkp~NILl~~~--~~vkL~DFGla~~~~~~  489 (613)
T 2ozo_A          441 LLHQVSMG-MKYLEEKNFVHRNLAARNVLLVNR--HYAKISDFGLSKALGAD  489 (613)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEEEET--TEEEECCCSTTTTCC--
T ss_pred             HHHHHHHH-HHHHHHCCEEcCcCCHHHEEEcCC--CcEEEeeccCcccccCC
Confidence            33444433 455678999999999999999875  79999999999988654

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=94.67  E-value=0.021  Score=59.89  Aligned_cols=50  Identities=32%  Similarity=0.525  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.++.+++.|.|||+...+..
T Consensus       173 i~~qi~~~-l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~  222 (345)
T 3hko_A          173 IMRQIFSA-LHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYK  222 (345)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGG
T ss_pred             HHHHHHHH-HHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccc
Confidence            44444443 344578899999999999999876444899999999987643

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=94.67  E-value=0.03  Score=57.88  Aligned_cols=36  Identities=14%  Similarity=0.167  Sum_probs=29.5

Q ss_pred             HHHcC--ccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           34 IYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        34 if~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      +...|  ++|.|.+|.|||++.+ +|.+-|.|||+.+..
T Consensus       145 lH~~~~~IiHRDlKp~NILl~~~-~g~vKl~DFGla~~~  182 (290)
T 3fpq_A          145 LHTRTPPIIHRDLKCDNIFITGP-TGSVKIGDLGLATLK  182 (290)
T ss_dssp             HHTSSSCCCCCCCCGGGEEESST-TSCEEECCTTGGGGC
T ss_pred             HHHCCCCEEecccChhheeEECC-CCCEEEEeCcCCEeC
Confidence            34567  9999999999999742 489999999998643

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=94.66  E-value=0.018  Score=60.05  Aligned_cols=47  Identities=21%  Similarity=0.383  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+....
T Consensus       146 ~i~~qi~~a-L~~LH~~~ivH~dlkp~NIl~~~~--~~~kL~Dfg~~~~~  192 (327)
T 1fvr_A          146 HFAADVARG-MDYLSQKQFIHRDLAARNILVGEN--YVAKIADFGLSRGQ  192 (327)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEECGG--GCEEECCTTCEESS
T ss_pred             HHHHHHHHH-HHHHHhCCccCCCCccceEEEcCC--CeEEEcccCcCccc
Confidence            344444444 345678999999999999999864  79999999998643

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=94.64  E-value=0.028  Score=57.80  Aligned_cols=47  Identities=17%  Similarity=0.328  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +++.|.|||+...+.
T Consensus       114 ~~~qi~~a-l~~LH~~~i~H~dlkp~NIl~~~~--~~~kl~dfg~~~~~~  160 (305)
T 2wtk_C          114 YFCQLIDG-LEYLHSQGIVHKDIKPGNLLLTTG--GTLKISALGVAEALH  160 (305)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--CCEEECCCTTCEECC
T ss_pred             HHHHHHHH-HHHHHHCCeeecCCCcccEEEcCC--CcEEeeccccccccC
Confidence            34444443 455678999999999999999865  899999999998765

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=94.58  E-value=0.022  Score=57.72  Aligned_cols=49  Identities=24%  Similarity=0.375  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHcC-----ccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDG-----FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~G-----ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|     ++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       116 i~~~i~~~-l~~lH~~~~~~~~ivH~dl~p~NIl~~~~--~~~kl~dfg~~~~~~~~  169 (279)
T 2w5a_A          116 VMTQLTLA-LKECHRRSDGGHTVLHRDLKPANVFLDGK--QNVKLGDFGLARILNHD  169 (279)
T ss_dssp             HHHHHHHH-HHHHHHHC------CCCCCSGGGEEECSS--SCEEECCCCHHHHC---
T ss_pred             HHHHHHHH-HHHHhcccCCCCeeEEeccchhhEEEcCC--CCEEEecCchheeeccc
Confidence            33444433 34566777     9999999999999864  89999999998877543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=94.57  E-value=0.023  Score=59.54  Aligned_cols=51  Identities=20%  Similarity=0.279  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC--CCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP--PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~--~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++  ..++.|.|||+...++.
T Consensus       118 ~i~~qi~~a-l~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~  170 (326)
T 2y0a_A          118 EFLKQILNG-VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  170 (326)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCT
T ss_pred             HHHHHHHHH-HHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCC
Confidence            344444444 3446789999999999999998652  12799999999988753

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=94.56  E-value=0.026  Score=57.37  Aligned_cols=50  Identities=20%  Similarity=0.369  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..++ ++.+.|.|||+...+..
T Consensus       110 ~~~~i~~~-l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  160 (284)
T 3kk8_A          110 CIQQILES-IAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  160 (284)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred             HHHHHHHH-HHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence            44444443 4566789999999999999998652 23599999999876654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=94.56  E-value=0.021  Score=63.42  Aligned_cols=49  Identities=20%  Similarity=0.337  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...++.
T Consensus       120 ~i~~qi~~a-L~~LH~~givHrDLkp~NIll~~~--~~vkL~DFG~a~~~~~  168 (476)
T 2y94_A          120 RLFQQILSG-VDYCHRHMVVHRDLKPENVLLDAH--MNAKIADFGLSNMMSD  168 (476)
T ss_dssp             HHHHHHHHH-HHHHHTTTEECSCCSGGGEEECTT--CCEEECCCSSCEECCT
T ss_pred             HHHHHHHHH-HHHHHHCCCCcccccHHHEEEecC--CCeEEEeccchhhccc
Confidence            344444444 345678999999999999999864  8999999999987754

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=94.56  E-value=0.075  Score=54.46  Aligned_cols=40  Identities=20%  Similarity=0.081  Sum_probs=31.8

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..+...|++|+|.+|.||++..+  |++.|.++|.+...+.
T Consensus       142 L~~lH~~givH~Dikp~NIll~~~--g~~kl~~~~~~~~~~~  181 (286)
T 3uqc_A          142 ADAAHRAGVALSIDHPSRVRVSID--GDVVLAYPATMPDANP  181 (286)
T ss_dssp             HHHHHHTTCCCCCCSGGGEEEETT--SCEEECSCCCCTTCCH
T ss_pred             HHHHHHCCCccCCCCcccEEEcCC--CCEEEEeccccCCCCc
Confidence            456779999999999999999875  7787777777665443

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=94.56  E-value=0.021  Score=61.29  Aligned_cols=49  Identities=33%  Similarity=0.379  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++. .-+...|++|+|.+|.||+++.+ ++++.|.|||+...+..
T Consensus       146 i~~qi~~aL-~~LH~~gi~H~Dikp~Nil~~~~-~~~~kl~Dfg~a~~~~~  194 (383)
T 3eb0_A          146 YIYQLFRAV-GFIHSLGICHRDIKPQNLLVNSK-DNTLKLCDFGSAKKLIP  194 (383)
T ss_dssp             HHHHHHHHH-HHHHTTTEECSCCCGGGEEEETT-TTEEEECCCTTCEECCT
T ss_pred             HHHHHHHHH-HHHHHCcCccCccCHHHEEEcCC-CCcEEEEECCCCcccCC
Confidence            344444433 34467999999999999999743 48999999999987643

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=94.55  E-value=0.019  Score=59.73  Aligned_cols=50  Identities=20%  Similarity=0.392  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||++..+  +++.+.|.|||+...+..
T Consensus       117 i~~qi~~~-L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~  168 (319)
T 4euu_A          117 VLRDVVGG-MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (319)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCC
Confidence            33444333 455678999999999999998322  235689999999988764

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=94.55  E-value=0.022  Score=59.62  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=30.5

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..|++|+|.+|.||+++.+  +++.|.|||+...+..
T Consensus       165 ~~~ivH~Dlkp~NIll~~~--~~~kL~Dfg~~~~~~~  199 (342)
T 1b6c_B          165 KPAIAHRDLKSKNILVKKN--GTCCIADLGLAVRHDS  199 (342)
T ss_dssp             BCEEECSCCSGGGEEECTT--SCEEECCCTTCEEEET
T ss_pred             cCCeeeCCCCHHHEEECCC--CCEEEEECCCceeccc
Confidence            6799999999999999865  8999999999876543

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=94.54  E-value=0.028  Score=58.78  Aligned_cols=52  Identities=21%  Similarity=0.416  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||++... +++++.|.|||+...++..
T Consensus       135 ~i~~ql~~~-L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~  187 (327)
T 3lm5_A          135 RLIKQILEG-VYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA  187 (327)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---
T ss_pred             HHHHHHHHH-HHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCc
Confidence            344444444 445678999999999999999862 1479999999999988654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=94.53  E-value=0.024  Score=62.49  Aligned_cols=49  Identities=18%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+  +.+.|.|||+...+...
T Consensus       285 i~~qi~~~-l~~LH~~~ivHrDlkp~Nill~~~--~~~kl~DfG~a~~~~~~  333 (452)
T 1fmk_A          285 MAAQIASG-MAYVERMNYVHRDLRAANILVGEN--LVCKVADFGLARLIEDN  333 (452)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEECGG--GCEEECCCCTTC-----
T ss_pred             HHHHHHHH-HHHHHhCCeeCCCCChhhEEECCC--CCEEECCCccceecCCC
Confidence            34444443 445678999999999999999864  89999999999877643

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=94.52  E-value=0.025  Score=60.92  Aligned_cols=50  Identities=26%  Similarity=0.498  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++++ +.-+...|++|+|.+|.||++.   ++.+.|.|||+...+...
T Consensus       158 ~~i~~qi~~a-L~~lH~~~ivHrDlkp~NIll~---~~~~kl~DFG~a~~~~~~  207 (390)
T 2zmd_A          158 KSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIV---DGMLKLIDFGIANQMQPD  207 (390)
T ss_dssp             HHHHHHHHHH-HHHHHTTTCCCCCCCGGGEEES---SSCEEECCCSSSCCC---
T ss_pred             HHHHHHHHHH-HHHHHHCCeeecCCCHHHEEEE---CCeEEEEecCccccccCC
Confidence            4455555554 4556789999999999999995   379999999999988654

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=94.52  E-value=0.027  Score=58.72  Aligned_cols=50  Identities=24%  Similarity=0.420  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHc-CccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVD-GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~-GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++. ..+... |++|+|.+|.||+++.+  +++.|.|||+...+...
T Consensus       129 ~i~~~i~~~l-~~lH~~~~ivH~dlkp~NIll~~~--~~~kl~Dfg~~~~~~~~  179 (327)
T 3aln_A          129 KITLATVKAL-NHLKENLKIIHRDIKPSNILLDRS--GNIKLCDFGISGQLVDS  179 (327)
T ss_dssp             HHHHHHHHHH-HHHHHHHSCCCSCCCGGGEEEETT--TEEEECCCSSSCC----
T ss_pred             HHHHHHHHHH-HHHhccCCEeECCCCHHHEEEcCC--CCEEEccCCCceecccc
Confidence            3444444433 344555 99999999999999865  89999999999887654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=94.51  E-value=0.034  Score=61.17  Aligned_cols=49  Identities=22%  Similarity=0.325  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +.-+...|++|+|.+|.||++..+  +.+.|.|||+...+...
T Consensus       289 ~~~qi~~~-l~~LH~~~ivHrDlkp~Nill~~~--~~~kl~DFG~a~~~~~~  337 (454)
T 1qcf_A          289 FSAQIAEG-MAFIEQRNYIHRDLRAANILVSAS--LVCKIADFGLARVIEDN  337 (454)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSSCSGGGEEECTT--CCEEECSTTGGGGBCCH
T ss_pred             HHHHHHHH-HHHHHhCCccCCCCCHHHEEECCC--CcEEEeeCCCceEcCCC
Confidence            44444444 345678999999999999999864  89999999999887654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=94.49  E-value=0.03  Score=58.45  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=29.5

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      |++|+|.+|.||+++.+  +++.|.|||+...++.
T Consensus       151 ~ivH~Dlkp~Nill~~~--~~~kL~DFg~a~~~~~  183 (322)
T 3soc_A          151 AISHRDIKSKNVLLKNN--LTACIADFGLALKFEA  183 (322)
T ss_dssp             EEECSCCSGGGEEECTT--CCEEECCCTTCEEECT
T ss_pred             CEEeCCCChHhEEECCC--CeEEEccCCccccccc
Confidence            99999999999999764  8999999999977654

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=94.48  E-value=0.026  Score=58.82  Aligned_cols=52  Identities=17%  Similarity=0.308  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC--CCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP--HRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~--g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++ +..+...|++|+|.+|.||++..++.  .++.|.|||+...+..
T Consensus       118 ~~i~~qi~~a-L~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~  171 (321)
T 2a2a_A          118 TSFIKQILDG-VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED  171 (321)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCT
T ss_pred             HHHHHHHHHH-HHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCc
Confidence            3444455544 34567899999999999999986511  1799999999987764

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=94.46  E-value=0.023  Score=59.46  Aligned_cols=51  Identities=18%  Similarity=0.371  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||++..++ +.++.|.|||+....+..
T Consensus       111 i~~qi~~~-l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~  162 (325)
T 3kn6_A          111 IMRKLVSA-VSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD  162 (325)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-
T ss_pred             HHHHHHHH-HHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCC
Confidence            44444443 4456789999999999999998641 127999999999876654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=94.45  E-value=0.018  Score=65.52  Aligned_cols=50  Identities=20%  Similarity=0.422  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|.|.+|.||++..+..|.|-|.|||+.+.+++
T Consensus       260 ~~~qi~~a-l~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~  309 (573)
T 3uto_A          260 YMRQVCKG-LCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP  309 (573)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccC
Confidence            33444433 334568999999999999999865558999999999998764

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=94.44  E-value=0.027  Score=65.25  Aligned_cols=49  Identities=27%  Similarity=0.322  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  |++.|.|||+...+...
T Consensus       496 i~~qi~~a-L~~LH~~givHrDikp~NILl~~~--~~vkL~DFG~a~~~~~~  544 (656)
T 2j0j_A          496 YAYQLSTA-LAYLESKRFVHRDIAARNVLVSSN--DCVKLGDFGLSRYMEDS  544 (656)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEEEET--TEEEECCCCCCCSCCC-
T ss_pred             HHHHHHHH-HHHHHhCCccccccchHhEEEeCC--CCEEEEecCCCeecCCC
Confidence            34444444 455678999999999999999875  89999999999988654

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=94.42  E-value=0.029  Score=58.41  Aligned_cols=50  Identities=18%  Similarity=0.251  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-----------------CCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-----------------PHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-----------------~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++                 ++++.|.|||+....+
T Consensus       122 ~~~~qi~~~-l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~  188 (339)
T 1z57_A          122 KMAYQICKS-VNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDD  188 (339)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETT
T ss_pred             HHHHHHHHH-HHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCc
Confidence            344555544 4556789999999999999998632                 4689999999987644

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=94.42  E-value=0.023  Score=61.97  Aligned_cols=49  Identities=29%  Similarity=0.346  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+ ++.+.|.|||+.+.+..
T Consensus       161 ~~~qi~~a-L~~LH~~~ivHrDlkp~NILl~~~-~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          161 YMYQLFRS-LAYIHSFGICHRDIKPQNLLLDPD-TAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             HHHHHHHH-HHHHHTTTEECSCCSGGGEEEETT-TTEEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCccccCCChhhEEEeCC-CCeEEeccchhhhhccc
Confidence            34444443 344568999999999999999865 35688999999987643

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=94.41  E-value=0.02  Score=59.82  Aligned_cols=47  Identities=17%  Similarity=0.321  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||+++.+  +.+.|.|||+...+.
T Consensus       169 ~~~qi~~~-l~~lH~~~ivH~Dlkp~NIl~~~~--~~~kl~Dfg~~~~~~  215 (333)
T 2i1m_A          169 FSSQVAQG-MAFLASKNCIHRDVAARNVLLTNG--HVAKIGDFGLARDIM  215 (333)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGCEEEGG--GEEEBCCCGGGCCGG
T ss_pred             HHHHHHHH-HHHHhcCCcccCCcccceEEECCC--CeEEECccccccccc
Confidence            34444443 345678999999999999999875  799999999998664

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=94.37  E-value=0.031  Score=61.43  Aligned_cols=48  Identities=33%  Similarity=0.410  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +.-+...|++|+|.+|.||++..+  +.+.|.|||+......
T Consensus       294 ~~~qi~~~-l~~LH~~~ivHrDlkp~Nill~~~--~~~kl~DfG~a~~~~~  341 (450)
T 1k9a_A          294 FSLDVCEA-MEYLEGNNFVHRDLAARNVLVSED--NVAKVSDFGLTKEASS  341 (450)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEECTT--SCEEECCCTTCEECC-
T ss_pred             HHHHHHHH-HHHHHhCCeeCCCCCHhhEEECCC--CCEEEeeCCCcccccc
Confidence            34444443 445678999999999999999865  8999999999886653

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=94.37  E-value=0.028  Score=59.08  Aligned_cols=53  Identities=21%  Similarity=0.332  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++ ++.+.|.|||+...+....
T Consensus       132 ~i~~ql~~~-l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~  185 (336)
T 3fhr_A          132 EIMRDIGTA-IQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNA  185 (336)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC----
T ss_pred             HHHHHHHHH-HHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccccc
Confidence            344444443 4556789999999999999998632 3569999999998776543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=94.36  E-value=0.036  Score=59.34  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..|++|+|.+|.||++..+.++.+.|.|||+...+..
T Consensus       177 ~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~  213 (382)
T 2vx3_A          177 ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQ  213 (382)
T ss_dssp             TTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred             CCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccc
Confidence            3589999999999999765467899999999987643

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=94.34  E-value=0.036  Score=56.62  Aligned_cols=48  Identities=13%  Similarity=0.144  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHcC--ccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|  ++|+|.+|.||++..+ ++++.|.|||+.....
T Consensus       134 ~~~qi~~~-l~~lH~~~~~i~H~dikp~Nil~~~~-~~~~kl~Dfg~~~~~~  183 (290)
T 1t4h_A          134 WCRQILKG-LQFLHTRTPPIIHRDLKCDNIFITGP-TGSVKIGDLGLATLKR  183 (290)
T ss_dssp             HHHHHHHH-HHHHHTSSSCCCCSCCCGGGEEESST-TSCEEECCTTGGGGCC
T ss_pred             HHHHHHHH-HHHHHcCCCCEEECCCCHHHEEEECC-CCCEEEeeCCCccccc
Confidence            34444433 34456778  9999999999999743 4899999999986443

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=94.34  E-value=0.031  Score=60.43  Aligned_cols=50  Identities=22%  Similarity=0.365  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|+|.+|.||++..+  .++++.|.|||+...+..
T Consensus       133 i~~qi~~a-l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~  184 (405)
T 3rgf_A          133 LLYQILDG-IHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNS  184 (405)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----
T ss_pred             HHHHHHHH-HHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCC
Confidence            44444443 345578999999999999999431  247999999999987754

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=94.33  E-value=0.027  Score=60.77  Aligned_cols=48  Identities=27%  Similarity=0.326  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+ ++.+.|.|||+...+.
T Consensus       146 ~~~qi~~a-L~~LH~~~ivHrDlkp~Nill~~~-~~~~kL~DFG~a~~~~  193 (394)
T 4e7w_A          146 YMYQLLRS-LAYIHSIGICHRDIKPQNLLLDPP-SGVLKLIDFGSAKILI  193 (394)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEEETT-TTEEEECCCTTCEECC
T ss_pred             HHHHHHHH-HHHHHHCCccCCCCCHHHEEEcCC-CCcEEEeeCCCccccc
Confidence            34444443 344568999999999999999843 4899999999998764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.28  E-value=0.036  Score=64.50  Aligned_cols=64  Identities=20%  Similarity=0.316  Sum_probs=42.6

Q ss_pred             CceecCCHHhHhhcCCCHHH---HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807            2 DGIRLNDCESLEAFGVNKQK---VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus         2 ~G~ki~d~~~l~~~~~d~~~---la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +|..+.+...   .......   ++..++++ +.-+...|++|+|.+|.||+++.   +++.|+|||++..++.
T Consensus       167 ~g~~L~~~~~---~~l~~~~~~~~~~qi~~a-L~~lH~~giiHrDlkp~NIll~~---~~~kl~DFG~a~~~~~  233 (681)
T 2pzi_A          167 GGQSLKRSKG---QKLPVAEAIAYLLEILPA-LSYLHSIGLVYNDLKPENIMLTE---EQLKLIDLGAVSRINS  233 (681)
T ss_dssp             CCEECC-------CCCCHHHHHHHHHHHHHH-HHHHHHTTEECCCCSGGGEEECS---SCEEECCCTTCEETTC
T ss_pred             CCCcHHHHHh---CCCCHHHHHHHHHHHHHH-HHHHHHCCCeecccChHHeEEeC---CcEEEEecccchhccc
Confidence            4555555432   1333333   44444443 45567899999999999999975   4899999999987754

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=94.27  E-value=0.038  Score=56.32  Aligned_cols=51  Identities=16%  Similarity=0.353  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. ..+...|++|+|.+|.||+++.++ ++.+.|.|||+...+..
T Consensus       125 ~i~~qi~~~l-~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~  176 (287)
T 2wei_A          125 RIIKQVFSGI-TYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ  176 (287)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCC
T ss_pred             HHHHHHHHHH-HHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecC
Confidence            3444444443 556789999999999999997642 34799999999876654

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=94.26  E-value=0.034  Score=57.70  Aligned_cols=46  Identities=17%  Similarity=0.289  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHcC--ccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           23 VEEITRAYAHQIYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        23 a~~l~~~~~~qif~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      +..++++ +..+...|  ++|+|.+|.||+++.+  +++.|.|||+.....
T Consensus       143 ~~qi~~a-L~~LH~~~~~ivH~Dikp~NIll~~~--~~~kL~Dfg~a~~~~  190 (309)
T 3p86_A          143 AYDVAKG-MNYLHNRNPPIVHRNLKSPNLLVDKK--YTVKVCDFGLSRLKA  190 (309)
T ss_dssp             HHHHHHH-HHHHHTSSSCCCCTTCCGGGEEECTT--CCEEECCCC------
T ss_pred             HHHHHHH-HHHHHcCCCCEECCCCChhhEEEeCC--CcEEECCCCCCcccc
Confidence            3333333 44556789  9999999999999864  899999999986543

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=94.26  E-value=0.029  Score=59.37  Aligned_cols=49  Identities=24%  Similarity=0.261  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-----------------------CCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-----------------------PPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-----------------------~~g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+                       .++.+.|.|||+....+
T Consensus       142 i~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~  213 (360)
T 3llt_A          142 YCIEILKA-LNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKS  213 (360)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETT
T ss_pred             HHHHHHHH-HHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecC
Confidence            44444443 455679999999999999999741                       14789999999987644

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=94.21  E-value=0.039  Score=58.75  Aligned_cols=51  Identities=20%  Similarity=0.366  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++ ++.+.|.|||+...+.+
T Consensus       132 ~~~~qi~~a-l~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~  183 (362)
T 2bdw_A          132 HCIQQILES-IAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND  183 (362)
T ss_dssp             HHHHHHHHH-HHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred             HHHHHHHHH-HHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence            444455544 4556789999999999999998642 24699999999987754

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=94.19  E-value=0.032  Score=60.95  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..++++ +.-+...|++|+|.+|.||++..++...+.|.|||+.....
T Consensus       203 ~~i~~qi~~a-L~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~  253 (429)
T 3kvw_A          203 RKFAHSILQC-LDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH  253 (429)
T ss_dssp             HHHHHHHHHH-HHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETT
T ss_pred             HHHHHHHHHH-HHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecC
Confidence            3345555544 44557889999999999999987622239999999975543

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=94.18  E-value=0.03  Score=63.55  Aligned_cols=47  Identities=19%  Similarity=0.289  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+...+++
T Consensus       292 ~~qIl~a-L~yLH~~gIvHrDLKPeNILld~~--g~vKL~DFGla~~~~~  338 (576)
T 2acx_A          292 AAEICCG-LEDLHRERIVYRDLKPENILLDDH--GHIRISDLGLAVHVPE  338 (576)
T ss_dssp             HHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--SCEEECCCTTCEECCT
T ss_pred             HHHHHHH-HHHHHHCCEeccCCchheEEEeCC--CCeEEEecccceeccc
Confidence            3344433 445678999999999999999864  8999999999988754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=94.17  E-value=0.038  Score=64.21  Aligned_cols=46  Identities=20%  Similarity=0.283  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+.+..
T Consensus       447 ~~~qi~~a-L~~LH~~gIiHrDLKp~NILl~~~--g~ikL~DFGla~~~  492 (674)
T 3pfq_A          447 YAAEIAIG-LFFLQSKGIIYRDLKLDNVMLDSE--GHIKIADFGMCKEN  492 (674)
T ss_dssp             HHHHHHHH-HHHHHHTSEECCCCCSTTEEECSS--SCEEECCCTTCEEC
T ss_pred             HHHHHHHH-HHHHHhCCeEeccCChhhEEEcCC--CcEEEeecceeecc
Confidence            34444433 455678999999999999999865  89999999998753

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=94.17  E-value=0.039  Score=57.38  Aligned_cols=51  Identities=24%  Similarity=0.319  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||++..++ ++.+.|.|||+...+...
T Consensus       119 ~~~qi~~~-l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~  170 (322)
T 2ycf_A          119 YFYQMLLA-VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET  170 (322)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCC
T ss_pred             HHHHHHHH-HHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecccc
Confidence            44444443 4556789999999999999998642 235999999999888654

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=94.11  E-value=0.037  Score=57.28  Aligned_cols=51  Identities=25%  Similarity=0.492  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++++ +..+...|++|+|.+|.||++..   +++.|.|||+...+....
T Consensus       130 ~~i~~qi~~a-L~~LH~~~ivH~dlkp~NIl~~~---~~~kL~Dfg~~~~~~~~~  180 (313)
T 3cek_A          130 KSYWKNMLEA-VHTIHQHGIVHSDLKPANFLIVD---GMLKLIDFGIANQMQPDT  180 (313)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCCCCCCCGGGEEEET---TEEEECCCSSSCC-----
T ss_pred             HHHHHHHHHH-HHHHHHCCceecCCCcccEEEEC---CeEEEeeccccccccCcc
Confidence            3445555554 45567899999999999999953   799999999999886544

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=94.11  E-value=0.03  Score=59.24  Aligned_cols=49  Identities=27%  Similarity=0.436  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC--CCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP--HRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~--g~lvllDfG~v~~l~   71 (729)
                      ++..++++ +.-+...|++|+|.+|.||++..+.+  +.+.|.|||++..+.
T Consensus       121 ~~~qi~~a-l~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~  171 (342)
T 2qr7_A          121 VLFTITKT-VEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR  171 (342)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred             HHHHHHHH-HHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence            44444444 45567899999999999999865411  359999999998764

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=94.07  E-value=0.035  Score=58.49  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..+++... -+...|++|+|..|.|||++.+  +.+-|-|||+.+.+...
T Consensus       161 ~~i~~qia~gl~-yLH~~~iiHRDLKp~NILl~~~--~~~Ki~DFGla~~~~~~  211 (329)
T 4aoj_A          161 LAVASQVAAGMV-YLAGLHFVHRDLATRNCLVGQG--LVVKIGDFGMSRDIYST  211 (329)
T ss_dssp             HHHHHHHHHHHH-HHHHTTCCCSCCCGGGEEEETT--TEEEECCCC--------
T ss_pred             HHHHHHHHHHHH-HHhcCCeecccccHhhEEECCC--CcEEEcccccceeccCC
Confidence            345555555433 3468999999999999999865  89999999998876543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=94.05  E-value=0.032  Score=59.50  Aligned_cols=51  Identities=18%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC--CCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP--HRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~--g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+ +.-+...|++|+|.+|.||++..++.  .++.|.|||+...+..
T Consensus       119 ~i~~qi~~a-L~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~  171 (361)
T 2yab_A          119 SFIKQILDG-VNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED  171 (361)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCT
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCC
Confidence            344444443 34557899999999999999986521  1799999999987764

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=94.02  E-value=0.047  Score=55.19  Aligned_cols=51  Identities=20%  Similarity=0.271  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-----------------CCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-----------------PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-----------------~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++. ..+...|++|+|.+|.||++..+                 ....+.|.|||+...++.
T Consensus       119 ~i~~qi~~al-~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~  186 (289)
T 1x8b_A          119 DLLLQVGRGL-RYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISS  186 (289)
T ss_dssp             HHHHHHHHHH-HHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTC
T ss_pred             HHHHHHHHHH-HHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCC
Confidence            3445555443 55678999999999999999853                 124799999999887653

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=93.94  E-value=0.034  Score=58.37  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-----------------CCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-----------------PPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-----------------~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||++..+                 .++++.|.|||+.....
T Consensus       127 ~i~~qi~~~-L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~  193 (355)
T 2eu9_A          127 HMAYQLCHA-LRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDH  193 (355)
T ss_dssp             HHHHHHHHH-HHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETT
T ss_pred             HHHHHHHHH-HHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccc
Confidence            344444443 455678999999999999999421                 24789999999987643

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=93.93  E-value=0.045  Score=57.94  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..++ ++.+.|.|||+...+..
T Consensus       135 i~~qi~~a-l~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~  185 (351)
T 3c0i_A          135 YMRQILEA-LRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGE  185 (351)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecC
Confidence            44444444 3456789999999999999998642 24599999999987765

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=93.90  E-value=0.028  Score=58.30  Aligned_cols=49  Identities=18%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..++..+++.. .-+...|++|+|..|.||+++.+  +.+-|-|||+.+.+.
T Consensus       131 ~~i~~qia~gl-~yLH~~~iiHRDlKp~NILl~~~--~~~Ki~DFGla~~~~  179 (299)
T 4asz_A          131 LHIAQQIAAGM-VYLASQHFVHRDLATRNCLVGEN--LLVKIGDFGMSRDVY  179 (299)
T ss_dssp             HHHHHHHHHHH-HHHHHTTCCCSCCSGGGEEECGG--GCEEECCCSCHHHHT
T ss_pred             HHHHHHHHHHH-HHHHhCCcccCccCHhhEEECCC--CcEEECCcccceecC
Confidence            44555555553 33568999999999999999875  899999999986543

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=93.89  E-value=0.038  Score=58.82  Aligned_cols=49  Identities=16%  Similarity=0.240  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..+++.. .-+...+++|+|..|.||+++.+  +.+-|-|||+.+.+..
T Consensus       189 ~~~~qia~gl-~yLH~~~iiHRDLK~~NILl~~~--~~vKi~DFGlar~~~~  237 (353)
T 4ase_A          189 CYSFQVAKGM-EFLASRKCIHRDLAARNILLSEK--NVVKICDFGLARDIYK  237 (353)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCSCCSGGGEEECGG--GCEEECCCGGGSCTTT
T ss_pred             HHHHHHHHHH-HhHhhCCeecCccCccceeeCCC--CCEEECcchhhhhccc
Confidence            3455555543 34678999999999999999875  8999999999987754

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=93.79  E-value=0.03  Score=59.71  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~   69 (729)
                      .++..++++ +.-+...|++|+|.+|.||+++.++ +..+.|.|||+...
T Consensus       185 ~i~~qi~~a-L~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~  233 (367)
T 3l9p_A          185 HVARDIACG-CQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARD  233 (367)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHH
T ss_pred             HHHHHHHHH-HHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccc
Confidence            344454443 4556789999999999999998642 23589999998753

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=93.78  E-value=0.031  Score=60.23  Aligned_cols=51  Identities=20%  Similarity=0.388  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC--CCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+ +..+...|++|+|.+|.||++..+  +++.+.|.|||+...+...
T Consensus       117 i~~qi~~a-L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~  169 (396)
T 4eut_A          117 VLRDVVGG-MNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDD  169 (396)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCG
T ss_pred             HHHHHHHH-HHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCC
Confidence            34444433 455678999999999999998432  2356899999999877643

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=93.77  E-value=0.017  Score=61.39  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=29.6

Q ss_pred             cCccccCCCCCCeEEecCCCCC-eEEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHR-PILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~-lvllDfG~v~~l~~~~   74 (729)
                      .+++|+|.|||||++++++ ++ +.+|||+++..=++..
T Consensus       216 ~~lvHgD~~~~Nil~~~~~-~~v~~viDwe~a~~g~p~~  253 (359)
T 3dxp_A          216 TSIVHGDYRLDNLMFHPTE-PRVLAVLDWELSTLGHPMG  253 (359)
T ss_dssp             CEEECSSCSGGGEEECSSS-SCEEEECCCTTCEEECHHH
T ss_pred             ceEEeCCCCCCcEEEeCCC-CcEEEEECccccccCCHHH
Confidence            5799999999999998752 24 5899999988766543

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=93.75  E-value=0.022  Score=59.59  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++.|+|.|||||+++ +   .++||||+.++.=+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~---~~~lIDfe~a~~g~~~  227 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D---GPMFVDLDDARNGPAV  227 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S---SEEECCCTTCCEECTT
T ss_pred             CeeeeeCCCCcccEeEc-C---CCEEEECCCCCcCcHH
Confidence            45689999999999996 3   7999999887665543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=93.69  E-value=0.051  Score=58.24  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+  |++.|.|||....+
T Consensus       133 ~~~qi~~~-l~~LH~~~ivHrDlkp~NIll~~~--~~~kl~dfg~~~~~  178 (389)
T 3gni_B          133 ILQGVLKA-LDYIHHMGYVHRSVKASHILISVD--GKVYLSGLRSNLSM  178 (389)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--CCEEECCGGGCEEC
T ss_pred             HHHHHHHH-HHHHHhCCeecCCCCHHHEEEcCC--CCEEEcccccceee
Confidence            33344433 455678999999999999999865  89999999987654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=93.62  E-value=0.038  Score=59.00  Aligned_cols=33  Identities=18%  Similarity=0.408  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHc-CccccCCCCCCeEEecC
Q 004807           21 KVVEEITRAYAHQIYVD-GFFNGDPHPGNFLVSKD   54 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~-GffHaDPHPGNilv~~d   54 (729)
                      .++..++.+. .-+... |++|+|.+|.||++..+
T Consensus       150 ~i~~qi~~aL-~~lH~~~givHrDikp~NIll~~~  183 (397)
T 1wak_A          150 KIIQQVLQGL-DYLHTKCRIIHTDIKPENILLSVN  183 (397)
T ss_dssp             HHHHHHHHHH-HHHHHTTCEECCCCSGGGEEECCC
T ss_pred             HHHHHHHHHH-HHHHHhCCEecCCCCHHHeeEecc
Confidence            3444444433 345566 99999999999999864

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=93.58  E-value=0.04  Score=61.40  Aligned_cols=47  Identities=23%  Similarity=0.406  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++++ +.-+...|++|+|.+|.||++..+  +.+.|.|||+...+..
T Consensus       324 ~~qi~~~-L~~LH~~~ivHrDlkp~NIll~~~--~~~kl~DFG~a~~~~~  370 (495)
T 1opk_A          324 ATQISSA-MEYLEKKNFIHRNLAARNCLVGEN--HLVKVADFGLSRLMTG  370 (495)
T ss_dssp             HHHHHHH-HHHHHHTTEECSCCSGGGEEECGG--GCEEECCTTCEECCTT
T ss_pred             HHHHHHH-HHHHHhCCcccCCCChhhEEECCC--CcEEEeecccceeccC
Confidence            3344443 455678999999999999999864  8999999999887643

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=93.57  E-value=0.047  Score=56.91  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      -.++..+++.. .-+...|++|+|..|.|||++.+  +.+-+-|||+.+.+..
T Consensus       148 ~~i~~qia~gl-~yLH~~~iiHRDLK~~NILl~~~--~~~Ki~DFGlar~~~~  197 (308)
T 4gt4_A          148 VHLVAQIAAGM-EYLSSHHVVHKDLATRNVLVYDK--LNVKISDLGLFREVYA  197 (308)
T ss_dssp             HHHHHHHHHHH-HHHHHTTCCCSCCSGGGEEECGG--GCEEECCSCCBCGGGG
T ss_pred             HHHHHHHHHHH-HHHHhCCCCCCCccccceEECCC--CCEEECCcccceeccC
Confidence            34455555443 34568999999999999999865  8999999999987654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=93.52  E-value=0.066  Score=55.28  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC-CCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP-HRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~-g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..++. +.+.|.|||+...+..
T Consensus       116 i~~qi~~~-l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~  166 (316)
T 2ac3_A          116 VVQDVASA-LDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL  166 (316)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred             HHHHHHHH-HHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence            44444443 44567899999999999999986521 2399999999887653

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=93.51  E-value=0.06  Score=58.53  Aligned_cols=52  Identities=23%  Similarity=0.300  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +..+...|++|+|.+|.||++..++ ++.+.|.|||+...++..
T Consensus       243 ~i~~qi~~~-l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~  295 (419)
T 3i6u_A          243 LYFYQMLLA-VQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET  295 (419)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC--
T ss_pred             HHHHHHHHH-HHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceecCCC
Confidence            344555544 4456789999999999999997531 246999999999988754

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=93.45  E-value=0.015  Score=60.57  Aligned_cols=34  Identities=21%  Similarity=0.173  Sum_probs=27.6

Q ss_pred             HcCccccCCCCCCeEEecCCCCCe-EEEecccccccCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRP-ILLDFGLTKKLSS   72 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~l-vllDfG~v~~l~~   72 (729)
                      ..++.|+|.||+||++..+   ++ ++|||+.+..=+.
T Consensus       186 ~~~liHgDl~~~Nil~~~~---~~~~lIDf~~a~~g~~  220 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGD---ELSGLIDFYFACNDLL  220 (322)
T ss_dssp             CEEEECSCCCGGGEEEETT---EEEEECCCTTCEEEEH
T ss_pred             CcccCCCCCCccCEEEeCC---ceEEEecchhccCchh
Confidence            4689999999999999753   55 7999998876443

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=93.44  E-value=0.019  Score=59.70  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=29.7

Q ss_pred             cCccccCCCCCCeEEecC-CCCCe-EEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKD-PPHRP-ILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d-~~g~l-vllDfG~v~~l~~~~   74 (729)
                      ..++|+|.||||+++.++ .++++ ++|||+.+..=++..
T Consensus       190 ~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd~~~  229 (306)
T 3tdw_A          190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDY  229 (306)
T ss_dssp             CEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEECGGG
T ss_pred             CeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCCCHHH
Confidence            377999999999999861 12576 799999888766654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=93.29  E-value=0.046  Score=56.93  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEeccccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKL   70 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l   70 (729)
                      .++..++++ +..+...|++|+|.+|.||+++.++ +..+.|.|||+...+
T Consensus       144 ~i~~qi~~a-l~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~  193 (327)
T 2yfx_A          144 HVARDIACG-CQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI  193 (327)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHH
T ss_pred             HHHHHHHHH-HHHHhhCCeecCcCCHhHEEEecCCCcceEEECcccccccc
Confidence            344454443 4556789999999999999998542 246999999987643

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=93.21  E-value=0.043  Score=63.27  Aligned_cols=49  Identities=24%  Similarity=0.416  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +.-+...|++|+|.+|.||++..+  +.+.|.|||+.+.+...
T Consensus       474 i~~qi~~~-L~yLH~~~iiHrDLkp~NILl~~~--~~~kL~DFGla~~~~~~  522 (635)
T 4fl3_A          474 LVHQVSMG-MKYLEESNFVHRDLAARNVLLVTQ--HYAKISDFGLSKALRAD  522 (635)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEEEET--TEEEECCTTHHHHTTC-
T ss_pred             HHHHHHHH-HHHHHHCCEeCCCCChHhEEEeCC--CCEEEEEcCCccccccC
Confidence            44444443 445578999999999999999875  78999999998776543

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=93.20  E-value=0.085  Score=57.66  Aligned_cols=55  Identities=24%  Similarity=0.372  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC---CCCCeEEEecccccccCHH
Q 004807           18 NKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD---PPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        18 d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d---~~g~lvllDfG~v~~l~~~   73 (729)
                      ....++..++++. .-+...|++|+|.+|.||++..+   +..++.|.|||+...+...
T Consensus       119 ~~~~i~~qi~~aL-~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~  176 (432)
T 3p23_A          119 EPITLLQQTTSGL-AHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVG  176 (432)
T ss_dssp             CHHHHHHHHHHHH-HHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC---
T ss_pred             hHHHHHHHHHHHH-HHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCC
Confidence            4556777766654 44578999999999999999642   2236779999999988654

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=93.02  E-value=0.022  Score=60.27  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++.|+|+|||||+++++  +.+++|||+.++.-++..
T Consensus       205 ~~~~~HgD~~~~N~l~~~~--~~~~~iD~e~~~~~~~~~  241 (339)
T 3i1a_A          205 KYVLCHSDIHAGNVLVGNE--ESIYIIDWDEPMLAPKER  241 (339)
T ss_dssp             GCEEECSCCCGGGEEECGG--GCEEECCCSSCEEECTHH
T ss_pred             CceeEeCCCCcCCEEEeCC--CeEEEEECCCCeeCCHHH
Confidence            5679999999999999764  689999999888766654

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=92.98  E-value=0.047  Score=57.10  Aligned_cols=50  Identities=18%  Similarity=0.248  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC---CCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD---PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d---~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++..+   .++.+.|.|||+...+..
T Consensus       137 i~~ql~~~-l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~  189 (329)
T 3gbz_A          137 FLYQLING-VNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGI  189 (329)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-
T ss_pred             HHHHHHHH-HHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCC
Confidence            44444443 445678999999999999999643   124699999999876643

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=92.94  E-value=0.084  Score=54.24  Aligned_cols=50  Identities=24%  Similarity=0.450  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEec-CCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSK-DPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~-d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +..+...|++|+|.+|.||++.. +.++++.|.|||+......
T Consensus       111 ~~~qi~~~-l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~  161 (304)
T 2jam_A          111 VIQQVLSA-VKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQN  161 (304)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCC
T ss_pred             HHHHHHHH-HHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCC
Confidence            34444443 45567899999999999999942 2347899999999876543

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=92.84  E-value=0.071  Score=56.46  Aligned_cols=50  Identities=14%  Similarity=0.147  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHc-CccccCCCCCCeEEecCC----CCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVD-GFFNGDPHPGNFLVSKDP----PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~-GffHaDPHPGNilv~~d~----~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+... |++|+|.+|.||++..++    .+++.|.|||+...++.
T Consensus       136 i~~qi~~a-L~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~  190 (373)
T 1q8y_A          136 ISKQLLLG-LDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE  190 (373)
T ss_dssp             HHHHHHHH-HHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB
T ss_pred             HHHHHHHH-HHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCC
Confidence            44444443 3445666 999999999999996531    24799999999877653

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=92.78  E-value=0.081  Score=57.80  Aligned_cols=53  Identities=30%  Similarity=0.422  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-----------CCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-----------PPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-----------~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++.+. .-+...|++|+|.+|.||++..+           .++++.|.|||++..+...
T Consensus       118 ~~i~~qi~~aL-~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~  181 (434)
T 2rio_A          118 ISLLRQIASGV-AHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSG  181 (434)
T ss_dssp             HHHHHHHHHHH-HHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC-
T ss_pred             HHHHHHHHHHH-HHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCC
Confidence            45666666654 44578999999999999999753           2357999999999988754

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=92.75  E-value=0.026  Score=59.82  Aligned_cols=41  Identities=20%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHHHH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQAL   78 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~~l   78 (729)
                      ...++|+|.|||||+++.  ++.+++|||+.+..=++..=.++
T Consensus       221 ~~~l~HgDl~~~Nil~~~--~~~~~vIDwe~a~~g~p~~Dla~  261 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRD--FQPVAVLDWEMVALGPRELDVAW  261 (357)
T ss_dssp             CCEEECSSCSGGGEEEET--TEEEEECCGGGCEEECHHHHHHH
T ss_pred             CceEEeCCCCCCeEEEeC--CcEEEEEcccccccCCcHHHHHH
Confidence            357899999999999983  23469999999998776654443

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=92.73  E-value=0.073  Score=54.98  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=25.1

Q ss_pred             cCccccCCCCCCeEEecCCCCC-eEEEecccccccCH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHR-PILLDFGLTKKLSS   72 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~-lvllDfG~v~~l~~   72 (729)
                      .|++|+|.+|.||++..+  +. +.|.|||+...+..
T Consensus       124 ~~ivH~dlkp~NIll~~~--~~~~kl~Dfg~~~~~~~  158 (307)
T 2eva_A          124 KALIHRDLKPPNLLLVAG--GTVLKICDFGTACDIQT  158 (307)
T ss_dssp             SCCCCCCCSGGGEEEETT--TTEEEECCCCC------
T ss_pred             CCeecCCCChhHEEEeCC--CCEEEEccccccccccc
Confidence            689999999999999865  55 78999999876543

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=92.58  E-value=0.067  Score=59.21  Aligned_cols=51  Identities=16%  Similarity=0.394  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +..+...|++|+|.+|.||++... .++.+.|.|||+...+..
T Consensus       130 ~i~~qi~~~-l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  181 (484)
T 3nyv_A          130 RIIRQVLSG-ITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA  181 (484)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred             HHHHHHHHH-HHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence            344454443 345678999999999999999531 247899999999876553

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=92.49  E-value=0.029  Score=58.04  Aligned_cols=37  Identities=14%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..+.|+|.|||||+++++.++.+.+|||+.+..-++.
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~  227 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPD  227 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTT
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChH
Confidence            4689999999999998642234689999998776554

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=92.36  E-value=0.13  Score=56.87  Aligned_cols=51  Identities=16%  Similarity=0.340  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++++ +..+...|++|+|.+|.||++... .++.+.|+|||+...+...
T Consensus       126 i~~qi~~a-l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~  177 (486)
T 3mwu_A          126 IIKQVFSG-ITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQN  177 (486)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC
T ss_pred             HHHHHHHH-HHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCC
Confidence            44444443 445678999999999999999642 2467999999998876543

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=92.00  E-value=0.037  Score=59.03  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=27.1

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++.|+|+|||||++..   ++++||||..++.=++
T Consensus       211 ~~~l~HgDl~~~Nil~~~---~~~~lID~e~a~~g~~  244 (369)
T 3c5i_A          211 TIVFCHNDLQENNIINTN---KCLRLIDFEYSGFNFL  244 (369)
T ss_dssp             CEEEECSCCCGGGEEECC----CEEECCCTTCEEEEH
T ss_pred             CeEEEeCCCCcccEEecC---CcEEEEEecCCCCCch
Confidence            357899999999999964   4699999988875443

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=91.74  E-value=0.16  Score=58.54  Aligned_cols=53  Identities=19%  Similarity=0.378  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC-CCeEEEecccccccCH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP-HRPILLDFGLTKKLSS   72 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~-g~lvllDfG~v~~l~~   72 (729)
                      ...++..++.+ +..+...|++|+|.+|.||++..+++ ..+.|.|||+...++.
T Consensus       123 i~~I~~QLl~a-L~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~  176 (676)
T 3qa8_A          123 IRTLLSDISSA-LRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQ  176 (676)
T ss_dssp             HHHHHHHHHHH-HHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTS
T ss_pred             HHHHHHHHHHH-HHHHHHCCCccCCCCHHHeEeecCCCceeEEEccccccccccc
Confidence            34555555554 45567899999999999999987521 1277999999987654

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=91.74  E-value=0.1  Score=57.93  Aligned_cols=50  Identities=16%  Similarity=0.337  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~   71 (729)
                      .++..++++ +..+...|++|+|.+|.||++...+ ++.+.|.|||+...+.
T Consensus       140 ~i~~qi~~~-l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~  190 (494)
T 3lij_A          140 VIIKQVLSG-VTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFE  190 (494)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECB
T ss_pred             HHHHHHHHH-HHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECC
Confidence            344555444 4456789999999999999997532 3569999999987764

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=91.66  E-value=0.049  Score=56.27  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..+.|+|.|||||++.   +++++||||..++.=++..
T Consensus       173 ~~l~HgDl~~~Nil~~---~~~~~lID~e~a~~g~~~~  207 (301)
T 3dxq_A          173 LAACHCDPLCENFLDT---GERMWIVDWEYSGMNDPLW  207 (301)
T ss_dssp             CEEECSCCCGGGEEEC---SSCEEECCCTTCEEECTHH
T ss_pred             ceeeccCCCcCCEEEC---CCCEEEEecccccCCCHHH
Confidence            3589999999999943   3789999999887655543

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=91.64  E-value=0.13  Score=57.32  Aligned_cols=50  Identities=20%  Similarity=0.349  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC-CCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP-HRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~-g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +..+...|++|+|.+|.||++..++. .++.|.|||+...++.
T Consensus       151 i~~qi~~~-l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~  201 (504)
T 3q5i_A          151 IMKQILSG-ICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSK  201 (504)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCT
T ss_pred             HHHHHHHH-HHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCC
Confidence            44444443 44567899999999999999986521 2699999999987654

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=91.59  E-value=0.043  Score=60.05  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             cCccccCCCCCCeEEecCC--------------------------CCCeEEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDP--------------------------PHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~--------------------------~g~lvllDfG~v~~l~~~~   74 (729)
                      ..|.|+|.|||||++..+.                          ++.++||||..++.=++.+
T Consensus       249 ~v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~~g~p~~  312 (429)
T 1nw1_A          249 VTFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASYNYRAF  312 (429)
T ss_dssp             EEEECSCCCGGGEEEEC------------------------------CCEECCCTTCEEEEHHH
T ss_pred             eEEEeCCCCCCeEEeeCCccccccccccccccccccccccccccCCCeEEEEecccCCcCccHH
Confidence            4789999999999998741                          1679999999988766643

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=91.09  E-value=0.077  Score=55.37  Aligned_cols=28  Identities=11%  Similarity=0.118  Sum_probs=23.9

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEeccc
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGL   66 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~   66 (729)
                      ...++|+|.|+||++++.+  + +++|||.+
T Consensus       206 ~~~l~HgD~~~~N~l~~~~--~-~~~iD~~~  233 (312)
T 3jr1_A          206 KPSILHGNLWIENCIQVDD--K-IFVCNPAC  233 (312)
T ss_dssp             CCEEECSSCSGGGEEEETT--E-EEECSCCC
T ss_pred             CceeEeCCCCcCcEeecCC--C-eEEEcCcc
Confidence            4578999999999999864  5 99999954

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=90.93  E-value=0.062  Score=59.27  Aligned_cols=38  Identities=11%  Similarity=0.100  Sum_probs=30.5

Q ss_pred             cCccccCCCCCCeEEecC-----------------------------------CCCCeEEEecccccccCHHH
Q 004807           37 DGFFNGDPHPGNFLVSKD-----------------------------------PPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d-----------------------------------~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..|.|+|.|+|||++..+                                   ++++++||||-.++.=++.+
T Consensus       290 ~v~cHnDl~~gNIL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lIDfEya~~gdp~~  362 (458)
T 2qg7_A          290 IVLCHCDLLSSNIINTVGGGEAGELGEAGETGEGGETGEGGETGEGGETGEGGEGDSISFIDFEYSCPMERAY  362 (458)
T ss_dssp             EEEECSCCCGGGEEECCC-----------------------------------CCCCEEECCCTTCEEEEHHH
T ss_pred             eeEEecCCCCCcEEeecccccccccccccccccccccccccccccccccccCCCCCeEEEEeecCCCCCCcHH
Confidence            478999999999999821                                   24689999999988766644

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=87.38  E-value=0.18  Score=54.03  Aligned_cols=37  Identities=22%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             cCccccCCCCCCeEEecC--CCCCeEEEecccccccCHH
Q 004807           37 DGFFNGDPHPGNFLVSKD--PPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d--~~g~lvllDfG~v~~l~~~   73 (729)
                      ..+.|+|.|+|||++.++  +++.++||||-.++.=++.
T Consensus       220 ~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~~~~  258 (379)
T 3feg_A          220 VVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYNYRG  258 (379)
T ss_dssp             EEEECSCCCGGGEEEESCC---CCEEECCCTTCEEEEHH
T ss_pred             cEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcCChH
Confidence            478999999999999864  2368999999999876554

>2x02_A Beta-lactamase OXA-10; class D, hydrolase, antibiotic resistance; HET: KCX PG4; 1.35A {Pseudomonas aeruginosa} PDB: 1k4e_A* 1k6r_A* 1k6s_A* 1k4f_A* 2x01_A* 2wgv_A* 2wgw_A* 2wkh_A* 2wki_A 2rl3_A* 2hpb_A 2hp9_A 2hp6_A 2wgi_A* 2hp5_A 1fof_A 1k55_A* 1e4d_A* 1ewz_A 1k54_A* ...

Probab=84.70  E-value=0.89  Score=45.45  Aligned_cols=60  Identities=13%  Similarity=0.030  Sum_probs=38.2

Q ss_pred             hccCCCCceEEEEEE-ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhh
Q 004807          241 LGNDGKILGIQVCAY-KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIAN  314 (729)
Q Consensus       241 ~~~~~~~~G~sv~v~-~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~  314 (729)
                      ++++.+..|..+++- +.|+++.   |.        +......|..||..|.+|+++.   .|+|++++++.+.+
T Consensus        13 ~~~~~~~~~~~vv~d~~tG~ila---~~--------~nra~~~~~pgStfK~~~~~aa---Le~g~~~~~~~i~~   73 (248)
T 2x02_A           13 EFSAEAVNGVFVLCKSSSKSCAT---ND--------LARASKEYLPASTFKIPNAIIG---LETGVIKNEHQVFK   73 (248)
T ss_dssp             HHHTTTCCEEEEEEESSTTSEEE---SC--------HHHHTCEECCGGGGHHHHHHHH---HHHTSSCCTTCEEC
T ss_pred             HHHhhCCCEEEEEEECCCCCEEE---EC--------chhhcCCCCChHHHHHHHHHHH---HHcCCCCCCCeEEe
Confidence            333344445443332 5788775   21        0011244999999999998774   46899999988864

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=83.96  E-value=1  Score=44.61  Aligned_cols=45  Identities=4%  Similarity=-0.012  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHcC--ccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           22 VVEEITRAYAHQIYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        22 la~~l~~~~~~qif~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      ++..++++ +..+...|  ++|+|.+|.||+++.+  +.+.+.|||....
T Consensus       116 i~~qi~~~-l~~lH~~~~~i~H~dikp~Nil~~~~--~~~~l~~~~~~~~  162 (271)
T 3kmu_A          116 FALDMARG-MAFLHTLEPLIPRHALNSRSVMIDED--MTARISMADVKFS  162 (271)
T ss_dssp             HHHHHHHH-HHHHTTSSSCCTTCCCSGGGEEECTT--SCEEEEGGGSCCT
T ss_pred             HHHHHHHH-HHHHhcCCCceecCCCccceEEEcCC--cceeEEeccceee
Confidence            33333333 33445668  9999999999999865  6666666665443

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=81.83  E-value=0.36  Score=49.25  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=22.5

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccc
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLT   67 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v   67 (729)
                      .++|+|.|+||++++++   ..++||-.+.
T Consensus       189 ~LvHGDlw~gNvl~~~~---g~~~iDp~~~  215 (288)
T 3f7w_A          189 ARIHGDLWNGNVLWQDD---GAVVIDPAAH  215 (288)
T ss_dssp             EEECSCCSGGGEEEETT---EEEECSCCCE
T ss_pred             eeeecCCCCCcEEEcCC---CeEEEecccc
Confidence            68999999999999875   3678897654

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=81.32  E-value=0.48  Score=51.02  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=27.8

Q ss_pred             CccccCCCCCCeEEecC----CCCCeEEEecccccccCH
Q 004807           38 GFFNGDPHPGNFLVSKD----PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        38 GffHaDPHPGNilv~~d----~~g~lvllDfG~v~~l~~   72 (729)
                      .|.|.|.++|||++.++    .+++|+||||=..+.=++
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n~~  283 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYNYR  283 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEEEH
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhccCCCc
Confidence            46799999999999652    246799999988776555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	729
d1ci9a_	377	e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli	9e-22
d2drwa1	362	e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochro	8e-21
d1onha_	363	e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterob	1e-18
d2hdsa1	358	e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Es	3e-18
d1ei5a3	333	e.3.1.1 (A:3-335) D-aminopeptidase, N-terminal dom	5e-17
d1yqsa1	345	e.3.1.1 (A:3-347) D-ala carboxypeptidase/transpept	5e-15

>d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId: 28095]} Length = 377

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Esterase EstB
species: Burkholderia gladioli [TaxId: 28095]

 Score = 95.6 bits (236), Expect = 9e-22
 Identities = 72/319 (22%), Positives = 122/319 (38%), Gaps = 29/319 (9%)

Query: 228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFS 287
           + + A+L     +   + +++G      + GE++   + G+  R   RP++ D+LF + S
Sbjct: 2   ASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLAS 61

Query: 288 VTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGK----DLIKVHHVLNHTSGLHNVS 343
           VTK I A  +  LV  G+L L+  +    PEF+         L+ +HH+L HTSGL    
Sbjct: 62  VTKPIVALAVLRLVARGELALDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWL 121

Query: 344 VD----------LSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIE 393
           ++          +S    L   D DE L R+A +     PG    + Y     + G ++E
Sbjct: 122 LEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFAPGSG--WQYSLALDVLGAVVE 179

Query: 394 RASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLR 453
           RA+G+     ++  + QPL +      G       R A    D             P   
Sbjct: 180 RATGQPLAAAVDALVAQPLGMR---DCGFVSAEPERFAVPYHDGQP---------EPVRM 227

Query: 454 LPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAA-LADGGVVPPP 512
                 P      AA+  A   +          A  + SA  + R   A  A+ G +P  
Sbjct: 228 RDGIEVPLPEGHGAAVRFAPSRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPET 287

Query: 513 HSRLSKPPLGSHPHIPKFP 531
            +  ++          + P
Sbjct: 288 LADAARRDQAGVGAETRGP 306

>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]} Length = 362

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-Amino acid amidase DaaA
species: Ochrobactrum anthropi [TaxId: 529]

 Score = 92.5 bits (228), Expect = 8e-21
 Identities = 50/284 (17%), Positives = 95/284 (33%), Gaps = 18/284 (6%)

Query: 228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFS 287
           SD+   ++  L +    G ++G+ +     GE      +G   +++  P+  D LF + S
Sbjct: 1   SDLNNAIQGILDDHVARG-VVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIAS 59

Query: 288 VTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLS 347
            TK   A  LH LV +G + L+E I   +P+        + V  +LNH SGL +    + 
Sbjct: 60  CTKSFIATGLHLLVQDGTVDLDEPITRWFPDL--PKAAQMPVRILLNHRSGLPDFETSMP 117

Query: 348 SENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEG 407
             +       +      +      +     + +  +   L G II   +GK + + L   
Sbjct: 118 MISDKSWTAQEIV--DFSFRHGVQKEPWHGMEYSNTGYVLAGMIIAHETGKPYSDHLRSR 175

Query: 408 IIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA 467
           I  PL +              R A   +     ++    +                    
Sbjct: 176 IFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGAGDPVDGVWDS------ 229

Query: 468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPP 511
                             A +   + R + ++  AL DG ++  
Sbjct: 230 -------TEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQ 266

>d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]} Length = 363

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: AMPC beta-Lactamase, class C
species: Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]

 Score = 86.3 bits (212), Expect = 1e-18
 Identities = 42/218 (19%), Positives = 89/218 (40%), Gaps = 10/218 (4%)

Query: 225 PIHSD-VEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLF 283
           P+    +   + + +  L     + G+ V     G+     + G       +PV P +LF
Sbjct: 1   PVSEKQLAEVVANTVTPLMKAQSVPGMAVAVIYQGKPHYY-TFGKADIAANKPVTPQTLF 59

Query: 284 PVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVS 343
            + S++K  T  +    +  G++ L++ +   WP+        I++  +  +T+G   + 
Sbjct: 60  ELGSISKTFTGVLGGDAIARGEISLDDPVTRYWPQLTGKQWQGIRMLDLATYTAGGLPL- 118

Query: 344 VDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEI 403
                + P  + D    L       P+ +PG  +LY   S   L G +  + SG  +++ 
Sbjct: 119 -----QVPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASI-GLFGALAVKPSGMPYEQA 172

Query: 404 LEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLN 441
           +   +++PL +D   +I +P   E+  A    D   + 
Sbjct: 173 MTTRVLKPLKLD-HTWINVPKAEEAHYAWGYRDGKAVR 209

>d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]} Length = 358

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: AMPC beta-Lactamase, class C
species: Escherichia coli, cephalosporinase [TaxId: 562]

 Score = 84.8 bits (208), Expect = 3e-18
 Identities = 53/270 (19%), Positives = 106/270 (39%), Gaps = 9/270 (3%)

Query: 229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSV 288
            +   +   +  L    KI G+ V     G+     + G       +PV   +LF + SV
Sbjct: 4   QINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYF-TWGYADIAKKQPVTQQTLFELGSV 62

Query: 289 TKGITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS 348
           +K  T  +    +  G++KL +     WPE  +   + I + H+  +T+G       L  
Sbjct: 63  SKTFTGVLGGDAIARGEIKLSDPTTKYWPELTAKQWNGITLLHLATYTAGG------LPL 116

Query: 349 ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGI 408
           + P  +    + L       P   PG ++LY   S   L G +  + SG  F++ ++  +
Sbjct: 117 QVPDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSI-GLFGALAVKPSGLSFEQAMQTRV 175

Query: 409 IQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAA 468
            QPL ++   +I +PP  E   A    +   ++   G  +     + S+ +       + 
Sbjct: 176 FQPLKLN-HTWINVPPAEEKNYAWGYREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSN 234

Query: 469 ITPAVFNMLNIRRAIIPAANGHCSARALAR 498
           + P   N   +++ I  A + +     + +
Sbjct: 235 LKPLDINEKTLQQGIQLAQSRYWQTGDMYQ 264

>d1ei5a3 e.3.1.1 (A:3-335) D-aminopeptidase, N-terminal domain {Ochrobactrum anthropi [TaxId: 529]} Length = 333

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-aminopeptidase, N-terminal domain
species: Ochrobactrum anthropi [TaxId: 529]

 Score = 80.9 bits (198), Expect = 5e-17
 Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 6/182 (3%)

Query: 232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKG 291
           + L  F+  +  + K  G  V   KDGEV++  + G        P+  D+  P+ SV+K 
Sbjct: 5   SALEAFVRHIPQNYKGPGGVVAVVKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQ 64

Query: 292 ITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSV--DLSSE 349
            T  +L   V   +  L++ +     +F+    +   V  + N+ SGL +      L   
Sbjct: 65  FTCAVLLDAVGEPE-LLDDALEAYLDKFE---DERPAVRDLCNNQSGLRDYWALSVLCGA 120

Query: 350 NPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGII 409
           +P  +    +  + +               +      +   +IE  +G+   +IL E I 
Sbjct: 121 DPEGVFLPAQAQSLLRRLKTTHFEPGSHYSYCNGNFRILADLIEAHTGRTLVDILSERIF 180

Query: 410 QP 411
            P
Sbjct: 181 AP 182

>d1yqsa1 e.3.1.1 (A:3-347) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., R61 [TaxId: 1931]} Length = 345

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-ala carboxypeptidase/transpeptidase
species: Streptomyces sp., R61 [TaxId: 1931]

 Score = 74.8 bits (182), Expect = 5e-15
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 11/165 (6%)

Query: 231 EAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTK 290
           +  L+  L    + G   G  V    +G  I   S G+  R   R +     F V SVTK
Sbjct: 6   DTGLQAVLHTALSQG-APGAMVRVDDNGT-IHQLSEGVADRATGRAITTTDRFRVGSVTK 63

Query: 291 GITAGMLHWLVDNGKLKLEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSE- 349
             +A +L  LVD GKL L+ ++    P       D I V  V++H SGL++ + D+ ++ 
Sbjct: 64  SFSAVVLLQLVDEGKLDLDASVNTYLPGL--LPDDRITVRQVMSHRSGLYDYTNDMFAQT 121

Query: 350 ------NPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLC 388
                     +  + + +           PG    Y   +F    
Sbjct: 122 VPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTNFVVAG 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	729
d2drwa1	362	D-Amino acid amidase DaaA {Ochrobactrum anthropi [	100.0
d1ci9a_	377	Esterase EstB {Burkholderia gladioli [TaxId: 28095	100.0
d1yqsa1	345	D-ala carboxypeptidase/transpeptidase {Streptomyce	100.0
d1onha_	363	AMPC beta-Lactamase, class C {Enterobacter cloacae	100.0
d2hdsa1	358	AMPC beta-Lactamase, class C {Escherichia coli, ce	100.0
d1ei5a3	333	D-aminopeptidase, N-terminal domain {Ochrobactrum	100.0
d2dcfa1	388	6-aminohexanoate-dimer hydrolase NylC {Flavobacter	100.0
d1tvfa2	301	Pencillin binding protein 4 (PbpD), N-terminal dom	98.21
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	98.19
d1iysa_	261	beta-Lactamase, class A {Escherichia coli, TOHO-1	98.05
d1m40a_	263	beta-Lactamase, class A {Escherichia coli, TEM-1 [	98.03
d1g6aa_	266	beta-Lactamase, class A {Pseudomonas aeruginosa, P	97.95
d2cc1a1	262	beta-Lactamase, class A {Mycobacterium fortuitum [	97.93
d1o7ea_	267	beta-Lactamase, class A {Stenotrophomonas maltophi	97.9
d1e25a_	278	beta-Lactamase, class A {Pseudomonas aeruginosa, P	97.86
d1n9ba_	265	beta-Lactamase, class A {Klebsiella pneumoniae, SH	97.78
d1bsga_	266	beta-Lactamase, class A {Streptomyces albus G [Tax	97.75
d1xp4a2	269	D,D-carboxypeptidase DacA, N-terminal domain {Stre	97.72
d3beca2	259	Penicillin-binding protein 5, N-terminal domain {E	97.71
d1es5a_	260	D-ala carboxypeptidase/transpeptidase {Streptomyce	97.68
d1buea_	265	beta-Lactamase, class A {Enterobacter cloacae, NMC	97.6
d1djaa_	258	beta-Lactamase, class A {Staphylococcus aureus [Ta	97.58
d1i2sa_	255	beta-Lactamase, class A {Bacillus licheniformis [T	97.3
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	96.64
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	96.24
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	96.11
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	96.05
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	96.02
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	95.83
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	95.83
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	95.81
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	95.81
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	95.7
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	95.7
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	95.69
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	95.68
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	95.67
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	95.57
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	95.52
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	95.47
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	95.46
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	95.42
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	95.41
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	95.4
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	95.36
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	95.3
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	95.27
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	95.21
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	95.12
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	95.12
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	95.12
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	95.06
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	95.06
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	95.01
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	94.97
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	94.96
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	94.94
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	94.92
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	94.78
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	94.76
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	94.73
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	94.71
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	94.7
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	94.67
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	94.59
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	94.56
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	94.51
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	94.48
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.39
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	94.16
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	94.12
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	94.09
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	94.07
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	93.97
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	93.96
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	93.91
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	93.86
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	93.85
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	93.8
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	93.71
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	93.67
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	93.52
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	93.35
d1pyya4	368	Penicillin-binding protein 2x (pbp-2x), transpepti	93.33
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	92.73
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	92.55
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	92.11
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	91.67
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	90.81
d2olua2	400	Penicillin-binding protein 2, PBP2 {Staphylococcus	87.99
d1e7ua4	369	Phoshoinositide 3-kinase (PI3K), catalytic domain	80.52

>d2drwa1 e.3.1.1 (A:2-363) D-Amino acid amidase DaaA {Ochrobactrum anthropi [TaxId: 529]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-Amino acid amidase DaaA
species: Ochrobactrum anthropi [TaxId: 529]

Probab=100.00  E-value=3e-51  Score=444.08  Aligned_cols=264  Identities=20%  Similarity=0.262  Sum_probs=209.3

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCc
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKL  308 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~l  308 (729)
                      ++..+|+.++++.++ .+++|++|+|+++|++++..+||++|.+.++|+++||+|+|||+||+|||+++++|+|+|+|+|
T Consensus         2 ~~~~~i~~~~~~~~~-~g~~g~~v~v~~~g~~v~~~~~G~ad~~~~~p~t~dt~f~i~SvsK~~ta~~i~~lve~G~l~l   80 (362)
T d2drwa1           2 DLNNAIQGILDDHVA-RGVVGVSLALCLPGEETSLYQSGYADKFNKMPMTGDHLFRIASCTKSFIATGLHLLVQDGTVDL   80 (362)
T ss_dssp             HHHHHHHHHHHHHHT-TTCCEEEEEEECTTSCEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCCT
T ss_pred             cHHHHHHHHHHHHHH-cCCCeEEEEEEECCEEEEEEeEEEeccccCCCCCCCCeEEeeehHHHHHHHHHHHHHHcCCCCC
Confidence            577899999999887 5689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHHH
Q 004807          309 EENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWLC  388 (729)
Q Consensus       309 dd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~lL  388 (729)
                      ||||.+|+|+++.  .++|||+|||+|||||+++..... .........+++++.+...++.++||+.|.|||.+|. ||
T Consensus        81 dd~v~~ylp~~~~--~~~iTi~~LL~htSGl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~Ysn~~~~-ll  156 (362)
T d2drwa1          81 DEPITRWFPDLPK--AAQMPVRILLNHRSGLPDFETSMP-MISDKSWTAQEIVDFSFRHGVQKEPWHGMEYSNTGYV-LA  156 (362)
T ss_dssp             TSBGGGTCTTSTT--GGGCBGGGGTTTCSCCCCCTTTSB-SSCCCCCCHHHHHHHHHHHSCCCCTTSSCCCCSHHHH-HH
T ss_pred             Cceeeeeeccccc--cccccccccccccCCCCccccccc-cccccccchhHHHHhhhccCccccccceeccccccee-cc
Confidence            9999999999976  468999999999999998654332 2223356788999999999999999999999999998 99


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhc
Q 004807          389 GGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAA  468 (729)
Q Consensus       389 g~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  468 (729)
                      |.|||+++|++|++|++++||+||||++|.|.........+.+..|.................               ..
T Consensus       157 g~iie~~tg~~~~~~~~e~i~~PLgm~~T~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~---------------~~  221 (362)
T d2drwa1         157 GMIIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSGA---------------GD  221 (362)
T ss_dssp             HHHHHHHHTSCHHHHHHHHTHHHHTCCSCEETTTCCCCGGGBCCCEEECBTTCCSCSSBCTTC---------------CC
T ss_pred             cchhhhccCcchhhhhHHHHHhccCCccccccCccccccccccceeecccccccccccccccc---------------cC
Confidence            999999999999999999999999999997744333344555555533221111110000000               00


Q ss_pred             cccccccc--hhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          469 ITPAVFNM--LNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       469 ~~~~~~~~--~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                      ........  ........|+||++||++||+||++++++++.++++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~aGgl~sta~Dla~~~~~ll~~~~l~~~  267 (362)
T d2drwa1         222 PVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQK  267 (362)
T ss_dssp             CBTTEEECTTTSCHHHHGGGTCEEECHHHHHHHHHHHHTTSSSCHH
T ss_pred             ccccccccccccccccccccCceEcCHHHHHHHHHHHhCCCCCCHH
Confidence            00000000  111222358999999999999999999999887765

>d1ci9a_ e.3.1.1 (A:) Esterase EstB {Burkholderia gladioli [TaxId: 28095]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Esterase EstB
species: Burkholderia gladioli [TaxId: 28095]

Probab=100.00  E-value=1.4e-50  Score=441.21  Aligned_cols=270  Identities=24%  Similarity=0.337  Sum_probs=206.4

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK  307 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~  307 (729)
                      +++.++|++++++.+++..+||++++|+++|+++++++||+++.+.+.|++++|+|+|||+||+|||+++++|+|+|+|+
T Consensus         2 a~l~~~id~~~~~~~~~~~~pG~~~~V~~~g~~v~~~~~G~ad~~~~~~~~~~t~f~iaSvtK~~ta~~v~~Lve~G~l~   81 (377)
T d1ci9a_           2 ASLAARLDAVFDQALRERRLVGAVAIVARHGEILYRRAQGLADREAGRPMREDTLFRLASVTKPIVALAVLRLVARGELA   81 (377)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSSC
T ss_pred             chHHHHHHHHHHHHHHhCCCCeEEEEEEECCEEEEEEeEEeeccccCCCCCCCCeEeeeehHHHHHHHHHHHHHHcCCcc
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhccCCccC----CCCCCcHHHHhcCCCCCCCCccCcc----------cCCCcCCCCHHHHHHHHHhcCCCCCC
Q 004807          308 LEENIANIWPEFKSN----GKDLIKVHHVLNHTSGLHNVSVDLS----------SENPLLICDWDECLNRIALSAPETEP  373 (729)
Q Consensus       308 ldd~v~~ylP~~~~~----~~~~iTir~LLtHtSGl~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~P  373 (729)
                      |||||.+|||+|...    .++.|||||||+||||++++.....          ........+.++.++.+...++.++|
T Consensus        82 ldd~v~~ylP~~~~~~~~~~~~~ITi~~Ll~htsGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  161 (377)
T d1ci9a_          82 LDAPVTRWLPEFRPRLADGSEPLVTIHHLLTHTSGLGYWLLEGAGSVYDRLGISDGIDLRDFDLDENLRRLASAPLSFAP  161 (377)
T ss_dssp             TTSBGGGTCTTCCCBCTTSCCCCCBHHHHHHTCSSCCCHHHHCTTSHHHHHTCCCSSSCCSSCHHHHHHHHHHSBCSSCT
T ss_pred             ccccchhhhhhhhcccccccCCceehhhcccccccccccccccchhhhhhhccccccccccCCHHHHHHHHhhCCCcCCC
Confidence            999999999999642    3567999999999999997532211          11222346889999999999999999


Q ss_pred             CCceecccCcHHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCccccc-ccccCCCCCC
Q 004807          374 GQEQLYHYLSFGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNK-VSGINNRPDL  452 (729)
Q Consensus       374 G~~~~Ysn~~~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~  452 (729)
                      |+.|.||| +|. |||.|||+++|++|++|++++||+||||++|+|....   ..+.+..|........ .......   
T Consensus       162 G~~~~Ys~-~~~-lLg~iie~vtg~~~~~~~~e~i~~PLGm~~t~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~---  233 (377)
T d1ci9a_         162 GSGWQYSL-ALD-VLGAVVERATGQPLAAAVDALVAQPLGMRDCGFVSAE---PERFAVPYHDGQPEPVRMRDGIEV---  233 (377)
T ss_dssp             TSCCCCCT-HHH-HHHHHHHHHHTSCHHHHHHHHTHHHHTCCSCBSCCSC---GGGBCCCEECCSSSCEECCTTEEE---
T ss_pred             CceEeeCc-HHH-HHHHHHhhcccchhhhhhhHHHhhccCCccccccCCh---hhhhhccccccCCccccccccccc---
Confidence            99999986 687 9999999999999999999999999999999774322   2344444433211100 0000000   


Q ss_pred             CCCCCCCcchhhhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          453 RLPSSFQPDKISQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       453 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                      ..+.....     .....+  ...........|+||++||++||+||+++|++++.+.++
T Consensus       234 ~~~~~~~~-----~~~~~~--~~~~~~~~~~~g~gGl~sta~Dlarf~~~l~~~~~~~~~  286 (377)
T d1ci9a_         234 PLPEGHGA-----AVRFAP--SRVFEPGAYPSGGAGMYGSADDVLRALEAIRANPGFLPE  286 (377)
T ss_dssp             ECCTTSCS-----EEEECG--GGGGCTTSCCCTTTCCEECHHHHHHHHHHHHHCSSSSCH
T ss_pred             cccccccc-----ccccCc--cccccccccccCCccccccHHHHHHHHHHhhhccCCCcH
Confidence            00000000     000000  001111223457899999999999999999998877655

>d1yqsa1 e.3.1.1 (A:3-347) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., R61 [TaxId: 1931]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-ala carboxypeptidase/transpeptidase
species: Streptomyces sp., R61 [TaxId: 1931]

Probab=100.00  E-value=3.2e-50  Score=433.08  Aligned_cols=326  Identities=21%  Similarity=0.308  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccC
Q 004807          231 EAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEE  310 (729)
Q Consensus       231 ~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd  310 (729)
                      .+.++++++..+++ ++||++++|+++|+ ++..+||+++.+.++|++++|+|+|||+||+|||+++++|+|+|+|+|||
T Consensus         6 ~~~l~~~~~~~~~~-~~pG~~v~v~~~g~-~~~~~~G~~d~~~~~~~t~~t~f~i~SvsK~~ta~~i~~lv~~G~l~ldd   83 (345)
T d1yqsa1           6 DTGLQAVLHTALSQ-GAPGAMVRVDDNGT-IHQLSEGVADRATGRAITTTDRFRVGSVTKSFSAVVLLQLVDEGKLDLDA   83 (345)
T ss_dssp             HHHHHHHHHHHHHT-TCSEEEEEEEETTE-EEEEEEEBSCTTTCCBCCTTCBEECGGGHHHHHHHHHHHHHHTTSCCTTS
T ss_pred             hHHHHHHHHHHHHC-CCCeEEEEEEECCE-EEEEeEEEEeccCCCCCCCCCEEEchhhhHHHHHHHHHHHHHhhcccccc
Confidence            34567777776664 69999999999887 57899999999999999999999999999999999999999999999999


Q ss_pred             chhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCccc-------CCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCc
Q 004807          311 NIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSS-------ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLS  383 (729)
Q Consensus       311 ~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~  383 (729)
                      ||++|||++..  .++|||+|||+||||++++......       .......+.+++++.+...++.++||+.|.|||.+
T Consensus        84 ~v~~~lp~~~~--~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~  161 (345)
T d1yqsa1          84 SVNTYLPGLLP--DDRITVRQVMSHRSGLYDYTNDMFAQTVPGFESVRNKVFSYQDLITLSLKHGVTNAPGAAYSYSNTN  161 (345)
T ss_dssp             BHHHHSTTCSS--CTTCBHHHHHTTCSCCCCTHHHHTSSHHHHHHHHTTCCCCHHHHHHHHHTSCCSSSTTSCCCCCHHH
T ss_pred             chhhcccccCC--cceEEeeeeccccCCCCcccccchhhccccccccccccCCHHHHHHHHHhcCccCCCCcccccCCcc
Confidence            99999999975  4689999999999999876432211       11123467889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchh
Q 004807          384 FGWLCGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKI  463 (729)
Q Consensus       384 ~~~lLg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  463 (729)
                      |. |||.|||+++|++|++|++++||+||||++|.|...........+..+..........                   
T Consensus       162 ~~-lLg~iie~vtg~~~~~~~~e~i~~PLgm~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  221 (345)
T d1yqsa1         162 FV-VAGMLIEKLTGHSVATEYQNRIFTPLNLTDTFYVHPDTVIPGTHANGYLTPDEAGGAL-------------------  221 (345)
T ss_dssp             HH-HHHHHHHHHHSSCHHHHHHHHTTTTTTCTTCBCCTTCCCCCSSBCCCEECCSSTTCCC-------------------
T ss_pred             cc-ccchhhhhccccchHHHHHHHHhhccCCcceeccCchhhhcccccccccccccccccc-------------------
Confidence            98 9999999999999999999999999999999875443333333333332211100000                   


Q ss_pred             hhhhccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccchh
Q 004807          464 SQLAAITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTK  543 (729)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~  543 (729)
                               ............|+||++||++||+||+++++++..++++                               
T Consensus       222 ---------~~~~~~~~~~~~~aGgl~st~~Dla~~~~~l~~~~~l~~~-------------------------------  261 (345)
T d1yqsa1         222 ---------VDSTEQTVSWAQSAGAVISSTQDLDTFFSALMSGQLMSAA-------------------------------  261 (345)
T ss_dssp             ---------EECCCCCCTTTGGGTCCEECHHHHHHHHHHHHTTCSSCHH-------------------------------
T ss_pred             ---------cccccccccccCCCcccccCHHHHHHHHHHhhcCCCCCHH-------------------------------
Confidence                     0000001122358999999999999999999988766554                               


Q ss_pred             HHHHHHhhccCCCCcCCcccccccCCCccccccCCcchhhhhcccccCCCCCCCcCCCCCCCCCCcccccccCCCccccc
Q 004807          544 KELLAALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDA  623 (729)
Q Consensus       544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  623 (729)
                        ++++|.+                            |..                                        
T Consensus       262 --~~~~~~~----------------------------~~~----------------------------------------  271 (345)
T d1yqsa1         262 --QLAQMQQ----------------------------WTT----------------------------------------  271 (345)
T ss_dssp             --HHHHHTC----------------------------CEE----------------------------------------
T ss_pred             --HHHHHhh----------------------------ccc----------------------------------------
Confidence              3444400                            000                                        


Q ss_pred             ccccCCCCCCCCCCCccccceecccCCCCCcceeccCC-CCCc--eeeeecCCCeEEEEEeccCCCCcchHHHHHHHHHh
Q 004807          624 FLGVGDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSG-MGGS--TGFCDVNNRFAIAVTLNKMSFGATTGRIIHFVCSE  700 (729)
Q Consensus       624 ~~~~~~~~~~~~~~~~~GlG~~~~~~~~~~~~~~gh~G-~~G~--~~~~~Pe~~~~vvvl~N~~~~~~~~~~~~~~v~~~  700 (729)
                                .....+||+||++.... .+..+++|+| .+|+  +++++|+++++||+++|.....+..+.+.+.+.++
T Consensus       272 ----------~~~~~~yG~G~~~~~~~-~g~~~~~H~G~~~G~~s~~~~~p~~~~~iv~l~N~~~~~~~~~~~~~~l~~~  340 (345)
T d1yqsa1         272 ----------VNSTQGYGLGLRRRDLS-CGISVYGHTGTVQGYYTYAFASKDGKRSVTALANTSNNVNVLNTMARTLESA  340 (345)
T ss_dssp             ----------EETTEEECSSCEEEECT-TSCEEEEEEEEETTEEEEEEECTTSSEEEEEEESEESCHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCceeEEEEeeccC-CCceEEEecCccCCceEEEEEEEcCCEEEEEEEeCCCChHHHHHHHHHHHHH
Confidence                      00124799999986533 3455799999 6664  45999999999999999977666778888888887


Q ss_pred             h
Q 004807          701 L  701 (729)
Q Consensus       701 l  701 (729)
                      +
T Consensus       341 ~  341 (345)
T d1yqsa1         341 F  341 (345)
T ss_dssp             H
T ss_pred             h
Confidence            7

>d1onha_ e.3.1.1 (A:) AMPC beta-Lactamase, class C {Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: AMPC beta-Lactamase, class C
species: Enterobacter cloacae, P99, cephalosporinase [TaxId: 550]

Probab=100.00  E-value=1.3e-50  Score=439.33  Aligned_cols=244  Identities=19%  Similarity=0.273  Sum_probs=208.5

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK  307 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~  307 (729)
                      +++.+.+++.+++++++.++||++|+|+++|++++. .||+++.+.++|+++||+|+|||+||+|||+++++|+|+|+|+
T Consensus         5 ~~l~~~v~~~i~~~~~~~~~pG~~v~V~~~g~~~~~-~~G~~~~~~~~p~~~dT~f~iaSitK~~ta~~i~~L~e~G~l~   83 (363)
T d1onha_           5 KQLAEVVANTVTPLMKAQSVPGMAVAVIYQGKPHYY-TFGKADIAANKPVTPQTLFELGSISKTFTGVLGGDAIARGEIS   83 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEEEEEETTEEEEE-EEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEEEEECCEEEEE-eEEecccCCCCCCCCCCEEEeeehHHHHHHHHHHHHHhcCcce
Confidence            567778999999999999999999999999999985 7899999999999999999999999999999999999999999


Q ss_pred             ccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHH
Q 004807          308 LEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWL  387 (729)
Q Consensus       308 ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~l  387 (729)
                      |||||++|+|+|...+++.|||||||+||||+..+.      .+....+.+++++.+.+.++.++||+.|.|||.+|. |
T Consensus        84 lddpv~~ylp~~~~~~~~~ITi~~LL~HtSGl~~~~------~~~~~~~~~~~~~~~~~~~~~~~PG~~~~Ysn~~~~-l  156 (363)
T d1onha_          84 LDDPVTRYWPQLTGKQWQGIRMLDLATYTAGGLPLQ------VPDEVTDNASLLRFYQNWQPQWKPGTTRLYANASIG-L  156 (363)
T ss_dssp             TTSBGGGTCTTCCCGGGTTCBHHHHHHTCSSCCCSS------CCTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHH-H
T ss_pred             eeeccchhhhhcccccccccchhhHhhccccCcccc------CccccCCHHHHHHHHHHhhhhcCCceeeecccccee-h
Confidence            999999999999887788999999999999976532      222357889999999999999999999999999998 9


Q ss_pred             HHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhh
Q 004807          388 CGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA  467 (729)
Q Consensus       388 Lg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  467 (729)
                      ||.|||+++|++|++|++++||+||||++|++. .+.....+.+..|..........   .     .+            
T Consensus       157 lg~iie~~tg~~~~~~~~e~i~~PLgm~~t~~~-~~~~~~~~~a~~~~~~~~~~~~~---~-----~~------------  215 (363)
T d1onha_         157 FGALAVKPSGMPYEQAMTTRVLKPLKLDHTWIN-VPKAEEAHYAWGYRDGKAVRAVR---V-----SP------------  215 (363)
T ss_dssp             HHHHHTGGGTSCHHHHHHHHTTTTTTCTTEESS-CCGGGGGGBCCEEETTEEECCCC---C-----CS------------
T ss_pred             hhhhhhhhcCCChhhhhHHHHHhhcCccccccc-CCcccccceeeeeecCCccccee---e-----ec------------
Confidence            999999999999999999999999999999664 55555666666664322111000   0     00            


Q ss_pred             ccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                .  ....|+||++||++||+||++++++++.+.++
T Consensus       216 ----------~--~~~~~aggl~st~~Dla~~~~~~l~~~~~~~~  248 (363)
T d1onha_         216 ----------G--MLDAQAYGVKTNVQDMANWVMANMAPENVADA  248 (363)
T ss_dssp             ----------S--TTHHHHHCCEECHHHHHHHHHHHHCGGGCCSH
T ss_pred             ----------c--cccccccceeeCHHHHHHHHHHhhcCCCCCch
Confidence                      0  01137899999999999999999999988776

>d2hdsa1 e.3.1.1 (A:4-361) AMPC beta-Lactamase, class C {Escherichia coli, cephalosporinase [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: AMPC beta-Lactamase, class C
species: Escherichia coli, cephalosporinase [TaxId: 562]

Probab=100.00  E-value=1e-50  Score=439.11  Aligned_cols=241  Identities=21%  Similarity=0.280  Sum_probs=207.0

Q ss_pred             hHHHHHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCC
Q 004807          228 SDVEAKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLK  307 (729)
Q Consensus       228 ~~~~~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~  307 (729)
                      +.+.+.|++.++++++++++||++|+|+++|+++++ +||+++.+++.|+++||+|+|||+||+|||+++++|+|+|+|+
T Consensus         3 ~~~~~~v~~~i~~~~~~~~ipG~~v~v~~~g~~~~~-~~G~~~~~~~~~~~~dt~f~iaS~tK~~ta~~i~~lv~~G~l~   81 (358)
T d2hdsa1           3 QQINDIVHRTITPLIEQQKIPGMAVAVIYQGKPYYF-TWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIK   81 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEE-EEEEEETTTTEECCTTCBEECGGGHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCeEEEEEEECCEEEEE-eEEeeccccCCCCCCCCEEeccchHHHHHHHHHHHHHhcCCcc
Confidence            567788999999999999999999999999999985 6999999999999999999999999999999999999999999


Q ss_pred             ccCchhhhccCCccCCCCCCcHHHHhcCCCCCCCCccCcccCCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHH
Q 004807          308 LEENIANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVDLSSENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWL  387 (729)
Q Consensus       308 ldd~v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~l  387 (729)
                      |||||++|+|++..++++.|||||||+||||+..+..      +....+.+++++.+...++.++||+.|.|||.+|. |
T Consensus        82 ld~~v~~ylp~~~~~~~~~iTir~LLshtsG~~~~~~------~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~-l  154 (358)
T d2hdsa1          82 LSDPTTKYWPELTAKQWNGITLLHLATYTAGGLPLQV------PDEVKSSSDLLRFYQNWQPAWAPGTQRLYANSSIG-L  154 (358)
T ss_dssp             TTSBHHHHCTTCCCGGGTTCBHHHHHHTCSSCCCSSC------CTTCCSHHHHHHHHHHCCCSSCTTSEECCCHHHHH-H
T ss_pred             cchhhhhhcccccccccchhhhhhhcccCcCCCchhh------cccccccHHHHHHHhhCccccCCCceeEecccccc-c
Confidence            9999999999998777899999999999999876432      23357889999999999999999999999999999 9


Q ss_pred             HHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhh
Q 004807          388 CGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA  467 (729)
Q Consensus       388 Lg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  467 (729)
                      ||.|||++||++|+++++++||+||||++|++. .++....+.+..+........           .+            
T Consensus       155 lg~iie~~tg~~~~~~~~~~i~~PLgm~~T~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~------------  210 (358)
T d2hdsa1         155 FGALAVKPSGLSFEQAMQTRVFQPLKLNHTWIN-VPPAEEKNYAWGYREGKAVHV-----------SP------------  210 (358)
T ss_dssp             HHHHHTGGGTSCHHHHHHHHTTTTTTCTTEESS-CCGGGGGGBCCEEETTEEECC-----------CC------------
T ss_pred             cchhhhcccCCChhhhhhhHHHhhcCcccccCC-CChhHhcccccccccCccccc-----------cc------------
Confidence            999999999999999999999999999999664 444444444444432211100           00            


Q ss_pred             ccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                                  .....|+||++||++||+||++++++++.++++
T Consensus       211 ------------~~~~~~aggl~st~~Dla~f~~~~l~~~~~~~~  243 (358)
T d2hdsa1         211 ------------GALDAEAYGVKSTIEDMARWVQSNLKPLDINEK  243 (358)
T ss_dssp             ------------CTTHHHHTCCEECHHHHHHHHHHHHCGGGCSSH
T ss_pred             ------------ccccCCCcceecCHHHHHHHHHHHhCCCCCChH
Confidence                        011147899999999999999999999998876

>d1ei5a3 e.3.1.1 (A:3-335) D-aminopeptidase, N-terminal domain {Ochrobactrum anthropi [TaxId: 529]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-aminopeptidase, N-terminal domain
species: Ochrobactrum anthropi [TaxId: 529]

Probab=100.00  E-value=1.6e-49  Score=425.47  Aligned_cols=242  Identities=19%  Similarity=0.205  Sum_probs=194.2

Q ss_pred             HHHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCc
Q 004807          232 AKLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEEN  311 (729)
Q Consensus       232 ~~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~  311 (729)
                      +++++++++++++..+||++|+|+++|+++++++||+++.+.+.|+++||+|+|||+||+|||+++++|+++|+| ||||
T Consensus         5 ~~l~~~~~~~~~~~~~PG~sv~V~~~g~~v~~~~~G~~d~~~~~~~~~dt~f~i~SvsK~~ta~~v~~lv~~G~l-ldd~   83 (333)
T d1ei5a3           5 SALEAFVRHIPQNYKGPGGVVAVVKDGEVVLQHAWGFADLRTRTPMTLDTRMPICSVSKQFTCAVLLDAVGEPEL-LDDA   83 (333)
T ss_dssp             HHHHHHHHTHHHHSCSSEEEEEEEETTEEEEEEEEEEEETTTTEECCTTCCEECGGGHHHHHHHHHHHHTCSGGG-GHHH
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEEECCEEEEEEeEeeeccccCCCCCCCCEEeeeehHHHHHHHHHHHHHhcCCC-ccch
Confidence            467888888888899999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             hhhhccCCccCCCCCCcHHHHhcCCCCCCCCccC--cccCCCcCCCCHHHHHHHHHhc-CCCCCCCCceecccCcHHHHH
Q 004807          312 IANIWPEFKSNGKDLIKVHHVLNHTSGLHNVSVD--LSSENPLLICDWDECLNRIALS-APETEPGQEQLYHYLSFGWLC  388 (729)
Q Consensus       312 v~~ylP~~~~~~~~~iTir~LLtHtSGl~~~~~~--~~~~~~~~~~~~~~~~~~l~~~-~~~~~PG~~~~Ysn~~~~~lL  388 (729)
                      |.+|+|+++   .++|||+|||+|||||+++...  .....+.......+....+... ++.++||+.|.|||.+|. ||
T Consensus        84 v~~~lp~~~---~~~iTi~~LL~htSGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~Ysn~~~~-lL  159 (333)
T d1ei5a3          84 LEAYLDKFE---DERPAVRDLCNNQSGLRDYWALSVLCGADPEGVFLPAQAQSLLRRLKTTHFEPGSHYSYCNGNFR-IL  159 (333)
T ss_dssp             HHHHTTTCC---SCCCCHHHHHTTCSCCCCHHHHHHHTTCCTTCCBCHHHHHHHHHTCCCCSSCTTSSCCCCHHHHH-HH
T ss_pred             hhhhccccc---hhhhhhccccccCCCCcccccccccccccccccchhhhHHHHHHhcCCCcCCCCceeecccchhH-HH
Confidence            999999997   4689999999999999975321  1123333445666777776665 457899999999999998 99


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhhc
Q 004807          389 GGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLAA  468 (729)
Q Consensus       389 g~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  468 (729)
                      |.|||+++|++|+++++++||+||||++|.|..  +....+.+..|.........                         
T Consensus       160 g~iie~~tg~~~~~~~~~~i~~PLgm~~t~~~~--~~~~~~~~~~~~~~~~~~~~-------------------------  212 (333)
T d1ei5a3         160 ADLIEAHTGRTLVDILSERIFAPAGMKRAELIS--DTALFDECTGYEGDTVRGFL-------------------------  212 (333)
T ss_dssp             HHHHHHHHTSCHHHHHHHHTHHHHTCTTCEECC--BGGGCCSSCCEEEETTTEEE-------------------------
T ss_pred             HHhhhhhcCCccchhhhhhhcCccCccceeccC--chhhcccccccccccccccc-------------------------
Confidence            999999999999999999999999999997732  22222222222111110000                         


Q ss_pred             cccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCC
Q 004807          469 ITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPP  512 (729)
Q Consensus       469 ~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~  512 (729)
                             ...+...+.|+||++||++||+||++++.++..++..
T Consensus       213 -------~~~~~~~~~gaggl~sta~Dla~~~~~l~~~~~~~~~  249 (333)
T d1ei5a3         213 -------PATNRIQWMGDAGICASLNDMIAWEQFIDATRDDESG  249 (333)
T ss_dssp             -------ECCCCBBCCSSSCEEECHHHHHHHHHHHHHTTTCTTS
T ss_pred             -------cccccccccccCceeecHHHHHHHHHHhhcCCCCcHH
Confidence                   0011123468999999999999999999887666554

>d2dcfa1 e.3.1.1 (A:5-392) 6-aminohexanoate-dimer hydrolase NylC {Flavobacterium sp. [TaxId: 239]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: 6-aminohexanoate-dimer hydrolase NylC
species: Flavobacterium sp. [TaxId: 239]

Probab=100.00  E-value=4.9e-41  Score=365.96  Aligned_cols=298  Identities=16%  Similarity=0.170  Sum_probs=215.9

Q ss_pred             HhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchhhhccCC
Q 004807          240 ELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIANIWPEF  319 (729)
Q Consensus       240 ~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~ylP~~  319 (729)
                      +++++..+.|  ++|+++|++|++++++        .++++|+|.++|+||+||++++++|+++|+|++|+||.+|+|+|
T Consensus        71 ~~l~~~~t~a--~lV~~~G~iv~E~y~~--------~~~~~t~~~~~SvtKs~ta~li~~lve~G~l~ldd~v~~ylPe~  140 (388)
T d2dcfa1          71 QRLEQTYTDA--FLVLRGTEVVAEYYRA--------GFAPDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQPVTEYVPEL  140 (388)
T ss_dssp             HHHHHTTEEE--EEEEETTEEEEEEECT--------TCCTTCCEECTTHHHHHHHHHHHHHHHTTSCCTTSBGGGTCGGG
T ss_pred             HHHHhcCCcE--EEEEECCEEEEEEecC--------CCCcccchhHHHHHHHHHHHHHHHHHhcCcccccCcccccchhh
Confidence            3333344455  4788999999998875        46999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcHHHHhcCCCCCCCCccCccc------------CCCcCCCCHHHHHHHHHhcCCCCCCCCceecccCcHHHH
Q 004807          320 KSNGKDLIKVHHVLNHTSGLHNVSVDLSS------------ENPLLICDWDECLNRIALSAPETEPGQEQLYHYLSFGWL  387 (729)
Q Consensus       320 ~~~~~~~iTir~LLtHtSGl~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~PG~~~~Ysn~~~~~l  387 (729)
                      ....+++|||+|||+||||++........            ..+.......++...+...+.. +||.+|.|+|.++. |
T Consensus       141 ~~~~~~~iTi~~LL~mtsGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~pg~~f~Y~~~~~~-l  218 (388)
T d2dcfa1         141 AGSVYDGPSVLQVLDMQISIDYNEDYVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTLRGD-GSTGEFQYCSANTD-V  218 (388)
T ss_dssp             TTSTTSSCBHHHHHTTCBCCSCCCCSSCTTSHHHHHHHHHTSSCCCTTCCSSHHHHHHTCCCC-SCBSSCCCCHHHHH-H
T ss_pred             cccccchhhHHHhhhcccCCccccccccccchhhhhhhhhhcccccccchHHHHHHHhccCcC-CCCCEEEEecCCHH-H
Confidence            98888999999999999999864321110            0111122334455565555544 55667999999998 9


Q ss_pred             HHHHHHHHhCCCHHHHHHHHhhhccCCCCccCCCCCCCccccccceeccCcccccccccCCCCCCCCCCCCCcchhhhhh
Q 004807          388 CGGIIERASGKKFQEILEEGIIQPLSIDGELYIGIPPGVESRLASLTIDTDDLNKVSGINNRPDLRLPSSFQPDKISQLA  467 (729)
Q Consensus       388 Lg~iie~vtG~~~~~~l~e~If~PLGm~~T~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  467 (729)
                      ||.|||++||++|.+|++|+||+||||+++.+.....                                           
T Consensus       219 Lg~iie~~tG~~~~~~~~e~i~~PlGm~~~~~~~~~~-------------------------------------------  255 (388)
T d2dcfa1         219 LAWIVERVTGLRYVEALSTYLWAKLDADRDATITVDT-------------------------------------------  255 (388)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHTGGGTTCSSCCEECBCT-------------------------------------------
T ss_pred             HHHHHHHhcCccchhhhhhhccCcccccccccccccc-------------------------------------------
Confidence            9999999999999999999999999999875532100                                           


Q ss_pred             ccccccccchhcccccCCCcceecCHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccchhHHHH
Q 004807          468 AITPAVFNMLNIRRAIIPAANGHCSARALARYYAALADGGVVPPPHSRLSKPPLGSHPHIPKFPSHETSKKQKGTKKELL  547 (729)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~agGl~sTa~Dlak~~~~ll~gg~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~  547 (729)
                                  .....++||+++|++||+||+++++++|.++++|.                           .+++.+
T Consensus       256 ------------~g~~~~~ggl~~tarDlarfg~l~l~~G~~~g~qi---------------------------ls~~~i  296 (388)
T d2dcfa1         256 ------------TGFGFANGGVSCTARDLARVGRMMLDGGVAPGGRV---------------------------VSEDWV  296 (388)
T ss_dssp             ------------TCCBCTTTCEEECHHHHHHHHHHHHTTTEETTEEC---------------------------SCHHHH
T ss_pred             ------------cCcccccchhhhcccchhHHHHHHHhCCccCCccc---------------------------chHHHH
Confidence                        01125789999999999999999999999988731                           133344


Q ss_pred             HHhhccCCCCcCCcccccccCCCccccccCCcchhhhhcccccCCCCCCCcCCCCCCCCCCcccccccCCCccccccccc
Q 004807          548 AALKNKTNNSEHGHKYTKDLEGGSHIRTASGDTYARLINIETSSSNTSTTDSISNTDEPQSSNVRKIFNNPRIHDAFLGV  627 (729)
Q Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  627 (729)
                      +++.+......+                 ...+|..                                            
T Consensus       297 ~~~~~~~~~~~~-----------------~~~~~~~--------------------------------------------  315 (388)
T d2dcfa1         297 RRVLAGGSHEAM-----------------TDKGFTN--------------------------------------------  315 (388)
T ss_dssp             HHHHHCCCTTTC-----------------CCHHHHH--------------------------------------------
T ss_pred             HHHhcCCCcccc-----------------ccccccc--------------------------------------------
Confidence            444222111100                 0001110                                            


Q ss_pred             CCCCCCCCCCCccccceecccCCCCCcceeccCCCCCceeeeecCCCeEEEEEeccCCCCcc-----hHHHHHHHHHhh
Q 004807          628 GDYGDLALPNGRFGLGFKRYNTRDGSYIGFGHSGMGGSTGFCDVNNRFAIAVTLNKMSFGAT-----TGRIIHFVCSEL  701 (729)
Q Consensus       628 ~~~~~~~~~~~~~GlG~~~~~~~~~~~~~~gh~G~~G~~~~~~Pe~~~~vvvl~N~~~~~~~-----~~~~~~~v~~~l  701 (729)
                            ..++.+||++|+...   .+...|.|.|.+|+++|++|+++++||+++|...+...     ...|++.|.+.|
T Consensus       316 ------~~~~~~Yg~~ww~~~---~~~~~~~~~G~~GQ~i~vdP~~~lvIV~ls~~~~~~~~~~~~~~~~i~~~i~~~l  385 (388)
T d2dcfa1         316 ------TFPDGSYTRQWWCTG---NERGNVSGIGIHGQNLWLDPLTDSVIVKLSSWPDPDTEHWHRLQNGILLDVSRAL  385 (388)
T ss_dssp             ------HCTTCEEETTEEECC---CTTCCEEEEETTTEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHHHHHT
T ss_pred             ------CCCCCCCCcceeecC---CCCCcEEEECCCCcEEEEEecCCEEEEEeCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence                  113458999998854   23346889999999999999999999999997543221     344555555554

>d1tvfa2 e.3.1.1 (A:15-315) Pencillin binding protein 4 (PbpD), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Pencillin binding protein 4 (PbpD), N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.21  E-value=8.3e-06  Score=82.53  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=44.3

Q ss_pred             eEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          249 GIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       249 G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..+|.+.+-|+++|++             +.+..+.+||+||.+|+.+++..+++|+++||++|.
T Consensus        36 ~a~iv~~~TG~VLy~k-------------Na~~~~~pAS~tKlMTa~v~le~i~~g~~~l~~~v~   87 (301)
T d1tvfa2          36 TSAVNVSQTGQLLYQY-------------NIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVT   87 (301)
T ss_dssp             SEEEEEETTSBEEEEE-------------STTCCBCCGGGHHHHHHHHHHHHHHTTSSCTTCEEE
T ss_pred             ceEEEEcCCCcEehee-------------CcCCCcCchHHHHHHHHHHHHHHHhcCCCCcccCeE
Confidence            3445556889998863             667889999999999999999999999999999874

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.19  E-value=5.4e-07  Score=85.49  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           17 VNKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        17 ~d~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ....+++..++++ +..++..|++|+|+||+||++++   +.++|+|||+...++....
T Consensus       103 ~~~~~i~~ql~~~-l~~lH~~giiHrDiKP~NILv~~---~~~~liDFG~a~~~~~~~~  157 (191)
T d1zara2         103 ENPDEVLDMILEE-VAKFYHRGIVHGDLSQYNVLVSE---EGIWIIDFPQSVEVGEEGW  157 (191)
T ss_dssp             SCHHHHHHHHHHH-HHHHHHTTEECSCCSTTSEEEET---TEEEECCCTTCEETTSTTH
T ss_pred             HHHHHHHHHHHHH-HHHHhhCCEEEccCChhheeeeC---CCEEEEECCCcccCCCCCc
Confidence            4567788888876 56679999999999999999985   4699999999888874433

>d1iysa_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli, TOHO-1 [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Escherichia coli, TOHO-1 [TaxId: 562]

Probab=98.05  E-value=0.00014  Score=71.74  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIAN  314 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~  314 (729)
                      +.|..|..||++|.++++++++.+++|++++|++|.-
T Consensus        34 n~d~~~~~AS~~Kl~~~~~~l~~v~~g~l~~~~~v~~   70 (261)
T d1iysa_          34 RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEI   70 (261)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHHTSCTTSTTCEEEC
T ss_pred             CCCCcCccHHHHHHHHHHHHHHhhhcCCCCcCceEEE
Confidence            5688899999999999999999999999999998863

>d1m40a_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli, TEM-1 [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Escherichia coli, TEM-1 [TaxId: 562]

Probab=98.03  E-value=0.00019  Score=70.95  Aligned_cols=67  Identities=25%  Similarity=0.410  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      +..++|++..+++-.   ..|  +.|.  ..|++++.  +           ++|..|..||++|.+++++++..+++|++
T Consensus         3 ~~~~~i~~~~~~~~~---~vg--v~v~dl~tG~~l~s--~-----------n~d~~~p~AS~~Kl~~~~~~l~~v~~g~~   64 (263)
T d1m40a_           3 ETLVKVKDAEDQLGA---RVG--YIELDLNSGKILES--F-----------RPEERFPMMSTFKVLLCGAVLSRVDAGQE   64 (263)
T ss_dssp             HHHHHHHHHHHHHTS---EEE--EEEEETTTCCEEEE--E-----------STTSCEECGGGHHHHHHHHHHHHHHTTSC
T ss_pred             cHHHHHHHHHHhcCC---eEE--EEEEECCCCcEeeE--E-----------CCCCcccchHHHHHHHHHHHHHhhhcCCc
Confidence            444566666665422   223  3333  45787753  2           67788999999999999999999999999


Q ss_pred             CccCchh
Q 004807          307 KLEENIA  313 (729)
Q Consensus       307 ~ldd~v~  313 (729)
                      ++|++|.
T Consensus        65 ~~~~~v~   71 (263)
T d1m40a_          65 QLGRRIH   71 (263)
T ss_dssp             CTTCEEC
T ss_pred             CCCceEE
Confidence            9999983

>d1g6aa_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas aeruginosa, PSE-4 carbenicillinase [TaxId: 287]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Pseudomonas aeruginosa, PSE-4 carbenicillinase [TaxId: 287]

Probab=97.95  E-value=0.00013  Score=72.26  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=33.8

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.+..|..||+.|.++++++++.+++|++++++++.
T Consensus        37 n~~~~~p~AS~~Kl~~a~~~l~~~~~g~l~~~~~i~   72 (266)
T d1g6aa_          37 NGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVE   72 (266)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHHHTTSCCTTCEEE
T ss_pred             CCCCeecchHHHHHHHHHHHHHHHHcCCCCccceEE
Confidence            667889999999999999999999999999999985

>d2cc1a1 e.3.1.1 (A:27-293) beta-Lactamase, class A {Mycobacterium fortuitum [TaxId: 1766]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Mycobacterium fortuitum [TaxId: 1766]

Probab=97.93  E-value=0.00011  Score=72.69  Aligned_cols=36  Identities=25%  Similarity=0.543  Sum_probs=34.0

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ++|..|..||++|.++++++++.+++|++++|++|.
T Consensus        34 n~d~~~~~AS~~Kl~~a~~~l~~~~~g~~~~~~~v~   69 (262)
T d2cc1a1          34 RPDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVF   69 (262)
T ss_dssp             STTSCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEE
T ss_pred             CCCCcCccHHHHHHHHHHHHHHHhhccCcccCceEE
Confidence            678899999999999999999999999999999985

>d1o7ea_ e.3.1.1 (A:) beta-Lactamase, class A {Stenotrophomonas maltophilia, L2 [TaxId: 40324]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Stenotrophomonas maltophilia, L2 [TaxId: 40324]

Probab=97.90  E-value=8e-05  Score=74.01  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +.|+.|.++|++|.+++++++..+++|+++||++|.
T Consensus        38 ~~d~~~p~AS~~Kl~~~~~~l~~~~~g~~~ld~~v~   73 (267)
T d1o7ea_          38 RQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVP   73 (267)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHHTTCTTTTTCEEE
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhhcCCCCCCcEEE
Confidence            678889999999999999999999999999999885

>d1e25a_ e.3.1.1 (A:) beta-Lactamase, class A {Pseudomonas aeruginosa, PER-1 [TaxId: 287]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Pseudomonas aeruginosa, PER-1 [TaxId: 287]

Probab=97.86  E-value=5.1e-05  Score=75.60  Aligned_cols=37  Identities=35%  Similarity=0.395  Sum_probs=34.8

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchhh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIAN  314 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~~  314 (729)
                      ++++.|..||++|.+|+++++..+++|+++||++|.-
T Consensus        35 n~~~~~p~AS~~Kl~~~~~~l~~i~~g~l~l~~~v~~   71 (278)
T d1e25a_          35 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIV   71 (278)
T ss_dssp             STTCCEECGGGHHHHHHHHHHHHHHTTSSCTTCEEEE
T ss_pred             CCCCeeccHHHHHHHHHHHHHHHHHcCCCCchhhccc
Confidence            6788999999999999999999999999999999964

>d1n9ba_ e.3.1.1 (A:) beta-Lactamase, class A {Klebsiella pneumoniae, SHV-2 [TaxId: 573]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Klebsiella pneumoniae, SHV-2 [TaxId: 573]

Probab=97.78  E-value=0.00017  Score=71.26  Aligned_cols=65  Identities=23%  Similarity=0.311  Sum_probs=47.7

Q ss_pred             HHHHHHHHhccCCCCceEEEEEEecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCch
Q 004807          233 KLRDFLVELGNDGKILGIQVCAYKDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENI  312 (729)
Q Consensus       233 ~l~~~l~~~~~~~~~~G~sv~v~~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v  312 (729)
                      .|.+...++   .+-.|+.+.=...|++++.  +           ++|+.|..||++|.+++++++..+++|++++|++|
T Consensus         7 ~~~~~~~~~---~g~~g~~v~D~~tG~~l~~--~-----------n~d~~~~~AS~~Kl~~a~~~l~~v~~g~~~~~~~v   70 (265)
T d1n9ba_           7 QIKLSESQL---SGRVGMIEMDLASGRTLTA--W-----------RADERFPMMSTFKVVLCGAVLARVDAGDEQLERKI   70 (265)
T ss_dssp             HHHHHHHHH---TSEEEEEEEETTTCCEEEE--E-----------STTSCEECGGGHHHHHHHHHHHHHHTTSCCTTCEE
T ss_pred             HHHHHHHhc---CCeEEEEEEECCCCcEeee--E-----------CCCCccccHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence            455555543   2222433222267777653  2           77899999999999999999999999999999998


Q ss_pred             h
Q 004807          313 A  313 (729)
Q Consensus       313 ~  313 (729)
                      .
T Consensus        71 ~   71 (265)
T d1n9ba_          71 H   71 (265)
T ss_dssp             C
T ss_pred             E
Confidence            6

>d1bsga_ e.3.1.1 (A:) beta-Lactamase, class A {Streptomyces albus G [TaxId: 1962]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Streptomyces albus G [TaxId: 1962]

Probab=97.75  E-value=0.00028  Score=69.65  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ++|..|..||++|.++++++++.+++|+++|++++.
T Consensus        34 n~d~~~~~AS~~Kl~~~~~~l~~~~~g~~~~~~~~~   69 (266)
T d1bsga_          34 RADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRIL   69 (266)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHTCSSSTTTTCEEC
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhhcCCCccceeeE
Confidence            678899999999999999999999999999999873

>d1xp4a2 e.3.1.1 (A:25-293) D,D-carboxypeptidase DacA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D,D-carboxypeptidase DacA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.72  E-value=0.00021  Score=70.92  Aligned_cols=45  Identities=20%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|++++++             +++....+||+||.+|++.++..+++|+|+++++|.
T Consensus        14 ~tG~vL~~k-------------n~~~~~~pAS~TKlmTa~v~le~l~~g~l~~~~~v~   58 (269)
T d1xp4a2          14 NTGKILYEK-------------DATQPVEIASITKLITVYLVYEALENGSITLSTPVD   58 (269)
T ss_dssp             TTTEEEEEE-------------SCSSCEECGGGGHHHHHHHHHHHHHHTSSCTTCEEE
T ss_pred             CCCCEeeee-------------CcCCCcCCHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence            458888763             567889999999999999999999999999999876

>d3beca2 e.3.1.1 (A:4-262) Penicillin-binding protein 5, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 5, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=8.6e-05  Score=73.34  Aligned_cols=52  Identities=19%  Similarity=0.196  Sum_probs=42.2

Q ss_pred             eEEEEEE--ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          249 GIQVCAY--KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       249 G~sv~v~--~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +-+..|+  ..|++++++             +.+....+||+||.+|+.+++..+++|++++++.|.
T Consensus        14 a~saiv~D~~tg~vL~~k-------------n~~~~~~~ASlTKlMTa~v~l~~~~~~~l~~~~~v~   67 (259)
T d3beca2          14 AESYILIDYNSGKVLAEQ-------------NADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVT   67 (259)
T ss_dssp             EEEEEEEETTTCCEEEEE-------------STTCCBCCGGGHHHHHHHHHHHHHHTTSCCTTCEEE
T ss_pred             ceEEEEEECCCCcEeeeE-------------CcCCCcCChHHHHHHHHHHHHHHHHhCCCCccccee
Confidence            4444455  347888753             667889999999999999999999999999998874

>d1es5a_ e.3.1.1 (A:) D-ala carboxypeptidase/transpeptidase {Streptomyces sp., K15 [TaxId: 1931]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: D-ala carboxypeptidase/transpeptidase
species: Streptomyces sp., K15 [TaxId: 1931]

Probab=97.68  E-value=0.00014  Score=71.72  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             ecceeEEEeeeeecCCCCCCCCCCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          256 KDGEVIIDTSAGMLGRYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       256 ~~g~~v~~~~~G~~~~~~~~p~~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      ..|+++|++             +++..+.+||+||.+|+.++   +++|+++||++|.
T Consensus        15 ~tG~vL~~k-------------na~~~~~~AS~tKlmTa~v~---l~~~~~~ld~~vt   56 (260)
T d1es5a_          15 GTGTTLYTK-------------AADTRRSTGSTTKIMTAKVV---LAQSNLNLDAKVT   56 (260)
T ss_dssp             TTCCEEEEE-------------STTCCBCCGGGGHHHHHHHH---HTCTTCCTTCEEE
T ss_pred             CCCcEeeeE-------------CcCCCcCCHHHHHHHHHHHH---HHcCCCCCCceEE
Confidence            458888763             67788999999999999886   4789999999875

>d1buea_ e.3.1.1 (A:) beta-Lactamase, class A {Enterobacter cloacae, NMC-A carbapenemase [TaxId: 550]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Enterobacter cloacae, NMC-A carbapenemase [TaxId: 550]

Probab=97.60  E-value=0.00048  Score=67.80  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCchh
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENIA  313 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v~  313 (729)
                      +++..|..||++|.++++++++.+++|+++|+++|.
T Consensus        35 n~~~~~p~AS~~Kl~~a~~~l~~i~~g~~~~~~~v~   70 (265)
T d1buea_          35 RANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVN   70 (265)
T ss_dssp             STTSCEECGGGGHHHHHHHHHHHHHTTSSCTTCEEC
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhhcCCCCcccceE
Confidence            567889999999999999999999999999999985

>d1djaa_ e.3.1.1 (A:) beta-Lactamase, class A {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.58  E-value=0.00029  Score=69.22  Aligned_cols=29  Identities=28%  Similarity=0.302  Sum_probs=26.3

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCC
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKL  306 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l  306 (729)
                      +.|..|..||++|.+|++++++.+++|+|
T Consensus        31 n~d~~~~~AS~~Kl~~a~~~l~~~~~~~L   59 (258)
T d1djaa_          31 NSDKRFAYASTSHAINSAILLEQVPYNKL   59 (258)
T ss_dssp             STTSCEECGGGHHHHHHHHHHTSSCGGGT
T ss_pred             CCCCcCccHHHHHHHHHHHHHHhccccCc
Confidence            67888999999999999999999888875

>d1i2sa_ e.3.1.1 (A:) beta-Lactamase, class A {Bacillus licheniformis [TaxId: 1402]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: beta-Lactamase, class A
species: Bacillus licheniformis [TaxId: 1402]

Probab=97.30  E-value=0.0029  Score=61.61  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=27.1

Q ss_pred             CCCCccccccchHHHHHHHHHHHHHCCCCCccCch
Q 004807          278 QPDSLFPVFSVTKGITAGMLHWLVDNGKLKLEENI  312 (729)
Q Consensus       278 ~~~t~f~i~SitK~~ta~~v~~lve~G~l~ldd~v  312 (729)
                      +.+..|..||++|.++++++++.+++|+  ||++|
T Consensus        30 n~d~~~~~AS~~Kl~~~~~~l~~~~~g~--Ld~~v   62 (255)
T d1i2sa_          30 RPDERFAFASTIKALTVGVLLQQKSIED--LNQRI   62 (255)
T ss_dssp             STTCCEECGGGHHHHHHHHHHHHSCTGG--GGCEE
T ss_pred             CCCCcCccHHHHHHHHHHHHHHHcccCC--Cccce
Confidence            5688899999999999999998777775  45543

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=96.64  E-value=0.00048  Score=71.04  Aligned_cols=50  Identities=18%  Similarity=0.345  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..+++++ .-+...|++|.|.+|.||+++.+.+|++.|.|||+...+.+
T Consensus       132 i~~qi~~aL-~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~  181 (352)
T d1koba_         132 YMRQACEGL-KHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP  181 (352)
T ss_dssp             HHHHHHHHH-HHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT
T ss_pred             HHHHHHHHH-HHHHHCCeeecccccccccccccCCCeEEEeecccceecCC
Confidence            455555544 34579999999999999999854468999999999988764

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0011  Score=66.26  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |++.|.|||+...++..
T Consensus       121 i~~qi~~a-L~yLH~~~iiHrDiKp~NILl~~~--~~vkl~DFG~a~~~~~~  169 (293)
T d1yhwa1         121 VCRECLQA-LEFLHSNQVIHRDIKSDNILLGMD--GSVKLTDFGFCAQITPE  169 (293)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--CCEEECCCTTCEECCST
T ss_pred             HHHHHHHH-HHHHHHCCCcccCCcHHHeEECCC--CcEeeccchhheeeccc
Confidence            34444433 334568999999999999999865  89999999999887543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=96.24  E-value=0.0013  Score=67.72  Aligned_cols=53  Identities=19%  Similarity=0.397  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++.+ +.-+...|++|.|..|.||++..+.+|++.|.|||+...++..
T Consensus       127 ~~i~~qi~~a-L~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~  179 (350)
T d1koaa2         127 VEYMRQVCKG-LCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK  179 (350)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTT
T ss_pred             HHHHHHHHHH-HHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccc
Confidence            3455555555 3446799999999999999998655689999999999888653

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0024  Score=63.56  Aligned_cols=52  Identities=25%  Similarity=0.335  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++++.-. +...|++|+|.+|.||+++.+  |++.|.|||+...+....
T Consensus       113 ~~i~~qi~~gL~y-lH~~~ivHrDiKp~NIll~~~--~~~Kl~DFG~a~~~~~~~  164 (288)
T d2jfla1         113 QVVCKQTLDALNY-LHDNKIIHRDLKAGNILFTLD--GDIKLADFGVSAKNTRTI  164 (288)
T ss_dssp             HHHHHHHHHHHHH-HHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECHHHH
T ss_pred             HHHHHHHHHHHHH-HHHCCEEEeecChhheeECCC--CCEEEEechhhhccCCCc
Confidence            4455555555433 578999999999999999865  899999999998776543

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0025  Score=62.58  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++.- -+...|++|+|.+|.||+++.+  |++.|.|||+...++.
T Consensus       110 ~i~~qi~~al~-~lH~~~ivHrDiKp~Nill~~~--~~~kl~DFG~a~~~~~  158 (263)
T d2j4za1         110 TYITELANALS-YCHSKRVIHRDIKPENLLLGSA--GELKIADFGWSVHAPS  158 (263)
T ss_dssp             HHHHHHHHHHH-HHHHTTCCCCCCCGGGEEECTT--SCEEECCCCSCSCCCC
T ss_pred             HHHHHHHHHHH-HHHHCCeeeeeeccccceecCC--CCEeecccceeeecCC
Confidence            34555555543 3578999999999999999865  8999999999987764

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.02  E-value=0.0021  Score=62.48  Aligned_cols=37  Identities=19%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      ..+.|+|.||+||++.++  +.++||||+.++.=++..=
T Consensus       183 ~~l~HgD~~~~Nil~~~~--~~~~lIDwe~a~~g~~~~D  219 (263)
T d1j7la_         183 LVFSHGDLGDSNIFVKDG--KVSGFIDLGRSGRADKWYD  219 (263)
T ss_dssp             EEEECSCCCTTSEEEETT--EEEEECCCTTCEEEEHHHH
T ss_pred             cEEEEeeccCcceeecCC--ceEEEeechhcccCCHHHH
Confidence            348899999999999753  3346999999998665543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0031  Score=63.13  Aligned_cols=52  Identities=19%  Similarity=0.247  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++++ +.-+...|++|+|.+|.||+++.+  +.+-|.|||+.+.+....
T Consensus       131 ~~i~~qia~g-l~yLH~~~iiHrDlKp~NILl~~~--~~~Kl~DFGla~~~~~~~  182 (299)
T d1jpaa_         131 VGMLRGIAAG-MKYLADMNYVHRDLAARNILVNSN--LVCKVSDFGLSRFLEDDT  182 (299)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--CCEEECCC----------
T ss_pred             HHHHHHHHHH-HHHHhhCCCccCccccceEEECCC--CcEEECCcccceEccCCC
Confidence            3455555554 445578999999999999999865  899999999998776543

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0026  Score=65.27  Aligned_cols=48  Identities=19%  Similarity=0.302  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+++.+  |.+.|.|||+.+.+..
T Consensus       146 i~~qi~~a-L~yLH~~~iiHRDIKP~NILl~~~--g~ikL~DFG~a~~~~~  193 (350)
T d1rdqe_         146 YAAQIVLT-FEYLHSLDLIYRDLKPENLLIDQQ--GYIQVTDFGFAKRVKG  193 (350)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--SCEEECCCTTCEECSS
T ss_pred             HHHHHHHH-HHHHHhCCEecCcCCHHHcccCCC--CCEEeeeceeeeeccc
Confidence            44444433 344579999999999999999865  8999999999998764

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.003  Score=62.94  Aligned_cols=54  Identities=31%  Similarity=0.409  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMKQ   76 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r~   76 (729)
                      ..++..++.+. .-+...|++|.|.+|.||+++.+  |.+.|.|||+.+.++.....
T Consensus       111 ~~~~~qi~~al-~ylH~~~iiHrDiKp~NIll~~~--~~vkl~DFG~a~~~~~~~~~  164 (288)
T d1uu3a_         111 RFYTAEIVSAL-EYLHGKGIIHRDLKPENILLNED--MHIQITDFGTAKVLSPESKQ  164 (288)
T ss_dssp             HHHHHHHHHHH-HHHHHTTEECSCCSGGGEEECTT--SCEEECCCTTCEECC-----
T ss_pred             HHHHHHHHHHH-HhhccccEEcCcCCccccccCCC--ceEEecccccceecccCCcc
Confidence            33455555554 34678999999999999999865  89999999999998765433

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0026  Score=64.40  Aligned_cols=49  Identities=16%  Similarity=0.277  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++.+ ++-+...|++|+|.+|.||+++.++.++|.+.|||+...+..
T Consensus       108 ~~qi~~a-l~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~  156 (321)
T d1tkia_         108 VHQVCEA-LQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP  156 (321)
T ss_dssp             HHHHHHH-HHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT
T ss_pred             HHHHHHH-HHHHHHcCCCcccccccceeecCCCceEEEEcccchhhcccc
Confidence            3444443 444579999999999999999876556899999999887654

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0034  Score=62.06  Aligned_cols=49  Identities=16%  Similarity=0.260  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..+++.. .-+...|++|+|.+|.||+++.+  +.+-|.|||+...++..
T Consensus       109 i~~qi~~gl-~yLH~~~ivHrDlKp~NiLl~~~--~~~Kl~DFGla~~~~~~  157 (276)
T d1uwha_         109 IARQTAQGM-DYLHAKSIIHRDLKSNNIFLHED--LTVKIGDFGLATVKSRW  157 (276)
T ss_dssp             HHHHHHHHH-HHHHHTTCCCSCCCGGGEEEETT--SSEEECCCCCSCC----
T ss_pred             HHHHHHHHH-HHHhcCCEeccccCHHHEEEcCC--CCEEEccccceeecccc
Confidence            444444433 34568999999999999999865  89999999999887654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.0029  Score=63.00  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +.-+...|++|+|.+|.||+++.+  +.+.|.|||+.+.++..
T Consensus       119 ~i~~qi~~g-L~yLH~~~iiHrDlKp~NILl~~~--~~~Kl~DFG~a~~~~~~  168 (287)
T d1opja_         119 YMATQISSA-MEYLEKKNFIHRDLAARNCLVGEN--HLVKVADFGLSRLMTGD  168 (287)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCSGGGEEECGG--GCEEECCCCCTTTCCSS
T ss_pred             HHHHHHHHH-HHHHHHCCcccCccccCeEEECCC--CcEEEccccceeecCCC
Confidence            344455544 455578999999999999999865  89999999998876543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0027  Score=64.25  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..|++|+|.+|.||++..+  |++.|.|||+.+.+.
T Consensus       123 ~~~IiHRDiKP~NILl~~~--~~vkl~DFGla~~~~  156 (322)
T d1s9ja_         123 KHKIMHRDVKPSNILVNSR--GEIKLCDFGVSGQLI  156 (322)
T ss_dssp             HHCCCCSCCSGGGEEECTT--CCEEECCCCCCHHHH
T ss_pred             hCCEEccccCHHHeeECCC--CCEEEeeCCCccccC
Confidence            3699999999999999865  899999999986653

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.69  E-value=0.0039  Score=61.64  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=34.3

Q ss_pred             HHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           32 HQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        32 ~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +-+...|++|.|.+|.||++..+  +.+.|.|||.+..+++.
T Consensus       124 ~~lH~~~ivHrDlkp~Nill~~~--~~~kl~DFG~a~~~~~~  163 (277)
T d1phka_         124 CALHKLNIVHRDLKPENILLDDD--MNIKLTDFGFSCQLDPG  163 (277)
T ss_dssp             HHHHHTTEECSCCSGGGEEECTT--CCEEECCCTTCEECCTT
T ss_pred             HHHHHcCCcccccccceEEEcCC--CCeEEccchheeEccCC
Confidence            34468999999999999999764  89999999999988653

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0034  Score=61.82  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +.-+...|++|.|.+|.||+++.+ ++++.|.|||+....+.
T Consensus       114 ~~~~qi~~a-l~~lH~~~iiHrDiKp~NIll~~~-~~~vkl~DFG~a~~~~~  163 (273)
T d1xwsa_         114 SFFWQVLEA-VRHCHNCGVLHRDIKDENILIDLN-RGELKLIDFGSGALLKD  163 (273)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECSCCSGGGEEEETT-TTEEEECCCTTCEECCS
T ss_pred             HHHHHHHHH-HHHHHHCCCccccCcccceEEecC-CCeEEECccccceeccc
Confidence            344555544 445679999999999999999865 47899999999876653

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0032  Score=62.07  Aligned_cols=50  Identities=20%  Similarity=0.314  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++.+.- -+...|++|.|.+|.||+++.+  |++.|.|||+...++.
T Consensus       106 ~~i~~qi~~al~-ylH~~~IiHrDiKp~NILl~~~--~~~KL~DFG~a~~~~~  155 (271)
T d1nvra_         106 QRFFHQLMAGVV-YLHGIGITHRDIKPENLLLDER--DNLKISDFGLATVFRY  155 (271)
T ss_dssp             HHHHHHHHHHHH-HHHHTTEECSCCCGGGEEECTT--CCEEECCCTTCEECEE
T ss_pred             HHHHHHHHHHHH-HHHHcCCccCcccHHHEEECCC--CCEEEccchhheeecc
Confidence            345555555543 3578999999999999999865  8999999999987653

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=95.57  E-value=0.003  Score=63.92  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|+|.+|.||+|..+ ++.+.+.|||+...+.+
T Consensus       134 i~~qil~a-L~~LH~~gIvHrDiKp~NILi~~~-~~~vkl~DFG~a~~~~~  182 (328)
T d3bqca1         134 YMYEILKA-LDYCHSMGIMHRDVKPHNVMIDHE-HRKLRLIDWGLAEFYHP  182 (328)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEEETT-TTEEEECCGGGCEECCT
T ss_pred             HHHHHHHH-HHHHhhcccccccccccceEEcCC-CCeeeecccccceeccC
Confidence            34444433 344568999999999999999865 35688999999987764

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0036  Score=63.14  Aligned_cols=48  Identities=23%  Similarity=0.346  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|.|.+|.||+++.+  |++.|.|||+.+.+..
T Consensus       109 ~~~qi~~a-l~~lH~~~iiHrDiKp~NILl~~~--g~vkL~DFG~a~~~~~  156 (316)
T d1fota_         109 YAAEVCLA-LEYLHSKDIIYRDLKPENILLDKN--GHIKITDFGFAKYVPD  156 (316)
T ss_dssp             HHHHHHHH-HHHHHTTTEECCCCCGGGEEECTT--SCEEECCCSSCEECSS
T ss_pred             HHHHHHHh-hhhhccCcEEccccCchheeEcCC--CCEEEecCccceEecc
Confidence            34444443 344578999999999999999864  8999999999988754

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0049  Score=61.45  Aligned_cols=51  Identities=22%  Similarity=0.285  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ...++..++.+ ++-+...|++|.|.+|.||+++.+  +++.|.|||+...+..
T Consensus       102 ~~~~~~qil~a-L~~lH~~~iiHrDiKp~NIli~~~--~~~KL~DFG~a~~~~~  152 (299)
T d1ua2a_         102 IKAYMLMTLQG-LEYLHQHWILHRDLKPNNLLLDEN--GVLKLADFGLAKSFGS  152 (299)
T ss_dssp             HHHHHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--CCEEECCCGGGSTTTS
T ss_pred             HHHHHHHHHHH-HHHhhccceecccCCcceEEecCC--CccccccCccccccCC
Confidence            34556666654 445678999999999999999865  8999999999987664

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0061  Score=60.27  Aligned_cols=50  Identities=20%  Similarity=0.278  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++..+++. ++-+...|++|+|.+|.||+|+.+  +.+-|-|||+.+.+....
T Consensus       115 i~~~i~~g-l~~lH~~~iiHrDlKp~NILl~~~--~~~Kl~DFGla~~~~~~~  164 (283)
T d1mqba_         115 MLRGIAAG-MKYLANMNYVHRDLAARNILVNSN--LVCKVSDFGLSRVLEDDP  164 (283)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--CCEEECCCCC--------
T ss_pred             HHHHHHHh-hhhccccccccCccccceEEECCC--CeEEEcccchhhcccCCC
Confidence            44444433 555678999999999999999865  899999999998776543

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.42  E-value=0.0042  Score=61.90  Aligned_cols=51  Identities=20%  Similarity=0.360  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecC---CCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD---PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d---~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.. ++.+...|++|+|.+|.||++..+   .++++.++|||+.+.+.+
T Consensus       105 ~i~~q~~~~-l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~  158 (293)
T d1csna_         105 MAAKQMLAR-VQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRD  158 (293)
T ss_dssp             HHHHHHHHH-HHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBC
T ss_pred             HHHHHHHHH-HHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEccc
Confidence            344444443 667789999999999999999752   247899999999987654

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0057  Score=62.24  Aligned_cols=48  Identities=27%  Similarity=0.257  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ ++-+...|++|+|..|.||+++.+  |++-|.|||+.+.+..
T Consensus       110 ~~~qil~a-l~ylH~~~iiHRDlKP~NILl~~~--g~vkl~DFG~a~~~~~  157 (337)
T d1o6la_         110 YGAEIVSA-LEYLHSRDVVYRDIKLENLMLDKD--GHIKITDFGLCKEGIS  157 (337)
T ss_dssp             HHHHHHHH-HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCCTTCBCSCC
T ss_pred             HHHHHhhh-hhhhhhcCccccccCHHHeEecCC--CCEEEeeccccccccc
Confidence            44445544 344689999999999999999865  8999999999987644

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0043  Score=61.58  Aligned_cols=49  Identities=22%  Similarity=0.411  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ +.-+...|++|+|..|.||+++.+  +.+.|.|||+.+.+..
T Consensus       113 ~i~~qi~~g-L~ylH~~~iiHrDlKp~Nill~~~--~~~Kl~DFGla~~~~~  161 (285)
T d1u59a_         113 ELLHQVSMG-MKYLEEKNFVHRDLAARNVLLVNR--HYAKISDFGLSKALGA  161 (285)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEEEET--TEEEECCCTTCEECTT
T ss_pred             HHHHHHHHH-HHHHHhCCeecCcCchhheeeccC--Cceeeccchhhhcccc
Confidence            344444443 334578999999999999999875  8999999999987753

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.36  E-value=0.0046  Score=63.69  Aligned_cols=48  Identities=21%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++.+ +.-+...|++|.|.+|.||+++.+  |.+.|.|||+...++.
T Consensus       112 ~~~qi~~a-L~ylH~~~iiHrDlKP~NILl~~~--g~iKl~DFGla~~~~~  159 (364)
T d1omwa3         112 YAAEIILG-LEHMHNRFVVYRDLKPANILLDEH--GHVRISDLGLACDFSK  159 (364)
T ss_dssp             HHHHHHHH-HHHHHHTTEECCCCSGGGEEECSS--SCEEECCCTTCEECSS
T ss_pred             HHHHHHHH-HHHHHHCCccceeeccceeEEcCC--CcEEEeeeceeeecCC
Confidence            44444444 344678999999999999999865  8999999999987764

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0086  Score=60.95  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ++-+...|++|+|.+|.||++..+  |.+-|.|||+...+....
T Consensus       122 l~yLH~~~iiHRDIKp~NILl~~~--~~~kl~DfG~a~~~~~~~  163 (345)
T d1pmea_         122 LKYIHSANVLHRDLKPSNLLLNTT--CDLKICDFGLARVADPDH  163 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEECCGGG
T ss_pred             HHHHHHCCCcCCCCCcceEEECCC--CCEEEcccCceeeccCCC
Confidence            445568999999999999999764  899999999998776643

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=95.27  E-value=0.0058  Score=58.91  Aligned_cols=36  Identities=17%  Similarity=0.125  Sum_probs=28.6

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCHHHH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSMK   75 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~r   75 (729)
                      .++|+|+|||||++..+  +.+++|||+.++.=++..=
T Consensus       176 ~liHgD~~~~Nvl~~~~--~~~~iID~~~~~~g~~~~D  211 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENG--RFSGFIDCGRLGVADRYQD  211 (255)
T ss_dssp             EEECSSCCGGGEEEETT--EEEEECCCTTCEEEETHHH
T ss_pred             eEEeCCCCCcceEEeCC--ceEEEEEchhcccCCHHHH
Confidence            48999999999999853  3357999999988665543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0058  Score=60.07  Aligned_cols=50  Identities=22%  Similarity=0.331  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++ +.-+...|++|+|.+|.||+++.+  +.+-|.|||+.+.++.
T Consensus       112 ~~i~~qi~~g-l~~lH~~~ivHrDiKp~NIll~~~--~~~Kl~DFGla~~~~~  161 (272)
T d1qpca_         112 LDMAAQIAEG-MAFIEERNYIHRDLRAANILVSDT--LSCKIADFGLARLIED  161 (272)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECSCCSGGGEEECTT--SCEEECCCTTCEECSS
T ss_pred             HHHHHHHHHH-HHHHHhCCcccCccchhheeeecc--cceeeccccceEEccC
Confidence            3445555543 445678999999999999999864  8999999999987754

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0062  Score=60.67  Aligned_cols=48  Identities=17%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      .++..++++.- -+...|++|+|..|.||+++.+  +.+-|.|||+.+.+.
T Consensus       138 ~~~~qi~~gl~-ylH~~~ivHrDlKp~NILl~~~--~~~Kl~DFGla~~~~  185 (299)
T d1ywna1         138 CYSFQVAKGME-FLASRKCIHRDLAARNILLSEK--NVVKICDFGLARDIY  185 (299)
T ss_dssp             HHHHHHHHHHH-HHHHTTCCCSCCCGGGEEECGG--GCEEECC------CC
T ss_pred             HHHHHHHHHHH-HHHhCCCcCCcCCccceeECCC--CcEEEccCcchhhcc
Confidence            34445555443 3678999999999999999865  899999999986554

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.12  E-value=0.007  Score=60.76  Aligned_cols=49  Identities=20%  Similarity=0.261  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. .-+...|++|.|.+|.||+++.+  |.+.|.|||+...+..
T Consensus       119 ~i~~qi~~aL-~yLH~~~iiHrDiKp~NILl~~~--~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_         119 AVTHGALQGL-AYLHSHNMIHRDVKAGNILLSEP--GLVKLGDFGSASIMAP  167 (309)
T ss_dssp             HHHHHHHHHH-HHHHHTTCBCCCCSGGGEEEETT--TEEEECCCTTCBSSSS
T ss_pred             HHHHHHHHHH-HHHHhCCEeccCCCcceEEECCC--CCEEEeecccccccCC
Confidence            3455555443 34578999999999999999865  8999999999987654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.12  E-value=0.0076  Score=60.42  Aligned_cols=52  Identities=23%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEec-CCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSK-DPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~-d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++.+. .-+...|++|.|.+|.||++.. +.+|++.|.|||+.+.+++.
T Consensus       111 ~~~~qi~~al-~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~  163 (307)
T d1a06a_         111 RLIFQVLDAV-KYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPG  163 (307)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC---------
T ss_pred             HHHHHHHHHH-HhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCC
Confidence            3444444443 3456899999999999999964 23589999999999876554

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0025  Score=64.57  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ..|++|+|+||||++++.   + .++|||+-|+.=+
T Consensus       191 p~~liHgDlh~~NvL~~~---~-~~~IDFdd~~~g~  222 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRD---G-PMFVDLDDARNGP  222 (325)
T ss_dssp             CCEECCSSCSGGGEEESS---S-EEECCCTTCCEEC
T ss_pred             CceeecCCCCcccEEEeC---C-ceEEechhcccCc
Confidence            468899999999999963   3 5689999998644

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.06  E-value=0.007  Score=60.20  Aligned_cols=50  Identities=26%  Similarity=0.472  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecC-CCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKD-PPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d-~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ ++.+...|++|+|.+|.||++... .+..+.+.|||+.+.+..
T Consensus       108 ~~~qi~~~-l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~  158 (299)
T d1ckia_         108 LADQMISR-IEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  158 (299)
T ss_dssp             HHHHHHHH-HHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBC
T ss_pred             HHHHHHHH-HHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccc
Confidence            34444444 556789999999999999998642 235789999999987653

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.01  Score=57.71  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++++ +.-+...|++|+|.+|.||+++.+  +.+.|.|||+...+.+.
T Consensus       103 ~~i~~qi~~g-l~~LH~~~iiH~dlk~~Nill~~~--~~~kl~DfG~a~~~~~~  153 (258)
T d1k2pa_         103 LEMCKDVCEA-MEYLESKQFLHRDLAARNCLVNDQ--GVVKVSDFGLSRYVLDD  153 (258)
T ss_dssp             HHHHHHHHHH-HHHHHHTTBCCSCCSGGGEEECTT--CCEEECCCSSCCBCSSS
T ss_pred             HHHHHHHHHH-HHHHhhcCcccccccceeEEEcCC--CcEEECcchhheeccCC
Confidence            3445555554 344578999999999999999864  78999999998776544

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0087  Score=58.72  Aligned_cols=51  Identities=25%  Similarity=0.283  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++++ +.-+...|++|+|..|.||+++.+  +.+.+.|||+.+.++..
T Consensus       111 ~~~~~qi~~g-l~ylH~~~iiHrDlKp~NIll~~~--~~~Kl~DfG~a~~~~~~  161 (273)
T d1mp8a_         111 ILYAYQLSTA-LAYLESKRFVHRDIAARNVLVSSN--DCVKLGDFGLSRYMEDS  161 (273)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCCCSCCSGGGEEEEET--TEEEECC----------
T ss_pred             HHHHHHHHHH-hhhhcccCeeccccchhheeecCC--CcEEEccchhheeccCC
Confidence            3345555555 445689999999999999999875  79999999999887644

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0071  Score=61.75  Aligned_cols=50  Identities=28%  Similarity=0.333  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. +-+...|++|+|.+|.||++..+ +..+.|.|||+...+..
T Consensus       126 ~i~~qil~aL-~yLH~~~IiHrDiKp~NILl~~~-~~~~kl~DFG~a~~~~~  175 (350)
T d1q5ka_         126 LYMYQLFRSL-AYIHSFGICHRDIKPQNLLLDPD-TAVLKLCDFGSAKQLVR  175 (350)
T ss_dssp             HHHHHHHHHH-HHHHTTTEECCCCCGGGEEECTT-TCCEEECCCTTCEECCT
T ss_pred             HHHHHHHHHH-HHHHhcCCcccCCCcceEEEecC-CCceeEecccchhhccC
Confidence            4455555443 34568999999999999999865 24678999999987754

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0084  Score=60.99  Aligned_cols=49  Identities=31%  Similarity=0.522  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. .-+...|++|+|.+|.||+++.+  +.+.+.|||+...++.
T Consensus       125 ~~~~qi~~aL-~~LH~~~IiHrDiKp~NIL~~~~--~~~kl~Dfg~a~~~~~  173 (346)
T d1cm8a_         125 FLVYQMLKGL-RYIHAAGIIHRDLKPGNLAVNED--CELKILDFGLARQADS  173 (346)
T ss_dssp             HHHHHHHHHH-HHHHHTTEECCCCCGGGEEECTT--CCEEECCCTTCEECCS
T ss_pred             HHHHHHHHHH-HHHHhCCCcccccCcchhhcccc--cccccccccceeccCC
Confidence            3444444444 44679999999999999999865  8999999999988764

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0056  Score=60.99  Aligned_cols=46  Identities=20%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccc
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKK   69 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~   69 (729)
                      .++..++.+. +-+...|++|+|.+|.||+++.+  +.+.+.|||+...
T Consensus       106 ~~~~qil~~L-~yLH~~~IiHrDiKpeNIl~~~~--~~~kl~DFG~a~~  151 (298)
T d1gz8a_         106 SYLFQLLQGL-AFCHSHRVLHRDLKPQNLLINTE--GAIKLADFGLARA  151 (298)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCSCCCGGGEEECTT--SCEEECSTTHHHH
T ss_pred             HHHHHHHHHH-HHhhcCCEEccccCchheeeccc--CcceeccCCccee
Confidence            3444455443 45679999999999999999765  7999999997643

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0083  Score=60.59  Aligned_cols=48  Identities=19%  Similarity=0.306  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++..++++ +.-+...|++|+|.+|.||+++.+  +.+.|.|||+.+.+..
T Consensus       169 i~~qi~~g-l~yLH~~~IiHRDlKp~Nill~~~--~~~Kl~DFGla~~~~~  216 (325)
T d1rjba_         169 FAYQVAKG-MEFLEFKSCVHRDLAARNVLVTHG--KVVKICDFGLARDIMS  216 (325)
T ss_dssp             HHHHHHHH-HHHHHHTTEEETTCSGGGEEEETT--TEEEECCCGGGSCGGG
T ss_pred             HHHHHHHH-HHHHHhCCeeeccCchhccccccC--CeEEEeeccccccccC
Confidence            44455443 344468999999999999999865  8999999999876643

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0099  Score=59.63  Aligned_cols=51  Identities=14%  Similarity=0.262  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      -.++..++++... +...|++|+|.+|.||+++.+  +.+.|-|||+.+.+...
T Consensus       133 ~~i~~qia~gL~~-lH~~~iiHrDLK~~NILl~~~--~~~kL~DFG~~~~~~~~  183 (311)
T d1r0pa_         133 IGFGLQVAKGMKF-LASKKFVHRDLAARNCMLDEK--FTVKVADFGLARDMYDK  183 (311)
T ss_dssp             HHHHHHHHHHHHH-HHHTTCCCSCCSGGGEEECTT--CCEEECSSGGGCCTTTT
T ss_pred             HHHHHHHHHhhhh-hcccCcccCCccHHhEeECCC--CCEEEecccchhhcccc
Confidence            4577777777544 789999999999999999764  78999999999887654

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.011  Score=58.42  Aligned_cols=49  Identities=16%  Similarity=0.317  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++ ++-+...|++|.|.+|.||++..+  +.+.+.|||+...++.
T Consensus       105 ~~~~q~~~a-L~~lH~~~IvHrDiKP~NIli~~~--~~~kl~DFG~a~~~~~  153 (292)
T d1unla_         105 SFLFQLLKG-LGFCHSRNVLHRDLKPQNLLINRN--GELKLANFGLARAFGI  153 (292)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEECTT--CCEEECCCTTCEECCS
T ss_pred             HHHHHHHHH-HHHhhcCCEeeecccCcccccccC--CceeeeecchhhcccC
Confidence            344444443 455668899999999999999865  7899999999988764

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=94.71  E-value=0.0068  Score=59.88  Aligned_cols=49  Identities=16%  Similarity=0.311  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+ ++-+...|++|.|.+|.||++..+  +.+-+.|||+...+..
T Consensus       104 ~i~~qi~~~-L~~LH~~~IvHrDiKp~NIll~~~--~~~kl~DfG~a~~~~~  152 (286)
T d1ob3a_         104 SFLLQLLNG-IAYCHDRRVLHRDLKPQNLLINRE--GELKIADFGLARAFGI  152 (286)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEECTT--SCEEECCTTHHHHHCC
T ss_pred             HHHHHHHHH-HHHhccCcEEecCCCCceeeEcCC--CCEEecccccceeccc
Confidence            345555543 566679999999999999999875  8999999998776543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.011  Score=57.96  Aligned_cols=48  Identities=13%  Similarity=0.142  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHcC--ccccCCCCCCeEEecCCCCCeEEEecccccccC
Q 004807           22 VVEEITRAYAHQIYVDG--FFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLS   71 (729)
Q Consensus        22 la~~l~~~~~~qif~~G--ffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~   71 (729)
                      ++..++.+.- -+...|  ++|.|.+|.||+++.+ ++.+-|.|||+.+...
T Consensus       117 ~~~qi~~gl~-yLH~~~~~IiHrDiKp~NILl~~~-~~~~Kl~DFGla~~~~  166 (270)
T d1t4ha_         117 WCRQILKGLQ-FLHTRTPPIIHRDLKCDNIFITGP-TGSVKIGDLGLATLKR  166 (270)
T ss_dssp             HHHHHHHHHH-HHHTSSSCCCCSCCCGGGEEESST-TSCEEECCTTGGGGCC
T ss_pred             HHHHHHHHHH-HHHHCCCCEEeCCcChhhceeeCC-CCCEEEeecCcceecc
Confidence            3444444332 235567  9999999999999743 5899999999986543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0064  Score=59.74  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=22.9

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +++|.|.+|.||+++.+  |.+.|.|||+.+.++..
T Consensus       134 ~IiHrDiKp~NIll~~~--~~vkl~DFG~a~~~~~~  167 (269)
T d2java1         134 TVLHRDLKPANVFLDGK--QNVKLGDFGLARILNHD  167 (269)
T ss_dssp             ------CCGGGEEECTT--SCEEECCHHHHHHC---
T ss_pred             CEEeCcCchhhcCcCCC--CcEEEeeccceeecccC
Confidence            39999999999999865  89999999998877654

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.0099  Score=58.01  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      ..++..++++. .-+...|.+|+|.+|.||+++.+  +.+-|.|||+.+.+....
T Consensus       104 ~~i~~qia~gl-~~lH~~~iiHrDlKp~Nill~~~--~~~Kl~DFGla~~~~~~~  155 (263)
T d1sm2a_         104 LGMCLDVCEGM-AYLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQ  155 (263)
T ss_dssp             HHHHHHHHHHH-HHHHHTTCCCTTCSGGGEEECGG--GCEEECSCC---------
T ss_pred             HHHHHHHHHHH-HhhhccceeecccchhheeecCC--CCeEecccchheeccCCC
Confidence            34666666664 44789999999999999999875  899999999987765543

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.56  E-value=0.013  Score=57.61  Aligned_cols=51  Identities=22%  Similarity=0.448  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..++.+ +..+...|++|+|.+|.||+++.+  +.+.+.|||....+....
T Consensus       115 ~i~~qi~~a-l~~lH~~~iiHrDiKP~NIll~~~--~~~~l~d~~~~~~~~~~~  165 (277)
T d1o6ya_         115 EVIADACQA-LNFSHQNGIIHRDVKPANIMISAT--NAVKVMDFGIARAIADSG  165 (277)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEEETT--SCEEECCCTTCEECC---
T ss_pred             HHHHHHHHH-HHHHHhCCccCccccCcccccCcc--ccceeehhhhhhhhcccc
Confidence            455555554 456789999999999999999875  789999999998776543

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.011  Score=58.95  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=29.8

Q ss_pred             cCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           37 DGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        37 ~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .|++|+|.+|.||+|+.+  |++.|-|||+...+..
T Consensus       127 ~~IvHrDlKp~NILl~~~--~~~Kl~DFGl~~~~~~  160 (303)
T d1vjya_         127 PAIAHRDLKSKNILVKKN--GTCCIADLGLAVRHDS  160 (303)
T ss_dssp             CEEECSCCCGGGEEECTT--SCEEECCCTTCEEEET
T ss_pred             CCeeccccCccceEEcCC--CCeEEEecCccccccC
Confidence            489999999999999765  8999999999887744

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.013  Score=57.67  Aligned_cols=49  Identities=24%  Similarity=0.417  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++++.- -+...|++|+|..|.||+++.+  |.+.+.|||+.+.+..
T Consensus       111 ~i~~qi~~gl~-ylH~~~iiHrDlKp~Nill~~~--~~~kl~DFGla~~~~~  159 (277)
T d1xbba_         111 ELVHQVSMGMK-YLEESNFVHRDLAARNVLLVTQ--HYAKISDFGLSKALRA  159 (277)
T ss_dssp             HHHHHHHHHHH-HHHHTTEECSCCSGGGEEEEET--TEEEECCCTTCEECCT
T ss_pred             HHHHHHHHHHh-hHHhCCcccCCCcchhhccccc--Ccccccchhhhhhccc
Confidence            34555555443 3578999999999999999875  8999999999987653

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.39  E-value=0.0037  Score=62.75  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=27.9

Q ss_pred             HcCccccCCCCCCeEEecCCCCCeEEEeccccccc
Q 004807           36 VDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKL   70 (729)
Q Consensus        36 ~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l   70 (729)
                      ..|++|+|+|++|+++..+  +..++|||+.+..=
T Consensus       182 ~~giIHgDl~~dNvl~~~~--~v~gvIDF~~~~~~  214 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGD--ELSGLIDFYFACND  214 (316)
T ss_dssp             CEEEECSCCCGGGEEEETT--EEEEECCCTTCEEE
T ss_pred             ccccccCCcchhhhhcccc--cceeEecccccccc
Confidence            6899999999999999854  44599999999753

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.16  E-value=0.015  Score=57.43  Aligned_cols=51  Identities=18%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      .++..++++ +.-+...|++|+|..|.||+++.+  +.+.|.|||+.+.+.+..
T Consensus       117 ~i~~~i~~g-l~~LH~~~ivH~DlKp~NIll~~~--~~~kl~DfGla~~~~~~~  167 (285)
T d1fmka3         117 DMAAQIASG-MAYVERMNYVHRDLRAANILVGEN--LVCKVADFGLARLIEDNE  167 (285)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCSGGGEEECGG--GCEEECCCCTTC------
T ss_pred             HHHHHHHHH-HHHHhhhheecccccceEEEECCC--CcEEEcccchhhhccCCC
Confidence            344444443 445578999999999999999865  899999999998776543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.014  Score=58.68  Aligned_cols=49  Identities=29%  Similarity=0.394  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ++..++.+ ++.+...|++|.|..|.||+++.+  |.+.|.|||+.+.+...
T Consensus       134 ~~~Qi~~a-l~~lH~~~ivHrDiKp~Nill~~~--~~vkL~DFG~a~~~~~~  182 (322)
T d1vzoa_         134 YVGEIVLA-LEHLHKLGIIYRDIKLENILLDSN--GHVVLTDFGLSKEFVAD  182 (322)
T ss_dssp             HHHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--SCEEESCSSEEEECCGG
T ss_pred             HHHHHHHH-HHHhhcCCEEeccCCccceeecCC--CCEEEeeccchhhhccc
Confidence            44444443 344778999999999999999865  89999999999888754

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.016  Score=58.06  Aligned_cols=51  Identities=24%  Similarity=0.375  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++++ ++-+...|++|+|.+|-||++..+  +.+.+-|||++..++..
T Consensus       120 ~~i~~qil~~-l~~lH~~~ivHrDlKp~NILl~~~--~~~kl~dfg~~~~~~~~  170 (318)
T d3blha1         120 KRVMQMLLNG-LYYIHRNKILHRDMKAANVLITRD--GVLKLADFGLARAFSLA  170 (318)
T ss_dssp             HHHHHHHHHH-HHHHHHTTEECCCCCGGGEEECTT--SCEEECCCTTCEECCC-
T ss_pred             HHHHHHHHHH-HHHhccCCEEecCcCchheeecCC--CcEEeeecceeeecccc
Confidence            3455555555 344568999999999999999865  89999999999888753

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.019  Score=57.05  Aligned_cols=49  Identities=24%  Similarity=0.344  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+. +-+...|++|+|.+|.||++..+  |.+.+.|||+......
T Consensus       120 ~~~~qi~~aL-~yLH~~~ivHrDiKp~NILi~~~--~~~kl~dfg~~~~~~~  168 (305)
T d1blxa_         120 DMMFQLLRGL-DFLHSHRVVHRDLKPQNILVTSS--GQIKLADFGLARIYSF  168 (305)
T ss_dssp             HHHHHHHHHH-HHHHHTTCCCCCCCGGGEEECTT--CCEEECSCCSCCCCCG
T ss_pred             HHHHHHHHHH-HHHHhCCEEecCCCccEEEEcCC--CCeeecchhhhhhhcc
Confidence            3455555443 45679999999999999999864  8999999999887654

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.02  Score=57.98  Aligned_cols=52  Identities=23%  Similarity=0.305  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCC-CCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDP-PHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~-~g~lvllDfG~v~~l~~   72 (729)
                      ..++..++++.-. +...|++|+|..|.||+++.+. ++.+.|.|||+.+.+..
T Consensus       114 ~~i~~qi~~al~y-lH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~  166 (335)
T d2ozaa1         114 SEIMKSIGEAIQY-LHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS  166 (335)
T ss_dssp             HHHHHHHHHHHHH-HHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCC
T ss_pred             HHHHHHHHHHHHH-HHHcCCccccccccccccccccccccccccccceeeeccC
Confidence            4455555554433 5689999999999999998632 46799999999876644

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.018  Score=56.38  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++. +-+...|++|+|.+|.||++..+  +.+-|.|||+...+...
T Consensus       115 ~~~~qi~~gl-~ylH~~~iiHrDikp~NIll~~~--~~vkl~DfGl~~~~~~~  164 (273)
T d1u46a_         115 RYAVQVAEGM-GYLESKRFIHRDLAARNLLLATR--DLVKIGDFGLMRALPQN  164 (273)
T ss_dssp             HHHHHHHHHH-HHHHHTTEECSCCCGGGEEEEET--TEEEECCCTTCEECCC-
T ss_pred             HHHHHHHHHH-HHhhhCCEeeeeecHHHhccccc--cceeeccchhhhhcccC
Confidence            3444444443 33567999999999999999875  79999999999887554

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.021  Score=56.90  Aligned_cols=51  Identities=22%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ..++..++++ +.-+...+++|+|.+|.||+++.+  +.+.|-|||+.+.+...
T Consensus       136 ~~i~~~ia~g-l~~LH~~~ivHrDlk~~NiLld~~--~~~Kl~DFGla~~~~~~  186 (308)
T d1p4oa_         136 IQMAGEIADG-MAYLNANKFVHRDLAARNCMVAED--FTVKIGDFGMTRDIYET  186 (308)
T ss_dssp             HHHHHHHHHH-HHHHHHTTCBCSCCSGGGEEECTT--CCEEECCTTCCCGGGGG
T ss_pred             HHHHHHHHHH-HHHHhhCCeeeceEcCCceeecCC--ceEEEeecccceeccCC
Confidence            4455555554 445578999999999999999764  78999999998766544

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.022  Score=55.51  Aligned_cols=51  Identities=33%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +.+++..++++... +...|++|+|.+|.||+++.+  |.+.+-|||+.+.++.
T Consensus       105 ~~~i~~~i~~al~y-lH~~~ivH~dlkp~Nil~~~~--~~~kl~dfg~s~~~~~  155 (262)
T d1byga_         105 LLKFSLDVCEAMEY-LEGNNFVHRDLAARNVLVSED--NVAKVSDFGLTKEASS  155 (262)
T ss_dssp             HHHHHHHHHHHHHH-HHHTTCCCSCCSGGGEEECTT--SCEEECCCCC------
T ss_pred             HHHHHHHHHhhccc-cccCceeccccchHhheecCC--CCEeecccccceecCC
Confidence            34567777776554 779999999999999999865  8899999999876554

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.028  Score=56.41  Aligned_cols=40  Identities=25%  Similarity=0.312  Sum_probs=34.1

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ++-+...|++|.|.+|.||+++.+  |++.|.|||+.+.+..
T Consensus       116 l~ylH~~~iiHrDikp~NiL~~~~--~~~kl~DFG~a~~~~~  155 (320)
T d1xjda_         116 LQFLHSKGIVYRDLKLDNILLDKD--GHIKIADFGMCKENML  155 (320)
T ss_dssp             HHHHHHTTCBCCCCCGGGEEECTT--SCEEECCCTTCBCCCC
T ss_pred             HHHHHhCCeeeccCcccceeecCC--Cceeccccchhhhccc
Confidence            444568999999999999999864  8999999999987654

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.015  Score=58.40  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      .++..++++ +.-+...|++|+|.+|.||+++.+  +.+.|.|||+...+...
T Consensus       115 ~i~~qi~~g-l~yLH~~~iiHrDlKp~NIll~~~--~~~kl~DFGla~~~~~~  164 (317)
T d1xkka_         115 NWCVQIAKG-MNYLEDRRLVHRDLAARNVLVKTP--QHVKITDFGLAKLLGAE  164 (317)
T ss_dssp             HHHHHHHHH-HHHHHHTTCCCSCCCGGGEEEEET--TEEEECCCSHHHHTTTT
T ss_pred             HHHHHHHHH-HHHHHHcCcccCcchhhcceeCCC--CCeEeeccccceecccc
Confidence            344555544 445578999999999999999875  78999999998877554

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.71  E-value=0.015  Score=57.83  Aligned_cols=52  Identities=21%  Similarity=0.333  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ...++..++..... +...|.+|+|..|.||+++.+  +.+.|-|||+.+.+.+.
T Consensus       142 ~~~i~~qi~~gl~y-lH~~~ivHrDlKp~NILld~~--~~~Kl~DFGls~~~~~~  193 (301)
T d1lufa_         142 QLCIARQVAAGMAY-LSERKFVHRDLATRNCLVGEN--MVVKIADFGLSRNIYSA  193 (301)
T ss_dssp             HHHHHHHHHHHHHH-HHHTTCCCSCCSGGGEEECGG--GCEEECCCSCHHHHTGG
T ss_pred             HHHHHHHHHHHhhh-cccCCeEeeEEcccceEECCC--CcEEEccchhheeccCC
Confidence            34456666655433 678999999999999999865  88999999998766544

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.024  Score=56.22  Aligned_cols=52  Identities=19%  Similarity=0.287  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      ...++..++.+.- -+...|++|+|..|.||++..+  +.+-|-|||+...++..
T Consensus       137 ~~~~~~qi~~al~-ylH~~~ivHrDiKp~NiLl~~~--~~~kl~dfg~~~~~~~~  188 (299)
T d1fgka_         137 LVSCAYQVARGME-YLASKKCIHRDLAARNVLVTED--NVMKIADFGLARDIHHI  188 (299)
T ss_dssp             HHHHHHHHHHHHH-HHHHTTCCCSCCSGGGEEECTT--CCEEECSTTCCCCGGGC
T ss_pred             HHHHHHHHHHHHH-HhhhCCEEeeeecccceeecCC--CCeEeccchhhcccccc
Confidence            3556667777644 4889999999999999999875  78999999999887643

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=93.52  E-value=0.016  Score=60.01  Aligned_cols=50  Identities=22%  Similarity=0.333  Sum_probs=35.3

Q ss_pred             CccccCCCCCCeEEecCCCCCeEEEecccccccCH--HHHHHHHHHHHHHHhCCH
Q 004807           38 GFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS--SMKQALAKMFFAAAEGDH   90 (729)
Q Consensus        38 GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~--~~r~~l~~L~~a~~~~D~   90 (729)
                      .+.|+|.|||||+++++   ++.+|||-++.-=++  +.=.-++.++.+....+.
T Consensus       224 ~LiHGDl~~gNIlv~~~---~~~vID~E~a~~G~~~~Dlg~~~~~~~~~~~~~~~  275 (392)
T d2pula1         224 TLIHGDLHTGSIFASEH---ETKVIDPEFAFYGPIGFDVGQFIANLFLNALSRDG  275 (392)
T ss_dssp             EEECSCCCGGGEEECSS---CEEECCCTTCEEECTHHHHHHHHHHHHHHHHHSCG
T ss_pred             ceeccCCcCCceeEcCC---ceEEechhhcccCCHHHHHHHHHHHHHHHHhhccc
Confidence            68999999999999854   699999965544444  333444666666665543

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.026  Score=55.74  Aligned_cols=51  Identities=20%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCC--CCeEEEecccccccCH
Q 004807           21 KVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPP--HRPILLDFGLTKKLSS   72 (729)
Q Consensus        21 ~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~--g~lvllDfG~v~~l~~   72 (729)
                      .++..++.+ +.-+...|++|.|.+|.||++..++.  .++.+.|||+...++.
T Consensus       117 ~~~~qi~~a-l~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~  169 (293)
T d1jksa_         117 EFLKQILNG-VYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF  169 (293)
T ss_dssp             HHHHHHHHH-HHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTT
T ss_pred             HHHHHHHHH-HHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCC
Confidence            344555544 45557999999999999999987521  2589999999988764

>d1pyya4 e.3.1.1 (A:264-631) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 2x (pbp-2x), transpeptidase domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.33  E-value=0.59  Score=47.11  Aligned_cols=82  Identities=13%  Similarity=0.043  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhccCCCCceEEEEEE--ecceeEEEeeeeecCCC------CCCCCC---CCCccccccchHHHHHHHH
Q 004807          229 DVEAKLRDFLVELGNDGKILGIQVCAY--KDGEVIIDTSAGMLGRY------DPRPVQ---PDSLFPVFSVTKGITAGML  297 (729)
Q Consensus       229 ~~~~~l~~~l~~~~~~~~~~G~sv~v~--~~g~~v~~~~~G~~~~~------~~~p~~---~~t~f~i~SitK~~ta~~v  297 (729)
                      .+...+++.+++.+++..-...++.|+  +.|+++.-..+-.-|..      ...+..   ....|.-||.=|.||+++.
T Consensus         5 ~lQ~~~e~~l~~~~~~~~~~~~~~vv~d~~TG~IlAmas~P~~dpn~~~~~~~~~~~~n~a~~~~~~PGStfKp~~~aaa   84 (368)
T d1pyya4           5 PLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMMLAAA   84 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEESCCCTTTCTTCCTTCCCCCHHHHCCBCCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCceEEEEEEECCCCcEEEEEeCCCCCcccccCccchhhhhhhhhhCccCCcchhhhHHHHHh
Confidence            344444445544443333334444555  67888765433111111      111111   1245778999999987664


Q ss_pred             HHHHHCCCCCccCchh
Q 004807          298 HWLVDNGKLKLEENIA  313 (729)
Q Consensus       298 ~~lve~G~l~ldd~v~  313 (729)
                         +|+|.++.++.+.
T Consensus        85 ---Le~g~~~~~~~~~   97 (368)
T d1pyya4          85 ---IDNNTFPGGEVFN   97 (368)
T ss_dssp             ---HHTTCCCTTCEEE
T ss_pred             ---hhccccccccccc
Confidence               5889988776554

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.052  Score=54.73  Aligned_cols=48  Identities=27%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHH
Q 004807           23 VEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSS   73 (729)
Q Consensus        23 a~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~   73 (729)
                      +..++.+ +.-+...|++|+|.+|.||+++.+  |.+.+.|||........
T Consensus       127 ~~qil~a-L~~LH~~giiHrDiKp~NILi~~~--~~~kl~dfg~a~~~~~~  174 (348)
T d2gfsa1         127 IYQILRG-LKYIHSADIIHRDLKPSNLAVNED--CELKILDFGLARHTDDE  174 (348)
T ss_dssp             HHHHHHH-HHHHHHTTCCCCCCCGGGEEECTT--CCEEECCC----CCTGG
T ss_pred             HHHHHHH-HHHHHhCCCcccccCCcccccccc--ccccccccchhcccCcc
Confidence            3344433 344568999999999999999865  89999999998776544

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.035  Score=55.23  Aligned_cols=51  Identities=20%  Similarity=0.327  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           19 KQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        19 ~~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      +..++..+++.. .-+...|++|+|..|.||++..+  +.+.|-|||+......
T Consensus       129 ~~~~~~qia~gl-~~lH~~~iiHrDlkp~NIL~~~~--~~~kl~DfG~a~~~~~  179 (309)
T d1fvra_         129 LLHFAADVARGM-DYLSQKQFIHRDLAARNILVGEN--YVAKIADFGLSRGQEV  179 (309)
T ss_dssp             HHHHHHHHHHHH-HHHHHTTEECSCCSGGGEEECGG--GCEEECCTTCEESSCE
T ss_pred             HHHHHHHHHHHH-HhhhcCCccccccccceEEEcCC--CceEEccccccccccc
Confidence            345666666665 44789999999999999999875  7899999999876553

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.053  Score=54.98  Aligned_cols=42  Identities=29%  Similarity=0.525  Sum_probs=29.7

Q ss_pred             HHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCHHH
Q 004807           31 AHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSSSM   74 (729)
Q Consensus        31 ~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~~~   74 (729)
                      +.-+...|++|.|.+|.||++..+  +.+.+.|||+.+..+...
T Consensus       132 l~~LH~~giiHrDlKP~Nil~~~~--~~~kl~df~~~~~~~~~~  173 (355)
T d2b1pa1         132 IKHLHSAGIIHRDLKPSNIVVKSD--CTLKILDFGLARTAGTSF  173 (355)
T ss_dssp             HHHHHHTTCCCSCCCGGGEEECTT--CCEEECCCCC--------
T ss_pred             HHHhhhcccccccCCccccccccc--cceeeechhhhhcccccc
Confidence            344568999999999999999875  789999999988776544

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.06  Score=53.53  Aligned_cols=50  Identities=14%  Similarity=0.281  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCCCeEEEecccccccCH
Q 004807           20 QKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPHRPILLDFGLTKKLSS   72 (729)
Q Consensus        20 ~~la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g~lvllDfG~v~~l~~   72 (729)
                      ..++..+++.. +-+...|++|.|..|.||+++.+  +.+.+.|||+.+.+..
T Consensus       148 ~~~~~qi~~gl-~~LH~~~ivHrDLKp~NIl~~~~--~~~ki~DfG~~~~~~~  197 (311)
T d1t46a_         148 LSFSYQVAKGM-AFLASKNCIHRDLAARNILLTHG--RITKICDFGLARDIKN  197 (311)
T ss_dssp             HHHHHHHHHHH-HHHHHTTCCCSCCSGGGEEEETT--TEEEECCCGGGSCTTS
T ss_pred             HHHHHHHHHHH-HHHHhCCeeeccccccccccccc--CcccccccchheeccC
Confidence            34455554443 34568999999999999999865  8999999999987654

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.81  E-value=0.06  Score=54.44  Aligned_cols=51  Identities=14%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHcCccccCCCCCCeEEecCCCC----CeEEEecccccccCH
Q 004807           22 VVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKDPPH----RPILLDFGLTKKLSS   72 (729)
Q Consensus        22 la~~l~~~~~~qif~~GffHaDPHPGNilv~~d~~g----~lvllDfG~v~~l~~   72 (729)
                      ++..++.+....--..|++|+|.+|.||++..++.+    ++.+.|||.......
T Consensus       130 i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~  184 (362)
T d1q8ya_         130 ISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE  184 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB
T ss_pred             HHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeeccccccccc
Confidence            333444433332224899999999999999875221    489999999876643

>d2olua2 e.3.1.1 (A:293-692) Penicillin-binding protein 2, PBP2 {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: beta-lactamase/transpeptidase-like
superfamily: beta-lactamase/transpeptidase-like
family: beta-Lactamase/D-ala carboxypeptidase
domain: Penicillin-binding protein 2, PBP2
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.99  E-value=3.1  Score=42.03  Aligned_cols=84  Identities=19%  Similarity=0.056  Sum_probs=47.4

Q ss_pred             chHHHHHHHHHHHHhccCC-CCceEEEEEE--ecceeEEEeeeeecCCCCCC-CCCCCCccccccchHHHHHHHHHHHHH
Q 004807          227 HSDVEAKLRDFLVELGNDG-KILGIQVCAY--KDGEVIIDTSAGMLGRYDPR-PVQPDSLFPVFSVTKGITAGMLHWLVD  302 (729)
Q Consensus       227 ~~~~~~~l~~~l~~~~~~~-~~~G~sv~v~--~~g~~v~~~~~G~~~~~~~~-p~~~~t~f~i~SitK~~ta~~v~~lve  302 (729)
                      ..++.+.+++.+++..... .-..+++.|+  +.|+++.-  .|..+..... .......+..||.=|.|++.++  +.|
T Consensus        44 D~~lQ~~ae~~l~~~~~~~~~~~~~a~vvvd~~TG~IlAm--~~~~~y~~~~~~n~~~~~~~pGStfKp~v~~aa--ale  119 (400)
T d2olua2          44 DKDVQKTLQNDVDNGSFYKNKDQQVGATILDSKTGGLVAI--SGGRDFKDVVNRNQATDPHPTGSSLKPFLAYGP--AIE  119 (400)
T ss_dssp             CHHHHHHHHHHHHHCSCCSSTTEEEEEEEEETTTCBEEEE--ECSTTCCTTTSCCTTTSCEECGGGGHHHHTHHH--HHH
T ss_pred             CHHHHHHHHHHHHhhhhccCcCceEEEEEEECCCCcEEEE--EECCCCCcchhhhhhhhccccccccccHHHHHH--Hhh
Confidence            4556666666666543211 1222333444  57888753  4444433221 1122346899999999864433  357


Q ss_pred             CCCCCccCchhh
Q 004807          303 NGKLKLEENIAN  314 (729)
Q Consensus       303 ~G~l~ldd~v~~  314 (729)
                      +|.+..++.+..
T Consensus       120 ~g~~~~~~~~~~  131 (400)
T d2olua2         120 NMKWATNHAIQD  131 (400)
T ss_dssp             HTCCCTTBEEEC
T ss_pred             cCCeecceeccc
Confidence            898888877643